Query 040597
Match_columns 515
No_of_seqs 400 out of 3071
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-63 5.5E-68 539.7 29.9 500 3-515 22-590 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-40 2.9E-45 326.7 14.6 256 140-401 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.3E-38 2.9E-43 363.7 28.7 299 132-453 181-504 (1153)
4 PRK04841 transcriptional regul 99.6 8.6E-14 1.9E-18 158.2 18.7 291 135-451 14-332 (903)
5 PRK00411 cdc6 cell division co 99.4 1.9E-11 4.2E-16 125.5 23.4 209 133-344 28-256 (394)
6 TIGR03015 pepcterm_ATPase puta 99.4 5.9E-11 1.3E-15 115.2 20.2 184 160-347 42-242 (269)
7 PF01637 Arch_ATPase: Archaeal 99.3 8.8E-12 1.9E-16 118.0 11.2 195 137-342 1-233 (234)
8 COG2909 MalT ATP-dependent tra 99.3 1.1E-10 2.5E-15 122.8 19.6 292 134-450 18-337 (894)
9 TIGR02928 orc1/cdc6 family rep 99.2 7.8E-10 1.7E-14 112.3 18.9 205 134-340 14-243 (365)
10 PF05729 NACHT: NACHT domain 99.2 2.4E-10 5.2E-15 102.1 11.7 143 162-310 1-163 (166)
11 TIGR00635 ruvB Holliday juncti 99.1 1.2E-09 2.7E-14 108.0 14.7 266 135-425 4-288 (305)
12 PRK00080 ruvB Holliday junctio 99.1 7.3E-10 1.6E-14 110.5 12.5 270 135-426 25-310 (328)
13 COG2256 MGS1 ATPase related to 99.0 5.3E-09 1.1E-13 101.8 11.8 154 158-338 45-207 (436)
14 PF13401 AAA_22: AAA domain; P 98.9 5.7E-09 1.2E-13 89.4 8.0 118 160-279 3-125 (131)
15 PRK06893 DNA replication initi 98.8 5.6E-08 1.2E-12 91.7 13.7 154 161-345 39-205 (229)
16 PTZ00112 origin recognition co 98.8 7.1E-08 1.5E-12 102.9 15.6 178 134-312 754-951 (1164)
17 PRK13342 recombination factor 98.8 3.7E-08 8E-13 101.3 12.4 176 135-343 12-196 (413)
18 COG3899 Predicted ATPase [Gene 98.8 1.6E-07 3.5E-12 104.2 16.7 277 136-423 1-354 (849)
19 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.2E-07 2.6E-12 89.4 12.2 167 143-345 25-203 (226)
20 PF13191 AAA_16: AAA ATPase do 98.7 3.1E-08 6.7E-13 90.2 7.6 47 136-184 1-47 (185)
21 PTZ00202 tuzin; Provisional 98.7 1.6E-06 3.5E-11 86.3 18.7 169 130-309 257-433 (550)
22 PRK12402 replication factor C 98.7 3.3E-07 7.2E-12 92.0 14.1 197 135-341 15-224 (337)
23 PRK05564 DNA polymerase III su 98.7 5.2E-07 1.1E-11 89.4 15.2 179 135-342 4-189 (313)
24 cd00009 AAA The AAA+ (ATPases 98.7 1.7E-07 3.8E-12 81.3 10.4 124 138-280 1-130 (151)
25 PRK14963 DNA polymerase III su 98.7 8.6E-08 1.9E-12 100.1 9.6 197 135-340 14-214 (504)
26 PRK07003 DNA polymerase III su 98.7 4.2E-07 9.1E-12 96.6 14.6 193 135-342 16-220 (830)
27 PRK14961 DNA polymerase III su 98.6 6.7E-07 1.5E-11 90.4 15.4 191 135-340 16-217 (363)
28 COG1474 CDC6 Cdc6-related prot 98.6 1.9E-06 4.2E-11 86.4 18.4 204 136-343 18-238 (366)
29 PF13173 AAA_14: AAA domain 98.6 2E-07 4.3E-12 79.5 9.2 118 162-301 3-126 (128)
30 PRK14949 DNA polymerase III su 98.6 7.1E-07 1.5E-11 96.7 14.7 191 135-341 16-218 (944)
31 KOG2028 ATPase related to the 98.6 6.9E-07 1.5E-11 85.8 12.7 159 158-338 159-331 (554)
32 PRK14960 DNA polymerase III su 98.6 1E-06 2.2E-11 92.7 14.6 191 135-340 15-216 (702)
33 PRK12323 DNA polymerase III su 98.6 8.7E-07 1.9E-11 93.0 13.8 196 135-342 16-224 (700)
34 PF05496 RuvB_N: Holliday junc 98.6 3.1E-07 6.8E-12 83.8 9.2 175 135-341 24-219 (233)
35 TIGR02903 spore_lon_C ATP-depe 98.5 1.5E-06 3.2E-11 93.4 15.4 203 135-346 154-398 (615)
36 PRK06645 DNA polymerase III su 98.5 1.6E-06 3.5E-11 90.3 14.9 194 135-340 21-226 (507)
37 PRK00440 rfc replication facto 98.5 2.2E-06 4.7E-11 85.4 15.1 180 135-340 17-200 (319)
38 PRK14957 DNA polymerase III su 98.5 1.8E-06 3.9E-11 90.6 14.7 183 135-343 16-221 (546)
39 PLN03025 replication factor C 98.5 1.6E-06 3.5E-11 86.1 13.6 181 135-339 13-196 (319)
40 TIGR00678 holB DNA polymerase 98.5 4.8E-06 1E-10 76.1 15.6 91 239-339 95-187 (188)
41 cd01128 rho_factor Transcripti 98.5 2.8E-07 6E-12 87.4 6.9 90 160-250 15-113 (249)
42 PRK13341 recombination factor 98.5 1E-06 2.2E-11 95.7 11.7 171 135-337 28-211 (725)
43 PRK07940 DNA polymerase III su 98.5 4.1E-06 8.9E-11 84.8 15.2 192 135-343 5-213 (394)
44 PRK08903 DnaA regulatory inact 98.4 3.5E-06 7.6E-11 79.5 13.7 172 138-347 22-203 (227)
45 PRK07994 DNA polymerase III su 98.4 2.7E-06 6E-11 90.6 14.3 192 135-341 16-218 (647)
46 PRK14951 DNA polymerase III su 98.4 4.6E-06 1E-10 88.7 15.3 195 135-341 16-223 (618)
47 TIGR02397 dnaX_nterm DNA polym 98.4 6.7E-06 1.5E-10 83.2 15.9 182 135-343 14-218 (355)
48 PRK09112 DNA polymerase III su 98.4 6.3E-06 1.4E-10 82.3 15.3 196 135-344 23-241 (351)
49 PRK14958 DNA polymerase III su 98.4 3.7E-06 8.1E-11 88.1 14.2 180 135-340 16-217 (509)
50 PRK07471 DNA polymerase III su 98.4 1E-05 2.3E-10 81.2 16.6 194 135-344 19-239 (365)
51 PRK08727 hypothetical protein; 98.4 6.5E-06 1.4E-10 77.8 14.3 148 162-340 42-201 (233)
52 PRK14962 DNA polymerase III su 98.4 5.4E-06 1.2E-10 86.0 14.8 186 135-346 14-222 (472)
53 PRK14955 DNA polymerase III su 98.4 3.1E-06 6.7E-11 86.6 12.9 198 135-340 16-225 (397)
54 PRK08691 DNA polymerase III su 98.4 3.3E-06 7.1E-11 89.7 13.1 192 135-341 16-218 (709)
55 PRK14956 DNA polymerase III su 98.4 2.6E-06 5.7E-11 87.2 11.7 190 135-339 18-218 (484)
56 PRK14964 DNA polymerase III su 98.4 1.1E-05 2.4E-10 83.4 15.9 179 135-339 13-213 (491)
57 PRK04195 replication factor C 98.4 7.4E-06 1.6E-10 86.1 14.7 180 135-341 14-200 (482)
58 PRK09376 rho transcription ter 98.3 1.2E-06 2.6E-11 86.8 7.9 100 146-250 158-266 (416)
59 PRK08084 DNA replication initi 98.3 1.1E-05 2.3E-10 76.5 13.9 152 161-343 45-209 (235)
60 PRK14969 DNA polymerase III su 98.3 5.3E-06 1.1E-10 87.6 13.0 178 135-338 16-215 (527)
61 PRK05896 DNA polymerase III su 98.3 1.2E-05 2.6E-10 84.6 14.8 195 135-344 16-222 (605)
62 PF05621 TniB: Bacterial TniB 98.3 2.9E-05 6.2E-10 74.4 15.5 196 144-342 46-260 (302)
63 KOG2227 Pre-initiation complex 98.3 3.6E-05 7.8E-10 76.8 16.6 212 133-348 148-373 (529)
64 PRK07764 DNA polymerase III su 98.3 1.2E-05 2.7E-10 88.5 14.7 190 135-339 15-217 (824)
65 PRK09111 DNA polymerase III su 98.3 1.6E-05 3.4E-10 84.8 14.6 196 135-342 24-232 (598)
66 TIGR03345 VI_ClpV1 type VI sec 98.3 1.8E-05 3.9E-10 88.2 15.5 179 135-336 187-389 (852)
67 COG3903 Predicted ATPase [Gene 98.2 7E-07 1.5E-11 87.8 3.7 216 159-384 12-240 (414)
68 PRK09087 hypothetical protein; 98.2 1.7E-05 3.6E-10 74.5 12.9 142 161-343 44-195 (226)
69 TIGR01242 26Sp45 26S proteasom 98.2 1.8E-05 3.9E-10 80.2 13.9 178 134-337 121-328 (364)
70 PRK14087 dnaA chromosomal repl 98.2 3.2E-05 7E-10 80.1 15.9 168 161-346 141-322 (450)
71 PRK05642 DNA replication initi 98.2 2.1E-05 4.5E-10 74.4 13.1 153 161-344 45-209 (234)
72 PRK14950 DNA polymerase III su 98.2 2.3E-05 5E-10 84.2 14.4 194 135-342 16-220 (585)
73 PRK14952 DNA polymerase III su 98.2 4.2E-05 9.1E-10 81.1 16.1 189 135-338 13-214 (584)
74 PRK14970 DNA polymerase III su 98.2 3.7E-05 8.1E-10 78.1 15.2 180 135-339 17-205 (367)
75 PRK14959 DNA polymerase III su 98.2 2.6E-05 5.7E-10 82.5 14.4 198 135-347 16-225 (624)
76 PRK14954 DNA polymerase III su 98.2 4.3E-05 9.3E-10 81.7 15.8 196 135-338 16-223 (620)
77 PF00308 Bac_DnaA: Bacterial d 98.1 6.1E-05 1.3E-09 70.4 14.5 181 137-341 11-206 (219)
78 TIGR00767 rho transcription te 98.1 5E-06 1.1E-10 82.8 7.3 90 160-250 167-265 (415)
79 PHA02544 44 clamp loader, smal 98.1 2.7E-05 6E-10 77.3 12.6 147 135-308 21-171 (316)
80 PRK14953 DNA polymerase III su 98.1 8.2E-05 1.8E-09 77.7 16.0 181 135-341 16-218 (486)
81 KOG0989 Replication factor C, 98.1 1.6E-05 3.6E-10 75.1 9.6 182 135-336 36-223 (346)
82 TIGR02639 ClpA ATP-dependent C 98.1 4.1E-05 8.9E-10 84.6 14.4 154 135-310 182-358 (731)
83 PRK07133 DNA polymerase III su 98.1 8.1E-05 1.8E-09 80.1 15.4 187 135-338 18-214 (725)
84 PRK05707 DNA polymerase III su 98.1 0.00012 2.5E-09 72.7 15.4 97 239-343 105-203 (328)
85 PRK08451 DNA polymerase III su 98.1 0.00013 2.9E-09 76.2 16.4 191 135-340 14-215 (535)
86 TIGR00362 DnaA chromosomal rep 98.0 0.00015 3.2E-09 74.7 15.9 158 161-340 136-307 (405)
87 PRK03992 proteasome-activating 98.0 6.4E-05 1.4E-09 76.6 13.0 177 135-337 131-337 (389)
88 PRK14965 DNA polymerase III su 98.0 8.8E-05 1.9E-09 79.3 14.4 194 135-343 16-221 (576)
89 PRK14971 DNA polymerase III su 98.0 0.00011 2.3E-09 79.1 15.0 178 135-339 17-218 (614)
90 CHL00095 clpC Clp protease ATP 98.0 7.8E-05 1.7E-09 83.4 14.3 153 135-309 179-353 (821)
91 PRK06305 DNA polymerase III su 98.0 0.00011 2.3E-09 76.3 14.3 180 135-338 17-217 (451)
92 PF14516 AAA_35: AAA-like doma 98.0 0.00024 5.2E-09 70.9 16.3 202 133-350 9-246 (331)
93 PRK11331 5-methylcytosine-spec 98.0 2.5E-05 5.5E-10 79.1 9.3 120 135-265 175-298 (459)
94 CHL00181 cbbX CbbX; Provisiona 98.0 0.00032 7E-09 68.3 16.7 136 161-312 59-211 (287)
95 PRK06620 hypothetical protein; 98.0 9.6E-05 2.1E-09 68.7 12.0 134 162-340 45-186 (214)
96 PRK14948 DNA polymerase III su 98.0 0.00022 4.7E-09 76.7 16.2 194 135-341 16-220 (620)
97 KOG2543 Origin recognition com 98.0 4.7E-05 1E-09 74.1 9.8 167 134-309 5-192 (438)
98 TIGR02880 cbbX_cfxQ probable R 97.9 0.00016 3.5E-09 70.4 13.2 133 163-311 60-209 (284)
99 PF00004 AAA: ATPase family as 97.9 3.7E-05 8E-10 65.5 7.7 70 164-253 1-71 (132)
100 PRK06647 DNA polymerase III su 97.9 0.00036 7.8E-09 74.1 16.6 191 135-340 16-217 (563)
101 COG2255 RuvB Holliday junction 97.9 0.00022 4.8E-09 66.9 12.8 174 135-340 26-220 (332)
102 TIGR02881 spore_V_K stage V sp 97.9 0.0002 4.3E-09 69.0 13.3 137 159-311 40-192 (261)
103 PRK05563 DNA polymerase III su 97.9 0.00037 8.1E-09 74.2 16.4 191 135-340 16-217 (559)
104 PRK07399 DNA polymerase III su 97.9 0.00036 7.8E-09 68.8 14.8 195 136-342 5-220 (314)
105 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00024 5.2E-09 79.8 15.0 153 135-310 173-349 (852)
106 PRK00149 dnaA chromosomal repl 97.9 0.0002 4.3E-09 74.7 13.4 159 160-340 147-319 (450)
107 PRK14088 dnaA chromosomal repl 97.9 0.00036 7.7E-09 72.3 15.0 159 161-340 130-302 (440)
108 PRK12422 chromosomal replicati 97.8 0.0002 4.3E-09 74.0 12.8 154 161-336 141-306 (445)
109 COG3267 ExeA Type II secretory 97.8 0.0012 2.5E-08 61.4 15.6 183 159-346 49-248 (269)
110 PRK11034 clpA ATP-dependent Cl 97.8 0.00032 6.9E-09 76.9 14.1 154 136-310 187-362 (758)
111 PRK10865 protein disaggregatio 97.8 0.00038 8.3E-09 77.9 15.0 44 135-183 178-221 (857)
112 PRK08116 hypothetical protein; 97.8 0.00011 2.4E-09 70.9 9.3 103 162-279 115-220 (268)
113 smart00382 AAA ATPases associa 97.8 0.00012 2.5E-09 62.7 8.3 88 162-253 3-91 (148)
114 TIGR00602 rad24 checkpoint pro 97.8 0.00024 5.3E-09 75.9 12.1 50 135-184 84-133 (637)
115 PF05673 DUF815: Protein of un 97.7 0.00019 4.1E-09 66.8 9.1 109 132-266 24-133 (249)
116 PRK08769 DNA polymerase III su 97.7 0.00058 1.3E-08 67.2 12.9 96 239-344 112-209 (319)
117 PRK08058 DNA polymerase III su 97.7 0.00062 1.3E-08 67.9 13.3 162 136-308 6-180 (329)
118 PRK06871 DNA polymerase III su 97.7 0.0011 2.3E-08 65.5 14.3 176 145-340 12-200 (325)
119 PRK14086 dnaA chromosomal repl 97.7 0.0013 2.7E-08 69.7 15.6 155 162-338 315-483 (617)
120 PRK10865 protein disaggregatio 97.6 0.00042 9.2E-09 77.6 12.6 135 135-279 568-720 (857)
121 COG0593 DnaA ATPase involved i 97.6 0.0017 3.7E-08 65.4 15.5 137 160-313 112-260 (408)
122 PF13177 DNA_pol3_delta2: DNA 97.6 0.0009 2E-08 59.4 11.7 135 141-298 3-162 (162)
123 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00074 1.6E-08 75.9 13.6 135 135-279 565-717 (852)
124 TIGR02639 ClpA ATP-dependent C 97.6 0.00071 1.5E-08 74.9 13.2 120 135-266 454-579 (731)
125 PRK06090 DNA polymerase III su 97.5 0.0019 4E-08 63.6 13.8 94 239-344 107-202 (319)
126 COG1373 Predicted ATPase (AAA+ 97.5 0.0016 3.4E-08 66.6 13.2 118 163-305 39-162 (398)
127 PRK12377 putative replication 97.5 0.00017 3.8E-09 68.3 5.8 102 161-279 101-205 (248)
128 PTZ00454 26S protease regulato 97.5 0.0025 5.3E-08 65.0 14.4 179 135-338 145-352 (398)
129 PRK07993 DNA polymerase III su 97.5 0.0034 7.4E-08 62.5 15.0 178 144-341 11-202 (334)
130 PF04665 Pox_A32: Poxvirus A32 97.5 0.00023 4.9E-09 66.6 6.2 37 161-199 13-49 (241)
131 TIGR03689 pup_AAA proteasome A 97.5 0.00072 1.6E-08 70.5 10.3 164 135-310 182-378 (512)
132 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00041 8.9E-09 77.5 9.0 135 135-279 566-718 (852)
133 PRK08118 topology modulation p 97.4 6.7E-05 1.5E-09 66.9 2.3 34 163-196 3-37 (167)
134 CHL00176 ftsH cell division pr 97.4 0.0022 4.7E-08 69.2 14.0 177 135-336 183-387 (638)
135 KOG0741 AAA+-type ATPase [Post 97.4 0.0036 7.8E-08 63.7 14.1 150 158-333 535-704 (744)
136 PF01695 IstB_IS21: IstB-like 97.4 0.00021 4.5E-09 64.4 5.0 100 161-279 47-149 (178)
137 PRK08181 transposase; Validate 97.4 0.00048 1E-08 66.1 7.7 101 162-280 107-209 (269)
138 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0039 8.4E-08 60.1 14.0 41 163-208 23-63 (262)
139 PRK06964 DNA polymerase III su 97.4 0.0058 1.3E-07 60.7 14.9 93 239-343 131-225 (342)
140 PRK06526 transposase; Provisio 97.3 0.00043 9.2E-09 66.1 6.6 101 161-280 98-201 (254)
141 PTZ00361 26 proteosome regulat 97.3 0.00057 1.2E-08 70.2 7.7 156 136-311 184-368 (438)
142 PF10443 RNA12: RNA12 protein; 97.3 0.0088 1.9E-07 60.2 15.7 206 140-357 1-293 (431)
143 PRK09183 transposase/IS protei 97.3 0.001 2.2E-08 63.8 8.9 100 162-279 103-205 (259)
144 PRK10536 hypothetical protein; 97.3 0.0045 9.7E-08 58.4 12.8 134 136-280 56-213 (262)
145 TIGR02237 recomb_radB DNA repa 97.3 0.0011 2.5E-08 61.4 8.9 87 159-249 10-106 (209)
146 COG0470 HolB ATPase involved i 97.3 0.0014 3E-08 65.3 10.1 142 136-296 2-167 (325)
147 PF07693 KAP_NTPase: KAP famil 97.3 0.012 2.5E-07 58.7 16.7 40 143-184 4-43 (325)
148 PRK09361 radB DNA repair and r 97.3 0.0016 3.4E-08 61.3 9.9 87 159-249 21-116 (225)
149 PRK07952 DNA replication prote 97.3 0.0038 8.2E-08 59.1 12.1 103 161-279 99-204 (244)
150 PRK04296 thymidine kinase; Pro 97.3 0.00057 1.2E-08 62.4 6.3 112 162-280 3-116 (190)
151 PRK06921 hypothetical protein; 97.3 0.0014 3E-08 63.2 9.2 99 161-279 117-224 (266)
152 PRK11034 clpA ATP-dependent Cl 97.3 0.0023 5E-08 70.3 11.9 118 136-265 459-582 (758)
153 TIGR01241 FtsH_fam ATP-depende 97.3 0.0046 1E-07 65.4 13.9 178 135-337 55-260 (495)
154 PHA00729 NTP-binding motif con 97.2 0.0035 7.6E-08 58.1 11.2 24 160-183 16-39 (226)
155 CHL00095 clpC Clp protease ATP 97.2 0.0011 2.4E-08 74.2 9.6 135 135-279 509-661 (821)
156 PRK05541 adenylylsulfate kinas 97.2 0.0015 3.2E-08 58.9 8.5 38 159-198 5-42 (176)
157 COG2812 DnaX DNA polymerase II 97.2 0.0013 2.8E-08 68.3 8.9 186 135-335 16-212 (515)
158 PRK08939 primosomal protein Dn 97.2 0.0019 4.2E-08 63.4 9.3 101 160-278 155-259 (306)
159 cd01394 radB RadB. The archaea 97.1 0.0029 6.3E-08 59.1 9.9 44 159-204 17-60 (218)
160 PRK07261 topology modulation p 97.1 0.0011 2.4E-08 59.3 6.8 21 163-183 2-22 (171)
161 COG0542 clpA ATP-binding subun 97.1 0.0012 2.6E-08 71.3 8.1 125 135-267 491-620 (786)
162 PRK04132 replication factor C 97.1 0.0067 1.5E-07 67.0 13.9 153 169-341 574-729 (846)
163 PF07728 AAA_5: AAA domain (dy 97.1 0.00018 3.8E-09 62.1 1.3 88 164-264 2-89 (139)
164 cd01393 recA_like RecA is a b 97.1 0.0031 6.7E-08 59.3 9.9 89 159-250 17-124 (226)
165 PRK12608 transcription termina 97.1 0.0025 5.4E-08 63.4 9.4 101 143-249 119-229 (380)
166 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0031 6.7E-08 59.7 9.8 90 159-249 17-124 (235)
167 KOG0991 Replication factor C, 97.1 0.0019 4.1E-08 58.9 7.7 104 135-265 27-138 (333)
168 PRK10787 DNA-binding ATP-depen 97.1 0.0013 2.7E-08 72.9 7.8 165 135-311 322-507 (784)
169 KOG2228 Origin recognition com 97.1 0.0086 1.9E-07 57.8 12.3 172 135-310 24-219 (408)
170 PF00910 RNA_helicase: RNA hel 97.1 0.00089 1.9E-08 54.9 5.0 21 164-184 1-21 (107)
171 COG2607 Predicted ATPase (AAA+ 97.1 0.0034 7.4E-08 57.7 8.9 122 133-280 58-183 (287)
172 PRK08699 DNA polymerase III su 97.0 0.0065 1.4E-07 60.2 11.7 71 239-309 112-184 (325)
173 COG1484 DnaC DNA replication p 97.0 0.00072 1.6E-08 64.6 4.7 82 160-258 104-185 (254)
174 PF08423 Rad51: Rad51; InterP 97.0 0.004 8.6E-08 59.7 9.2 89 160-249 37-142 (256)
175 PF13207 AAA_17: AAA domain; P 96.9 0.00069 1.5E-08 56.8 3.3 21 163-183 1-21 (121)
176 TIGR01243 CDC48 AAA family ATP 96.9 0.0094 2E-07 66.2 12.9 178 136-338 179-382 (733)
177 COG0466 Lon ATP-dependent Lon 96.9 0.0064 1.4E-07 64.4 10.7 165 134-311 322-509 (782)
178 TIGR00763 lon ATP-dependent pr 96.9 0.007 1.5E-07 67.5 11.7 164 135-310 320-505 (775)
179 PRK06835 DNA replication prote 96.9 0.0027 5.9E-08 62.9 7.5 102 162-279 184-288 (329)
180 PF00448 SRP54: SRP54-type pro 96.9 0.0073 1.6E-07 55.3 9.8 88 161-250 1-93 (196)
181 KOG1514 Origin recognition com 96.9 0.022 4.8E-07 60.2 14.1 140 135-277 396-546 (767)
182 COG1222 RPT1 ATP-dependent 26S 96.9 0.01 2.2E-07 57.8 10.8 176 136-337 152-357 (406)
183 PRK13695 putative NTPase; Prov 96.9 0.0013 2.9E-08 59.1 4.6 22 163-184 2-23 (174)
184 COG2884 FtsE Predicted ATPase 96.8 0.011 2.5E-07 52.5 10.1 64 224-287 139-204 (223)
185 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3E-07 64.9 13.4 177 136-337 454-657 (733)
186 cd03214 ABC_Iron-Siderophores_ 96.8 0.0099 2.1E-07 53.7 10.2 121 161-285 25-163 (180)
187 TIGR02238 recomb_DMC1 meiotic 96.8 0.0059 1.3E-07 60.1 9.2 90 159-249 94-200 (313)
188 KOG1969 DNA replication checkp 96.8 0.0037 8E-08 66.0 8.0 89 158-264 323-411 (877)
189 TIGR02902 spore_lonB ATP-depen 96.8 0.0032 6.9E-08 66.9 7.8 43 136-183 66-108 (531)
190 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.7E-08 65.2 4.2 49 136-184 52-101 (361)
191 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0057 1.2E-07 53.6 7.8 116 162-280 3-138 (159)
192 TIGR02012 tigrfam_recA protein 96.8 0.006 1.3E-07 60.0 8.5 85 159-250 53-143 (321)
193 PRK00771 signal recognition pa 96.8 0.019 4.1E-07 59.1 12.6 57 160-218 94-151 (437)
194 cd03247 ABCC_cytochrome_bd The 96.7 0.0061 1.3E-07 55.0 8.1 126 161-294 28-169 (178)
195 PRK06696 uridine kinase; Valid 96.7 0.0018 3.8E-08 60.9 4.7 42 140-183 3-44 (223)
196 PF14532 Sigma54_activ_2: Sigm 96.7 0.0013 2.8E-08 56.7 3.5 108 138-280 1-110 (138)
197 PRK06067 flagellar accessory p 96.7 0.011 2.4E-07 55.8 10.3 87 159-250 23-130 (234)
198 PLN03187 meiotic recombination 96.7 0.0078 1.7E-07 59.9 9.4 90 159-249 124-230 (344)
199 PF02562 PhoH: PhoH-like prote 96.7 0.004 8.7E-08 57.0 6.8 130 140-280 5-156 (205)
200 cd00983 recA RecA is a bacter 96.7 0.0069 1.5E-07 59.6 8.7 84 159-249 53-142 (325)
201 cd03228 ABCC_MRP_Like The MRP 96.7 0.0091 2E-07 53.5 8.9 119 160-285 27-160 (171)
202 KOG0730 AAA+-type ATPase [Post 96.7 0.015 3.2E-07 61.0 11.3 134 159-312 466-617 (693)
203 cd01120 RecA-like_NTPases RecA 96.7 0.011 2.4E-07 51.9 9.2 40 163-204 1-40 (165)
204 PRK11889 flhF flagellar biosyn 96.7 0.022 4.9E-07 57.1 11.9 103 160-265 240-347 (436)
205 COG4608 AppF ABC-type oligopep 96.7 0.012 2.6E-07 55.6 9.4 126 160-288 38-178 (268)
206 PF13671 AAA_33: AAA domain; P 96.6 0.005 1.1E-07 53.1 6.6 21 163-183 1-21 (143)
207 CHL00195 ycf46 Ycf46; Provisio 96.6 0.019 4.2E-07 59.9 11.9 156 159-337 257-429 (489)
208 PF13604 AAA_30: AAA domain; P 96.6 0.0028 6E-08 58.2 5.1 108 161-280 18-131 (196)
209 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0091 2E-07 57.1 8.7 87 161-249 69-172 (274)
210 PRK09354 recA recombinase A; P 96.6 0.0088 1.9E-07 59.3 8.7 85 159-250 58-148 (349)
211 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.3E-07 57.6 9.2 88 160-249 193-281 (282)
212 PF00158 Sigma54_activat: Sigm 96.6 0.0048 1.1E-07 55.0 6.0 131 137-279 1-143 (168)
213 PF00485 PRK: Phosphoribulokin 96.6 0.012 2.6E-07 53.9 8.7 79 163-244 1-87 (194)
214 PRK07667 uridine kinase; Provi 96.5 0.0059 1.3E-07 55.9 6.6 37 144-183 3-39 (193)
215 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0089 1.9E-07 62.0 8.2 97 135-251 190-293 (802)
216 COG0542 clpA ATP-binding subun 96.5 0.009 1.9E-07 64.8 8.7 153 135-309 170-345 (786)
217 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.017 3.8E-07 50.0 9.0 106 161-285 26-132 (144)
218 TIGR02239 recomb_RAD51 DNA rep 96.4 0.018 3.9E-07 56.9 9.7 90 159-249 94-200 (316)
219 cd03216 ABC_Carb_Monos_I This 96.4 0.0082 1.8E-07 53.3 6.6 118 161-285 26-147 (163)
220 COG1875 NYN ribonuclease and A 96.4 0.013 2.7E-07 57.3 8.2 132 139-280 228-388 (436)
221 TIGR02236 recomb_radA DNA repa 96.4 0.021 4.6E-07 56.5 10.2 58 159-217 93-154 (310)
222 cd02025 PanK Pantothenate kina 96.4 0.014 2.9E-07 54.6 8.3 74 163-238 1-76 (220)
223 PRK04301 radA DNA repair and r 96.4 0.014 3.1E-07 57.8 9.0 90 159-249 100-207 (317)
224 cd03222 ABC_RNaseL_inhibitor T 96.4 0.015 3.2E-07 52.3 8.1 113 161-295 25-146 (177)
225 COG1136 SalX ABC-type antimicr 96.4 0.031 6.8E-07 51.8 10.3 64 224-287 144-210 (226)
226 PRK10867 signal recognition pa 96.4 0.032 6.9E-07 57.4 11.4 25 159-183 98-122 (433)
227 COG0468 RecA RecA/RadA recombi 96.4 0.019 4.1E-07 55.2 9.1 89 158-249 57-150 (279)
228 PLN00020 ribulose bisphosphate 96.4 0.0058 1.3E-07 60.4 5.6 26 159-184 146-171 (413)
229 PRK09270 nucleoside triphospha 96.4 0.016 3.6E-07 54.5 8.6 26 158-183 30-55 (229)
230 PRK14974 cell division protein 96.4 0.035 7.5E-07 55.2 11.2 89 160-252 139-234 (336)
231 cd03223 ABCD_peroxisomal_ALDP 96.4 0.026 5.6E-07 50.2 9.4 117 160-284 26-152 (166)
232 cd01131 PilT Pilus retraction 96.4 0.0062 1.3E-07 56.0 5.5 110 162-283 2-112 (198)
233 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.034 7.3E-07 52.7 10.7 49 159-211 19-67 (237)
234 cd03238 ABC_UvrA The excision 96.3 0.019 4.2E-07 51.5 8.5 123 160-294 20-161 (176)
235 TIGR01817 nifA Nif-specific re 96.3 0.028 6.1E-07 60.1 11.2 48 134-184 195-242 (534)
236 PRK07132 DNA polymerase III su 96.3 0.11 2.3E-06 50.9 14.2 131 159-309 16-161 (299)
237 PLN03186 DNA repair protein RA 96.3 0.023 4.9E-07 56.6 9.7 90 159-249 121-227 (342)
238 PRK05800 cobU adenosylcobinami 96.3 0.0041 9E-08 55.5 4.1 80 163-249 3-85 (170)
239 KOG2035 Replication factor C, 96.3 0.024 5.2E-07 53.4 8.9 179 137-337 15-222 (351)
240 KOG0731 AAA+-type ATPase conta 96.3 0.05 1.1E-06 58.8 12.5 181 136-340 312-521 (774)
241 COG0572 Udk Uridine kinase [Nu 96.3 0.0082 1.8E-07 55.0 5.8 78 159-241 6-85 (218)
242 PRK14722 flhF flagellar biosyn 96.3 0.017 3.6E-07 58.1 8.4 89 160-250 136-225 (374)
243 PRK12723 flagellar biosynthesi 96.3 0.031 6.7E-07 56.6 10.4 89 160-251 173-265 (388)
244 PRK05439 pantothenate kinase; 96.3 0.026 5.7E-07 55.2 9.5 94 144-241 70-166 (311)
245 PF07724 AAA_2: AAA domain (Cd 96.3 0.003 6.5E-08 56.5 2.8 40 160-201 2-42 (171)
246 cd01125 repA Hexameric Replica 96.3 0.035 7.5E-07 52.7 10.3 21 163-183 3-23 (239)
247 TIGR00554 panK_bact pantothena 96.3 0.023 4.9E-07 55.2 9.0 80 159-240 60-141 (290)
248 COG1618 Predicted nucleotide k 96.2 0.0051 1.1E-07 53.1 3.9 24 161-184 5-28 (179)
249 TIGR00064 ftsY signal recognit 96.2 0.055 1.2E-06 52.3 11.5 89 159-250 70-164 (272)
250 cd03246 ABCC_Protease_Secretio 96.2 0.018 3.8E-07 51.7 7.4 117 161-284 28-160 (173)
251 cd03115 SRP The signal recogni 96.2 0.043 9.3E-07 49.1 9.9 21 163-183 2-22 (173)
252 PRK12726 flagellar biosynthesi 96.2 0.04 8.6E-07 55.1 10.3 91 159-251 204-296 (407)
253 PRK08533 flagellar accessory p 96.2 0.035 7.6E-07 52.3 9.6 49 160-212 23-71 (230)
254 PF13238 AAA_18: AAA domain; P 96.2 0.0042 9E-08 52.4 3.1 21 164-184 1-21 (129)
255 PTZ00301 uridine kinase; Provi 96.1 0.0083 1.8E-07 55.5 5.1 23 161-183 3-25 (210)
256 KOG0735 AAA+-type ATPase [Post 96.1 0.012 2.6E-07 62.1 6.6 73 160-250 430-504 (952)
257 PRK12724 flagellar biosynthesi 96.1 0.022 4.7E-07 57.8 8.2 23 161-183 223-245 (432)
258 KOG0744 AAA+-type ATPase [Post 96.1 0.015 3.3E-07 55.8 6.5 80 161-250 177-260 (423)
259 PRK15455 PrkA family serine pr 96.1 0.0061 1.3E-07 63.7 4.2 48 136-183 77-125 (644)
260 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.015 3.2E-07 54.1 6.5 121 161-286 29-160 (213)
261 PRK11608 pspF phage shock prot 96.1 0.016 3.4E-07 57.8 7.0 133 136-279 7-150 (326)
262 KOG0733 Nuclear AAA ATPase (VC 96.1 0.062 1.3E-06 56.0 11.2 155 161-337 545-718 (802)
263 PF12775 AAA_7: P-loop contain 96.0 0.0077 1.7E-07 58.2 4.7 94 145-257 23-117 (272)
264 PTZ00035 Rad51 protein; Provis 96.0 0.049 1.1E-06 54.3 10.5 90 159-249 116-222 (337)
265 TIGR02974 phageshock_pspF psp 96.0 0.024 5.1E-07 56.5 8.1 44 137-183 1-44 (329)
266 TIGR00959 ffh signal recogniti 96.0 0.036 7.7E-07 56.9 9.6 24 160-183 98-121 (428)
267 PRK15429 formate hydrogenlyase 96.0 0.022 4.7E-07 62.9 8.6 134 135-280 376-521 (686)
268 cd01122 GP4d_helicase GP4d_hel 96.0 0.067 1.5E-06 51.7 11.1 54 160-216 29-82 (271)
269 cd03230 ABC_DR_subfamily_A Thi 96.0 0.019 4.1E-07 51.5 6.7 119 161-285 26-160 (173)
270 PRK08233 hypothetical protein; 96.0 0.0058 1.2E-07 55.2 3.4 23 161-183 3-25 (182)
271 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.017 3.6E-07 53.3 6.4 121 161-288 29-159 (204)
272 PHA02244 ATPase-like protein 96.0 0.027 5.8E-07 56.1 8.1 21 163-183 121-141 (383)
273 COG1102 Cmk Cytidylate kinase 96.0 0.017 3.7E-07 50.0 5.8 44 163-219 2-45 (179)
274 KOG1532 GTPase XAB1, interacts 96.0 0.04 8.8E-07 51.7 8.6 87 159-248 17-123 (366)
275 KOG0734 AAA+-type ATPase conta 95.9 0.029 6.3E-07 57.4 8.2 49 136-184 305-360 (752)
276 PRK06547 hypothetical protein; 95.9 0.011 2.4E-07 52.9 4.8 26 159-184 13-38 (172)
277 PRK05480 uridine/cytidine kina 95.9 0.0069 1.5E-07 56.2 3.6 25 159-183 4-28 (209)
278 PF08433 KTI12: Chromatin asso 95.9 0.033 7.2E-07 53.6 8.2 22 162-183 2-23 (270)
279 PRK00889 adenylylsulfate kinas 95.9 0.027 5.9E-07 50.5 7.3 25 160-184 3-27 (175)
280 cd01121 Sms Sms (bacterial rad 95.9 0.062 1.4E-06 54.3 10.5 84 159-250 80-168 (372)
281 PRK05703 flhF flagellar biosyn 95.9 0.048 1E-06 56.2 9.7 88 161-250 221-309 (424)
282 TIGR00235 udk uridine kinase. 95.8 0.0078 1.7E-07 55.8 3.5 25 159-183 4-28 (207)
283 cd02019 NK Nucleoside/nucleoti 95.8 0.0066 1.4E-07 45.3 2.5 21 163-183 1-21 (69)
284 PF01583 APS_kinase: Adenylyls 95.8 0.015 3.2E-07 50.8 5.0 36 161-198 2-37 (156)
285 PRK12727 flagellar biosynthesi 95.8 0.032 7E-07 58.1 8.2 89 160-250 349-438 (559)
286 TIGR01069 mutS2 MutS2 family p 95.8 0.0099 2.2E-07 65.8 4.8 184 160-357 321-518 (771)
287 cd02027 APSK Adenosine 5'-phos 95.8 0.031 6.7E-07 48.7 7.0 21 163-183 1-21 (149)
288 PRK04328 hypothetical protein; 95.8 0.059 1.3E-06 51.5 9.5 42 159-202 21-62 (249)
289 PRK06762 hypothetical protein; 95.8 0.0076 1.7E-07 53.6 3.2 23 161-183 2-24 (166)
290 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.12 2.7E-06 47.7 11.5 23 161-183 34-56 (207)
291 PTZ00088 adenylate kinase 1; P 95.8 0.013 2.8E-07 55.0 4.8 21 163-183 8-28 (229)
292 cd02028 UMPK_like Uridine mono 95.8 0.016 3.5E-07 52.3 5.3 21 163-183 1-21 (179)
293 cd03229 ABC_Class3 This class 95.8 0.024 5.2E-07 51.1 6.4 23 161-183 26-48 (178)
294 PRK13539 cytochrome c biogenes 95.7 0.054 1.2E-06 50.1 8.8 63 233-298 138-202 (207)
295 PF00154 RecA: recA bacterial 95.7 0.039 8.5E-07 54.2 7.9 84 159-249 51-140 (322)
296 cd03244 ABCC_MRP_domain2 Domai 95.7 0.1 2.2E-06 48.8 10.6 23 161-183 30-52 (221)
297 PRK10733 hflB ATP-dependent me 95.7 0.079 1.7E-06 57.8 11.2 129 162-310 186-335 (644)
298 COG0563 Adk Adenylate kinase a 95.7 0.017 3.7E-07 51.9 5.0 22 163-184 2-23 (178)
299 TIGR00708 cobA cob(I)alamin ad 95.7 0.081 1.8E-06 47.0 9.1 118 162-280 6-140 (173)
300 PRK05917 DNA polymerase III su 95.7 0.23 5E-06 48.1 13.0 130 145-297 7-154 (290)
301 cd03215 ABC_Carb_Monos_II This 95.7 0.076 1.6E-06 48.0 9.3 23 161-183 26-48 (182)
302 PTZ00494 tuzin-like protein; P 95.7 0.26 5.6E-06 50.0 13.4 169 131-310 367-544 (664)
303 COG4618 ArpD ABC-type protease 95.7 0.055 1.2E-06 55.3 8.9 23 161-183 362-384 (580)
304 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.065 1.4E-06 49.3 8.9 25 160-184 25-49 (200)
305 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.029 6.2E-07 49.4 6.2 117 162-286 26-146 (157)
306 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.092 2E-06 49.6 9.6 124 162-285 31-204 (254)
307 PF03308 ArgK: ArgK protein; 95.6 0.026 5.7E-07 53.0 5.9 63 143-208 14-76 (266)
308 PRK14723 flhF flagellar biosyn 95.6 0.1 2.2E-06 57.1 11.2 24 161-184 185-208 (767)
309 PRK03839 putative kinase; Prov 95.6 0.0093 2E-07 53.9 3.0 22 163-184 2-23 (180)
310 KOG2004 Mitochondrial ATP-depe 95.6 0.02 4.4E-07 60.6 5.6 165 134-310 410-596 (906)
311 PRK05022 anaerobic nitric oxid 95.6 0.027 5.9E-07 59.7 6.8 134 134-279 186-331 (509)
312 COG1126 GlnQ ABC-type polar am 95.5 0.13 2.8E-06 47.0 9.8 123 161-286 28-202 (240)
313 COG0467 RAD55 RecA-superfamily 95.5 0.033 7.1E-07 53.6 6.7 42 159-202 21-62 (260)
314 PRK05973 replicative DNA helic 95.5 0.078 1.7E-06 49.9 8.9 49 160-212 63-111 (237)
315 TIGR01360 aden_kin_iso1 adenyl 95.5 0.011 2.4E-07 53.6 3.2 24 160-183 2-25 (188)
316 TIGR03575 selen_PSTK_euk L-ser 95.5 0.044 9.6E-07 54.4 7.6 21 164-184 2-22 (340)
317 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.064 1.4E-06 51.5 8.4 41 159-201 34-74 (259)
318 PRK04040 adenylate kinase; Pro 95.5 0.013 2.7E-07 53.4 3.3 23 161-183 2-24 (188)
319 PRK03846 adenylylsulfate kinas 95.4 0.047 1E-06 50.1 7.2 25 159-183 22-46 (198)
320 PRK05986 cob(I)alamin adenolsy 95.4 0.07 1.5E-06 48.2 7.9 118 161-280 22-158 (191)
321 PF06745 KaiC: KaiC; InterPro 95.4 0.032 7E-07 52.4 6.1 87 159-249 17-124 (226)
322 PF03205 MobB: Molybdopterin g 95.4 0.026 5.5E-07 48.7 4.9 39 162-201 1-39 (140)
323 PRK13531 regulatory ATPase Rav 95.4 0.015 3.2E-07 60.0 3.9 41 136-183 21-61 (498)
324 TIGR02858 spore_III_AA stage I 95.4 0.066 1.4E-06 51.6 8.1 128 143-284 97-233 (270)
325 COG0396 sufC Cysteine desulfur 95.4 0.24 5.2E-06 45.7 11.1 63 230-292 152-216 (251)
326 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.086 1.9E-06 49.6 8.8 42 159-202 18-59 (229)
327 PF07726 AAA_3: ATPase family 95.4 0.015 3.3E-07 48.6 3.2 27 164-192 2-28 (131)
328 TIGR02655 circ_KaiC circadian 95.3 0.13 2.8E-06 54.3 10.9 86 159-249 261-362 (484)
329 cd03213 ABCG_EPDR ABCG transpo 95.3 0.13 2.8E-06 47.0 9.7 24 160-183 34-57 (194)
330 cd03253 ABCC_ATM1_transporter 95.3 0.14 3E-06 48.4 10.2 61 232-294 147-208 (236)
331 PRK14721 flhF flagellar biosyn 95.3 0.11 2.3E-06 53.3 9.8 24 160-183 190-213 (420)
332 PF00006 ATP-synt_ab: ATP synt 95.3 0.065 1.4E-06 49.7 7.6 82 162-249 16-114 (215)
333 PRK00625 shikimate kinase; Pro 95.3 0.012 2.7E-07 52.6 2.8 21 163-183 2-22 (173)
334 PRK06002 fliI flagellum-specif 95.3 0.09 2E-06 54.0 9.2 86 161-249 165-263 (450)
335 COG1066 Sms Predicted ATP-depe 95.3 0.054 1.2E-06 54.0 7.3 81 160-249 92-177 (456)
336 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.05 1.1E-06 54.7 7.3 103 159-280 60-167 (362)
337 PRK06995 flhF flagellar biosyn 95.3 0.13 2.9E-06 53.4 10.5 40 161-200 256-295 (484)
338 COG0464 SpoVK ATPases of the A 95.3 0.068 1.5E-06 56.6 8.7 133 159-311 274-424 (494)
339 TIGR00150 HI0065_YjeE ATPase, 95.3 0.025 5.4E-07 48.0 4.3 39 143-184 7-45 (133)
340 cd03232 ABC_PDR_domain2 The pl 95.3 0.11 2.3E-06 47.5 8.9 23 161-183 33-55 (192)
341 TIGR03574 selen_PSTK L-seryl-t 95.2 0.05 1.1E-06 52.0 6.9 20 164-183 2-21 (249)
342 PRK09519 recA DNA recombinatio 95.2 0.079 1.7E-06 58.1 9.0 85 159-250 58-148 (790)
343 TIGR00041 DTMP_kinase thymidyl 95.2 0.095 2.1E-06 47.8 8.5 23 162-184 4-26 (195)
344 PRK00131 aroK shikimate kinase 95.2 0.015 3.2E-07 52.0 3.1 23 161-183 4-26 (175)
345 PRK06731 flhF flagellar biosyn 95.2 0.14 3.1E-06 49.2 9.8 102 161-264 75-180 (270)
346 TIGR00390 hslU ATP-dependent p 95.2 0.049 1.1E-06 55.2 6.8 49 135-183 12-69 (441)
347 TIGR02322 phosphon_PhnN phosph 95.2 0.015 3.4E-07 52.3 3.0 22 162-183 2-23 (179)
348 cd00984 DnaB_C DnaB helicase C 95.2 0.16 3.5E-06 48.1 10.2 53 160-215 12-64 (242)
349 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.013 2.8E-07 53.0 2.5 21 163-183 1-21 (183)
350 cd02023 UMPK Uridine monophosp 95.1 0.013 2.8E-07 53.8 2.5 21 163-183 1-21 (198)
351 PLN02348 phosphoribulokinase 95.1 0.12 2.6E-06 51.9 9.3 26 158-183 46-71 (395)
352 PRK09544 znuC high-affinity zi 95.1 0.12 2.6E-06 49.4 9.2 25 160-184 29-53 (251)
353 TIGR03522 GldA_ABC_ATP gliding 95.1 0.14 3.1E-06 50.4 9.9 23 161-183 28-50 (301)
354 PRK15453 phosphoribulokinase; 95.1 0.14 2.9E-06 49.2 9.2 79 159-239 3-89 (290)
355 PF13481 AAA_25: AAA domain; P 95.1 0.12 2.5E-06 47.1 8.7 42 162-203 33-82 (193)
356 PRK00409 recombination and DNA 95.1 0.022 4.7E-07 63.3 4.4 186 160-357 326-523 (782)
357 COG1223 Predicted ATPase (AAA+ 95.1 0.22 4.8E-06 46.6 10.0 178 135-337 121-319 (368)
358 PRK07276 DNA polymerase III su 95.0 0.42 9E-06 46.5 12.5 69 238-307 102-172 (290)
359 cd03240 ABC_Rad50 The catalyti 95.0 0.13 2.9E-06 47.4 8.8 61 232-294 131-195 (204)
360 cd02029 PRK_like Phosphoribulo 95.0 0.063 1.4E-06 51.1 6.6 77 163-241 1-85 (277)
361 cd00227 CPT Chloramphenicol (C 95.0 0.018 3.8E-07 51.8 2.9 22 162-183 3-24 (175)
362 TIGR01425 SRP54_euk signal rec 95.0 0.13 2.9E-06 52.6 9.5 24 160-183 99-122 (429)
363 cd03254 ABCC_Glucan_exporter_l 95.0 0.23 4.9E-06 46.7 10.5 23 161-183 29-51 (229)
364 PF13479 AAA_24: AAA domain 95.0 0.08 1.7E-06 49.2 7.3 31 162-202 4-34 (213)
365 PRK11823 DNA repair protein Ra 95.0 0.18 3.8E-06 52.5 10.5 84 159-250 78-166 (446)
366 COG1120 FepC ABC-type cobalami 95.0 0.22 4.8E-06 47.2 10.2 64 225-288 141-207 (258)
367 PF00625 Guanylate_kin: Guanyl 95.0 0.027 5.8E-07 51.0 3.9 36 161-198 2-37 (183)
368 cd02021 GntK Gluconate kinase 94.9 0.017 3.7E-07 50.3 2.5 21 163-183 1-21 (150)
369 COG1703 ArgK Putative periplas 94.9 0.04 8.6E-07 52.7 5.0 64 145-211 38-101 (323)
370 PRK06217 hypothetical protein; 94.9 0.018 3.9E-07 52.2 2.7 22 163-184 3-24 (183)
371 cd02024 NRK1 Nicotinamide ribo 94.9 0.017 3.6E-07 52.4 2.4 21 163-183 1-21 (187)
372 PRK14738 gmk guanylate kinase; 94.9 0.023 5.1E-07 52.5 3.5 25 159-183 11-35 (206)
373 cd03285 ABC_MSH2_euk MutS2 hom 94.9 0.029 6.4E-07 52.5 4.2 121 160-287 29-160 (222)
374 TIGR03263 guanyl_kin guanylate 94.9 0.02 4.4E-07 51.6 3.0 22 162-183 2-23 (180)
375 cd01124 KaiC KaiC is a circadi 94.9 0.055 1.2E-06 48.9 5.9 37 163-201 1-37 (187)
376 PRK10463 hydrogenase nickel in 94.9 0.12 2.5E-06 50.0 8.1 86 159-250 102-194 (290)
377 PRK13947 shikimate kinase; Pro 94.9 0.02 4.3E-07 51.2 2.8 21 163-183 3-23 (171)
378 cd02020 CMPK Cytidine monophos 94.9 0.018 3.9E-07 49.8 2.5 21 163-183 1-21 (147)
379 PRK10875 recD exonuclease V su 94.9 0.1 2.2E-06 56.2 8.6 52 161-214 167-221 (615)
380 COG0488 Uup ATPase components 94.9 0.074 1.6E-06 56.2 7.4 133 161-296 348-511 (530)
381 PF10236 DAP3: Mitochondrial r 94.8 1 2.3E-05 44.3 15.1 49 291-340 258-306 (309)
382 TIGR00416 sms DNA repair prote 94.8 0.18 4E-06 52.4 10.2 84 159-250 92-180 (454)
383 COG2401 ABC-type ATPase fused 94.8 0.038 8.1E-07 55.0 4.7 155 136-290 372-578 (593)
384 COG1936 Predicted nucleotide k 94.8 0.02 4.3E-07 50.2 2.5 20 163-182 2-21 (180)
385 COG4088 Predicted nucleotide k 94.8 0.12 2.5E-06 46.8 7.3 22 162-183 2-23 (261)
386 PRK10820 DNA-binding transcrip 94.8 0.08 1.7E-06 56.3 7.6 134 135-280 204-349 (520)
387 COG1643 HrpA HrpA-like helicas 94.7 0.21 4.5E-06 55.4 10.7 138 141-287 52-215 (845)
388 COG2274 SunT ABC-type bacterio 94.7 0.11 2.3E-06 56.9 8.5 24 160-183 498-521 (709)
389 TIGR03498 FliI_clade3 flagella 94.7 0.14 3.1E-06 52.3 8.8 86 161-249 140-239 (418)
390 PRK11388 DNA-binding transcrip 94.7 0.075 1.6E-06 58.2 7.3 117 135-265 325-441 (638)
391 PLN02924 thymidylate kinase 94.7 0.16 3.4E-06 47.5 8.4 26 159-184 14-39 (220)
392 PRK10751 molybdopterin-guanine 94.7 0.033 7.1E-07 49.6 3.6 25 160-184 5-29 (173)
393 PRK00300 gmk guanylate kinase; 94.7 0.026 5.7E-07 52.0 3.1 24 160-183 4-27 (205)
394 KOG1051 Chaperone HSP104 and r 94.6 0.2 4.4E-06 55.4 10.2 119 136-265 563-685 (898)
395 PF13245 AAA_19: Part of AAA d 94.6 0.074 1.6E-06 40.4 5.0 23 161-183 10-33 (76)
396 PRK14737 gmk guanylate kinase; 94.6 0.032 6.8E-07 50.7 3.5 24 160-183 3-26 (186)
397 PRK13949 shikimate kinase; Pro 94.6 0.025 5.3E-07 50.5 2.7 21 163-183 3-23 (169)
398 COG1428 Deoxynucleoside kinase 94.6 0.024 5.1E-07 51.5 2.6 24 161-184 4-27 (216)
399 cd00544 CobU Adenosylcobinamid 94.6 0.14 3E-06 45.7 7.5 78 164-249 2-82 (169)
400 PRK10416 signal recognition pa 94.6 0.27 5.8E-06 48.6 10.2 25 160-184 113-137 (318)
401 COG1419 FlhF Flagellar GTP-bin 94.6 0.16 3.6E-06 50.9 8.6 104 160-266 202-309 (407)
402 PRK09280 F0F1 ATP synthase sub 94.6 0.18 3.9E-06 52.0 9.2 88 161-249 144-247 (463)
403 PF04548 AIG1: AIG1 family; I 94.6 0.27 5.8E-06 45.7 9.6 22 163-184 2-23 (212)
404 PRK05201 hslU ATP-dependent pr 94.6 0.084 1.8E-06 53.5 6.6 49 135-183 15-72 (443)
405 KOG2170 ATPase of the AAA+ sup 94.6 0.12 2.5E-06 49.5 7.1 114 136-265 83-203 (344)
406 COG1131 CcmA ABC-type multidru 94.5 0.39 8.4E-06 47.0 11.1 23 161-183 31-53 (293)
407 KOG0739 AAA+-type ATPase [Post 94.5 1.2 2.6E-05 42.7 13.6 95 136-251 134-236 (439)
408 PRK14530 adenylate kinase; Pro 94.5 0.026 5.7E-07 52.6 2.9 21 163-183 5-25 (215)
409 COG0003 ArsA Predicted ATPase 94.5 0.069 1.5E-06 52.6 5.8 48 161-210 2-49 (322)
410 COG2019 AdkA Archaeal adenylat 94.5 0.034 7.5E-07 48.3 3.2 23 161-183 4-26 (189)
411 PRK10078 ribose 1,5-bisphospho 94.5 0.03 6.5E-07 50.9 3.0 23 162-184 3-25 (186)
412 PF03266 NTPase_1: NTPase; In 94.5 0.028 6.1E-07 50.1 2.8 21 164-184 2-22 (168)
413 PF08477 Miro: Miro-like prote 94.5 0.031 6.6E-07 46.4 2.9 21 164-184 2-22 (119)
414 PF03796 DnaB_C: DnaB-like hel 94.5 0.23 5E-06 47.7 9.3 56 160-218 18-73 (259)
415 cd00071 GMPK Guanosine monopho 94.5 0.027 5.9E-07 48.3 2.5 21 163-183 1-21 (137)
416 COG3640 CooC CO dehydrogenase 94.4 0.068 1.5E-06 49.3 5.1 42 163-206 2-44 (255)
417 cd01672 TMPK Thymidine monopho 94.4 0.086 1.9E-06 48.1 6.1 22 163-184 2-23 (200)
418 PRK13657 cyclic beta-1,2-gluca 94.4 0.27 5.9E-06 53.3 10.8 24 160-183 360-383 (588)
419 TIGR02868 CydC thiol reductant 94.4 0.22 4.7E-06 53.3 9.9 25 159-183 359-383 (529)
420 cd00464 SK Shikimate kinase (S 94.4 0.03 6.5E-07 48.9 2.8 20 164-183 2-21 (154)
421 COG4240 Predicted kinase [Gene 94.4 0.23 5E-06 45.6 8.3 83 159-242 48-135 (300)
422 cd03243 ABC_MutS_homologs The 94.4 0.059 1.3E-06 49.6 4.8 22 162-183 30-51 (202)
423 smart00534 MUTSac ATPase domai 94.4 0.047 1E-06 49.6 4.1 119 163-287 1-129 (185)
424 PRK12339 2-phosphoglycerate ki 94.4 0.036 7.9E-07 50.7 3.3 23 161-183 3-25 (197)
425 COG0714 MoxR-like ATPases [Gen 94.4 0.073 1.6E-06 53.2 5.7 63 136-210 25-87 (329)
426 TIGR01420 pilT_fam pilus retra 94.4 0.077 1.7E-06 53.3 5.9 110 161-281 122-231 (343)
427 cd04159 Arl10_like Arl10-like 94.4 0.17 3.6E-06 43.8 7.5 21 164-184 2-22 (159)
428 PRK12597 F0F1 ATP synthase sub 94.3 0.14 3E-06 52.9 7.8 88 161-249 143-246 (461)
429 PRK13975 thymidylate kinase; P 94.3 0.035 7.6E-07 50.8 3.1 22 162-183 3-24 (196)
430 PRK13948 shikimate kinase; Pro 94.3 0.036 7.7E-07 50.1 3.1 25 159-183 8-32 (182)
431 PRK13545 tagH teichoic acids e 94.3 0.38 8.3E-06 50.5 10.9 24 161-184 50-73 (549)
432 TIGR01313 therm_gnt_kin carboh 94.3 0.027 5.8E-07 49.9 2.2 20 164-183 1-20 (163)
433 PRK14264 phosphate ABC transpo 94.3 0.49 1.1E-05 46.6 11.4 24 160-183 70-93 (305)
434 PF06414 Zeta_toxin: Zeta toxi 94.3 0.12 2.6E-06 47.5 6.5 88 158-250 12-102 (199)
435 cd01136 ATPase_flagellum-secre 94.3 0.18 3.9E-06 49.8 8.1 85 161-249 69-168 (326)
436 cd00820 PEPCK_HprK Phosphoenol 94.3 0.042 9.1E-07 44.6 3.0 22 161-182 15-36 (107)
437 PRK08972 fliI flagellum-specif 94.2 0.17 3.7E-06 51.8 8.1 85 161-249 162-261 (444)
438 PRK08149 ATP synthase SpaL; Va 94.2 0.2 4.2E-06 51.4 8.5 85 161-249 151-250 (428)
439 PRK05922 type III secretion sy 94.2 0.18 3.9E-06 51.6 8.2 85 161-249 157-256 (434)
440 PRK00698 tmk thymidylate kinas 94.2 0.26 5.7E-06 45.2 8.8 23 162-184 4-26 (205)
441 PF03215 Rad17: Rad17 cell cyc 94.2 0.055 1.2E-06 57.0 4.6 60 135-198 19-78 (519)
442 COG1124 DppF ABC-type dipeptid 94.2 0.038 8.2E-07 51.3 3.0 24 160-183 32-55 (252)
443 cd01135 V_A-ATPase_B V/A-type 94.2 0.23 5E-06 47.6 8.4 88 162-249 70-175 (276)
444 PRK14527 adenylate kinase; Pro 94.2 0.039 8.4E-07 50.4 3.1 24 160-183 5-28 (191)
445 TIGR01447 recD exodeoxyribonuc 94.2 0.16 3.5E-06 54.6 8.2 22 162-183 161-182 (586)
446 COG0125 Tmk Thymidylate kinase 94.2 0.25 5.5E-06 45.5 8.4 50 161-212 3-52 (208)
447 smart00487 DEXDc DEAD-like hel 94.2 0.15 3.2E-06 46.0 7.0 22 162-183 25-47 (201)
448 cd01132 F1_ATPase_alpha F1 ATP 94.2 0.2 4.3E-06 48.0 7.9 82 162-249 70-170 (274)
449 PLN02200 adenylate kinase fami 94.2 0.043 9.3E-07 51.8 3.4 24 160-183 42-65 (234)
450 PRK05057 aroK shikimate kinase 94.1 0.039 8.3E-07 49.5 2.9 22 162-183 5-26 (172)
451 COG5635 Predicted NTPase (NACH 94.1 0.042 9.2E-07 61.8 3.9 138 160-303 221-371 (824)
452 PRK10923 glnG nitrogen regulat 94.1 0.16 3.5E-06 53.4 8.0 47 135-184 138-184 (469)
453 cd01878 HflX HflX subfamily. 94.1 0.099 2.1E-06 48.1 5.7 25 160-184 40-64 (204)
454 PRK12678 transcription termina 94.1 0.11 2.4E-06 54.5 6.4 96 146-249 405-512 (672)
455 PRK15064 ABC transporter ATP-b 94.1 0.4 8.7E-06 51.3 11.0 24 161-184 27-50 (530)
456 PRK08927 fliI flagellum-specif 94.1 0.27 5.8E-06 50.5 9.1 85 161-249 158-257 (442)
457 PF02374 ArsA_ATPase: Anion-tr 94.0 0.089 1.9E-06 51.8 5.5 45 162-208 2-46 (305)
458 COG0703 AroK Shikimate kinase 94.0 0.041 8.8E-07 48.6 2.7 22 162-183 3-24 (172)
459 TIGR00073 hypB hydrogenase acc 94.0 0.046 1E-06 50.6 3.3 26 158-183 19-44 (207)
460 PRK07594 type III secretion sy 94.0 0.21 4.6E-06 51.2 8.2 86 160-249 154-254 (433)
461 COG0194 Gmk Guanylate kinase [ 94.0 0.048 1E-06 48.5 3.1 24 161-184 4-27 (191)
462 PF03193 DUF258: Protein of un 94.0 0.081 1.8E-06 46.4 4.5 35 142-184 24-58 (161)
463 TIGR00455 apsK adenylylsulfate 94.0 0.34 7.3E-06 43.8 8.9 25 159-183 16-40 (184)
464 PRK08356 hypothetical protein; 94.0 0.051 1.1E-06 49.7 3.5 21 161-181 5-25 (195)
465 PF13086 AAA_11: AAA domain; P 93.9 0.097 2.1E-06 48.9 5.4 52 163-214 19-75 (236)
466 PRK13946 shikimate kinase; Pro 93.9 0.041 8.9E-07 49.9 2.7 23 161-183 10-32 (184)
467 PTZ00185 ATPase alpha subunit; 93.9 0.3 6.5E-06 50.7 9.0 86 162-249 190-298 (574)
468 TIGR03375 type_I_sec_LssB type 93.9 0.38 8.3E-06 53.3 10.8 24 160-183 490-513 (694)
469 PRK13765 ATP-dependent proteas 93.9 0.091 2E-06 56.7 5.6 74 135-217 31-104 (637)
470 PF13521 AAA_28: AAA domain; P 93.9 0.041 9E-07 48.7 2.6 20 164-183 2-21 (163)
471 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.071 1.5E-06 52.6 4.3 50 134-183 60-110 (358)
472 TIGR01818 ntrC nitrogen regula 93.9 0.26 5.6E-06 51.7 9.0 134 136-280 135-279 (463)
473 PLN02796 D-glycerate 3-kinase 93.8 0.34 7.4E-06 48.0 9.1 25 159-183 98-122 (347)
474 PRK09302 circadian clock prote 93.8 0.38 8.3E-06 51.1 10.3 86 159-249 271-372 (509)
475 PRK11650 ugpC glycerol-3-phosp 93.8 0.16 3.4E-06 51.3 6.9 23 161-183 30-52 (356)
476 COG2842 Uncharacterized ATPase 93.8 0.33 7.1E-06 46.5 8.5 100 161-268 94-193 (297)
477 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.17 3.7E-06 52.1 7.1 88 161-249 138-241 (449)
478 PF03029 ATP_bind_1: Conserved 93.8 0.069 1.5E-06 50.5 4.0 33 166-200 1-33 (238)
479 TIGR01192 chvA glucan exporter 93.8 0.3 6.6E-06 52.9 9.5 24 160-183 360-383 (585)
480 PRK04182 cytidylate kinase; Pr 93.8 0.05 1.1E-06 48.9 3.0 21 163-183 2-22 (180)
481 PRK11176 lipid transporter ATP 93.8 0.34 7.3E-06 52.6 9.9 24 160-183 368-391 (582)
482 PRK06793 fliI flagellum-specif 93.8 0.24 5.2E-06 50.8 8.1 87 160-249 155-255 (432)
483 TIGR01193 bacteriocin_ABC ABC- 93.8 0.33 7.2E-06 53.9 10.0 24 160-183 499-522 (708)
484 PRK13768 GTPase; Provisional 93.8 0.093 2E-06 50.2 4.9 23 161-183 2-24 (253)
485 TIGR03496 FliI_clade1 flagella 93.7 0.28 6.1E-06 50.2 8.6 85 161-249 137-236 (411)
486 PRK06761 hypothetical protein; 93.7 0.089 1.9E-06 50.8 4.7 23 162-184 4-26 (282)
487 cd03287 ABC_MSH3_euk MutS3 hom 93.7 0.098 2.1E-06 48.9 4.9 119 160-286 30-160 (222)
488 KOG0924 mRNA splicing factor A 93.7 0.58 1.3E-05 49.6 10.7 122 161-288 371-521 (1042)
489 TIGR02329 propionate_PrpR prop 93.7 0.13 2.8E-06 54.5 6.3 46 136-184 213-258 (526)
490 cd00046 DEXDc DEAD-like helica 93.7 0.33 7.2E-06 40.7 7.9 36 163-198 2-37 (144)
491 PRK11160 cysteine/glutathione 93.7 0.3 6.4E-06 52.8 9.2 24 160-183 365-388 (574)
492 CHL00081 chlI Mg-protoporyphyr 93.7 0.066 1.4E-06 53.4 3.9 46 133-183 15-60 (350)
493 COG1072 CoaA Panthothenate kin 93.7 0.4 8.7E-06 45.5 8.8 81 158-240 79-161 (283)
494 PRK14532 adenylate kinase; Pro 93.7 0.048 1E-06 49.5 2.7 20 164-183 3-22 (188)
495 PLN02318 phosphoribulokinase/u 93.7 0.083 1.8E-06 55.7 4.7 26 158-183 62-87 (656)
496 PRK09099 type III secretion sy 93.7 0.24 5.1E-06 51.0 7.9 87 160-249 162-262 (441)
497 PRK15115 response regulator Gl 93.7 0.29 6.2E-06 51.1 8.8 46 136-184 135-180 (444)
498 COG1100 GTPase SAR1 and relate 93.7 0.05 1.1E-06 50.6 2.9 23 162-184 6-28 (219)
499 COG0237 CoaE Dephospho-CoA kin 93.6 0.059 1.3E-06 49.4 3.2 23 161-183 2-24 (201)
500 cd03284 ABC_MutS1 MutS1 homolo 93.6 0.07 1.5E-06 49.7 3.7 22 162-183 31-52 (216)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-63 Score=539.66 Aligned_cols=500 Identities=25% Similarity=0.382 Sum_probs=385.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhhccCc--chhHHHHHh--chhccCCCchhhhhccccccccccccccccccc
Q 040597 3 LVSGVRQEVKKLTSNLQAIRAVLEDEEERQMQHD--KEWPTARLK--LQIEGVDDDNALALAPHKKTVCSFFRAVSNCFR 78 (515)
Q Consensus 3 ll~gv~~~v~~L~~~l~~i~~~L~~a~~~~~~~d--~~w~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (515)
.+.|+++.+..|+++|..++++++||++++.... ..|...+.+ ++.++..+.+......+... ..+.....-.+
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~--~~l~~~~~~~~ 99 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN--DLLSTRSVERQ 99 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHhhhhHHHHH
Confidence 4578899999999999999999999999876654 566666653 55555444332211110000 00000000000
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC---CCCCccccccccccCccccccchHHHHHHHHhccC
Q 040597 79 TFKQLSLRHDIAVKIREINEKLDDVASQKDRFKFVENLSNNV---KKPERVRTTSFIDEGEVFSGVDEKNELLNKLLCES 155 (515)
Q Consensus 79 ~~~~~~~r~~~a~~i~~i~~rl~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~ 155 (515)
...-...++..+..+..+..|+..+......++......... .....+...+..+... ||.+..++++.+.|..++
T Consensus 100 ~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~ 178 (889)
T KOG4658|consen 100 RLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD 178 (889)
T ss_pred HHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC
Confidence 001125677888888888888888888887777554221111 1111233344444445 999999999999999652
Q ss_pred CCCCCcEEEEEEecCCCcHHHHHHHHhcchh-hhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCc--ccHHHHHHH
Q 040597 156 SEQKGLHVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSL--SEFQSLMSH 232 (515)
Q Consensus 156 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~l~~~ 232 (515)
..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...++.+|+..++...+.- ...++++..
T Consensus 179 -----~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~ 253 (889)
T KOG4658|consen 179 -----VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASK 253 (889)
T ss_pred -----CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHH
Confidence 38999999999999999999999987 8999999999999999999999999999998754432 234788999
Q ss_pred HHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhc
Q 040597 233 IHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
|.+.|++|||||||||||+.. +|+.+..++|...+||+|++|||++.|+.. ++....+++..|+++|||.||.+.++
T Consensus 254 i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 254 LLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred HHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhc
Confidence 999999999999999999874 699999999998899999999999999998 77788999999999999999999998
Q ss_pred CCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh----hHHhhhhhhhhhc----ccccccccccccccccCCCC
Q 040597 312 FDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK----EWQRILDSEMWKV----KEVGQGLLTPLLLSYNDLSS 383 (515)
Q Consensus 312 ~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~----~w~~~l~~~~~~~----~~~~~~~~~~l~lsy~~Lp~ 383 (515)
.... ...+..+++|++++++|+|+|||++++|+.|+.+ +|+++.+...+.+ ++..+.++++|.+||+.||+
T Consensus 332 ~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~ 410 (889)
T KOG4658|consen 332 PNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE 410 (889)
T ss_pred cccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH
Confidence 6533 3445589999999999999999999999999999 8999998765552 23357899999999999996
Q ss_pred C------------------hHHHHHHHHHcCcccc-cccchHHHHHHHHHHHHHhcCcccccccCCCCCeeEEEEchhhH
Q 040597 384 N------------------SMELISLWMAQGYLNA-EEDEEMEMIREEHFYILAACSFFQEFKKDDDDNIMSCKMHDTVY 444 (515)
Q Consensus 384 ~------------------~~~Li~~wiaeg~i~~-~~~~~~e~~~~~~l~~Lv~rsllq~~~~~~~~~~~~~~mHdlv~ 444 (515)
+ ++.|+..|+||||+.+ ..+.++++.|+.|+.+|+++||++..... ++..+|+|||+||
T Consensus 411 ~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvR 488 (889)
T KOG4658|consen 411 ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVR 488 (889)
T ss_pred HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHH
Confidence 5 8899999999999998 55788999999999999999999876543 6678999999999
Q ss_pred HHHHHHHhcc---------CC-----------CCCceeeeeecc--------CCccCeeeeeeeeCCCCCCCccccCCCC
Q 040597 445 DFSQFRLLSF---------GT-----------GSLKYTPVGISK--------LISLRTLEKLVVSGGVDDSSTCRLTSLK 496 (515)
Q Consensus 445 ~~a~~~~~~~---------~~-----------~~~~~r~lsi~~--------~~~~~~l~~l~~~~~~~~~~~~~l~~~~ 496 (515)
|+|..+|++| .. .....||+|..+ .+....|++|.+.++..-....+-.+|.
T Consensus 489 e~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~ 568 (889)
T KOG4658|consen 489 EMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFR 568 (889)
T ss_pred HHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHh
Confidence 9999999963 10 112378888765 2345568888887654201111223488
Q ss_pred CCcccceeeccCC---CCCCCC
Q 040597 497 NLQLLRECGIEGL---GNVSCA 515 (515)
Q Consensus 497 ~l~~LrvL~l~g~---~~l~~~ 515 (515)
.|++||||||+|+ ..||++
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred hCcceEEEECCCCCccCcCChH
Confidence 8999999999987 557764
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-40 Score=326.67 Aligned_cols=256 Identities=36% Similarity=0.586 Sum_probs=205.4
Q ss_pred ccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC
Q 040597 140 GVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES 219 (515)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 219 (515)
|+.+++++.+.|... ..+.++|+|+||||+||||||..++++..++.+|+.++|++++...+...++..|+..++..
T Consensus 1 re~~~~~l~~~L~~~---~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN---SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTT---TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCC---CCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 688999999999864 26789999999999999999999999777899999999999999999999999999999887
Q ss_pred CC---CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhhhCC-cceeecc
Q 040597 220 AS---SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMGS-TNIIFIE 295 (515)
Q Consensus 220 ~~---~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~ 295 (515)
.. ...+.+.+...+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 43 3467778999999999999999999999876 4788888888877779999999999988876654 6789999
Q ss_pred CCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh----hHHhhhhhhhhhccc---ccc
Q 040597 296 QLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK----EWQRILDSEMWKVKE---VGQ 368 (515)
Q Consensus 296 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~----~w~~~l~~~~~~~~~---~~~ 368 (515)
+|+.++|++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+ +|..++++......+ ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987654 12334556789999999999999999999999665 899998876555432 356
Q ss_pred cccccccccccCCCCC------------------hHHHHHHHHHcCccccc
Q 040597 369 GLLTPLLLSYNDLSSN------------------SMELISLWMAQGYLNAE 401 (515)
Q Consensus 369 ~~~~~l~lsy~~Lp~~------------------~~~Li~~wiaeg~i~~~ 401 (515)
.+..++.+||+.||++ .+.|+++|++|||+.+.
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 7889999999999998 88999999999999764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-38 Score=363.66 Aligned_cols=299 Identities=18% Similarity=0.287 Sum_probs=231.5
Q ss_pred cccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe---CCc------
Q 040597 132 IDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDT------ 202 (515)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~---~~~------ 202 (515)
.+...+||++..++++..+|... ..+.++|+||||||+||||||+.+|+ ++..+|++.+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~---~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE---SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc---cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 34567999999999999888644 45789999999999999999999998 68889999888742 111
Q ss_pred -----cc-HHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE
Q 040597 203 -----FE-EIRVAKAIIEGLGESAS-SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV 275 (515)
Q Consensus 203 -----~~-~~~~~~~il~~l~~~~~-~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 275 (515)
+. ...+..+++..+..... .... ...+++.+.++|+||||||||+. ..|+.+.....+.++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344455555433211 1111 14567778999999999999765 578888776666778999999
Q ss_pred EcccHHHHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh---hH
Q 040597 276 TTRNESVARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK---EW 352 (515)
Q Consensus 276 TTR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~---~w 352 (515)
|||+..++..++...+|+++.|+.++||+||+++||.... ++..+.+++++|+++|+|+||||+++|++|+.+ +|
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999987777789999999999999999999997542 345688999999999999999999999999988 89
Q ss_pred HhhhhhhhhhcccccccccccccccccCCCCChHHHHHHHHHcCcccccccchHHHHH------HHHHHHHHhcCccccc
Q 040597 353 QRILDSEMWKVKEVGQGLLTPLLLSYNDLSSNSMELISLWMAQGYLNAEEDEEMEMIR------EEHFYILAACSFFQEF 426 (515)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~l~lsy~~Lp~~~~~Li~~wiaeg~i~~~~~~~~e~~~------~~~l~~Lv~rsllq~~ 426 (515)
+.+++++... ...++..+|++||+.|+++..+.+.+|+|+.|..........-.+ +..++.|+++||++..
T Consensus 408 ~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 408 MDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR 484 (1153)
T ss_pred HHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc
Confidence 9999886543 345789999999999987656778899999875432221111112 3348899999999753
Q ss_pred ccCCCCCeeEEEEchhhHHHHHHHHhc
Q 040597 427 KKDDDDNIMSCKMHDTVYDFSQFRLLS 453 (515)
Q Consensus 427 ~~~~~~~~~~~~mHdlv~~~a~~~~~~ 453 (515)
. + .+.|||++|++|+.++++
T Consensus 485 ~----~---~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 485 E----D---IVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred C----C---eEEhhhHHHHHHHHHHHh
Confidence 2 1 589999999999998754
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.56 E-value=8.6e-14 Score=158.15 Aligned_cols=291 Identities=14% Similarity=0.166 Sum_probs=170.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il 213 (515)
+.++-|. +|.+.|.. ....+++.|+|++|.||||++..+.+. ++.++|+++.. +.++..++..++
T Consensus 14 ~~~~~R~----rl~~~l~~----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 14 HNTVVRE----RLLAKLSG----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred cccCcch----HHHHHHhc----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 3455555 44554432 245789999999999999999988752 23689999864 446667777777
Q ss_pred HHhcCCCCC-------------cccHHHHHHHHHHHhc--CCcEEEEecccCCCCccccc-chhhhcccCCCCcEEEEEc
Q 040597 214 EGLGESASS-------------LSEFQSLMSHIHRSIE--GKKFFLLLDDVWDGDYNKWE-PFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 214 ~~l~~~~~~-------------~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~~~~~~-~l~~~l~~~~~gs~IivTT 277 (515)
..+....+. ..+...+...+...+. +.+++|||||++..+..... .+...++....+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777422111 0122333333333332 67999999999776544434 3444444555667898999
Q ss_pred ccHHHH---hhhCCcceeecc----CCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh
Q 040597 278 RNESVA---RMMGSTNIIFIE----QLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK 350 (515)
Q Consensus 278 R~~~v~---~~~~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~ 350 (515)
|...-. ..........+. +|+.+|+.+||...... +-..+.+..|.+.|+|+|+++..++..+...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 974211 111123345555 99999999999865421 1124557889999999999999888766543
Q ss_pred hHHhhhhhhhhhccc-cccccccccc-ccccCCCCChHH-HHHHHHHcCcccc-cccchHHHHHHHHHHHHHhcCccccc
Q 040597 351 EWQRILDSEMWKVKE-VGQGLLTPLL-LSYNDLSSNSME-LISLWMAQGYLNA-EEDEEMEMIREEHFYILAACSFFQEF 426 (515)
Q Consensus 351 ~w~~~l~~~~~~~~~-~~~~~~~~l~-lsy~~Lp~~~~~-Li~~wiaeg~i~~-~~~~~~e~~~~~~l~~Lv~rsllq~~ 426 (515)
.|. .....+.+.. ....+...+. -.+..||++... +...-+.+.|-.. ....+-.+.+...+++|.+.+++...
T Consensus 233 ~~~--~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 233 NSS--LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQR 310 (903)
T ss_pred CCc--hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEe
Confidence 221 0000111111 1122333332 236788876333 3333333322111 00001112346789999999997432
Q ss_pred ccCCCCCeeEEEEchhhHHHHHHHH
Q 040597 427 KKDDDDNIMSCKMHDTVYDFSQFRL 451 (515)
Q Consensus 427 ~~~~~~~~~~~~mHdlv~~~a~~~~ 451 (515)
.. .. ...|+.|++++++.+...
T Consensus 311 ~~-~~--~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 311 MD-DS--GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ec-CC--CCEEehhHHHHHHHHHHH
Confidence 11 11 236889999999987653
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=1.9e-11 Score=125.45 Aligned_cols=209 Identities=13% Similarity=0.087 Sum_probs=127.8
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.+..++||+++++++...|..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 446799999999999999854321 2334567899999999999999999853222212345677777777788899999
Q ss_pred HHHhcCC-CC-CcccHHHHHHHHHHHhc--CCcEEEEecccCCCC-cccccchhhhcc--cCCCCcE--EEEEcccHHHH
Q 040597 213 IEGLGES-AS-SLSEFQSLMSHIHRSIE--GKKFFLLLDDVWDGD-YNKWEPFFFCVK--NGLHGSK--ILVTTRNESVA 283 (515)
Q Consensus 213 l~~l~~~-~~-~~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~-~~~~~~l~~~l~--~~~~gs~--IivTTR~~~v~ 283 (515)
+.++... .+ ...+..++...+.+.+. ++..+||||+++... ....+.+...+. ....+++ +|.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9998762 22 22345666677777664 456899999997632 111222222221 1122333 55565544332
Q ss_pred hhhC-------CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHH----cCCCChhhHhhh
Q 040597 284 RMMG-------STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHK----CKGLPLAAKVIG 344 (515)
Q Consensus 284 ~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~----c~glPLai~~~~ 344 (515)
.... ....+.+.+++.++..+++..++...-... .-..+..+.|++. .|..+.|+.++-
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~--~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPG--VVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccC--CCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2211 134678999999999999998763221000 1112333444444 455667776653
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=5.9e-11 Score=115.19 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=117.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSE---FQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~---~~~l~~~l~~~ 236 (515)
...++.|+|++|+||||+++.+++.... ..+ ..+|+. ....+..+++..|+..++.+...... ...+...+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999874221 111 123332 33456778888999888765432211 12233333332
Q ss_pred h-cCCcEEEEecccCCCCcccccchhhhccc---CCCCcEEEEEcccHHHHhhhC----------CcceeeccCCChhhh
Q 040597 237 I-EGKKFFLLLDDVWDGDYNKWEPFFFCVKN---GLHGSKILVTTRNESVARMMG----------STNIIFIEQLTEEEC 302 (515)
Q Consensus 237 L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~---~~~gs~IivTTR~~~v~~~~~----------~~~~~~l~~L~~~~a 302 (515)
. .+++.+||+||+|..+...++.+...... ......|++|.... ...... ....+.+.+|+.++.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2 67889999999988776666666543321 12223456666543 211111 134678999999999
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhc
Q 040597 303 WSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILL 347 (515)
Q Consensus 303 ~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 347 (515)
..++...+...+......-..+..+.|++.|+|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988765332211122345788999999999999999988776
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.32 E-value=8.8e-12 Score=118.05 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=101.3
Q ss_pred cccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH------
Q 040597 137 VFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK------ 210 (515)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~------ 210 (515)
|+||+.|+++|.+.+..+ ....+.|+|+.|+|||+|++.+.+. .+..-..++|+.............
T Consensus 1 F~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHHH
Confidence 789999999999988642 3578999999999999999999883 322212445555444332221111
Q ss_pred ---HHHHHhcCCCC----------CcccHHHHHHHHHHHh--cCCcEEEEecccCCCC------cccccchhhhccc---
Q 040597 211 ---AIIEGLGESAS----------SLSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGD------YNKWEPFFFCVKN--- 266 (515)
Q Consensus 211 ---~il~~l~~~~~----------~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~------~~~~~~l~~~l~~--- 266 (515)
.+...+....+ ...........+.+.+ .+++++||+||+.... ......+...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 11111211100 1112222233333333 2446999999995433 1112233333333
Q ss_pred CCCCcEEEEEcccHHHHhh--------hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 267 GLHGSKILVTTRNESVARM--------MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 267 ~~~gs~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
..+.+.|+++|. ..+... .+....+.+++|+.+++++++....-.. ... +.-.+..++|+..+||+|.
T Consensus 154 ~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 154 QQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp -TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred cCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 333444444444 333322 2334459999999999999999865322 111 2235567999999999998
Q ss_pred hhHh
Q 040597 339 AAKV 342 (515)
Q Consensus 339 ai~~ 342 (515)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.31 E-value=1.1e-10 Score=122.78 Aligned_cols=292 Identities=16% Similarity=0.191 Sum_probs=180.2
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAI 212 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i 212 (515)
....+-|. ++++.|.. ..+.+.+.|..++|.|||||+..... ....-..+.|+++.+ +.++..++..+
T Consensus 18 ~~~~v~R~----rL~~~L~~----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRP----RLLDRLRR----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccH----HHHHHHhc----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHH
Confidence 34455554 46666653 35789999999999999999988874 222334689999876 45778888888
Q ss_pred HHHhcCCCCCc-------------ccHHHHHHHHHHHhc--CCcEEEEecccCCCCcccccc-hhhhcccCCCCcEEEEE
Q 040597 213 IEGLGESASSL-------------SEFQSLMSHIHRSIE--GKKFFLLLDDVWDGDYNKWEP-FFFCVKNGLHGSKILVT 276 (515)
Q Consensus 213 l~~l~~~~~~~-------------~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~~~~~~~-l~~~l~~~~~gs~IivT 276 (515)
+..++.-.+.. .+...+...+..-+. .+++.+||||.+-........ +...+.....+-.+|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 88887443321 223444555555443 468999999986644444443 45555566778899999
Q ss_pred cccHHHH---hhhCCcceeecc----CCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcch
Q 040597 277 TRNESVA---RMMGSTNIIFIE----QLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHS 349 (515)
Q Consensus 277 TR~~~v~---~~~~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~ 349 (515)
||+..-. ..--....++++ .|+.+|+-++|...... +--..-.+.+.+..+|.+-|+..++=.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9986322 111112334443 58999999999876521 112344678999999999999999888873
Q ss_pred h-hHHhhhhhhhhhccccccccccc-ccccccCCCCC-hHHHHHHHHHcCcccc-cccchHHHHHHHHHHHHHhcCcccc
Q 040597 350 K-EWQRILDSEMWKVKEVGQGLLTP-LLLSYNDLSSN-SMELISLWMAQGYLNA-EEDEEMEMIREEHFYILAACSFFQE 425 (515)
Q Consensus 350 ~-~w~~~l~~~~~~~~~~~~~~~~~-l~lsy~~Lp~~-~~~Li~~wiaeg~i~~-~~~~~~e~~~~~~l~~Lv~rsllq~ 425 (515)
+ .=...... +.+..+-+... ..--++.||++ +.-|...-+.+-|-.. ....+-++-|...+++|.+++|+-.
T Consensus 240 ~~~~~q~~~~----LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 240 NTSAEQSLRG----LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQ 315 (894)
T ss_pred CCcHHHHhhh----ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCcee
Confidence 3 10000000 00000000000 11124556666 5555555555555332 2223334567788999999999853
Q ss_pred cccCCCCCeeEEEEchhhHHHHHHH
Q 040597 426 FKKDDDDNIMSCKMHDTVYDFSQFR 450 (515)
Q Consensus 426 ~~~~~~~~~~~~~mHdlv~~~a~~~ 450 (515)
.-. .. ...|+.|+|+.||-+.-
T Consensus 316 ~Ld-d~--~~WfryH~LFaeFL~~r 337 (894)
T COG2909 316 RLD-DE--GQWFRYHHLFAEFLRQR 337 (894)
T ss_pred eec-CC--CceeehhHHHHHHHHhh
Confidence 322 22 23899999999997643
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=7.8e-10 Score=112.33 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=123.7
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh-ccc---ceeeEEEeCCcccHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK-RNF---EKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~ 209 (515)
+..++||++++++|...|..... +.....+.|+|++|+|||++++.+++...-. ... -..+|+++....+...++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 35799999999999999864221 2344678999999999999999999842111 111 135678887777778899
Q ss_pred HHHHHHhc---CCCC-CcccHHHHHHHHHHHh--cCCcEEEEecccCCCCcccccc-hhhhccc----CC--CCcEEEEE
Q 040597 210 KAIIEGLG---ESAS-SLSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGDYNKWEP-FFFCVKN----GL--HGSKILVT 276 (515)
Q Consensus 210 ~~il~~l~---~~~~-~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~~~~~~~-l~~~l~~----~~--~gs~IivT 276 (515)
..|+.++. ...+ ...+..++...+.+.+ .+++++||||+++.... ..+. +...+.. .. ....+|.+
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG-DDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-CCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999984 2222 1223445555555555 35678999999966421 1112 2211111 11 12234444
Q ss_pred cccHHHHhhhC-----C--cceeeccCCChhhhHHHHHHhhcCC-CCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 277 TRNESVARMMG-----S--TNIIFIEQLTEEECWSLFKRLAFFD-RSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 277 TR~~~v~~~~~-----~--~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
|........+. . ...+.+.+++.++..+++..++... ......++..+.+..++..+.|.|-.+
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 44332211111 1 2468899999999999999886421 111122333345556677777887443
No 10
>PF05729 NACHT: NACHT domain
Probab=99.17 E-value=2.4e-10 Score=102.08 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=89.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcc----cceeeEEEeCCcccHH---HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEI---RVAKAIIEGLGESASSLSEFQSLMSHIH 234 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~l~~~l~ 234 (515)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|.......... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 47899999999999999999875332222 4566777766543322 3333333333322111 111 122
Q ss_pred HH-hcCCcEEEEecccCCCCcc-------cccc-hhhhccc-CCCCcEEEEEcccHHH---HhhhCCcceeeccCCChhh
Q 040597 235 RS-IEGKKFFLLLDDVWDGDYN-------KWEP-FFFCVKN-GLHGSKILVTTRNESV---ARMMGSTNIIFIEQLTEEE 301 (515)
Q Consensus 235 ~~-L~~kr~LlVLDdvw~~~~~-------~~~~-l~~~l~~-~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~~ 301 (515)
.. -..++++||||+++..... .+.. +...++. ..++.++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999654321 1222 3334443 3568999999998765 3334445689999999999
Q ss_pred hHHHHHHhh
Q 040597 302 CWSLFKRLA 310 (515)
Q Consensus 302 a~~Lf~~~~ 310 (515)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=1.2e-09 Score=107.95 Aligned_cols=266 Identities=18% Similarity=0.146 Sum_probs=139.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+|+|+++.++++..++............+.|+|++|+|||+||+.+.+. ....+ ..+..+.... ...+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~-~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK-PGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-chhHHHHHH
Confidence 46899999999998888643221234566889999999999999999873 32222 1122111111 112222333
Q ss_pred HhcCCCC-CcccH----HHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhhhC--
Q 040597 215 GLGESAS-SLSEF----QSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMG-- 287 (515)
Q Consensus 215 ~l~~~~~-~~~~~----~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-- 287 (515)
.+....- -.+++ ....+.+...+.+.+..+|+++..+.. .+. ..+ .+.+-|..||+...+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LDL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ecC---CCeEEEEecCCccccCHHHHhh
Confidence 3322110 00000 112344555555566666666653221 111 111 22455666777654433211
Q ss_pred CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchhhHHhhhhhhhhhc-ccc
Q 040597 288 STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSKEWQRILDSEMWKV-KEV 366 (515)
Q Consensus 288 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~w~~~l~~~~~~~-~~~ 366 (515)
....+.+++++.++..+++.+.+...+. .-..+....|++.|+|.|-.+..++..+ |........... .+.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~----~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV----RDFAQVRGQKIINRDI 221 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH----HHHHHHcCCCCcCHHH
Confidence 1346789999999999999988753221 2224567889999999997665554432 211100000000 000
Q ss_pred cccccccccccccCCCCChHHHHHHHHHcCcccccccchHHH----------HHHHHHH-HHHhcCcccc
Q 040597 367 GQGLLTPLLLSYNDLSSNSMELISLWMAQGYLNAEEDEEMEM----------IREEHFY-ILAACSFFQE 425 (515)
Q Consensus 367 ~~~~~~~l~lsy~~Lp~~~~~Li~~wiaeg~i~~~~~~~~e~----------~~~~~l~-~Lv~rsllq~ 425 (515)
-......+..+|..++.+....++-.++. + ... ..+..+ .++..++ .|++.+|++.
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~-~-~~~-~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQ-F-QGG-PVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHH-h-CCC-cccHHHHHHHhCCCcchHHHhhhHHHHHcCCccc
Confidence 11222235677888887644444423331 1 110 112222 3456678 6999999964
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=7.3e-10 Score=110.53 Aligned_cols=270 Identities=19% Similarity=0.134 Sum_probs=139.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+|+|+++.++.+...+............+.|+|++|+|||+||+.+++. ....+ .++..+ .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 57999999999988777542111344567889999999999999999884 32222 112211 1111222333333
Q ss_pred HhcCCCC-CcccH----HHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhhhC--
Q 040597 215 GLGESAS-SLSEF----QSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMG-- 287 (515)
Q Consensus 215 ~l~~~~~-~~~~~----~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-- 287 (515)
.+....- -..++ ....+.+...+.+.+..+|+|+..+.. . +...+ .+.+-|..|++...+...+.
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~---~~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--S---IRLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--c---eeecC---CCceEEeecCCcccCCHHHHHh
Confidence 3322110 00000 112223344444555555555542211 0 11111 12344666777544332211
Q ss_pred CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchhhHHhhhhhhhhhccccc
Q 040597 288 STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSKEWQRILDSEMWKVKEVG 367 (515)
Q Consensus 288 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~w~~~l~~~~~~~~~~~ 367 (515)
....+.+++++.++..+++.+.+...+. .-..+.+..|++.|+|.|-.+..+...+. .|........-. ...-
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~--~~a~~~~~~~I~-~~~v 243 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR--DFAQVKGDGVIT-KEIA 243 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH--HHHHHcCCCCCC-HHHH
Confidence 1346899999999999999988754321 22345688999999999965544443321 222211100000 0011
Q ss_pred ccccccccccccCCCCChHHHHHHHHHcCccccc-cc-------chHHHHHHHHHH-HHHhcCccccc
Q 040597 368 QGLLTPLLLSYNDLSSNSMELISLWMAQGYLNAE-ED-------EEMEMIREEHFY-ILAACSFFQEF 426 (515)
Q Consensus 368 ~~~~~~l~lsy~~Lp~~~~~Li~~wiaeg~i~~~-~~-------~~~e~~~~~~l~-~Lv~rsllq~~ 426 (515)
......+...|..|+......++.++.. |-.+. .- ....+.+++.++ .|++.+|++..
T Consensus 244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 244 DKALDMLGVDELGLDEMDRKYLRTIIEK-FGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHhCCCcCCCCHHHHHHHHHHHHH-cCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 2233445677778877645555444433 21111 00 011223455666 89999999643
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.96 E-value=5.3e-09 Score=101.80 Aligned_cols=154 Identities=21% Similarity=0.308 Sum_probs=95.0
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-H
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHR-S 236 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~ 236 (515)
...+....+||++|+||||||+.+.. .....| ..++-..+-. .++..+.+.-++ .
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gv-----------------kdlr~i~e~a~~~~ 100 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGV-----------------KDLREIIEEARKNR 100 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccH-----------------HHHHHHHHHHHHHH
Confidence 35677888999999999999998887 344444 2223222221 223333333322 3
Q ss_pred hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE--EcccHHH---HhhhCCcceeeccCCChhhhHHHHHHhhc
Q 040597 237 IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV--TTRNESV---ARMMGSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 237 L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
..+++.+|++|.|+.-+..+-+.| ||...+|.-|+| ||-|+.. ....+...++.+++|+.++..+++.+.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 358999999999987665444444 444456776776 6666542 22234478999999999999999988442
Q ss_pred CCC-CCC-Cccc-hHHHHHHHHHHcCCCCh
Q 040597 312 FDR-SFE-DYEK-LEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 312 ~~~-~~~-~~~~-~~~~~~~I~~~c~glPL 338 (515)
... ... .... -+++..-|+..++|---
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 211 111 1111 23456667888888543
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.88 E-value=5.7e-09 Score=89.36 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=81.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhc---ccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR---NFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 236 (515)
..+++.|+|.+|+|||++++.+.++..... .-..++|++++...+...+...|+..++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999987421110 13456799998888999999999999998766655667777888887
Q ss_pred hcCCc-EEEEecccCCC-CcccccchhhhcccCCCCcEEEEEccc
Q 040597 237 IEGKK-FFLLLDDVWDG-DYNKWEPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 237 L~~kr-~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 279 (515)
+...+ .+||+|+++.. +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999665 4444555544433 456677777654
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=5.6e-08 Score=91.65 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=95.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
.+.+.|+|++|+|||+|++.+++. .......+.|+++.... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 457899999999999999999984 33334455677654210 0000 1111122 2
Q ss_pred cEEEEecccCCCC-ccccc-chhhhcccC-CCCcEEEE-Eccc---------HHHHhhhCCcceeeccCCChhhhHHHHH
Q 040597 241 KFFLLLDDVWDGD-YNKWE-PFFFCVKNG-LHGSKILV-TTRN---------ESVARMMGSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 241 r~LlVLDdvw~~~-~~~~~-~l~~~l~~~-~~gs~Iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
.-+|||||+|... ...|+ .+...+... ..|..+|+ |+.. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998643 23455 344444422 23555544 4543 3455555556789999999999999999
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhh
Q 040597 308 RLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGI 345 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 345 (515)
+.+...+ ..--+++..-|++.+.|..-++..+-.
T Consensus 172 ~~a~~~~----l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRG----IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 8886432 122345677789998887766654433
No 16
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.83 E-value=7.1e-08 Score=102.93 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=109.0
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhh---hcccc--eeeEEEeCCcccHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV---KRNFE--KVIWVCVSDTFEEIRV 208 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~~ 208 (515)
+..+.||++|+++|...|...-.+.....++.|+|++|.|||++++.|.+...- ....+ .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 457899999999999988653321233467789999999999999999874211 11222 2567877776778888
Q ss_pred HHHHHHHhcCCCCC-cccHHHHHHHHHHHhc---CCcEEEEecccCCCCcccccchhhhccc-CCCCcEEEE--EcccH-
Q 040597 209 AKAIIEGLGESASS-LSEFQSLMSHIHRSIE---GKKFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILV--TTRNE- 280 (515)
Q Consensus 209 ~~~il~~l~~~~~~-~~~~~~l~~~l~~~L~---~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~Iiv--TTR~~- 280 (515)
+..|..++....+. ..........+...+. +...+||||+++......-+.|...+.+ ...+++|++ +|.+-
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 89999888544332 2233344455554442 2346899999965322111223333332 223555544 33221
Q ss_pred -------HHHhhhCCcceeeccCCChhhhHHHHHHhhcC
Q 040597 281 -------SVARMMGSTNIIFIEQLTEEECWSLFKRLAFF 312 (515)
Q Consensus 281 -------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 312 (515)
.+...++ ...+...|++.++..+++..++..
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 1111122 234667999999999999998853
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=3.7e-08 Score=101.33 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=104.6
Q ss_pred CccccccchHHH---HHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 135 GEVFSGVDEKNE---LLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 135 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.+++|.+..+.. +.+++. ......+.|+|++|+||||||+.+++. .... |+.++.......-++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~-----~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE-----AGRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH-----cCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 357887766544 666654 234557888999999999999999873 3222 2322221111111112
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE--EcccHHHH---hh
Q 040597 212 IIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV--TTRNESVA---RM 285 (515)
Q Consensus 212 il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~---~~ 285 (515)
+.+..... ..+++.+|++|+++..+....+.+...+.. |..+++ ||.+.... ..
T Consensus 80 -----------------ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 -----------------VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred -----------------HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 22222211 145788999999987765555556555443 444444 34443211 12
Q ss_pred hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 286 MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 286 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
......+.+.+++.++...++.+.+..... ....-..+..+.|++.|+|.|..+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 233468899999999999999886532111 001223566788999999998766444
No 18
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=1.6e-07 Score=104.19 Aligned_cols=277 Identities=15% Similarity=0.148 Sum_probs=152.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceee---EEEeCCcc---cHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI---WVCVSDTF---EEIRVA 209 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~~~~~~---~~~~~~ 209 (515)
.++||+.+++.|...+.... .....++.+.|..|||||+|++.|.. .+.+.+...+ +-....+. .....+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~--~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS--KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh--CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 37899999999999987654 34566999999999999999999987 3433321111 11111111 112233
Q ss_pred HHHHHHh-------------------cCCCC-----------------C-----cccHH-----HHHHHHHHHh-cCCcE
Q 040597 210 KAIIEGL-------------------GESAS-----------------S-----LSEFQ-----SLMSHIHRSI-EGKKF 242 (515)
Q Consensus 210 ~~il~~l-------------------~~~~~-----------------~-----~~~~~-----~l~~~l~~~L-~~kr~ 242 (515)
++++.++ +.... . ....+ .....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 3333333 11100 0 00000 1222333333 45699
Q ss_pred EEEecccCCCCcccccchhhhcccCCC----CcE--EEEEcccH--HHHhhhCCcceeeccCCChhhhHHHHHHhhcCCC
Q 040597 243 FLLLDDVWDGDYNKWEPFFFCVKNGLH----GSK--ILVTTRNE--SVARMMGSTNIIFIEQLTEEECWSLFKRLAFFDR 314 (515)
Q Consensus 243 LlVLDdvw~~~~~~~~~l~~~l~~~~~----gs~--IivTTR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 314 (515)
++|+||+.+.|....+.+......... ... .+.|.+.. .+.........+.|.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 999999977765555544443332210 112 23333332 122222345789999999999999998876432
Q ss_pred CCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh----------hHHhhhhhhhhhcccccccccccccccccCCCCC
Q 040597 315 SFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK----------EWQRILDSEMWKVKEVGQGLLTPLLLSYNDLSSN 384 (515)
Q Consensus 315 ~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~----------~w~~~l~~~~~~~~~~~~~~~~~l~lsy~~Lp~~ 384 (515)
.....+..+.|+++..|+|+.+..+-..+... .|..-..+. .. ......+...+..-.+.||..
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~-~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GI-LATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CC-chhhHHHHHHHHHHHhcCCHH
Confidence 22334567889999999999999999888775 232111110 00 011122344466677888886
Q ss_pred hHHHHHHHHHcCcccccc------cchHHHHHHHHHHHHHhcCcc
Q 040597 385 SMELISLWMAQGYLNAEE------DEEMEMIREEHFYILAACSFF 423 (515)
Q Consensus 385 ~~~Li~~wiaeg~i~~~~------~~~~e~~~~~~l~~Lv~rsll 423 (515)
.+.+.+.-...|---.-+ .......+...++.|....++
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~ 354 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLIL 354 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhcee
Confidence 444444433334211100 113344455555555555554
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=1.2e-07 Score=89.41 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=98.1
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS 222 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 222 (515)
.++.+.+++. ......+.|+|++|+|||+||+.+++. ........++++++.-... .
T Consensus 25 ~~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~------~---------- 81 (226)
T TIGR03420 25 LLAALRQLAA-----GKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA------D---------- 81 (226)
T ss_pred HHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh------H----------
Confidence 4555555543 234568899999999999999999874 3333334556655432110 0
Q ss_pred cccHHHHHHHHHHHhcCCcEEEEecccCCCCcc-cc-cchhhhccc-CCCCcEEEEEcccHH---------HHhhhCCcc
Q 040597 223 LSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN-KW-EPFFFCVKN-GLHGSKILVTTRNES---------VARMMGSTN 290 (515)
Q Consensus 223 ~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~ 290 (515)
. .+...+.+ .-+|||||++..+.. .| +.+...+.. ...+..+|+||+... +...+....
T Consensus 82 ----~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 82 ----P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred ----H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 0 01111222 238999999764432 22 334444432 123447888887432 222222245
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGI 345 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 345 (515)
.+.+.+++.++...++...+.... ..--.+..+.|.+.+.|+|..+..+..
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 789999999999999887553211 112245567788889999887766543
No 20
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.72 E-value=3.1e-08 Score=90.20 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.|+||+++++++...|... .....+.+.|+|++|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA--QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT--SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 2456799999999999999999998884
No 21
>PTZ00202 tuzin; Provisional
Probab=98.68 E-value=1.6e-06 Score=86.33 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=103.4
Q ss_pred cccccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHH
Q 040597 130 SFIDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 130 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 209 (515)
.+.+.+.|+||+.+..++...|...+ ....+++.|+|++|+|||||++.+..... +. .++++.. +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d--~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLD--TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccC--CCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHH
Confidence 34556789999999999999886433 23456999999999999999999886321 21 3333333 678999
Q ss_pred HHHHHHhcCCCCCc--ccHHHHHHHHHHHh-c-CCcEEEEecccCCCCc-ccccchhhhcccCCCCcEEEEEcccHHHHh
Q 040597 210 KAIIEGLGESASSL--SEFQSLMSHIHRSI-E-GKKFFLLLDDVWDGDY-NKWEPFFFCVKNGLHGSKILVTTRNESVAR 284 (515)
Q Consensus 210 ~~il~~l~~~~~~~--~~~~~l~~~l~~~L-~-~kr~LlVLDdvw~~~~-~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 284 (515)
+.|+.+|+.+.... .-...+.+.+.+.- . +++.+||+-=-.-.+. ..+++.. .|.....-|+|++----+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 99999999743321 11234444444332 3 6677777642211110 1122211 2223334567777655444332
Q ss_pred hh---CCcceeeccCCChhhhHHHHHHh
Q 040597 285 MM---GSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 285 ~~---~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
.. ..-..|.+++++.++|..+..+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 21 22457889999999988876654
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=3.3e-07 Score=91.98 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=108.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcccH-HHHHH--
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEE-IRVAK-- 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~-~~~~~-- 210 (515)
.+++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+.+... ...+. ..+.+++++-... ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~-----~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS-----PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcC
Confidence 4688999988888887753 2334678999999999999999887311 12222 2334444331100 00000
Q ss_pred -HHHHHhcCC-CCCcccHHHHHH---HHHHHh--cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-H
Q 040597 211 -AIIEGLGES-ASSLSEFQSLMS---HIHRSI--EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-V 282 (515)
Q Consensus 211 -~il~~l~~~-~~~~~~~~~l~~---~l~~~L--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v 282 (515)
.....++.. .......+.+.. ...... .+.+-+||+||+...+......+...+......+++|+||.+.. +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 000011111111 111111 23455899999966554445556666654445567777775432 2
Q ss_pred Hhhh-CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 283 ARMM-GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 283 ~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
...+ .....+.+.+++.++...++.+.+...+. .-..+....+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2221 23457889999999999888887643221 1224567788899988765543
No 23
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=5.2e-07 Score=89.41 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=115.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcch----hhhcccceeeEEEe-CCcccHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNND----EVKRNFEKVIWVCV-SDTFEEIRVA 209 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~~ 209 (515)
.+++|-+.-.+.+.+++..+ .-.....++|+.|+||||+|+.+++.. ....|+|...|... +......+ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 35778777888888888532 345688999999999999999888631 11234555445432 11122212 2
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHH-hh-hC
Q 040597 210 KAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVA-RM-MG 287 (515)
Q Consensus 210 ~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~ 287 (515)
+++...+... -..+++=++|+|+++..+...++.+...+.....++.+|++|.+.... .. ..
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222111 113456678888887777778999999998877888888888665322 11 22
Q ss_pred CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 288 STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 288 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
....+.+.++++++....+.+.... ...+.++.++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 3578999999999998877654311 1123467789999998875543
No 24
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=1.7e-07 Score=81.30 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=71.3
Q ss_pred ccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhc
Q 040597 138 FSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLG 217 (515)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 217 (515)
+|++..+..+...+.. ...+.+.|+|++|+|||++++.+++. ....-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~-----~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALEL-----PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 3677788888887763 23468899999999999999999984 32222345666655533322111111000
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC------CCCcEEEEEcccH
Q 040597 218 ESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG------LHGSKILVTTRNE 280 (515)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~------~~gs~IivTTR~~ 280 (515)
............++.+||+||++.........+...+... ..+..||+||...
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222456789999999754222223333333322 3577888888754
No 25
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=8.6e-08 Score=100.09 Aligned_cols=197 Identities=20% Similarity=0.162 Sum_probs=114.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|-+.-.+.|.+++... .-...+.++|++|+||||+|+.+++.......+...+|.|.+-.. .......-+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 36888888777777777643 234667999999999999999988743222223334444322100 0000000000
Q ss_pred HhcCC-CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcc-cHHHHhhh-CCcc
Q 040597 215 GLGES-ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTR-NESVARMM-GSTN 290 (515)
Q Consensus 215 ~l~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~~-~~~~ 290 (515)
.+... ......+.++...+... ..+++-++|+|+++..+...++.+...+......+.+|++|. ...+...+ ....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00000 00111222222222221 235667999999987776677778777766545555555554 33333322 2356
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
.+.+.+++.++....+.+.+...+- .-..+....|++.++|.+--+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 8999999999999999887743321 112456788999999988544
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=4.2e-07 Score=96.60 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=114.5
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+..++.|.+++..+ .-...+.++|..|+||||+|+.+.+.......++. ..+..-...+.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHhc
Confidence 47899999999898888633 33566789999999999999988764221111100 01111111111111
Q ss_pred H-----hcCCCCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHh
Q 040597 215 G-----LGESASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VAR 284 (515)
Q Consensus 215 ~-----l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~ 284 (515)
. +..+......++++.+.+... ..++.-++|||+++..+...++.|...+.......++|+||.+.. +..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 0 000000011122222222211 134556889999988877778888887776556777888777643 322
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC-hhhHh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP-LAAKV 342 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~ 342 (515)
. .+....|.+..++.++..+.+.+.+...+- .-..+..+.|++.++|.. -|+..
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 233578999999999999999887643221 123456778999998855 35444
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=6.7e-07 Score=90.35 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.+.+......... ..++..-....++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc
Confidence 46889998888888888643 3356789999999999999999887321111110 000000001111111
Q ss_pred HhcC-----CC---CCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 GLGE-----SA---SSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~l~~-----~~---~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
.... .. ....+..++.+.+... ..+++-++|+|+++..+...++.+...+........+|++|.+ ..+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 1000 00 0011112222221111 1245569999999877666677777777665556667766654 33332
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
. .+....+++.+++.++..+.+...+...+. .-..+.+..|++.++|.|-.+
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 223568999999999999888876643221 122455778899999988543
No 28
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.9e-06 Score=86.36 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=129.6
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-e-eeEEEeCCcccHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-K-VIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~~~~~~~~~~~~~~il 213 (515)
.+.+|+.+++++...|...-. +..+.-+.|+|.+|.|||+.++.+.+ +++.... . +++|++-...+..+++..|+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 489999999999988865332 22333489999999999999999998 4444332 2 68999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHh--cCCcEEEEecccCCCCcccccchhhhcccCCC-CcEE--EEEcccHHHHhh---
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLH-GSKI--LVTTRNESVARM--- 285 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~-gs~I--ivTTR~~~v~~~--- 285 (515)
.+++..+.......+..+.+.+.+ .++.+++|||+++......-+.+...+..... .++| |..+-+-.....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999855444455566667777766 46889999999965332221334444433222 3433 333333322222
Q ss_pred -----hCCcceeeccCCChhhhHHHHHHhhcCCC-CCCCccchHHHHHHHHHHcCC-CChhhHhh
Q 040597 286 -----MGSTNIIFIEQLTEEECWSLFKRLAFFDR-SFEDYEKLEPIGRKIAHKCKG-LPLAAKVI 343 (515)
Q Consensus 286 -----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~~~~I~~~c~g-lPLai~~~ 343 (515)
++. ..+...|-+.+|-...+..++-..- .....+..-+.+..++..-+| .-.||..+
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222 2377888899999999988875322 112333444444444444443 33444443
No 29
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=2e-07 Score=79.47 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=77.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
+++.|.|+.|+|||||+++++++.. ....+++++..+....... ..+ +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 6899999999999999999987422 3355677776664321100 000 2233333344478
Q ss_pred EEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhh------hCCcceeeccCCChhh
Q 040597 242 FFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARM------MGSTNIIFIEQLTEEE 301 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~------~~~~~~~~l~~L~~~~ 301 (515)
.+|+||++... ..|......+-+..+..+|++|+.+...... .+....+++.||+..|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999554 4677665555554456789999988765532 1224567899998776
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=7.1e-07 Score=96.72 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=114.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccce-eeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|-+.-+..|.+++..+ .-...+.++|+.|+||||+|+.+++.......... .+-.| .....|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--------~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--------SSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--------hHHHHHh
Confidence 46899999888888888643 23456689999999999999999874221111100 00000 0000010
Q ss_pred HH-------hcCC-CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHH
Q 040597 214 EG-------LGES-ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVA 283 (515)
Q Consensus 214 ~~-------l~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~ 283 (515)
.. +... .....++.++.+.+... ..+++-++|||+++..+....+.|...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 00111222333222211 2467779999999888877888888877765556666665544 4443
Q ss_pred hh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 284 RM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 284 ~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
.. ......|.+.+|+.++....+.+.+...+ ..-..+.+..|++.++|.|--+.
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 23357899999999999999887664321 12234567889999999885443
No 31
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=6.9e-07 Score=85.77 Aligned_cols=159 Identities=22% Similarity=0.257 Sum_probs=98.8
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
....+.+.+||++|+||||||+.+....+ .+ ...||..|-...-..-.+.|+++-.. ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 35678889999999999999999987422 22 25577776644444444444443211 1124
Q ss_pred cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE--EcccHHH---HhhhCCcceeeccCCChhhhHHHHHHhhc-
Q 040597 238 EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV--TTRNESV---ARMMGSTNIIFIEQLTEEECWSLFKRLAF- 311 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~- 311 (515)
..+|.+|.+|.|+.-+..+-+.+ ||...+|+-++| ||-|+.. +..+....++.|+.|+.++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 67899999999976554444443 455556776666 7776643 22344567899999999999888887432
Q ss_pred -CC-CCC--CCcc----chHHHHHHHHHHcCCCCh
Q 040597 312 -FD-RSF--EDYE----KLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 312 -~~-~~~--~~~~----~~~~~~~~I~~~c~glPL 338 (515)
+. ... ..+. -...+.+-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 110 1111 123455667777877553
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1e-06 Score=92.70 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=112.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+...+.|.+++..+ .-...+.++|+.|+||||+|+.+.+...... ++.. .++..-...+.|..
T Consensus 15 ddVIGQe~vv~~L~~aI~~g----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhc
Confidence 47899999999998888643 3357889999999999999998876321111 1100 00111111111111
Q ss_pred HhcC-----CCCCcccHHHHHHHHHH---H-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHH-
Q 040597 215 GLGE-----SASSLSEFQSLMSHIHR---S-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVA- 283 (515)
Q Consensus 215 ~l~~-----~~~~~~~~~~l~~~l~~---~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~- 283 (515)
.-.. ........+++.+.+.. . ..++.-++|+|+++..+....+.+...+.....+..+|++|.+. .+.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 00001122222222111 1 23566789999998877667777877777655566777777653 222
Q ss_pred hhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 284 RMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 284 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
........+.+.+++.++....+.+.+...+. .--.+....|++.++|.+-.+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 22234578999999999999988877643221 222455677888999877444
No 33
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=8.7e-07 Score=93.02 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=113.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc--cceeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.++||-+.-++.|.+.+..+ .-...+.++|..|+||||+|+.+.+....... -.... +..+..-...+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~g----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHH
Confidence 46899999888888888643 33567789999999999999988763221100 00000 0000001111111
Q ss_pred HHH-----hcCCCCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcc-cHHH
Q 040597 213 IEG-----LGESASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTR-NESV 282 (515)
Q Consensus 213 l~~-----l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v 282 (515)
... +.........++++.+.+... ..++.-++|||+++..+...++.|...+..-..+..+|++|. ...+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 100 000000111223222222221 145667999999988887778888877765445556555554 4444
Q ss_pred Hhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 283 ARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 283 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
... .+....|.+..++.++..+.+.+.+...+. ....+..+.|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 432 223578999999999999988876643221 12234567899999998865433
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.56 E-value=3.1e-07 Score=83.82 Aligned_cols=175 Identities=23% Similarity=0.243 Sum_probs=91.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+|+|.+.-+..+.-.+.........+..+.+||++|+||||||..+.+ .....|. +.+.+. ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~---------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE---------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC-------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh----------
Confidence 5799988877776544432211134678899999999999999999998 3444442 222211 00
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC--------CC-----------CcEEEE
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG--------LH-----------GSKILV 275 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~--------~~-----------gs~Iiv 275 (515)
...++...+.. + +++-+|.+|.++..+...-+.|.+++.++ ++ =+-|=.
T Consensus 88 ----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 88 ----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 01111121211 1 23456677887665543333343333211 11 123455
Q ss_pred EcccHHHHhhhCC--cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 276 TTRNESVARMMGS--TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 276 TTR~~~v~~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
|||...+...+.. .-+..++..+.+|-.++..+.+..-+ .+-..+.+.+|++.|.|-|--..
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHH
Confidence 8887655544333 23457999999999999987764322 23345678999999999996443
No 35
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=1.5e-06 Score=93.43 Aligned_cols=203 Identities=20% Similarity=0.158 Sum_probs=121.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc---ceeeEEEeCC---cccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSD---TFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~---~~~~~~~ 208 (515)
++++|+...+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS-----PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 4689999999888877742 234579999999999999999998753322222 1234554432 1122222
Q ss_pred HHHH---------------HHHhcCCCC----------------Cccc-HHHHHHHHHHHhcCCcEEEEecccCCCCccc
Q 040597 209 AKAI---------------IEGLGESAS----------------SLSE-FQSLMSHIHRSIEGKKFFLLLDDVWDGDYNK 256 (515)
Q Consensus 209 ~~~i---------------l~~l~~~~~----------------~~~~-~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~ 256 (515)
...+ +...+.... +... ....+..+.+.+++++++++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 111111000 0001 1235678888888999999988888777777
Q ss_pred ccchhhhcccCCCCcEEEE--EcccHHH-Hhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHH
Q 040597 257 WEPFFFCVKNGLHGSKILV--TTRNESV-ARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHK 332 (515)
Q Consensus 257 ~~~l~~~l~~~~~gs~Iiv--TTR~~~v-~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 332 (515)
|+.+...+....+...+++ ||++... ... ......+.+.+++.++.+.++.+.+..... . -..++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHC
Confidence 8888877776655554555 5664431 111 122346789999999999999987643211 1 113445556665
Q ss_pred cCCCChhhHhhhhh
Q 040597 333 CKGLPLAAKVIGIL 346 (515)
Q Consensus 333 c~glPLai~~~~~~ 346 (515)
+..-+-|+..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 55556677666544
No 36
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.6e-06 Score=90.26 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=112.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccce-eeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|-+.-+..+...+..+ .-...+.++|+.|+||||+|+.+++.......... ..+..+. .-.....+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~----~C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE----QCTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC----CChHHHHHh
Confidence 36788888888887766532 33567899999999999999999874221111100 0000000 000111111
Q ss_pred HH-------hcC-CCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHHH
Q 040597 214 EG-------LGE-SASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESVA 283 (515)
Q Consensus 214 ~~-------l~~-~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~ 283 (515)
.. +.. ......++..+.+..... ..+++-++|+|+++..+...++.+...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 10 000 001111222222222111 245677899999988777788888888876555666554 55555554
Q ss_pred hhh-CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 284 RMM-GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 284 ~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
..+ .....+++.+++.++....+.+.+...+. .-..+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 432 23567999999999999999888753321 112345677889999876433
No 37
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.52 E-value=2.2e-06 Score=85.35 Aligned_cols=180 Identities=13% Similarity=0.074 Sum_probs=104.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe--CCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i 212 (515)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+.+.. ....+. ..++.+ +...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-----~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-----NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHH
Confidence 46889999998888888532 33457999999999999999998731 111221 122222 2211111 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHh-hhCCcc
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVAR-MMGSTN 290 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~~~~~~ 290 (515)
+..+....+ .....+-+|++|+++.........+...+......+.+|+++... .+.. ......
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111111000 001235689999986654444556666665544556677766432 1211 112244
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
.+++.+++.++....+...+...+. .-..+....+++.++|.+--+
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 7899999999998888877643221 122456788899999887654
No 38
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.8e-06 Score=90.56 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=112.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-------------------ccceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 195 (515)
.+++|-+..+..+.+.+..+ .....+.++|+.|+||||+|+.+++...... .|...+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 46889999888888888632 3346688999999999999998876311100 111122
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
+++...... ..+...+.+.+... ..+++-++|+|+++..+...++.|...+......+.+|
T Consensus 92 eidaas~~g------------------vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRTG------------------VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EeecccccC------------------HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 222111111 11222333333221 24567799999998777777788888887655566566
Q ss_pred E-EcccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh-hhHhh
Q 040597 275 V-TTRNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL-AAKVI 343 (515)
Q Consensus 275 v-TTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 343 (515)
+ ||....+... ......+++.+++.++....+.+.+...+ ..-..+....|++.++|.+- |+..+
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 4443334322 33357899999999998888877553322 12234556778899998663 44444
No 39
>PLN03025 replication factor C subunit; Provisional
Probab=98.50 E-value=1.6e-06 Score=86.10 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=104.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|.++-+..+..++.. +..+.+.++|++|+||||+|..+++.. ....|. .++-++.++.... ...++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~-----~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD-----GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHH
Confidence 4678887777777766542 234457799999999999999988731 122232 1112222222111 1222222
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCcce
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGSTNI 291 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~~~ 291 (515)
..+...... .-.++.-++|||+++..+....+.+...+......+++|+++... .+... ......
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 221110000 002456699999998776555555666665444556777766432 22211 122457
Q ss_pred eeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 292 IFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 292 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
+++.+++.++....+...+...+- .-..+....|++.++|..-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 899999999999888877643321 11245578889999886543
No 40
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=4.8e-06 Score=76.07 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=64.8
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCC
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSF 316 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 316 (515)
+.+-++|+||++..+....+.+...+....+.+.+|++|++. .+... ......+.+.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 556789999997776666777888887655566677776643 22222 1235689999999999988887761
Q ss_pred CCccchHHHHHHHHHHcCCCChh
Q 040597 317 EDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 317 ~~~~~~~~~~~~I~~~c~glPLa 339 (515)
. ..+.+..|++.++|.|..
T Consensus 169 i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred C----CHHHHHHHHHHcCCCccc
Confidence 1 135688999999998853
No 41
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=2.8e-07 Score=87.36 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc--ccHHHHHHHHHHHhcCCCCCccc------HHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVAKAIIEGLGESASSLSE------FQSLMS 231 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~------~~~l~~ 231 (515)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+.+. +++.++++.+...+-....+... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999964433 8999999997776 78899999984333221111111 112222
Q ss_pred HHHHH-hcCCcEEEEecccC
Q 040597 232 HIHRS-IEGKKFFLLLDDVW 250 (515)
Q Consensus 232 ~l~~~-L~~kr~LlVLDdvw 250 (515)
..... -.+++.+|++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 42
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.47 E-value=1e-06 Score=95.73 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=95.8
Q ss_pred CccccccchHH---HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 135 GEVFSGVDEKN---ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 135 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.+++|.+..+. .+.+.+. ......+.|+|++|+||||||+.+++. ....|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~-----~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i------ 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK-----ADRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV------ 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh-----cCCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh------
Confidence 46888877664 3444443 234556789999999999999999973 333331 111110 000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHh--cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE--EcccHH--HHh-
Q 040597 212 IIEGLGESASSLSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV--TTRNES--VAR- 284 (515)
Q Consensus 212 il~~l~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~- 284 (515)
.+...........+ .+++.+|||||++..+...++.+...+. .|+.+++ ||.+.. +..
T Consensus 91 ------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 91 ------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 01111222222222 2467899999997766555555554443 3555555 344432 111
Q ss_pred hhCCcceeeccCCChhhhHHHHHHhhcCCCC---CCCccchHHHHHHHHHHcCCCC
Q 040597 285 MMGSTNIIFIEQLTEEECWSLFKRLAFFDRS---FEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 285 ~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~---~~~~~~~~~~~~~I~~~c~glP 337 (515)
.......+.+++|+.++...++.+.+..... .....-..+....|++.+.|..
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1223467999999999999999876631000 0111122455677788887753
No 43
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.1e-06 Score=84.83 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHHhccCCC-----CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSE-----QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 209 (515)
.+++|-+.-++.+.+.+..+... ..-...+.++|+.|+|||++|..+.+.......- + .++..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 35788888888888888643210 0135678899999999999998886521111000 0 000000000
Q ss_pred HHHHHHhcCC------CCCcccHHH---HHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc
Q 040597 210 KAIIEGLGES------ASSLSEFQS---LMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 210 ~~il~~l~~~------~~~~~~~~~---l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 279 (515)
+.+...-... .......++ +.+.+... ..+++-++|+|+++..+....+.+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 1111000000 000111222 22222111 1345568889999887766667777777655556666666655
Q ss_pred H-HHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 280 E-SVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 280 ~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
. .+... ......+.+.+++.++..+.+.+... . ..+.+..++..++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 33322 23357899999999999888874321 1 1344678899999999755443
No 44
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=3.5e-06 Score=79.50 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhc
Q 040597 138 FSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLG 217 (515)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 217 (515)
.|........+..+... ......+.|+|..|+|||+||+.+++.. ..... ...+++...... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~---~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~~~------~----~- 85 (227)
T PRK08903 22 AGENAELVARLRELAAG---PVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASPLL------A----F- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhc---cCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHhHH------H----H-
Confidence 35544444444444322 2334678899999999999999998742 12222 344554433110 0 0
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC-CCCc-EEEEEcccHHHHh--------hhC
Q 040597 218 ESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-LHGS-KILVTTRNESVAR--------MMG 287 (515)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-~~gs-~IivTTR~~~v~~--------~~~ 287 (515)
.. ....-+||+||+...+...-..+...+... ..+. .+|+|++...... .+.
T Consensus 86 -----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 01 123347889999654433333344444321 2333 3666666432111 222
Q ss_pred CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhc
Q 040597 288 STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILL 347 (515)
Q Consensus 288 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 347 (515)
....+.+.++++++-..++.+.+-..+ ..--++....+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 246889999999887777765432211 12234567788889999998887766555
No 45
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=2.7e-06 Score=90.57 Aligned_cols=192 Identities=16% Similarity=0.193 Sum_probs=113.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|-+.-+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......+. ..++..-...+.|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 46899888888888887643 2345678999999999999998887422211110 001111112222211
Q ss_pred H-------hcCC-CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 G-------LGES-ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~-------l~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
. +... .....++.++.+.+... ..+++-++|+|+++..+....+.|...+.......++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0 0000 00111222233322221 2466779999999888877788888877765556666655554 44432
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
. ......|.+.+++.++....+.+.+...+ .....+....|++.++|.+--+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 23357899999999999998887653221 11224556788999999776443
No 46
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.6e-06 Score=88.66 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=110.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|-+.-+..|.+++..+ .-...+.++|+.|+||||+|+.+.+........ .+... .++..-...+.|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 46889777777788877643 345677899999999999999886531111100 00000 011111111122
Q ss_pred HHHhc-----CCCCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHH
Q 040597 213 IEGLG-----ESASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESV 282 (515)
Q Consensus 213 l~~l~-----~~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v 282 (515)
...-. .........+++.+.+... ..++.-++|||+++..+...++.+...+........+|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 11000 0000011222222222111 13445589999998888777888887777655566666555 43333
Q ss_pred Hh-hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 283 AR-MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 283 ~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
.. .......+.+.+++.++....+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 32 2333678999999999999888877643221 1124556788889988764443
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=6.7e-06 Score=83.18 Aligned_cols=182 Identities=13% Similarity=0.153 Sum_probs=109.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh--c------------------cccee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK--R------------------NFEKV 194 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~------------------~F~~~ 194 (515)
.+++|.+..++.+.+++..+ .-...+.++|++|+||||+|+.+.+..... . +++ .
T Consensus 14 ~~iig~~~~~~~l~~~~~~~----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-V 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 46899999999999888643 335678899999999999998887631111 0 111 1
Q ss_pred eEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEE
Q 040597 195 IWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKI 273 (515)
Q Consensus 195 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~I 273 (515)
.+++...... ..+...+.+.+... ..+++-++|+|++...+....+.+...+......+.+
T Consensus 89 ~~~~~~~~~~------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAASNNG------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeeccccCC------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 1221111000 01122222222211 1345568899999665555566677777655556666
Q ss_pred EEEcccHH-HHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 274 LVTTRNES-VARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 274 ivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
|++|.+.. +... ......+++.+++.++....+...+-..+. .-..+.+..|++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHH
Confidence 66665433 2222 223467889999999998888877643221 112466788899999988665443
No 48
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6.3e-06 Score=82.35 Aligned_cols=196 Identities=15% Similarity=0.132 Sum_probs=115.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc--ccceeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
..++|-++....+...+..+ .....+.|+|+.|+||||+|..+.+...... .+... ....++......+.|
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 56899999888888888643 3456799999999999999988876321110 01111 001111111222333
Q ss_pred HHH-------hcCC--C-----CCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCCCcEE
Q 040597 213 IEG-------LGES--A-----SSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKI 273 (515)
Q Consensus 213 l~~-------l~~~--~-----~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~I 273 (515)
... +..+ . .....++++ ..+.+.+ .+++-++|+|+++..+....+.+...+........+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 222 1100 0 011123332 2333333 356679999999888877777777777654445554
Q ss_pred EEEc-ccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 274 LVTT-RNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 274 ivTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
|++| +...+... .+....+.+.+++.++...++.+.... .. -..+....|++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 43333322 223568999999999999999874311 11 123456789999999998665443
No 49
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.7e-06 Score=88.14 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=109.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-------------------cceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~ 195 (515)
.+++|-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+.+....... |.-++
T Consensus 16 ~divGq~~v~~~L~~~~~~~----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 46899999999999988643 33456789999999999999988763221111 11122
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
.++.+....+. ++.++.+.+.-. ..++.-++|+|+++..+....+.+...+......+++|
T Consensus 92 eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 92 EVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22221111111 111222211111 13566689999998877777777877777655667666
Q ss_pred EEccc-HHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 275 VTTRN-ESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 275 vTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
++|.+ ..+... ......+++.+++.++....+.+.+-..+. .-..+....|++.++|.+--+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHH
Confidence 65543 333322 223467889999999887776666533221 112345677888898877544
No 50
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1e-05 Score=81.21 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=114.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceee------EEEeCCcccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI------WVCVSDTFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------wv~~~~~~~~~~~ 208 (515)
.+++|-+.-...+.+.+..+ .-...+.++|+.|+||+|+|..+.+............ =+.+.... ..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 47899888888888888643 3456789999999999999987766321111110000 00000000 11
Q ss_pred HHHHHHHhcCC-------C-C------CcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCC
Q 040597 209 AKAIIEGLGES-------A-S------SLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLH 269 (515)
Q Consensus 209 ~~~il~~l~~~-------~-~------~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 269 (515)
.+.|...-... . . ..-.++++ ..+.+.+ .+.+-++|+|+++..+....+.|...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111111000 0 0 11123332 2233333 35667999999988887778888887776555
Q ss_pred CcEEEEEcccHH-HHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 270 GSKILVTTRNES-VARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 270 gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
++.+|++|.+.. +... ......+.+.+++.++..+++.+.... . + .+....++..++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~-~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L-P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C-C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 666777776543 3322 233678999999999999999875411 1 1 1222678999999998665543
No 51
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=6.5e-06 Score=77.83 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=88.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.|+|..|+|||.|++.+++. .......+.|+++.+ ....+. ...+. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~--------------~~~~~----l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR--------------DALEA----L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH--------------HHHHH----H-hcC
Confidence 45999999999999999999873 333333556666432 111100 11111 1 233
Q ss_pred EEEEecccCCCC-cccccc-hhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHHHHh
Q 040597 242 FFLLLDDVWDGD-YNKWEP-FFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 242 ~LlVLDdvw~~~-~~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
-+|||||+.... ...|.. +...+.. ..+|..||+||+.. .+...+.....+++++++.++-..++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995432 122332 3333322 12356699999852 22223333568999999999999999987
Q ss_pred hcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 310 AFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
+...+ ..--.+...-|++.++|-.-.+
T Consensus 175 a~~~~----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC----CCCCHHHHHHHHHhCCCCHHHH
Confidence 65322 1222455677888887655444
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.4e-06 Score=86.01 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=105.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc--c-----------------ceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--F-----------------EKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F-----------------~~~~ 195 (515)
.+++|.+.-...+...+..+ .-...+.++|++|+||||+|+.+.+....... + ..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 46889877766666666532 23456889999999999999988763211110 0 0111
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
.++.+..... .++..+.+..... ..+++-++|+|+++..+....+.+...+........+|
T Consensus 90 el~aa~~~gi------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 90 ELDAASNRGI------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEeCcccCCH------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 1221111111 1111122221111 23566799999997655555566666665543344444
Q ss_pred EEccc-HHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-CChhhHhhhhh
Q 040597 275 VTTRN-ESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKG-LPLAAKVIGIL 346 (515)
Q Consensus 275 vTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~~ 346 (515)
++|.+ ..+... ......+.+.+++.++....+.+.+...+- .-..+....|++.++| ++.|+..+-.+
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44433 334332 233568899999999998888887643221 1224556778887765 46666666543
No 53
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.1e-06 Score=86.61 Aligned_cols=198 Identities=14% Similarity=0.140 Sum_probs=110.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE-eCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~il 213 (515)
.+++|.+.-++.|.+++..+ .-...+.++|+.|+||||+|..+.+.......++...|.. ...++..-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhC----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 46889888778777777532 2345688999999999999998876322211111111110 011111111111111
Q ss_pred HHhcCC-----CCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHHH
Q 040597 214 EGLGES-----ASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESVA 283 (515)
Q Consensus 214 ~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~ 283 (515)
...... .......+++.+..... ..+++-++|+|+++..+...++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 110000 00111123332222111 13456688999998776667888888877655566666554 444443
Q ss_pred hhh-CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 284 RMM-GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 284 ~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
..+ .....+++.+++.++....+...+...+. .-..+.+..|++.++|.+--+
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 322 22457889999999988888776632211 122456788999999977533
No 54
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.3e-06 Score=89.72 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+..+..|.+++..+ .-...+.++|+.|+||||+|+.+.+......... +..+ ..-...+.|..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pC----g~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPC----GVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCC----cccHHHHHHhc
Confidence 47899999999999988743 3356789999999999999998876321111100 0000 00000000000
Q ss_pred H-----hcCCCCCcccHHHHHHHHHH---H-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHh
Q 040597 215 G-----LGESASSLSEFQSLMSHIHR---S-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVAR 284 (515)
Q Consensus 215 ~-----l~~~~~~~~~~~~l~~~l~~---~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~ 284 (515)
. +..........+.+.+.+.. . ..+++-++|+|+++..+....+.|...+......+.+|++|.+. .+..
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 00000011112222222211 1 13566789999997766555666777776544556677666543 2221
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
. .+....|.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHH
Confidence 1 223456788899999999988877643321 1224567889999998875443
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.6e-06 Score=87.16 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=111.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-+..|..++..+ .-...+.++|+.|+||||+|+.+++..... +.... ..+....+ ...+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~~--~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIGN--EPCNECTS----CLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccCc--cccCCCcH----HHHHHc
Confidence 46889888888888887643 223568999999999999999998732111 11000 00000001 111111
Q ss_pred HhcCC--------CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHHHh
Q 040597 215 GLGES--------ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESVAR 284 (515)
Q Consensus 215 ~l~~~--------~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~ 284 (515)
..... .....++.++.+.+... ..++.-++|+|+++..+...++.+...+........+|+ ||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 11100 00112223333333221 245667999999988877778888777765444555554 444444432
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
. ......|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+--
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHH
Confidence 2 233567999999999988888877643221 12345678899999998743
No 56
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.1e-05 Score=83.43 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=110.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-------------------ccceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 195 (515)
.+++|-+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.+.+...... .+.-++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 46899888888777777532 2345889999999999999988875211100 111122
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
.++.++..... ++.++.+..... ..++.-++|+|+++..+....+.|...+....+.+.+|
T Consensus 89 eidaas~~~vd------------------dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 89 EIDAASNTSVD------------------DIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEecccCCCHH------------------HHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 33322221111 122222222111 13456689999998777667777888887666666666
Q ss_pred EEcc-cHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 275 VTTR-NESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 275 vTTR-~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
++|. ...+... ......+.+.+++.++....+.+.+...+. .-..+....|++.++|.+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 6553 3444432 233578999999999999988887753321 12245567788999887753
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=7.4e-06 Score=86.07 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=107.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+..++++.+|+..-.. +...+.+.|+|++|+||||+|+.+++. . .|+ .+-++.++..+. ..+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~-g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK-GKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEcccccccH-HHHHHHHH
Confidence 4689999999999998864321 233678999999999999999999884 2 232 223344432222 22223322
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc----ccccchhhhcccCCCCcEEEEEcccHH-HHh--hhC
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY----NKWEPFFFCVKNGLHGSKILVTTRNES-VAR--MMG 287 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~----~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~--~~~ 287 (515)
....... ....++-+||||+++.... ..+..+...+... +..||+|+.+.. ... .-.
T Consensus 87 ~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhc
Confidence 2211100 0113677999999976432 2244455555432 334666664321 111 112
Q ss_pred CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 288 STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 288 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
....+.+.+++.++....+.+.+...+. . -..++...|++.++|..-.+.
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi-~---i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGI-E---CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 3467899999999998888877643322 1 124567888888888665553
No 58
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.35 E-value=1.2e-06 Score=86.76 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=64.8
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc--cHHHHHHHHHHHhcCCCCCc
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGESASSL 223 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~ 223 (515)
++++.+..- ..-....|+|++|+||||||+.+|++.... +|+.++||.+.+.. .+.++++.|...+-....+.
T Consensus 158 rvID~l~PI----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPI----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeeccc----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 455555432 233567899999999999999999964433 89999999999887 77777777763322221111
Q ss_pred ccH------HHHHHHHHHH-hcCCcEEEEecccC
Q 040597 224 SEF------QSLMSHIHRS-IEGKKFFLLLDDVW 250 (515)
Q Consensus 224 ~~~------~~l~~~l~~~-L~~kr~LlVLDdvw 250 (515)
... ....+.-... -.++..+|++|++.
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111 1111111121 26799999999993
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=1.1e-05 Score=76.51 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=90.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
.+.+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...++.+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-
Confidence 357899999999999999998873 333333455665533100 0011111121 1
Q ss_pred cEEEEecccCCCC-cccccc-hhhhccc-CCCC-cEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHHH
Q 040597 241 KFFLLLDDVWDGD-YNKWEP-FFFCVKN-GLHG-SKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 241 r~LlVLDdvw~~~-~~~~~~-l~~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
--+|++||+.... ...|+. +...+.. ...| .++|+||+.. .+...+....++.+.++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999995532 123443 3333332 1123 3689998754 233334556799999999999999988
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 308 RLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
+++...+ ..--+++..-|++.+.|..-++..+
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 7664321 1223566777888888766555443
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.3e-06 Score=87.57 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=106.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-------------------cceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-------------------FEKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~ 195 (515)
.+++|-+.-++.+.+++..+ .-...+.++|+.|+||||+|+.+.+....... |.-.+
T Consensus 16 ~divGq~~v~~~L~~~i~~~----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 46889988888888888643 23456789999999999999988763211110 11111
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
++..+.... ..++.++....... ..+++-++|+|+++..+....+.+...+......+.+|
T Consensus 92 ei~~~~~~~------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 92 EVDAASNTQ------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred EeeccccCC------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 221111111 11111122111111 13566799999998777666777777776655566666
Q ss_pred EEccc-HHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 275 VTTRN-ESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 275 vTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
++|.+ +.+... ......+++.+++.++....+.+.+...+. ....+....|++.++|.+-
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 65544 333211 222467899999999988888776532221 1224456778999999775
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.2e-05 Score=84.65 Aligned_cols=195 Identities=16% Similarity=0.168 Sum_probs=111.5
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-++.+.+.+..+ ...+.+.++|+.|+||||+|+.+.+...... |... .++..-...+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 47899999998888888643 3346788999999999999998876321111 2110 01111111122211
Q ss_pred HhcCC-----C---CCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHHHh
Q 040597 215 GLGES-----A---SSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESVAR 284 (515)
Q Consensus 215 ~l~~~-----~---~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~ 284 (515)
..... . ....++..+...+... ..+++-++|+|+++..+...++.|...+......+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 11000 0 0011122222222211 12344479999998776667777877776554455555544 4444432
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh-hhHhhh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL-AAKVIG 344 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 344 (515)
. ......+++.+++.++....+...+...+. .-..+.+..|++.++|.+- |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 333568999999999998888876643221 1124457788999999654 444443
No 62
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.28 E-value=2.9e-05 Score=74.41 Aligned_cols=196 Identities=18% Similarity=0.171 Sum_probs=116.1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCC
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGES 219 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 219 (515)
++++.+.|.... ....+.+.|+|.+|.|||++++++...--... .--.++.|.+....+...++..|+.+++.+
T Consensus 46 L~~L~~Ll~~P~--~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 46 LDRLEELLEYPK--RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHhCCc--ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 344444444332 45567899999999999999999986311110 011467788888999999999999999988
Q ss_pred CCCcccHHHHHHHHHHHhcC-CcEEEEecccCCC---Ccccccchhh---hcccCCCCcEEEEEcccHHHHhh-----hC
Q 040597 220 ASSLSEFQSLMSHIHRSIEG-KKFFLLLDDVWDG---DYNKWEPFFF---CVKNGLHGSKILVTTRNESVARM-----MG 287 (515)
Q Consensus 220 ~~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~---~~~~~~~l~~---~l~~~~~gs~IivTTR~~~v~~~-----~~ 287 (515)
.........+.......++. +-=+||+|.+++. +...-..+.. .+.+...=+-|.+-|++..-+-. .+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 76655655555555555543 3447899999662 1111122222 23333334556777765432211 11
Q ss_pred CcceeeccCCChhh-hHHHHHHhh--cCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 288 STNIIFIEQLTEEE-CWSLFKRLA--FFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 288 ~~~~~~l~~L~~~~-a~~Lf~~~~--~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
...++.++....++ ...|+.... ..-.. ...-...+++..|...++|+.--+..
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 24566777666543 444443221 11111 12234567899999999998755443
No 63
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=3.6e-05 Score=76.81 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=129.8
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.+..++||+.|+..+.+++...-+ ......+-|.|-+|.|||.+...++.+......=..++++++..-.....++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle-~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE-LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh-cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 356799999999999999876543 4567889999999999999999999863322222356788777666778888888
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCC--cEEEEecccCCCCcccccchhhhccc-CCCCcEEEEEcccH-------HH
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGK--KFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILVTTRNE-------SV 282 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~~-------~v 282 (515)
...+...........+.+..+..+.... -+|+|||.++.-....-..+...|.+ ..+++++|+.---. -+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 8877222111111144556666666433 68999999855322222333334432 23455555432211 11
Q ss_pred Hhh----hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcc
Q 040597 283 ARM----MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLH 348 (515)
Q Consensus 283 ~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~ 348 (515)
... ......+...|-+.++..++|..+.-.... .......++-++++|.|.-=-+..+-.+.+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111 123567888999999999999998743322 122223445556666555444444444444
No 64
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.2e-05 Score=88.47 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=110.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+.+.......... ..+..-...+.|..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 46899888888888888643 23456889999999999999988764222111100 00000001111110
Q ss_pred H---------hcC-CCCCcccHHHHHHHHHH-HhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHH
Q 040597 215 G---------LGE-SASSLSEFQSLMSHIHR-SIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESV 282 (515)
Q Consensus 215 ~---------l~~-~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v 282 (515)
. +.. ......++.++.+.+.. -..++.-++|||+++..+...++.|...+..-...+.+|++| ....+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0 000 00011122222222111 124556688999998888778888888887766666666555 44444
Q ss_pred Hhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 283 ARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 283 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
... ......|++..++.++...++.+.+-..+. .-..+....|++.++|.+..
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 433 233678999999999988888776532221 11234567789999997743
No 65
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.6e-05 Score=84.77 Aligned_cols=196 Identities=13% Similarity=0.114 Sum_probs=113.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc--eeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+.+......... ...+- .+..-...+.|
T Consensus 24 ~dliGq~~~v~~L~~~~~~g----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 47899999999999888643 3355788999999999999998887422111110 00000 00000111122
Q ss_pred HHHhcCC--------CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHH
Q 040597 213 IEGLGES--------ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESV 282 (515)
Q Consensus 213 l~~l~~~--------~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v 282 (515)
...-... .....++.++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 2111110 00111222333322211 13455689999997777666777877777655566666554 44443
Q ss_pred Hhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 283 ARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 283 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
... ......+.+..++.++....+.+.+...+. .-..+....|++.++|.+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 332 223568999999999999988887643221 11235577889999998765533
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.25 E-value=1.8e-05 Score=88.17 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=95.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc------cceeeE-EEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~w-v~~~~~~~~~~ 207 (515)
..++||+.++.++++.|... ....+.++|++|+||||+|+.+.+. +... .+..+| ++++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-----~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~------ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-----RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL------ 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-----CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh------
Confidence 46899999999999998754 3345679999999999999998873 3221 112222 22221
Q ss_pred HHHHHHHHhcCCCCCcccH-HHHHHHHHHHh-cCCcEEEEecccCCCCc-----cccc---chhhhcccCCCCcEEEEEc
Q 040597 208 VAKAIIEGLGESASSLSEF-QSLMSHIHRSI-EGKKFFLLLDDVWDGDY-----NKWE---PFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~-~~l~~~l~~~L-~~kr~LlVLDdvw~~~~-----~~~~---~l~~~l~~~~~gs~IivTT 277 (515)
+........+. ..+...+.+.- .+++.+|++|+++.-.. ..-+ .+.+.+..+ .-++|-||
T Consensus 254 --------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaT 323 (852)
T TIGR03345 254 --------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAAT 323 (852)
T ss_pred --------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEec
Confidence 00000001111 11222222221 24689999999865321 1111 233333322 34566666
Q ss_pred ccHHHHhh-------hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 278 RNESVARM-------MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 278 R~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
..++.... ......+.+++++.++...++....-.-.......-..+....+++.+.+.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 55432211 123568999999999999997544321111011111234455566666543
No 67
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=7e-07 Score=87.81 Aligned_cols=216 Identities=21% Similarity=0.215 Sum_probs=134.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
...+.+.++|.|||||||++-.+.. +...|. .+.++....-.+...+.-.+...++....+. +.....+...+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHH
Confidence 3568999999999999999988886 566775 4555555554455544444444465543221 12234455566
Q ss_pred cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhhhCCcceeeccCCChh-hhHHHHHHhhcCCCC-
Q 040597 238 EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMGSTNIIFIEQLTEE-ECWSLFKRLAFFDRS- 315 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~~- 315 (515)
.+++.++|+||...-- ..-..+...+..+...-.|+.|+|..... .......+++|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999982211 01112233333444455688899865332 33456677777765 788898877654332
Q ss_pred CCCccchHHHHHHHHHHcCCCChhhHhhhhhcchhhHHhhhhhh---hhhcc-------cccccccccccccccCCCCC
Q 040597 316 FEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSKEWQRILDSE---MWKVK-------EVGQGLLTPLLLSYNDLSSN 384 (515)
Q Consensus 316 ~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~w~~~l~~~---~~~~~-------~~~~~~~~~l~lsy~~Lp~~ 384 (515)
............+|.++..|.|++|..+++..++-....+...+ ...+. .........+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 22334556778999999999999999999887765222222221 11111 12344677788898888765
No 68
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=1.7e-05 Score=74.50 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=85.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
.+.+.|+|+.|+|||+|++.+++.. ...+++.. .+..+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~---------------------~~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN---------------------AAAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH---------------------hhhc-
Confidence 4678999999999999999887631 12233321 11111111 1111
Q ss_pred cEEEEecccCCCCcccccchhhhccc-CCCCcEEEEEccc---------HHHHhhhCCcceeeccCCChhhhHHHHHHhh
Q 040597 241 KFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILVTTRN---------ESVARMMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
-+|++||+..... .-..+...+.. ...|..+|+|++. +.+...+....++++++++.++-..++.+.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899954321 11223333332 2236678888873 2333344556799999999999999999887
Q ss_pred cCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 311 FFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
.... ..--+++..-|++.+.|..-++..+
T Consensus 167 ~~~~----~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 167 ADRQ----LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHcC----CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 4321 1122466777888888777666543
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=1.8e-05 Score=80.22 Aligned_cols=178 Identities=14% Similarity=0.079 Sum_probs=98.3
Q ss_pred cCccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 205 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 205 (515)
..++.|.++.++++.+.+...-. +-..++-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 34788999999999887642110 0123566999999999999999999883 33333 22221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCC-----------cccccchhhhc---cc--CC
Q 040597 206 IRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGD-----------YNKWEPFFFCV---KN--GL 268 (515)
Q Consensus 206 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~-----------~~~~~~l~~~l---~~--~~ 268 (515)
..+ ...... ........+.+. -...+.+|+||+++... ......+...+ .. ..
T Consensus 190 ~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111 111000 011112222222 23467899999986421 01111222222 21 12
Q ss_pred CCcEEEEEcccHHHHh-hh----CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 269 HGSKILVTTRNESVAR-MM----GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 269 ~gs~IivTTR~~~v~~-~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
.+..||.||....... .+ .-...+.+...+.++..++|..++..... ..... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 3567888887543221 11 11457889999999999999887643321 11112 456778887764
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=3.2e-05 Score=80.08 Aligned_cols=168 Identities=20% Similarity=0.181 Sum_probs=102.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
..-+.|+|..|+|||+|++.+.+. +.... ..+++++ ...+...+...+.... + ....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~-~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH------K-EIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------h-HHHHHHHHhc
Confidence 356889999999999999999883 33222 2334443 3456666666654311 1 1223333333
Q ss_pred CCcEEEEecccCCCCc-cc-ccchhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHH
Q 040597 239 GKKFFLLLDDVWDGDY-NK-WEPFFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~-~~-~~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
..-+||+||+..... .. .+.+...+.. ...|..||+|+... .+...+....++.+.+++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344888999965331 12 2334444442 23355688886532 22233444668889999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGIL 346 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 346 (515)
.+++-..+- ...-.+++..-|++.++|.|-.+.-+...
T Consensus 285 ~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 988753221 01233567888999999999877665533
No 71
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=2.1e-05 Score=74.38 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=91.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 367899999999999999998873 333224466776432 1110 011 22222222
Q ss_pred cEEEEecccCCCC-cccccc-hhhhccc-CCCCcEEEEEcccHH---------HHhhhCCcceeeccCCChhhhHHHHHH
Q 040597 241 KFFLLLDDVWDGD-YNKWEP-FFFCVKN-GLHGSKILVTTRNES---------VARMMGSTNIIFIEQLTEEECWSLFKR 308 (515)
Q Consensus 241 r~LlVLDdvw~~~-~~~~~~-l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~ 308 (515)
. +||+||+.... ...|.. +...+.. ..+|..+|+|++... +...+....++++++++.++-..++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67899995432 234443 5554442 234667888887432 112223356889999999999999986
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 309 LAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
++...+ . .--+++..-|++.+.|..-.+..+-
T Consensus 178 ka~~~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 178 RASRRG-L---HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 664321 1 1124667778888888765554443
No 72
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.3e-05 Score=84.16 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=112.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+.+......... ....+......+.|..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 47899888888888877643 2345678999999999999998886321111000 0011111222333322
Q ss_pred HhcCC-----CCCcccHH---HHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 GLGES-----ASSLSEFQ---SLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~l~~~-----~~~~~~~~---~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
..... .......+ ++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 21110 00111222 222222211 1345678999999776666677777777665556666665543 33332
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
. ......+.+..++.++....+.+.+...+. .-..+.+..|++.++|.+..+..
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 223467889999999988888877643221 11235677899999998865543
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.2e-05 Score=81.14 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+.+........+ + .++..-...+.|..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhc
Confidence 47899888888888888642 3355678999999999999998886322111110 0 00111111111111
Q ss_pred H---------hcC-CCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHH
Q 040597 215 G---------LGE-SASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESV 282 (515)
Q Consensus 215 ~---------l~~-~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v 282 (515)
. +.. ......++.++.+.+... ..+++-++|+|+++..+....+.|...+........+|+ ||....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 000 000112222333333221 135566899999988877777888888876555665555 4444444
Q ss_pred Hhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 283 ARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 283 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
... ......+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+-
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 432 333578999999999988888776543221 1123455677888888663
No 74
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.7e-05 Score=78.07 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=102.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh------cccceeeEEEeCCcccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK------RNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~~~wv~~~~~~~~~~~ 208 (515)
.+++|.+...+.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+..... ..|+..+ +.+... +
T Consensus 17 ~~iig~~~~~~~l~~~i~~~----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~-~---- 86 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA-S---- 86 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-c----
Confidence 46789998888888888642 335688899999999999999887631110 1111111 111100 0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc-ccHHHHhh-
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHR-SIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT-RNESVARM- 285 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~- 285 (515)
.....++..+.+.+.. -..+++-++|+|++.......++.+...+......+.+|++| ....+...
T Consensus 87 -----------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 87 -----------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -----------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 0000111111211111 013455689999996655455666666665444445555554 33333222
Q ss_pred hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 286 MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 286 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
......+++.++++++....+...+...+- .-..+.+..|+..++|.+-.
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHH
Confidence 223457899999999998888877643221 11245677888888886543
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=82.49 Aligned_cols=198 Identities=13% Similarity=0.149 Sum_probs=111.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+........+. .++..-...+.|..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 46788777777777766532 23567889999999999999988874221111000 01111111111211
Q ss_pred HhcCC--------CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 GLGES--------ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~l~~~--------~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
..... .....++..+.+.+... ..+++-+||+|+++..+....+.|...+........+|++|.+ ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 10000 00011122222222211 2456679999999877766677777777654345556555544 44432
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC-hhhHhhhhhc
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP-LAAKVIGILL 347 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~~~L 347 (515)
. ......+++.+++.++....+...+...+. .-..+.+..|++.++|.+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 223467899999999999888876643221 122456778899999854 5666665443
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.3e-05 Score=81.66 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE-eCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC-VSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~il 213 (515)
.+++|-+.-+..+.+.+..+ .-...+.++|+.|+||||+|+.+.+.......++...|.. +..++..-...+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 46889888888888877532 3345688999999999999988876322211111011111 001111111111111
Q ss_pred HHhcCC-----CCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHHH
Q 040597 214 EGLGES-----ASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESVA 283 (515)
Q Consensus 214 ~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~ 283 (515)
..-..+ .......+++...+... ..+.+-++|+|+++..+....+.|...+......+.+|+ |++...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 100000 00111233333222222 234556889999977766667778887776555555554 44444444
Q ss_pred hh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 284 RM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 284 ~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
.. ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|..-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHH
Confidence 32 334678999999999988888776532221 1124557788999998554
No 77
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=6.1e-05 Score=70.40 Aligned_cols=181 Identities=13% Similarity=0.188 Sum_probs=99.9
Q ss_pred ccccc-chHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHHH
Q 040597 137 VFSGV-DEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 137 ~vGr~-~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il 213 (515)
++|.. ...-.....+.... +.....+.|+|..|+|||.|.+.+++. ..... ..+++++ ..++...+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~--~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP--GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST--TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC--CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHH
Confidence 34542 33344445555442 234455789999999999999999984 43322 2344553 345555555
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc-cccc-hhhhccc-CCCCcEEEEEcccH---------H
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN-KWEP-FFFCVKN-GLHGSKILVTTRNE---------S 281 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~-~~~~-l~~~l~~-~~~gs~IivTTR~~---------~ 281 (515)
..+... .. ..+.+.+. .-=+|+|||++.-... .|.. +...+.. ...|.+||+|+... .
T Consensus 81 ~~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 81 DALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 555431 12 22333334 3347889999654322 2332 3333332 13466899999643 2
Q ss_pred HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 282 VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 282 v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
+...+....++++.+++.++-..++.+.+...+- .--++++.-|++.+.+..-.|.
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHH
Confidence 3333445678999999999999999988854321 1234566677777766554443
No 78
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.14 E-value=5e-06 Score=82.85 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc--ccHHHHHHHHHHHhcCCCCCccc------HHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT--FEEIRVAKAIIEGLGESASSLSE------FQSLMS 231 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~------~~~l~~ 231 (515)
.-..++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.++..+-....+... ...+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 345789999999999999999998532 337999999999865 78889999885544322211111 112222
Q ss_pred HHHHH-hcCCcEEEEecccC
Q 040597 232 HIHRS-IEGKKFFLLLDDVW 250 (515)
Q Consensus 232 ~l~~~-L~~kr~LlVLDdvw 250 (515)
..... -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 26899999999994
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.13 E-value=2.7e-05 Score=77.35 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+...+.+..++..+ ....++.++|++|+|||++|+.+++. ... ....++.+. .. ....+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-IDFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HHHHHHHHH
Confidence 57899999999888888632 34567888999999999999999873 221 123344443 11 111111111
Q ss_pred HhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCC-CcccccchhhhcccCCCCcEEEEEcccHH-HHhh-hCCcc
Q 040597 215 GLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDG-DYNKWEPFFFCVKNGLHGSKILVTTRNES-VARM-MGSTN 290 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~ 290 (515)
.+. ... +.+.+-+||+|++... .......+...+.....++.+|+||.... +... .....
T Consensus 90 ~~~----------------~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RFA----------------STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHH----------------HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 110 000 1234568899999655 22233345555555556778888886532 1111 12234
Q ss_pred eeeccCCChhhhHHHHHH
Q 040597 291 IIFIEQLTEEECWSLFKR 308 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~ 308 (515)
.+.+...+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 566767777776655543
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=8.2e-05 Score=77.70 Aligned_cols=181 Identities=16% Similarity=0.182 Sum_probs=106.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-------------------ccceee
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVI 195 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 195 (515)
.+++|-+.-...+.+++..+ .-...+.++|+.|+||||+|+.+........ .|....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HHccChHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 46789888888888888643 2345678899999999999998876311100 011111
Q ss_pred EEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE
Q 040597 196 WVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL 274 (515)
Q Consensus 196 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 274 (515)
++..+.. ....+...+.+.+... ..+++-++|+|+++..+....+.+...+....+...+|
T Consensus 92 eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111110 0111122232222221 13566799999997766556667777776554455555
Q ss_pred EEc-ccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 275 VTT-RNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 275 vTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
++| +...+... ......+.+.+++.++....+.+.+-..+- .-..+.+..|++.++|.+-.+.
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 544 43333322 223467899999999988888876643221 1223556778888988765443
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.11 E-value=1.6e-05 Score=75.10 Aligned_cols=182 Identities=16% Similarity=0.116 Sum_probs=112.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceee-EEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~il 213 (515)
.+++|.+..+.-+.+.+.. ...+....+|++|.|||+-|..+.....-.+.|++.+ =.|+|..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~-- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE-- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh--
Confidence 4688888888888888874 3567889999999999999988887433345565443 34454432221 0000
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHh--cCCc-EEEEecccCCCCcccccchhhhcccCCCCcEEE-EEcccHHHHhhh-CC
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSI--EGKK-FFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL-VTTRNESVARMM-GS 288 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~-~~ 288 (515)
...+...+........ .-++ -.+|||+++....+.|..+...+......+++| ||+--..+...+ ..
T Consensus 108 --------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 108 --------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred --------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 0111111111111000 1123 478999999998899999999888766566654 455444333322 22
Q ss_pred cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 289 TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 289 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
...|..++|.+++...-+...+-..+. .-..+..+.|++.++|-
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGD 223 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCc
Confidence 456888999999888888777643332 22245567788888873
No 82
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=4.1e-05 Score=84.56 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=85.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-----cc-ceeeEEEeCCcccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-----NF-EKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F-~~~~wv~~~~~~~~~~~ 208 (515)
..++||+++++++++.|... ...-+.++|++|+|||++|+.+++. +.. .+ +..+|. ++ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-----~~~n~lL~G~pG~GKT~l~~~la~~--~~~~~~p~~l~~~~~~~-~~----~~~- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-----KKNNPLLVGEPGVGKTAIAEGLALR--IAEGKVPENLKNAKIYS-LD----MGS- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCeEEE-ec----HHH-
Confidence 36899999999999988743 2345679999999999999998873 321 11 233332 11 111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCC---------cccccchhhhcccCCCCcEEEEEcc
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGD---------YNKWEPFFFCVKNGLHGSKILVTTR 278 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~---------~~~~~~l~~~l~~~~~gs~IivTTR 278 (515)
++.. .....+.+.....+.+.+ ..++.+|++|+++.-. ...-+.+...+..+ .-++|-+|.
T Consensus 249 ---l~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt 319 (731)
T TIGR02639 249 ---LLAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTT 319 (731)
T ss_pred ---Hhhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecC
Confidence 1110 000112222222222222 3468899999986321 01112233333321 234454444
Q ss_pred cHHHHhh-------hCCcceeeccCCChhhhHHHHHHhh
Q 040597 279 NESVARM-------MGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 279 ~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.++.... ......+.++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3222111 1124578999999999999998654
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=8.1e-05 Score=80.08 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=108.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.+++........+ .+ .++. .......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~----~pC~---~C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL----EPCQ---ECIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC----Cchh---HHHHhhc
Confidence 46889888888888888643 3456778999999999999998876311111000 00 0000 0000000
Q ss_pred -H---hcCCC---CCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE-EEcccHHHHhh
Q 040597 215 -G---LGESA---SSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL-VTTRNESVARM 285 (515)
Q Consensus 215 -~---l~~~~---~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~ 285 (515)
. +.... ....++.++.+.+... ..+++-++|+|+++......+..|...+........+| +|+....+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 00000 0111233333333322 23566799999998777677777777776544455544 45554444432
Q ss_pred -hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 286 -MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 286 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
......+.+.+++.++....+...+...+- .-..+.+..|++.++|.+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 333568999999999998888876532221 1123456778899988664
No 84
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00012 Score=72.67 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCC
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSF 316 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 316 (515)
+++=++|+|+++..+....+.+...+.....++.+|+||.+.. +... .+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4444567899998888888888888876556777777777653 3322 333678999999999999888765311
Q ss_pred CCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 317 EDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 317 ~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
...+.+..++..++|.|+....+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233567789999999765544
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00013 Score=76.25 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=109.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|-+.-.+.+...+..+ .-..++.++|+.|+||||+|+.+.+........+. .++..-.....+..
T Consensus 14 deiiGqe~v~~~L~~~I~~g----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~ 82 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALE 82 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhh
Confidence 46889888888888887532 34567789999999999999987763111100000 00000000000000
Q ss_pred HhcC-----CCCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHh
Q 040597 215 GLGE-----SASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVAR 284 (515)
Q Consensus 215 ~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~ 284 (515)
.... ........+++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 000001122333222211 12455689999998877777777887777655667777766553 2221
Q ss_pred -hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 285 -MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 285 -~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
.......+.+.+++.++....+.+.+...+. .-..+.+..|++.++|.+--+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHH
Confidence 1223568999999999998888876643321 122456778899999988444
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.02 E-value=0.00015 Score=74.68 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=91.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...+.|+|..|+|||+|++.+++. +.... ..+++++. ..+...+...+... ..+.. .+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 456889999999999999999984 43333 23455543 23344455544322 12222 22232
Q ss_pred CCcEEEEecccCCCCcc-cc-cchhhhcccC-CCCcEEEEEcccH-HH--------HhhhCCcceeeccCCChhhhHHHH
Q 040597 239 GKKFFLLLDDVWDGDYN-KW-EPFFFCVKNG-LHGSKILVTTRNE-SV--------ARMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~-~~-~~l~~~l~~~-~~gs~IivTTR~~-~v--------~~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
+ .-+|||||++..... .+ +.+...+... ..|..+|+||... .. ...+.....+.+.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348899999653221 11 2233333321 2345577777642 21 112223457899999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
.+.+...+. .--+++..-|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHH
Confidence 988754321 112466777888888766544
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.02 E-value=6.4e-05 Score=76.65 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=95.8
Q ss_pred CccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.++.|+++.++++.+.+...-. +-..++-|.++|++|+|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4688999999888887632110 0134567899999999999999999873 3222 333321 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCC-----------cccccchhhhcc---c--CCC
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGD-----------YNKWEPFFFCVK---N--GLH 269 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~-----------~~~~~~l~~~l~---~--~~~ 269 (515)
. +.....+ ........+.+.. ...+.+|+||+++... ......+...+. . ...
T Consensus 200 ~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 E----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred H----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1 1111110 0111222222222 3467899999995421 111112333221 1 122
Q ss_pred CcEEEEEcccHHHHhh-h----CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 270 GSKILVTTRNESVARM-M----GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 270 gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
+..||.||........ + .-...+.+++.+.++-.++|..+.....- ..... ...+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 4567777765432221 1 11457899999999999999877643221 11112 355677776644
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=8.8e-05 Score=79.34 Aligned_cols=194 Identities=12% Similarity=0.144 Sum_probs=108.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-...|.+.+..+ .-...+.++|+.|+||||+|+.+.+........+. .++..-.....|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 47899888888888887642 33567789999999999999988763211111100 00111111111111
Q ss_pred Hhc-------CC-CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHHHh
Q 040597 215 GLG-------ES-ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESVAR 284 (515)
Q Consensus 215 ~l~-------~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~ 284 (515)
.-. .. .....++.++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|+ ||....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000 00 00111222233222211 134556899999987776677778887776555666655 444444443
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC-hhhHhh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP-LAAKVI 343 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~ 343 (515)
. ......+++.+++.++....+...+...+. .-..+....|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 233567889999999888877765532221 112345667888888755 344433
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=79.05 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=108.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh---------------------cccce
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK---------------------RNFEK 193 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~ 193 (515)
.+++|.+...+.+.+++..+ .-...+.++|+.|+||||+|+.+....... .+|+.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 46899888888888888643 345678899999999999998776632110 11221
Q ss_pred eeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcE
Q 040597 194 VIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSK 272 (515)
Q Consensus 194 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 272 (515)
..++..+.... .++..+...+... ..+++=++|+|++...+...++.|...+......+.
T Consensus 93 -~~ld~~~~~~v------------------d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 93 -HELDAASNNSV------------------DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -EEecccccCCH------------------HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 11111111111 1122222211111 134555889999988776778888888876555666
Q ss_pred EEEEc-ccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 273 ILVTT-RNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 273 IivTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
+|++| ....+... ......+++.+++.++....+.+.+...+- .-..+.+..|++.++|..--
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 65544 44444433 233678999999999998888876643221 11234567788889886643
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=7.8e-05 Score=83.40 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=84.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-----cc-ceeeEEEeCCcccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-----NF-EKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F-~~~~wv~~~~~~~~~~~ 208 (515)
..++||+++++++++.|... ...-+.++|++|+|||++|+.++.. +.. .. +..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-----~~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~-l----~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-----TKNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT-L----DIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-----ccCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-e----eHHHH
Confidence 35899999999999999754 2335579999999999999988873 321 11 233442 1 11111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCC-------cccc-cchhhhcccCCCCcEEEEEccc
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGD-------YNKW-EPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~-------~~~~-~~l~~~l~~~~~gs~IivTTR~ 279 (515)
+ .+. ....+.++....+.+. -..++.+|++|+++.-- .... +.|.+.+..+ .-++|.+|..
T Consensus 247 ~-------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~ 316 (821)
T CHL00095 247 L-------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTL 316 (821)
T ss_pred h-------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCH
Confidence 1 111 1111222222222222 23568999999995210 0011 1233333221 2345655555
Q ss_pred HHHHhh-------hCCcceeeccCCChhhhHHHHHHh
Q 040597 280 ESVARM-------MGSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 280 ~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
+..... ......+.+...+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 443221 122457788888888888887643
No 91
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00011 Score=76.26 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=104.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc----ce--------------eeE
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF----EK--------------VIW 196 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~--------------~~w 196 (515)
.+++|.+..+..+.+++..+ .-...+.++|+.|+||||+|+.+.+.......- .| .-|
T Consensus 17 ~diiGq~~~v~~L~~~i~~~----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 47899998888888888643 234678899999999999998887631111000 00 001
Q ss_pred EEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE
Q 040597 197 VCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV 275 (515)
Q Consensus 197 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 275 (515)
+.+... ......++.++.+.+.-. ..+++-++|+|++........+.|...+........+|+
T Consensus 93 ~~i~g~----------------~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 93 LEIDGA----------------SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EEeecc----------------ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 111100 000011122222221111 135667899999976655556667777766545666666
Q ss_pred Ecc-cHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 276 TTR-NESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 276 TTR-~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
+|. ...+... ......+++.++++++....+.+.+-..+. .-..+.+..|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 553 3333222 223568899999999988888776532221 1124557788899988654
No 92
>PF14516 AAA_35: AAA-like domain
Probab=98.00 E-value=0.00024 Score=70.86 Aligned_cols=202 Identities=13% Similarity=0.112 Sum_probs=118.7
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-----ccHHH
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEEIR 207 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 207 (515)
+.+..|.|...-+++.+.|... -..+.|.|+-.+|||+|...+.+..+ +..+. ++++++..- .+...
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~-~~~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQ-QQGYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHH-HCCCE-EEEEEeecCCCcccCCHHH
Confidence 3456678886777788888642 35899999999999999998887422 23443 457776542 24555
Q ss_pred HHHHHHHHh----cCCCC-------CcccHHHHHHHHHHHh---cCCcEEEEecccCCCCc--ccccchhhhcc----cC
Q 040597 208 VAKAIIEGL----GESAS-------SLSEFQSLMSHIHRSI---EGKKFFLLLDDVWDGDY--NKWEPFFFCVK----NG 267 (515)
Q Consensus 208 ~~~~il~~l----~~~~~-------~~~~~~~l~~~l~~~L---~~kr~LlVLDdvw~~~~--~~~~~l~~~l~----~~ 267 (515)
.++.++..+ +.... ...........+.+.+ .+++.+|+||+++..-. ...+++...+. ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 555555444 33221 0112223333444432 26899999999964221 11122333222 11
Q ss_pred C----CCc-E-EEEEc-ccHHHHhh----hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 268 L----HGS-K-ILVTT-RNESVARM----MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 268 ~----~gs-~-IivTT-R~~~v~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
. ..+ + |++.+ ........ +.....+.|++++.+|...|..+.... -.....++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHHCCC
Confidence 1 011 1 22222 11111111 122457899999999999998876421 1122388999999999
Q ss_pred ChhhHhhhhhcchh
Q 040597 337 PLAAKVIGILLHSK 350 (515)
Q Consensus 337 PLai~~~~~~L~~~ 350 (515)
|.-+..++..+..+
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999765
No 93
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.00 E-value=2.5e-05 Score=79.13 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=75.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~-- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY-- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc--
Confidence 45778888999999888733 467889999999999999998753334567788899999887766554322
Q ss_pred HhcCCCCCccc-HHHHHHHHHHHh--cCCcEEEEecccCCCCccc-ccchhhhcc
Q 040597 215 GLGESASSLSE-FQSLMSHIHRSI--EGKKFFLLLDDVWDGDYNK-WEPFFFCVK 265 (515)
Q Consensus 215 ~l~~~~~~~~~-~~~l~~~l~~~L--~~kr~LlVLDdvw~~~~~~-~~~l~~~l~ 265 (515)
......-.- ..-..+.+.... .+++++||+|++...+... +..+...+.
T Consensus 246 --rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 --RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred --CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 111100000 011222222222 2468999999996655332 444444443
No 94
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.00032 Score=68.28 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=73.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.++|++|+||||+|+.+++.......-...-|+.++.. .+...+.+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------DLVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------HHHHHHhccc-----hHHHHHHHHHc---c
Confidence 345889999999999999999773111111111224544421 1222221111 01112222221 2
Q ss_pred cEEEEecccCCC---------CcccccchhhhcccCCCCcEEEEEcccHHHHhhh--------CCcceeeccCCChhhhH
Q 040597 241 KFFLLLDDVWDG---------DYNKWEPFFFCVKNGLHGSKILVTTRNESVARMM--------GSTNIIFIEQLTEEECW 303 (515)
Q Consensus 241 r~LlVLDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~ 303 (515)
.-+|+||++... ..+..+.+...+.....+..||+++....+.... .-...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999642 1112233444444444556777777644332211 11457899999999999
Q ss_pred HHHHHhhcC
Q 040597 304 SLFKRLAFF 312 (515)
Q Consensus 304 ~Lf~~~~~~ 312 (515)
+++...+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887643
No 95
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=9.6e-05 Score=68.75 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=77.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999998776321 1 1211 00000 0 001 123
Q ss_pred EEEEecccCCCCcccccchhhhccc-CCCCcEEEEEcccHH-------HHhhhCCcceeeccCCChhhhHHHHHHhhcCC
Q 040597 242 FFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILVTTRNES-------VARMMGSTNIIFIEQLTEEECWSLFKRLAFFD 313 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~~~-------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 313 (515)
-+|++||++.... ..+...+.. ...|..||+|++.+. +...+....++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788899952211 123333221 134678999887432 22233445689999999999888887776421
Q ss_pred CCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 314 RSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
+ ..--+++..-|++.+.|.--.+
T Consensus 164 ~----l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S----VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C----CCCCHHHHHHHHHHccCCHHHH
Confidence 1 1122456677777777654443
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00022 Score=76.71 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=109.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-...|..++... .-...+.++|+.|+||||+|+.+++..... ..+... ...+..-...+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN----RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHhc
Confidence 46789888888888888643 234578899999999999999988742211 111000 011111122222222
Q ss_pred HhcCC-----CCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 GLGES-----ASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
..... .......+.+.+.+... ..+++-++|+|+++..+...++.|...+........+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 11110 00111222222222111 1345568999999877766777787777764445555555443 33332
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
. ......+.+..++.++....+...+...+. .-..+.+..|++.++|.+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2 233567888899998888877766533221 1113457788999999775443
No 97
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=4.7e-05 Score=74.14 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=104.0
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
++.+.+|+.++..+...+...+ ..-+..|.|.|..|.|||.+.+++++.. . -..+|+++-+.++...++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS--CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC--cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHH
Confidence 5678999999999999887654 2345667999999999999999999853 1 1358999999999999999999
Q ss_pred HHhcCCCCCc-------ccHHHHHHHHHHH--h--cCCcEEEEecccCCCCcccccc--hhhhc--cc-CCCCcEEEEEc
Q 040597 214 EGLGESASSL-------SEFQSLMSHIHRS--I--EGKKFFLLLDDVWDGDYNKWEP--FFFCV--KN-GLHGSKILVTT 277 (515)
Q Consensus 214 ~~l~~~~~~~-------~~~~~l~~~l~~~--L--~~kr~LlVLDdvw~~~~~~~~~--l~~~l--~~-~~~gs~IivTT 277 (515)
...+..+.+. .+.......+.++ . .++.++||||+++.-. +.+. +...+ .. .....-+|+++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 9986322211 1222333333331 1 2468999999995422 2221 11111 11 11122344444
Q ss_pred ccHH---HHhhhCC--cceeeccCCChhhhHHHHHHh
Q 040597 278 RNES---VARMMGS--TNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 278 R~~~---v~~~~~~--~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
-... -...+++ ..++....-+.++...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3221 1111233 335667778888888877653
No 98
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.92 E-value=0.00016 Score=70.41 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=72.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcE
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKF 242 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 242 (515)
-+.++|++|+|||++|+.+++...-........|+.++. . +++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999987776311111111123444442 1 1222222111 11122222221 336
Q ss_pred EEEecccCCC---------CcccccchhhhcccCCCCcEEEEEcccHHHHhhh--C------CcceeeccCCChhhhHHH
Q 040597 243 FLLLDDVWDG---------DYNKWEPFFFCVKNGLHGSKILVTTRNESVARMM--G------STNIIFIEQLTEEECWSL 305 (515)
Q Consensus 243 LlVLDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--~------~~~~~~l~~L~~~~a~~L 305 (515)
+|+||++... ..+.++.+...+.....+.+||+++..+...... . ....+.+++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1122344555555544566677776543222111 1 135789999999999999
Q ss_pred HHHhhc
Q 040597 306 FKRLAF 311 (515)
Q Consensus 306 f~~~~~ 311 (515)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888764
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.92 E-value=3.7e-05 Score=65.49 Aligned_cols=70 Identities=23% Similarity=0.180 Sum_probs=40.3
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC-CcE
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG-KKF 242 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~-kr~ 242 (515)
|.|+|++|+|||++|+.+++. ...+ .+.++.+.-.+ .........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccccc---------------ccccccccccccccccccccccce
Confidence 579999999999999999984 3211 23444332110 01112223333333333233 389
Q ss_pred EEEecccCCCC
Q 040597 243 FLLLDDVWDGD 253 (515)
Q Consensus 243 LlVLDdvw~~~ 253 (515)
+|++||++...
T Consensus 61 vl~iDe~d~l~ 71 (132)
T PF00004_consen 61 VLFIDEIDKLF 71 (132)
T ss_dssp EEEEETGGGTS
T ss_pred eeeeccchhcc
Confidence 99999996543
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00036 Score=74.15 Aligned_cols=191 Identities=14% Similarity=0.077 Sum_probs=110.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|-+.-+..+..++..+ .-...+.++|+.|+||||+|+.+.+.......... .++..-...+.|..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHc
Confidence 47899888888888888643 34567889999999999999988874211111000 00000000111111
Q ss_pred HhcC-----CCCCcccHHHH---HHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHh
Q 040597 215 GLGE-----SASSLSEFQSL---MSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVAR 284 (515)
Q Consensus 215 ~l~~-----~~~~~~~~~~l---~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 284 (515)
.-.. ........+++ .+.+... ..+++-++|+|+++..+...++.|...+......+.+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0000 00001122222 2222221 2456668999999877766777787777765556666665543 33332
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
. ......+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+-.+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 233567899999999988888876643221 122455677888888877543
No 101
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00022 Score=66.93 Aligned_cols=174 Identities=22% Similarity=0.202 Sum_probs=98.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+|+|.++-++++.=.+......+..+--+.++|++|.||||||..+.+. ...++.. .-....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----tsGp~l----------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----TSGPAL----------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----cccccc-----------
Confidence 47999888888777666654433566788999999999999999999983 4333321 111100
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhc-------c-cCCCCcE-----------EEE
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCV-------K-NGLHGSK-----------ILV 275 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l-------~-~~~~gs~-----------Iiv 275 (515)
....++...+.. |+. .=+|.+|.++..+...-+.+.++. . ..+++++ |=.
T Consensus 89 ---------eK~gDlaaiLt~-Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 89 ---------EKPGDLAAILTN-LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred ---------cChhhHHHHHhc-CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 111112222211 222 223445666543321111111111 1 1122222 445
Q ss_pred EcccHHHHhhhCC--cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 276 TTRNESVARMMGS--TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 276 TTR~~~v~~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
|||.-.+...+.. .-+..++--+.+|-.++..+.+..-+ ..-.++.+.+|++...|-|--.
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHH
Confidence 8886554433222 34677888889998888888774322 1223456889999999999543
No 102
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=0.0002 Score=69.05 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
+....+.++|++|+||||+|+.+++...-...-....++.++.. ++ .....+ .....+...+...
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l----~~~~~g-----~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DL----VGEYIG-----HTAQKTREVIKKA-- 104 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hh----hhhhcc-----chHHHHHHHHHhc--
Confidence 34567889999999999999999863110011111123333221 11 111100 0111122222221
Q ss_pred CCcEEEEecccCCCC--------cccccchhhhcccCCCCcEEEEEcccHHHHh-------hhCC-cceeeccCCChhhh
Q 040597 239 GKKFFLLLDDVWDGD--------YNKWEPFFFCVKNGLHGSKILVTTRNESVAR-------MMGS-TNIIFIEQLTEEEC 302 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~-------~~~~-~~~~~l~~L~~~~a 302 (515)
...+|++|+++... .+..+.+...+........+|+++....... .... ...+.+++++.++-
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 23488999996522 1122334333333333345556654432211 0111 34688999999999
Q ss_pred HHHHHHhhc
Q 040597 303 WSLFKRLAF 311 (515)
Q Consensus 303 ~~Lf~~~~~ 311 (515)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987764
No 103
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00037 Score=74.24 Aligned_cols=191 Identities=17% Similarity=0.154 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.....+.+++..+ .-...+.++|+.|+||||+|+.+.+.......-+ ..+++.-...+.|..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 47899999888888888743 3456778899999999999998875311111000 001111111122211
Q ss_pred HhcCC-----C---CCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEE-EcccHHHHh
Q 040597 215 GLGES-----A---SSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILV-TTRNESVAR 284 (515)
Q Consensus 215 ~l~~~-----~---~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~ 284 (515)
..... . .....+.++.+.+... ..++.-++|+|+++......++.|...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 10000 0 0011122222222211 145666889999987766677777777765444555554 444443332
Q ss_pred h-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 285 M-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 285 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
. ......+.+.+++.++....+...+...+- .-..+.+..|++.++|.+..+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 223567889999999988888776643221 112345677788888866533
No 104
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00036 Score=68.80 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh-------------cccceeeEEEeCCc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK-------------RNFEKVIWVCVSDT 202 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------~~F~~~~wv~~~~~ 202 (515)
+++|-+...+.+.+.+..+ .-.....++|+.|+||+++|..+.+..... ..++-..|+.-...
T Consensus 5 ~iiGq~~~~~~L~~~i~~~----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 5788888888888888643 235789999999999999997776531111 11222344421100
Q ss_pred ccHHHHHHHHHHHhc--CCCCCcccHHH---HHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEE
Q 040597 203 FEEIRVAKAIIEGLG--ESASSLSEFQS---LMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVT 276 (515)
Q Consensus 203 ~~~~~~~~~il~~l~--~~~~~~~~~~~---l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivT 276 (515)
..-..+-..-+...+ ......-.+++ +.+.+... ..+++-++|+|++...+....+.+...+.... .+.+|++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 000000000111111 01111112222 22222221 24567789999998877777777888886544 3445555
Q ss_pred c-ccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 277 T-RNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 277 T-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
| ..+.+... .+....+.+.+++.++..+.+.+...... .......++..++|.|..+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 4 44444333 33467899999999999999987642111 111135788999999976544
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.86 E-value=0.00024 Score=79.78 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=83.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc------ceeeE-EEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIW-VCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~w-v~~~~~~~~~~ 207 (515)
..++||+.++.+++..|... ....+.++|++|+|||++|+.+... +...+ ...+| ++++ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-----~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~------~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-----TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMG------A 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHH------H
Confidence 35899999999999999753 2345568999999999999988773 32211 22222 2211 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh--cCCcEEEEecccCCCC-----cc---cccchhhhcccCCCCcEEEEEc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGD-----YN---KWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~-----~~---~~~~l~~~l~~~~~gs~IivTT 277 (515)
+ +. .. ....+.+.....+.+.+ .+++.+|++|+++.-. .. .-+.+...+.. + .-.+|-+|
T Consensus 240 l----~a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g-~i~~IgaT 309 (852)
T TIGR03346 240 L----IA---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-G-ELHCIGAT 309 (852)
T ss_pred H----hh---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-C-ceEEEEeC
Confidence 1 10 00 00012222222222222 2468999999996321 00 11123322211 1 23455555
Q ss_pred ccHHHHhh-------hCCcceeeccCCChhhhHHHHHHhh
Q 040597 278 RNESVARM-------MGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 278 R~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
..+..... ......+.+...+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54433211 1224568899899999999887553
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.0002 Score=74.74 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=92.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccc--eeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE--KVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
....+.|+|++|+|||+|++.+.+. +...+. .+++++.. .+...+...+... ..+. +.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHH
Confidence 3456899999999999999999984 444432 34455433 3333444444321 1222 22333
Q ss_pred cCCcEEEEecccCCCCccc--ccchhhhccc-CCCCcEEEEEcccHH---------HHhhhCCcceeeccCCChhhhHHH
Q 040597 238 EGKKFFLLLDDVWDGDYNK--WEPFFFCVKN-GLHGSKILVTTRNES---------VARMMGSTNIIFIEQLTEEECWSL 305 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~--~~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~L 305 (515)
. +.-+|||||++...... .+.+...+.. ...|..||+||.... +...+....++++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999996432111 1233333321 123445777776431 122233356899999999999999
Q ss_pred HHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 306 FKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 306 f~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
+.+.+...+ ..--+++..-|++.+.|..-.+
T Consensus 289 l~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEG----IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHH
Confidence 998875321 1122456777888888766544
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00036 Score=72.31 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=91.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhccc-c-eeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-E-KVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
..-+.|+|.+|+|||+|++.+++. +.... . .++|++. .++..++...+... .... +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345999999999999999999984 43332 2 3556653 34555555555322 1222 222223
Q ss_pred CCcEEEEecccCCCC-cccc-cchhhhccc-CCCCcEEEEEcc-cHHHH--------hhhCCcceeeccCCChhhhHHHH
Q 040597 239 GKKFFLLLDDVWDGD-YNKW-EPFFFCVKN-GLHGSKILVTTR-NESVA--------RMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~-~~~~-~~l~~~l~~-~~~gs~IivTTR-~~~v~--------~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
.+.-+|++||+.... ...+ ..+...+.. ...|..||+||. .+.-. ..+....++.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999996421 1111 223333321 123456888874 33211 12233557889999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
.+.+....- . --.++..-|++.+.|..-.+
T Consensus 273 ~~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-E---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-C---CCHHHHHHHHhccccCHHHH
Confidence 888743221 1 12456677777777654433
No 108
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.0002 Score=74.02 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=86.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
..-+.|+|+.|+|||+|++.+++. +......+++++. ..+...+...+... .. ..++.... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999984 3332233455542 23344444444321 11 22333333 3
Q ss_pred cEEEEecccCCCCcccc--cchhhhccc-CCCCcEEEEEccc-HH--------HHhhhCCcceeeccCCChhhhHHHHHH
Q 040597 241 KFFLLLDDVWDGDYNKW--EPFFFCVKN-GLHGSKILVTTRN-ES--------VARMMGSTNIIFIEQLTEEECWSLFKR 308 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~--~~l~~~l~~-~~~gs~IivTTR~-~~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~ 308 (515)
.-+|++||+.......+ +.+...+.. ...|..||+||.. +. +...+....++.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999865432212 233333321 1235568888754 21 222233456889999999999999988
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 309 LAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
++...+. .--.++..-|+..+.+.
T Consensus 283 k~~~~~~----~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSI----RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCC
Confidence 8754321 11234455566655543
No 109
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0012 Score=61.40 Aligned_cols=183 Identities=18% Similarity=0.226 Sum_probs=109.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESASS--LSEFQSLMSHIHR 235 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~ 235 (515)
.+..++.++|.-|+|||.+++..... ..+ +.++=+.+.. ..+...+...|+..+..+... ..-.++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45579999999999999999944321 111 1122233333 356677888888888773221 1123334444444
Q ss_pred Hh-cCCc-EEEEecccCCCCcccccchhhhcccCCCCc---EEEEEcccH-------HHHhhhC-Ccce-eeccCCChhh
Q 040597 236 SI-EGKK-FFLLLDDVWDGDYNKWEPFFFCVKNGLHGS---KILVTTRNE-------SVARMMG-STNI-IFIEQLTEEE 301 (515)
Q Consensus 236 ~L-~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs---~IivTTR~~-------~v~~~~~-~~~~-~~l~~L~~~~ 301 (515)
.. ++++ ..++.|+..+...+..+.++....-...++ +|+..-..+ .+..... .... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 43 5677 899999997766666665554443111111 233332211 0111111 1334 8999999999
Q ss_pred hHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhh
Q 040597 302 CWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGIL 346 (515)
Q Consensus 302 a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 346 (515)
...++..+..+...+ .+--..+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999988887655322 22233566788999999999999887643
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.79 E-value=0.00032 Score=76.94 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=84.9
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-----cceeeEEEeCCcccHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~ 210 (515)
.++||++++.++++.|... ...-+.++|++|+|||++|+.+++.. +... .++.+|.. +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~-----~~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~---- 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIG---- 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHH----
Confidence 5899999999999988853 22344689999999999999988631 1111 13344321 111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCC--------Ccccccc-hhhhcccCCCCcEEEEEcccH
Q 040597 211 AIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDG--------DYNKWEP-FFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 211 ~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~--------~~~~~~~-l~~~l~~~~~gs~IivTTR~~ 280 (515)
.++. +. ....+.+.....+.+.+ +.++.+|++|+++.- ...+... +...+..+ .-++|-+|..+
T Consensus 252 ~lla---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~~ 325 (758)
T PRK11034 252 SLLA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQ 325 (758)
T ss_pred HHhc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCChH
Confidence 1111 10 00112222222222222 346789999999531 1111111 33333221 23455555444
Q ss_pred HHHhh-------hCCcceeeccCCChhhhHHHHHHhh
Q 040597 281 SVARM-------MGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 281 ~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
..... ......+.++.++.++...++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33211 1224689999999999999988653
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.79 E-value=0.00038 Score=77.92 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++||+.++.++++.|... ....+.++|++|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-----~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-----CcCceEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999754 334566999999999999998887
No 112
>PRK08116 hypothetical protein; Validated
Probab=97.79 E-value=0.00011 Score=70.88 Aligned_cols=103 Identities=25% Similarity=0.269 Sum_probs=59.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.|+|.+|+|||.||..+++. +......++++++ ..++..+........ ..+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45889999999999999999984 3333334556653 344555554443221 112222 223333333
Q ss_pred EEEEecccCCCCcccccc--hhhhcccC-CCCcEEEEEccc
Q 040597 242 FFLLLDDVWDGDYNKWEP--FFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTTR~ 279 (515)
||||||+.......|.. +...+... ..|..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995443334533 44444321 345668888864
No 113
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.76 E-value=0.00012 Score=62.68 Aligned_cols=88 Identities=25% Similarity=0.168 Sum_probs=46.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC-
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK- 240 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k- 240 (515)
..+.|+|++|+||||+++.++.. .......+++++.+........... ............. ......+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSG-ELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCH-HHHHHHHHHHHHhcC
Confidence 57899999999999999999873 3222223555554443222111111 1111111111112 22223333333333
Q ss_pred cEEEEecccCCCC
Q 040597 241 KFFLLLDDVWDGD 253 (515)
Q Consensus 241 r~LlVLDdvw~~~ 253 (515)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999996643
No 114
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=0.00024 Score=75.93 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=39.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+++|-++.++++..++..........+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999888654322234468999999999999999999873
No 115
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.71 E-value=0.00019 Score=66.77 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=68.2
Q ss_pred cccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 132 IDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
++-.+++|-+.+.+.+++....--. ..+..-+.+||..|.|||++++.+.+. .... +.--|.+..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G~pannvLL~G~rGtGKSSlVkall~~--y~~~--GLRlIev~k---------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-GLPANNVLLWGARGTGKSSLVKALLNE--YADQ--GLRLIEVSK---------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-CCCCcceEEecCCCCCHHHHHHHHHHH--Hhhc--CceEEEECH----------
Confidence 4456899999999998866543221 245667888999999999999998873 2211 111222222
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhccc
Q 040597 212 IIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKN 266 (515)
Q Consensus 212 il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~ 266 (515)
.+..++..+.+.++. ...||+|.+||+-- .+...+..++..|..
T Consensus 89 ---------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 89 ---------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ---------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 122334444444442 45799999999843 233456777777753
No 116
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00058 Score=67.19 Aligned_cols=96 Identities=8% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCC
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSF 316 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 316 (515)
+++=++|+|+++..+...-+.+...+..-..++.+|++|.+. .+... .+....+.+.+++.+++.+.+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 456689999998877777777777777666677777777653 33332 3336788999999999988886531
Q ss_pred CCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 317 EDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 317 ~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
.+ ...+..++..++|.|+....+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2225678999999998765543
No 117
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00062 Score=67.87 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=88.7
Q ss_pred ccccccc-hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 136 EVFSGVD-EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 136 ~~vGr~~-~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.++|..+ -++.+.+.+.. +.-.....++|+.|+||||+|..+.+........... ++..-...+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK----NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 3566343 44555555542 2346778999999999999998886531111101000 0000001111100
Q ss_pred HhcCC------CCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HH
Q 040597 215 GLGES------ASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VA 283 (515)
Q Consensus 215 ~l~~~------~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~ 283 (515)
.-... .......+++.+.+... ..+.+=++|+|++...+....+.+...+.....++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 00000 00111223332222211 234556799999987776677778888877666777777776543 33
Q ss_pred hh-hCCcceeeccCCChhhhHHHHHH
Q 040597 284 RM-MGSTNIIFIEQLTEEECWSLFKR 308 (515)
Q Consensus 284 ~~-~~~~~~~~l~~L~~~~a~~Lf~~ 308 (515)
.. ......+++.+++.++..+.+.+
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 22 23367899999999998887765
No 118
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0011 Score=65.50 Aligned_cols=176 Identities=8% Similarity=0.031 Sum_probs=100.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC------
Q 040597 145 NELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE------ 218 (515)
Q Consensus 145 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~------ 218 (515)
+.+.+.+.. +.-...+.+.|+.|+||+++|..+............ .++..-...+.+...-.+
T Consensus 12 ~~l~~~~~~----~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQ----GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHc----CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 445555543 234568889999999999999888753211111100 000000111111110000
Q ss_pred -CCCCcccHHHHH---HHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCcce
Q 040597 219 -SASSLSEFQSLM---SHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGSTNI 291 (515)
Q Consensus 219 -~~~~~~~~~~l~---~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~~~ 291 (515)
.....-.++++. +.+... ..+++=++|+|+++..+....+.+...+..-..++.+|++|.+. .+... .+....
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000111233322 222221 13566688899998888888888888888766777777777654 34332 334678
Q ss_pred eeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 292 IFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 292 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
+.+.+++.+++.+.+...... . ...+...+..++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 999999999999888765411 0 112456788899999644
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.0013 Score=69.74 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=89.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. ..+..++...+... ..+ .+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 45899999999999999999983 43322 23455543 33444444433221 111 22233332
Q ss_pred CcEEEEecccCCCCc-cccc-chhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHHH
Q 040597 240 KKFFLLLDDVWDGDY-NKWE-PFFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 240 kr~LlVLDdvw~~~~-~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
-=+|||||+..... ..|. .|...+.. ...|..|||||... .+...+....++.+.+.+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34788999965322 2232 24444432 12355688888752 222334456788999999999999999
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 308 RLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
+++....- .--.+++.-|++.+.+..-
T Consensus 457 kka~~r~l----~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQL----NAPPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCC----CCCHHHHHHHHHhccCCHH
Confidence 88754321 1124556666766665533
No 120
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.65 E-value=0.00042 Score=77.59 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=75.4
Q ss_pred CccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+.-++.+...+.... ..+.+..++.++|+.|+|||++|+.+++. ....-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 358899988888888876431 11223457889999999999999988862 211112234444443111 1
Q ss_pred HHHHHhcCCCCCcc---cHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEE
Q 040597 211 AIIEGLGESASSLS---EFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVT 276 (515)
Q Consensus 211 ~il~~l~~~~~~~~---~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivT 276 (515)
.....+.+.++... ....+...++ ....-+|+||++...+...++.+...+..+. ..+.||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11222222222111 1112222222 2233699999998777777777777665431 12337777
Q ss_pred ccc
Q 040597 277 TRN 279 (515)
Q Consensus 277 TR~ 279 (515)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 765
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0017 Score=65.39 Aligned_cols=137 Identities=19% Similarity=0.196 Sum_probs=83.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
....+.|+|..|.|||.|++.+.+ ......+....+.++ .+.....++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 577899999999999999999998 455555433333332 223333444333321 123344443
Q ss_pred CcEEEEecccCCCCc-cccc-chhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHHH
Q 040597 240 KKFFLLLDDVWDGDY-NKWE-PFFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 240 kr~LlVLDdvw~~~~-~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
.-=++++||++.-.. +.|+ .+...|.. ...|-.||+|++.. .+...+....++.+.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334889999965221 1222 24444432 22344799999642 333344556789999999999999999
Q ss_pred HhhcCC
Q 040597 308 RLAFFD 313 (515)
Q Consensus 308 ~~~~~~ 313 (515)
+.+...
T Consensus 255 kka~~~ 260 (408)
T COG0593 255 KKAEDR 260 (408)
T ss_pred HHHHhc
Confidence 876443
No 122
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.60 E-value=0.0009 Score=59.36 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred cchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc------------------ccceeeEEEeCCc
Q 040597 141 VDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR------------------NFEKVIWVCVSDT 202 (515)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------------------~F~~~~wv~~~~~ 202 (515)
+...+.+.+.+.. +.-...+.++|+.|+||+++|..+.+...... ..+-..|+.-...
T Consensus 3 ~~~~~~L~~~~~~----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 3 EEIIELLKNLIKS----GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp HHHHHHHHHHHHC----TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred HHHHHHHHHHHHc----CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 3444555555542 23456789999999999999987765311111 1222333322221
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc
Q 040597 203 FEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 203 ~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT 277 (515)
. .....+++. .+.+.+ .++.=++|+||++..+.+..+.|...+.....++.+|++|
T Consensus 79 ~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 79 K------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp S------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred c------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 0 011233332 222222 2456689999999888888999999998877888888888
Q ss_pred ccHH-HH-hhhCCcceeeccCCC
Q 040597 278 RNES-VA-RMMGSTNIIFIEQLT 298 (515)
Q Consensus 278 R~~~-v~-~~~~~~~~~~l~~L~ 298 (515)
.+.. +. ........+.+.+++
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE----
T ss_pred CChHHChHHHHhhceEEecCCCC
Confidence 8754 22 223345566666654
No 123
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00074 Score=75.91 Aligned_cols=135 Identities=14% Similarity=0.213 Sum_probs=78.4
Q ss_pred CccccccchHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+..++.+.+.+..... ...+..++.++|+.|+|||++|+.+... ....-...+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 3689999999999988875321 1233567889999999999999998862 222222334445544222111
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC-----------CCCcEEEEE
Q 040597 211 AIIEGLGESASSL---SEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-----------LHGSKILVT 276 (515)
Q Consensus 211 ~il~~l~~~~~~~---~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivT 276 (515)
...+.+.++.. .....+...++ .....+|+||++...+...++.|...+..+ ...+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11121111111 11122333332 233459999999888777788777777543 123447777
Q ss_pred ccc
Q 040597 277 TRN 279 (515)
Q Consensus 277 TR~ 279 (515)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.59 E-value=0.00071 Score=74.85 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=69.8
Q ss_pred CccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+..++.+.+.+.... .......++.++|+.|+|||+||+.++.. . +...+.++++.-.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 357888888888888776421 11234557899999999999999999873 2 23345555554222111
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhccc
Q 040597 211 AIIEGLGESAS--SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKN 266 (515)
Q Consensus 211 ~il~~l~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~ 266 (515)
+...++.... .......+.+.++ .....+|+||+++......++.|...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222111 1111222333332 23456999999988777777777776653
No 125
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0019 Score=63.60 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=68.0
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHh-hhCCcceeeccCCChhhhHHHHHHhhcCCCCC
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVAR-MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSF 316 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 316 (515)
++.=++|+|+++..+....+.+...+..-..++.+|++|.+. .+.. ..+....+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 445688999998888888888888887766677777766654 3433 33446789999999999988886532
Q ss_pred CCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 317 EDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 317 ~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
.. ....++..++|.|+....+.
T Consensus 181 ~~------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 181 IT------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred Cc------hHHHHHHHcCCCHHHHHHHh
Confidence 11 13467899999998775553
No 126
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0016 Score=66.62 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=73.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcE
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKF 242 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 242 (515)
++.|.|+-++||||+++.+... .... .++++..+...... ...+....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~-----------------~l~d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRI-----------------ELLDLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchh-----------------hHHHHHHHHHHhhccCCc
Confidence 9999999999999999666552 2111 45554433211110 011111122222122778
Q ss_pred EEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHhh------hCCcceeeccCCChhhhHHH
Q 040597 243 FLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVARM------MGSTNIIFIEQLTEEECWSL 305 (515)
Q Consensus 243 LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~------~~~~~~~~l~~L~~~~a~~L 305 (515)
+++||.|... ..|......+.+.++. +|++|+-+...... .+....+.+-||+..|-..+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999999554 5788877777766555 78888877654322 23366889999999887654
No 127
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=0.00017 Score=68.30 Aligned_cols=102 Identities=20% Similarity=0.119 Sum_probs=56.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.|+|.+|+|||.||..+++. .......+.++++. +++..|-...... .....+ .+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~~----l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEKF----LQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHHH----HHHh-cC
Confidence 357899999999999999999984 43433445666553 3444443332211 111122 2222 35
Q ss_pred cEEEEecccCCCCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 241 KFFLLLDDVWDGDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
-=||||||+.......|. .+...+... .+.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 668999999544333443 344444322 222337777753
No 128
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.48 E-value=0.0025 Score=64.99 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=92.0
Q ss_pred CccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.++.|-+..++++.+.+.. .. .+-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 3567777777777765531 10 01134678999999999999999999873 32222 22211 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC------c----cc----ccchhhhccc--CCCC
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD------Y----NK----WEPFFFCVKN--GLHG 270 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~------~----~~----~~~l~~~l~~--~~~g 270 (515)
. +.....+. ....+.+.+.......+.+|+||+++... . .. +..+...+.. ...+
T Consensus 214 ~----l~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 E----FVQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred H----HHHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 1 11111110 11122222333335678999999985310 0 00 1112222221 1235
Q ss_pred cEEEEEcccHHHHhh--hC---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 271 SKILVTTRNESVARM--MG---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 271 s~IivTTR~~~v~~~--~~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
..||.||........ .. -...+++...+.++-..+|........ .....+ ...+++.+.|..-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCCH
Confidence 567777775443221 11 145688888888887777775543211 111112 3456666666543
No 129
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0034 Score=62.48 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=100.9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhc------
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLG------ 217 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~------ 217 (515)
-+++.+.+.. +.-...+.+.|+.|+||+++|..+.........-+. .++..-...+.+...-.
T Consensus 11 ~~~l~~~~~~----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 11 YEQLVGSYQA----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHc----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEE
Confidence 3455665543 245678889999999999999877653111110000 00000000011100000
Q ss_pred -CCCC-CcccHHHHHH---HHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCc
Q 040597 218 -ESAS-SLSEFQSLMS---HIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGST 289 (515)
Q Consensus 218 -~~~~-~~~~~~~l~~---~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~ 289 (515)
.... ..-.++++.+ .+... ..+++=++|+|+++..+...-+.+...+..-..++.+|++|.+. .+... .+..
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0000 1122333322 22211 13566789999998888778888888887766677777777654 34433 3345
Q ss_pred ceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhH
Q 040597 290 NIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAK 341 (515)
Q Consensus 290 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 341 (515)
..+.+.+++.+++.+.+..... . ..+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~-----~----~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVT-----M----SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccC-----C----CHHHHHHHHHHcCCCHHHHH
Confidence 6789999999998887765320 0 12235678999999996443
No 130
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.47 E-value=0.00023 Score=66.64 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=30.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV 199 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 199 (515)
.-.++|+|..|+|||||+..+.. .....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34678999999999999998887 46778887777754
No 131
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.00072 Score=70.52 Aligned_cols=164 Identities=12% Similarity=0.140 Sum_probs=88.5
Q ss_pred CccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-----cceeeEEEeCC
Q 040597 135 GEVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSD 201 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~~~ 201 (515)
.++.|.+..++++.+.+...-. .-..++-+.++|++|+|||++|+.+++. .... +....|+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 3567788888888877532100 0134567899999999999999999984 3322 22344555443
Q ss_pred cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCCc-------cc-----ccchhhhcccC-
Q 040597 202 TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGDY-------NK-----WEPFFFCVKNG- 267 (515)
Q Consensus 202 ~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~~-------~~-----~~~l~~~l~~~- 267 (515)
. +++...... ....+..+.+..+... .+++++|+||+++..-. .. ...+...+...
T Consensus 260 ~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 111111000 0011122222222222 35789999999964210 11 11233333221
Q ss_pred -CCCcEEEEEcccHHHHhh-h----CCcceeeccCCChhhhHHHHHHhh
Q 040597 268 -LHGSKILVTTRNESVARM-M----GSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 268 -~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
..+..||.||........ + .-...++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 124445556644432221 1 114568999999999999998876
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.45 E-value=0.00041 Score=77.50 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=76.5
Q ss_pred CccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+.-++.+.+.+.... ....+..++.++|+.|+|||.||+.+... +-......+-++++.-....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 468899999999988885421 11345568999999999999999988762 21111222222322211111
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEE
Q 040597 211 AIIEGLGESASSL---SEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVT 276 (515)
Q Consensus 211 ~il~~l~~~~~~~---~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivT 276 (515)
.+ ..+.+..+.- .....+...++ +....+|+||++...+...++.|...+..+. ..+-||+|
T Consensus 640 ~~-~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hh-ccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11 1121111111 11122333333 2456799999998777767777777665442 34556777
Q ss_pred ccc
Q 040597 277 TRN 279 (515)
Q Consensus 277 TR~ 279 (515)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 133
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=6.7e-05 Score=66.95 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhh-cccceeeE
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIW 196 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 196 (515)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854333 45676765
No 134
>CHL00176 ftsH cell division protein; Validated
Probab=97.43 E-value=0.0022 Score=69.19 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=92.1
Q ss_pred CccccccchHHHHH---HHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELL---NKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~---~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.++.|.++..+++. ..+..... .....+-+.++|++|+|||+||+.++.. .. +-|+.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC-----CCeeeccHH----H
Confidence 35677665554444 43332211 1123557899999999999999999873 21 223333321 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC----------cccccc-hhhhc---cc--CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD----------YNKWEP-FFFCV---KN--GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~----------~~~~~~-l~~~l---~~--~~~gs 271 (515)
+. ..... .....+...+.......+++|+||+++.-. ...+.. +...+ .. ...+-
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 00000 011223334444446778999999995321 011111 22222 21 22345
Q ss_pred EEEEEcccHHHHhh-h-C---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 272 KILVTTRNESVARM-M-G---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 272 ~IivTTR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
.||.||........ + . -...+.+...+.++-.++++.++.... . ........+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~--~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L--SPDVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c--chhHHHHHHHhcCCCC
Confidence 56666665433221 1 1 145788888888888888887764311 1 1122345677777773
No 135
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0036 Score=63.69 Aligned_cols=150 Identities=21% Similarity=0.288 Sum_probs=85.9
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
..+...+.+.|++|+|||+||..++. ...|+.+=-++-.+ . ++. .+......+.....+.-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~---m----------iG~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPED---M----------IGL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHH---c----------cCc--cHHHHHHHHHHHHHHhh
Confidence 35677888999999999999998885 46777543332111 0 000 11112233344444445
Q ss_pred cCCcEEEEecccCCCCcccccc------------hhhhccc-CCCCcEE--EEEcccHHHHhhhCC----cceeeccCCC
Q 040597 238 EGKKFFLLLDDVWDGDYNKWEP------------FFFCVKN-GLHGSKI--LVTTRNESVARMMGS----TNIIFIEQLT 298 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~~~~------------l~~~l~~-~~~gs~I--ivTTR~~~v~~~~~~----~~~~~l~~L~ 298 (515)
+..--.||+||+.. .-+|-. +...+.. ..+|-|. +-||....+...|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 66678999999832 223332 2223332 2335454 447777777777653 4578888888
Q ss_pred h-hhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHc
Q 040597 299 E-EECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKC 333 (515)
Q Consensus 299 ~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c 333 (515)
. ++..+.++..-. ....+...++.+...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 667776665431 12233445555665555
No 136
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.41 E-value=0.00021 Score=64.45 Aligned_cols=100 Identities=21% Similarity=0.389 Sum_probs=50.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
..-+.|+|.+|+|||.||..+.+. -+...+ .+.|+++ .+++..+ ...... ...+..... +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~~------~~L~~~l----~~~~~~-~~~~~~~~~----l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFITA------SDLLDEL----KQSRSD-GSYEELLKR----LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEEH------HHHHHHH----HCCHCC-TTHCHHHHH----HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEeec------Cceeccc----cccccc-cchhhhcCc----cc-c
Confidence 456999999999999999998874 223333 3555643 3333333 222111 122222222 22 2
Q ss_pred cEEEEecccCCCCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 241 KFFLLLDDVWDGDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
-=||||||+-......|. .+...+... .++ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 347889999655433443 233333321 223 47778864
No 137
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.00048 Score=66.13 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=55.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.|+|++|+|||.||..+.+. .......+.|+++ .+++..+..... ..........+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 45899999999999999999873 3333334555543 344444433211 11222222222 234
Q ss_pred EEEEecccCCCCccccc--chhhhcccCCCCcEEEEEcccH
Q 040597 242 FFLLLDDVWDGDYNKWE--PFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~--~l~~~l~~~~~gs~IivTTR~~ 280 (515)
=||||||+.......|. .+...+.....+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999654333332 3444444322123488888753
No 138
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.39 E-value=0.0039 Score=60.07 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
-|.|.|++|+|||+||+.+.+ .... ....+++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 566899999999999999986 2221 2345566555544444
No 139
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0058 Score=60.74 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=65.7
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCC
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSF 316 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 316 (515)
++.=++|+|+++..+....+.+...+..-.+++.+|++|.+ ..+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999998888899998888876667766666655 444433 3345789999999999998887642 1
Q ss_pred CCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 317 EDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 317 ~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
. . ...++..++|.|+....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755443
No 140
>PRK06526 transposase; Provisional
Probab=97.34 E-value=0.00043 Score=66.10 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=53.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.|+|++|+|||+||..+.... ....+. +.|+ +..+++..+...... .. +...+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~-v~f~------t~~~l~~~l~~~~~~-----~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGHR-VLFA------TAAQWVARLAAAHHA-----GR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCCc-hhhh------hHHHHHHHHHHHHhc-----Cc---HHHHHHHh--cc
Confidence 3468999999999999999987632 223332 3332 233444444332111 11 12222222 23
Q ss_pred cEEEEecccCCCCccccc--chhhhccc-CCCCcEEEEEcccH
Q 040597 241 KFFLLLDDVWDGDYNKWE--PFFFCVKN-GLHGSKILVTTRNE 280 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~--~l~~~l~~-~~~gs~IivTTR~~ 280 (515)
.-|||+||+.......+. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322222 24444432 22344 88888753
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.33 E-value=0.00057 Score=70.16 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=84.5
Q ss_pred ccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|.+..++++.+.+...-. .-...+.+.|+|++|+|||++|+.+++ .....| +.+... .
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----e 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----E 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----h
Confidence 466778888877776632100 013456788999999999999999998 343333 222210 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc-----------ccccchhhhc---cc--CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY-----------NKWEPFFFCV---KN--GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~-----------~~~~~l~~~l---~~--~~~gs 271 (515)
+.....+ .....+...+.....+.+.+|+||+++.... .....+...+ .. ...+.
T Consensus 253 ----L~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 ----LIQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred ----hhhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1111110 0111122222222345788999999843100 0001122222 11 12355
Q ss_pred EEEEEcccHHHHhh-h----CCcceeeccCCChhhhHHHHHHhhc
Q 040597 272 KILVTTRNESVARM-M----GSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 272 ~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
.||+||........ + .-...+++...+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 68888775443332 1 1145788999999999999987653
No 142
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.32 E-value=0.0088 Score=60.19 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=116.2
Q ss_pred ccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHH-HHHhcchhhhcccceeeEEEeCCc---ccHHHHHHHHHHH
Q 040597 140 GVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKVIWVCVSDT---FEEIRVAKAIIEG 215 (515)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~il~~ 215 (515)
|.+..++|..||.+. .-.+|.|.|+-|+||+.|+ .++.++.+. +..+++.+- .+-..++..+..+
T Consensus 1 R~e~~~~L~~wL~e~-----~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-----PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcC-----CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHh
Confidence 567788999999854 4469999999999999999 777765222 444443321 1222333333333
Q ss_pred hcC-----------------------CCCC--cccHHHHHH-------HHHH-------------------Hh---cCCc
Q 040597 216 LGE-----------------------SASS--LSEFQSLMS-------HIHR-------------------SI---EGKK 241 (515)
Q Consensus 216 l~~-----------------------~~~~--~~~~~~l~~-------~l~~-------------------~L---~~kr 241 (515)
+|- .... .+...++.+ .|++ +| ...+
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 321 1110 111111111 1111 11 1135
Q ss_pred EEEEecccCCCCc---ccccchhh---hcccCCCCcEEEEEcccHHHHh----hhCC--cceeeccCCChhhhHHHHHHh
Q 040597 242 FFLLLDDVWDGDY---NKWEPFFF---CVKNGLHGSKILVTTRNESVAR----MMGS--TNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 242 ~LlVLDdvw~~~~---~~~~~l~~---~l~~~~~gs~IivTTR~~~v~~----~~~~--~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
-+||+||.-.... ..|+.+.. .+-. .+=.+||++|-+..... .+.. ...+.|...+++.|..+...+
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 6899999854321 12222221 1112 23346888887654443 3322 567889999999999999988
Q ss_pred hcCCCCC------------CC----ccchHHHHHHHHHHcCCCChhhHhhhhhcchh-hHHhhhh
Q 040597 310 AFFDRSF------------ED----YEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK-EWQRILD 357 (515)
Q Consensus 310 ~~~~~~~------------~~----~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~-~w~~~l~ 357 (515)
....... .. ......-....++.+||=-.-|..+++.++.. .-+.+++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~ 293 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVE 293 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHH
Confidence 7543110 00 01234456677888999888888888888877 3333333
No 143
>PRK09183 transposase/IS protein; Provisional
Probab=97.32 E-value=0.001 Score=63.81 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=52.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.|+|++|+|||+||..+.... ....+ .+.+++. ..+...+...... .. +...+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a-~~~G~-~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA-VRAGI-KVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH-HHcCC-eEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCC
Confidence 467799999999999999987631 22222 2334432 2333333222111 01 12222222 2345
Q ss_pred EEEEecccCCCCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 242 FFLLLDDVWDGDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999653322232 344444321 2355 7888864
No 144
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0045 Score=58.42 Aligned_cols=134 Identities=11% Similarity=0.143 Sum_probs=72.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE--e--CC-----cccHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC--V--SD-----TFEEI 206 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~--~--~~-----~~~~~ 206 (515)
.+.++......++.++.. ..++.+.|++|.|||+||..+..+.-....|+.++-.. + .+ +-+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 456777888888887752 24899999999999999988876422234454433321 1 11 01111
Q ss_pred ----HHHHHHHHHhcCCCCCcccHHHHHH--------HHHHHhcCCc---EEEEecccCCCCcccccchhhhcccCCCCc
Q 040597 207 ----RVAKAIIEGLGESASSLSEFQSLMS--------HIHRSIEGKK---FFLLLDDVWDGDYNKWEPFFFCVKNGLHGS 271 (515)
Q Consensus 207 ----~~~~~il~~l~~~~~~~~~~~~l~~--------~l~~~L~~kr---~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs 271 (515)
-.+.-+...+..-.. ....+.+.. .=..++++.. -+||+|.+.+.+. ..+...+...+.+|
T Consensus 129 eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~~s 204 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCCCC
Confidence 112222222211000 001111100 0012445554 4999999977654 34444455556799
Q ss_pred EEEEEcccH
Q 040597 272 KILVTTRNE 280 (515)
Q Consensus 272 ~IivTTR~~ 280 (515)
++|+|--..
T Consensus 205 k~v~~GD~~ 213 (262)
T PRK10536 205 TVIVNGDIT 213 (262)
T ss_pred EEEEeCChh
Confidence 999987543
No 145
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.0011 Score=61.43 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=53.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh----cCC-----CCCcccHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL----GES-----ASSLSEFQSL 229 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l----~~~-----~~~~~~~~~l 229 (515)
+.-.++.|+|++|+|||++|.++... ....-..++|++... ++...+.+ +.... ... ..+..+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45689999999999999999888763 334456789999876 55554443 22221 000 1111222233
Q ss_pred HHHHHHHhcC-CcEEEEeccc
Q 040597 230 MSHIHRSIEG-KKFFLLLDDV 249 (515)
Q Consensus 230 ~~~l~~~L~~-kr~LlVLDdv 249 (515)
...+.+.+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4445454433 4568899987
No 146
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0014 Score=65.31 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=82.9
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-------------------ccceeeE
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-------------------NFEKVIW 196 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~w 196 (515)
+++|-+....++..+.... ......+.++|++|+||||+|..+.+...... ..+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhc---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 3567777788888887743 22344699999999999999988876421111 1123333
Q ss_pred EEeCCccc---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEE
Q 040597 197 VCVSDTFE---EIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKI 273 (515)
Q Consensus 197 v~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~I 273 (515)
++.++... ..+..+++.+....... .++.-++++|+++..+...-+.+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 43333222 12222222222221110 356779999999877766666677777666667788
Q ss_pred EEEcccH-HHHhhh-CCcceeeccC
Q 040597 274 LVTTRNE-SVARMM-GSTNIIFIEQ 296 (515)
Q Consensus 274 ivTTR~~-~v~~~~-~~~~~~~l~~ 296 (515)
|++|... .+.... .....+.+.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8887743 333322 2245566666
No 147
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.30 E-value=0.012 Score=58.74 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.0
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-.+.+.+.+.... .....+|+|.|.=|+|||++.+.+.+.
T Consensus 4 ~a~~la~~I~~~~--~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 4 YAKALAEIIKNPD--SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHhccC--CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666666432 257889999999999999999998873
No 148
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.30 E-value=0.0016 Score=61.29 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH--------hcCC-CCCcccHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG--------LGES-ASSLSEFQSL 229 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~--------l~~~-~~~~~~~~~l 229 (515)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+. ++... +... ..+..+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 45679999999999999999888763 33344668899887 55554432 23222 1100 1111122223
Q ss_pred HHHHHHHhcCCcEEEEeccc
Q 040597 230 MSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 230 ~~~l~~~L~~kr~LlVLDdv 249 (515)
.+.+...+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 34444444456678999987
No 149
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.28 E-value=0.0038 Score=59.10 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=56.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.++|.+|+|||+||..+++. ....-..++++++ .+++..+-..... .......+. +.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQLL----NDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHHHH----HHhc-c
Confidence 357899999999999999999984 3333334555543 3444444333321 111222222 2333 3
Q ss_pred cEEEEecccCCCCcccccc--hhhhcccC-CCCcEEEEEccc
Q 040597 241 KFFLLLDDVWDGDYNKWEP--FFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTTR~ 279 (515)
.=||||||+.......|.. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997655455653 33333321 112347777753
No 150
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.00057 Score=62.41 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=61.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhcC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS--LSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~~L~~ 239 (515)
.++.|+|+.|.||||+|..+.. +...+-..++.+. ..++.......++++++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999988876 3333333334342 1112222233455555433221 2233445555544 233
Q ss_pred CcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 240 KKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 240 kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 4458999999443222222232222 23577899999874
No 151
>PRK06921 hypothetical protein; Provisional
Probab=97.26 E-value=0.0014 Score=63.16 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=54.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcc-cceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
...+.++|..|+|||.||..+++. +... -..++|++.. +++..+...+ +.....+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 467899999999999999999984 3332 3345666642 2233332221 11111222 22 2
Q ss_pred CcEEEEecccCC-----CCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 240 KKFFLLLDDVWD-----GDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 240 kr~LlVLDdvw~-----~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
+-=||||||+.. +....|. .+...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 2222443 244444322 224457888763
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0023 Score=70.32 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=67.7
Q ss_pred ccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.++|.++.++.+.+.+.... ....+...+.++|++|+|||++|+.+... .. ...+.++++.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 57898888888888876321 11234567899999999999999988763 22 123344544322111 1
Q ss_pred HHHHhcCCCC--CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcc
Q 040597 212 IIEGLGESAS--SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 212 il~~l~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
+..-++.+.. .......+.+.++ .....+|+||++.......++.+...+.
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1111222111 0011112222222 2345799999998877666777766664
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.25 E-value=0.0046 Score=65.37 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=89.6
Q ss_pred CccccccchHHHHHHHHh---ccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLL---CES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|-++..+++.+.+. ... ......+-+.++|++|+|||+||+.+++. ... -++.++.. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~-----~~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGV-----PFFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCC-----CeeeccHH----H
Confidence 467777666555544332 110 00233456889999999999999999873 221 22333221 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc----------cccc----chhhhccc--CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY----------NKWE----PFFFCVKN--GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~----------~~~~----~l~~~l~~--~~~gs 271 (515)
+ ...... .....+...+.......+++|+||+++.-.. ..+. .+...+.. ...+-
T Consensus 124 ~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 F----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred H----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 1 111100 0112233333333455678999999954210 0111 12111211 12244
Q ss_pred EEEEEcccHHHHh-hh----CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 272 KILVTTRNESVAR-MM----GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 272 ~IivTTR~~~v~~-~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
.||.||....... .+ .-...+.+...+.++-.++|......... . + ......+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~--~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A--P--DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C--c--chhHHHHHHhCCCCC
Confidence 4666665443211 11 12457888888888888888776532211 1 1 112346777777743
No 154
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.0035 Score=58.10 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999887
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.25 E-value=0.0011 Score=74.22 Aligned_cols=135 Identities=14% Similarity=0.211 Sum_probs=75.8
Q ss_pred CccccccchHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+.-+..+.+.+..... .+.+..++.++|+.|+|||+||+.+.+. +-..-...+-++.+.-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4688988888888887753211 1234456789999999999999988762 2111122333444432221111
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHHhcCCc-EEEEecccCCCCcccccchhhhcccC-----------CCCcEEEEE
Q 040597 211 AIIEGLGESAS--SLSEFQSLMSHIHRSIEGKK-FFLLLDDVWDGDYNKWEPFFFCVKNG-----------LHGSKILVT 276 (515)
Q Consensus 211 ~il~~l~~~~~--~~~~~~~l~~~l~~~L~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivT 276 (515)
..-++.++. .......+ .+.+..++ .+|+||++...+...++.|...+..+ ...+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111221110 11111223 33333344 68999999887777777777776543 134556667
Q ss_pred ccc
Q 040597 277 TRN 279 (515)
Q Consensus 277 TR~ 279 (515)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 156
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.0015 Score=58.89 Aligned_cols=38 Identities=37% Similarity=0.562 Sum_probs=29.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
....+|.|+|+.|+||||+|+.++. .....+...++++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 3456999999999999999999987 4555565555553
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0013 Score=68.26 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+.-...|.+.+..+ .-.......|+-|+||||+|+.++....... | ....++..-...++|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 46799998888888888754 3345667899999999999998876322211 1 11112222222222322
Q ss_pred Hhc--------CCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHh
Q 040597 215 GLG--------ESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVAR 284 (515)
Q Consensus 215 ~l~--------~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~ 284 (515)
.-. .......++.++.+.+.-.- .++-=+.|+|.|+-.+...|+.+...+..-...-.+|+.|.+. .+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 100 00111223333333332221 3455588999998888888998888887666666666666554 3332
Q ss_pred -hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC
Q 040597 285 -MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKG 335 (515)
Q Consensus 285 -~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~g 335 (515)
..+..+.|.+..++.++....+...+...+- .-..+...-|++..+|
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~G 212 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEG 212 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCC
Confidence 2344678999999999888888777643321 1223334455555555
No 158
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.17 E-value=0.0019 Score=63.36 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=59.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
..+-+.|+|..|+|||.||..+++.. ....+. +.+++++ .++..+-...... +.....+. + .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~~-v~~~~~~------~l~~~lk~~~~~~-----~~~~~l~~----l-~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL-AKKGVS-STLLHFP------EFIRELKNSISDG-----SVKEKIDA----V-K 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCC-EEEEEHH------HHHHHHHHHHhcC-----cHHHHHHH----h-c
Confidence 34678999999999999999999842 233333 4555543 4445554444321 12222222 2 2
Q ss_pred CcEEEEecccCCCCcccccc--hhhhc-ccC-CCCcEEEEEcc
Q 040597 240 KKFFLLLDDVWDGDYNKWEP--FFFCV-KNG-LHGSKILVTTR 278 (515)
Q Consensus 240 kr~LlVLDdvw~~~~~~~~~--l~~~l-~~~-~~gs~IivTTR 278 (515)
+-=||||||+..+....|.. +...+ ... ..+..+|+||-
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 45689999997665566753 43333 322 23445788885
No 159
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.15 E-value=0.0029 Score=59.12 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 204 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 204 (515)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999888763 323334577887765554
No 160
>PRK07261 topology modulation protein; Provisional
Probab=97.15 E-value=0.0011 Score=59.34 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998875
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0012 Score=71.29 Aligned_cols=125 Identities=14% Similarity=0.257 Sum_probs=74.8
Q ss_pred CccccccchHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+.-+..+.+.+..... .+.+..+...+|+.|+|||.||+.+... +-+.=+..+-+++|.-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHH----
Confidence 4689999999999888865322 2356678889999999999999988762 11111333444444321111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCcE-EEEecccCCCCcccccchhhhcccC
Q 040597 211 AIIEGLGESASSLSEFQSLMSHIHRSIEGKKF-FLLLDDVWDGDYNKWEPFFFCVKNG 267 (515)
Q Consensus 211 ~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDdvw~~~~~~~~~l~~~l~~~ 267 (515)
=++.|.+.++.--..++ .-.|-+..+.++| +|.||.+....+...+.|...|.++
T Consensus 565 -sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 -SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 12333333332211111 2233444456766 8889999877766677777777543
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=97.14 E-value=0.0067 Score=66.97 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=95.5
Q ss_pred cCCCcHHHHHHHHhcchhhhccc-ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEec
Q 040597 169 LGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLD 247 (515)
Q Consensus 169 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLD 247 (515)
|.++||||+|..++++. ....+ ..++-+++++..... ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78999999999998841 12222 235566777644333 333444333211110 01245799999
Q ss_pred ccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhh-hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHH
Q 040597 248 DVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPI 325 (515)
Q Consensus 248 dvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~ 325 (515)
+++..+....+.|...+......+++|+++.+. .+... .+....+.+.+++.++....+...+...+- .-..+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CCCHHH
Confidence 999888777777888777545566666665543 33322 233678999999999888887766532211 112456
Q ss_pred HHHHHHHcCCCChhhH
Q 040597 326 GRKIAHKCKGLPLAAK 341 (515)
Q Consensus 326 ~~~I~~~c~glPLai~ 341 (515)
...|++.|+|.+-.+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7889999999885443
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.00018 Score=62.13 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=47.5
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEE
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFF 243 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~L 243 (515)
|.|+|++|+|||+||+.+++. ... ...-+.++...+..+++...--. ..... .....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~--~~~~~-~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS--NGQFE-FKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET---TTTTC-EEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec--ccccc-cccccccccc-----cceeE
Confidence 679999999999999999872 311 23345677767666554322111 00000 0000000001 17899
Q ss_pred EEecccCCCCcccccchhhhc
Q 040597 244 LLLDDVWDGDYNKWEPFFFCV 264 (515)
Q Consensus 244 lVLDdvw~~~~~~~~~l~~~l 264 (515)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765555555555555
No 164
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.12 E-value=0.0031 Score=59.27 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=54.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhccc------ceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF------EKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SL 223 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~ 223 (515)
+.-.++.|+|.+|+|||+||.+++.. ....- ..++|++....++...+. ++......... ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45679999999999999999888653 22222 567899988777665443 33333221100 11
Q ss_pred ccHHHHHHHHHHHhc----CCcEEEEecccC
Q 040597 224 SEFQSLMSHIHRSIE----GKKFFLLLDDVW 250 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~----~kr~LlVLDdvw 250 (515)
.+.+++...+.+... .+.-|||+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 334455555554432 345589999983
No 165
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.11 E-value=0.0025 Score=63.44 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=63.4
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccce-eeEEEeCC-cccHHHHHHHHHHHhcCC
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEK-VIWVCVSD-TFEEIRVAKAIIEGLGES 219 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~~~~-~~~~~~~~~~il~~l~~~ 219 (515)
-..++++.+..-. .-.-+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+ ...+.++++.+...+...
T Consensus 119 ~~~RvID~l~PiG----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3345777776432 2245699999999999999998873 333 2244 36666665 456678888888777654
Q ss_pred CCCcccHH-----HHHHHHHHHh--cCCcEEEEeccc
Q 040597 220 ASSLSEFQ-----SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 220 ~~~~~~~~-----~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
..+..... .....+.+++ ++++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 32221111 1122222222 589999999998
No 166
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.10 E-value=0.0031 Score=59.66 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcc----cceeeEEEeCCcccHHHHHHHHHHHhcCCCC------------C
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAKAIIEGLGESAS------------S 222 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 222 (515)
+.-.++.|+|.+|+|||++|.+++........ -..++|++....++..++. ++++..+.... +
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45689999999999999999888643112221 3578999988877654443 33333332111 1
Q ss_pred cccHHHHHHHHHHHh-cC-CcEEEEeccc
Q 040597 223 LSEFQSLMSHIHRSI-EG-KKFFLLLDDV 249 (515)
Q Consensus 223 ~~~~~~l~~~l~~~L-~~-kr~LlVLDdv 249 (515)
..+...+...+...+ +. +.-|||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 112223334444444 33 6679999988
No 167
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.0019 Score=58.94 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=62.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccceeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.++||-++-++++.-.-. +.+.+-+.|.||+|+||||-+..+++. .... +-+.+.=++.|+.-.
T Consensus 27 ~dIVGNe~tv~rl~via~-----~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRG--------- 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK-----EGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERG--------- 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHH-----cCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccccc---------
Confidence 478898888877765544 346778899999999999988877763 1111 123333334443222
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHh-------cCCcEEEEecccCCCCcccccchhhhcc
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSI-------EGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L-------~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
++-+...++.+- .++.-++|||..+++....-..++....
T Consensus 92 ------------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 92 ------------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred ------------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 222222222211 3455689999998876555555555443
No 168
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.09 E-value=0.0013 Score=72.86 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=87.8
Q ss_pred CccccccchHHHHHHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.+.+|.++-+++++++|..... ......++.++|++|+||||+|+.++. .....|- -++++...+...+...--
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccchh
Confidence 4689999999999988763211 112345799999999999999999986 2333331 233333333222111100
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCccc----ccchhhhcccC---------------CCCcEEE
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNK----WEPFFFCVKNG---------------LHGSKIL 274 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~Ii 274 (515)
...+ . ....+.+.+... ....-+++||.++...... ...+...+... ....-+|
T Consensus 397 ~~~g-~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-S-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-C-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0011 0 111233333332 2234478899996543221 12233333211 1233344
Q ss_pred EEcccHHHHhh-hCCcceeeccCCChhhhHHHHHHhhc
Q 040597 275 VTTRNESVARM-MGSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 275 vTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
.|+..-.+... .+...++.+.+++.++-.++..++..
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 45543322211 23356889999999998888777663
No 169
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.09 E-value=0.0086 Score=57.84 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=94.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc-hhhhcccceeeEEEeCCcccH-HHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN-DEVKRNFEKVIWVCVSDTFEE-IRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~~~~~~~~-~~~~~~i 212 (515)
..++|-.++..++-.++....- .+....+.|+|+.|.|||+|......+ +++..+ ..-|........ .-.++.|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~-~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL-HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH-hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 4578888888888887764322 234567889999999999999887775 122233 333444443222 2234445
Q ss_pred HHHhc----CCCCCcccHHHHHHHHHHHhc------CCcEEEEecccCCCCcccccc-hhhhcc----cCCCCcEEEEEc
Q 040597 213 IEGLG----ESASSLSEFQSLMSHIHRSIE------GKKFFLLLDDVWDGDYNKWEP-FFFCVK----NGLHGSKILVTT 277 (515)
Q Consensus 213 l~~l~----~~~~~~~~~~~l~~~l~~~L~------~kr~LlVLDdvw~~~~~~~~~-l~~~l~----~~~~gs~IivTT 277 (515)
..++. .......+..+....+...|+ +-+.++|+|.++-.-...-.. +...|. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44443 221111222222233333332 235888998874322221122 233332 234556678899
Q ss_pred ccHH-------HHhhhCCcceeeccCCChhhhHHHHHHhh
Q 040597 278 RNES-------VARMMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 278 R~~~-------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
|-.- |-..+..-.++-++.++-++-..++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 22223333456677788888888888766
No 170
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.08 E-value=0.00089 Score=54.90 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 171
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.05 E-value=0.0034 Score=57.71 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=73.9
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
+-..++|-+...+.+++.-..-.. +.+..-|.+||.-|.|||+|++.+.+ .+....-. -|-|..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~-G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k----------- 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE-GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK----------- 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc-CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH-----------
Confidence 345789999888888865443221 34556789999999999999999988 34443322 222222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccC---CCCcEEEEEcccH
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNG---LHGSKILVTTRNE 280 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~---~~gs~IivTTR~~ 280 (515)
.+..++..+.+.|+. ...||+|..||+-- .+...+..++..+..+ .+...++..|.|+
T Consensus 122 --------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 --------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 111222233333332 46899999999843 2334677788887633 3344455555443
No 172
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0065 Score=60.22 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=47.4
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHhhh-CCcceeeccCCChhhhHHHHHHh
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VARMM-GSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
+++=++|+|++...+...-+.+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788877776666667776665445566777777643 33322 23567889999999988888653
No 173
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.00072 Score=64.58 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
...-+.++|.+|+|||.||..+.+. +...--.+.++++ .+++.++....... .....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHh-h
Confidence 4567899999999999999999985 3332233455544 34555555544431 1112222222 1
Q ss_pred CcEEEEecccCCCCccccc
Q 040597 240 KKFFLLLDDVWDGDYNKWE 258 (515)
Q Consensus 240 kr~LlVLDdvw~~~~~~~~ 258 (515)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999665444454
No 174
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.97 E-value=0.004 Score=59.66 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcc----cceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------CcccH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSEF 226 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 226 (515)
.-.+.=|+|.+|+|||+||.+++-...+... =..++|++....|+..++. +|++....... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4468889999999999999777643222221 2358999999999887765 46655432211 11122
Q ss_pred HH---HHHHHHHHh-cCCcEEEEeccc
Q 040597 227 QS---LMSHIHRSI-EGKKFFLLLDDV 249 (515)
Q Consensus 227 ~~---l~~~l~~~L-~~kr~LlVLDdv 249 (515)
++ +...+...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 33 333333333 344559999987
No 175
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.94 E-value=0.00069 Score=56.79 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998886
No 176
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0094 Score=66.24 Aligned_cols=178 Identities=13% Similarity=0.082 Sum_probs=90.0
Q ss_pred ccccccchHHHHHHHHhccC--------CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES--------SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|.+..++++.+.+...- -.-...+.+.|+|++|+|||+||+.+++. ....| +.++.. .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP----E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----H
Confidence 47788888888877663210 00133467889999999999999999873 32222 222211 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc-----------ccccchhhhcccC-CCCcEEEE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY-----------NKWEPFFFCVKNG-LHGSKILV 275 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~Iiv 275 (515)
+ .... . ......+...+.......+.+|+||+++.... .....+...+... ..+..+++
T Consensus 248 i----~~~~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 I----MSKY----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred H----hccc----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 1 1100 0 01112233333333456678999999844210 0112233333321 22333444
Q ss_pred -EcccHH-HHhhhC----CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 276 -TTRNES-VARMMG----STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 276 -TTR~~~-v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
||.... +...+. -...+.+...+.++-.+++....-... ... ......+++.+.|..-
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccc----ccCHHHHHHhCCCCCH
Confidence 444322 211111 134677777788887888775432111 011 1124567777777653
No 177
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0064 Score=64.36 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=92.5
Q ss_pred cCccccccchHHHHHHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
+.+-+|-++-.+++++.|.-..- ..-.-+++++||++|+|||+|++.+++ .....| +-++++.-.|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc---
Confidence 45789999999999999853211 123447999999999999999999997 454554 223444433332221
Q ss_pred HHHhcCCCC-CcccHHHHHHHHHHHhcCCcEEEEecccCCCCccccc----chhhhcc-cCCC------------CcE-E
Q 040597 213 IEGLGESAS-SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWE----PFFFCVK-NGLH------------GSK-I 273 (515)
Q Consensus 213 l~~l~~~~~-~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~----~l~~~l~-~~~~------------gs~-I 273 (515)
|.... -..-...+++.+++. +-+.-+++||.++....+.-. .+...|. ..++ =|. +
T Consensus 394 ----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 394 ----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00000 001112333444333 456778899998654322111 1222221 1111 132 4
Q ss_pred EEEcccHH--H-HhhhCCcceeeccCCChhhhHHHHHHhhc
Q 040597 274 LVTTRNES--V-ARMMGSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 274 ivTTR~~~--v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
.|||-|.- + +..+....++++.+-+++|-.++-+++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 45555431 1 22344567899999999998777666653
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.007 Score=67.52 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=82.1
Q ss_pred CccccccchHHHHHHHHhccC-CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES-SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|.++-++++.+++.... .......++.++|++|+|||++|+.+.+. ....|- -++++...+...+ .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i----~ 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEI----R 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHH----c
Confidence 357888888888887654211 00123358999999999999999999873 333331 1223332222221 1
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCccc----ccchhhhcc--------cC-------CCCcEEE
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNK----WEPFFFCVK--------NG-------LHGSKIL 274 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~----~~~l~~~l~--------~~-------~~gs~Ii 274 (515)
.. . ..........+.+.+.... ..+-+|+||.++...... ...+...+. +. ..+.-+|
T Consensus 391 g~-~-~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 391 GH-R-RTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred CC-C-CceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 00 0 0000011122333333332 233478999996543211 011222221 10 0123344
Q ss_pred EEcccHH-HHh-hhCCcceeeccCCChhhhHHHHHHhh
Q 040597 275 VTTRNES-VAR-MMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 275 vTTR~~~-v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.||.... +.. ......++++.+++.++-.+++..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4444321 111 12334688999999988888776553
No 179
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.0027 Score=62.89 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=54.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.++|..|+|||.||..+++. ....-..++|+++.. ++..+...-... ..+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRFNN---DKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHhcc---chhHHHH---H-HHhc-cC
Confidence 66999999999999999999984 322223456665432 333332211111 0111111 1 2222 22
Q ss_pred EEEEecccCCCCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 242 FFLLLDDVWDGDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
=||||||+.......|. .+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999654433342 344444422 224458888864
No 180
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0073 Score=55.30 Aligned_cols=88 Identities=23% Similarity=0.199 Sum_probs=50.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCC---CCcccH-HHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESA---SSLSEF-QSLMSHIHR 235 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~---~~~~~~-~~l~~~l~~ 235 (515)
++++.++|+.|+||||.+-+++.. .+..-..+..++... .....+-++...+.++.+. ....+. +.+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999999777763 333344566777653 2345566777777777541 112222 222333333
Q ss_pred HhcCCcEEEEecccC
Q 040597 236 SIEGKKFFLLLDDVW 250 (515)
Q Consensus 236 ~L~~kr~LlVLDdvw 250 (515)
.-.++.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333477778653
No 181
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.88 E-value=0.022 Score=60.20 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=87.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchh---hhccccee--eEEEeCCcccHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDE---VKRNFEKV--IWVCVSDTFEEIRVA 209 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~~--~wv~~~~~~~~~~~~ 209 (515)
..+-+|+.+..+|...+-..-..+.....+-|.|.+|.|||..+..|.+... -++.-+.. +.|+.-.-..+.+++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 3567899999999988865433223445889999999999999999987422 11222222 334444455688999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhccc-CCCCcEEEEEc
Q 040597 210 KAIIEGLGESASSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILVTT 277 (515)
Q Consensus 210 ~~il~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTT 277 (515)
..|...+...... .....+.|..+. +.+.++|++|+++..=...-+-+...|.| ..++|+++|-+
T Consensus 476 ~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 9999999876432 122233344433 24578999998743211122335555554 45688877655
No 182
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.01 Score=57.83 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=92.7
Q ss_pred ccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++=|-++.++++.+...-.-. +-.+++=|.++|++|.|||-||++|++. ....| +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH-----
Confidence 344567777777766532111 1256778999999999999999999983 44333 333331
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhc-CCcEEEEecccCCC-----------Cccc---ccchhhhcccC--CCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIE-GKKFFLLLDDVWDG-----------DYNK---WEPFFFCVKNG--LHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVLDdvw~~-----------~~~~---~~~l~~~l~~~--~~g 270 (515)
++.+..-+.. ..++..+.+.-+ ..+++|.+|.++.- +.+. .-+|...+... ...
T Consensus 220 ---ElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2333322221 234445555443 45899999988431 1111 11222233322 235
Q ss_pred cEEEEEcccHHHHhh-----hCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 271 SKILVTTRNESVARM-----MGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 271 s~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
-|||..|--.++... -.-...++++.-+.+.-.++|.-+.-. -+....-+ .+.|++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcC----HHHHHHhcCCCc
Confidence 688887765443322 112556777744444445555544422 11122223 345677777654
No 183
>PRK13695 putative NTPase; Provisional
Probab=96.85 E-value=0.0013 Score=59.11 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 184
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.011 Score=52.46 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHHhcCCcEEEEecccC-CCCc-ccccchhhhcccCCCCcEEEEEcccHHHHhhhC
Q 040597 224 SEFQSLMSHIHRSIEGKKFFLLLDDVW-DGDY-NKWEPFFFCVKNGLHGSKILVTTRNESVARMMG 287 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~~kr~LlVLDdvw-~~~~-~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~ 287 (515)
+.-++..-.+.+.+-+++-+|+=|.-- +-|+ -.|+.+.-+-.-+..|+.||++|.+..+...+.
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334455556777788899999988531 1122 345544333334567999999999998877654
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.84 E-value=0.014 Score=64.90 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=90.1
Q ss_pred ccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|.+..++++.+.+...-. .-...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~----- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP----- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-----
Confidence 456666666666555431100 0133456889999999999999999983 33222 333221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC------c-c-----cccchhhhccc--CCCCcEE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD------Y-N-----KWEPFFFCVKN--GLHGSKI 273 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~------~-~-----~~~~l~~~l~~--~~~gs~I 273 (515)
+++....+ .....+...+...-...+++|+||+++.-. . . ....+...+.. ...+--|
T Consensus 522 ---~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 522 ---EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ---HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 11111111 111122222222334568999999985310 0 0 01122222321 1223445
Q ss_pred EEEcccHHHHhh-h----CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 274 LVTTRNESVARM-M----GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 274 ivTTR~~~v~~~-~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
|.||........ + .-...+.+...+.++-.++|..+..... .....+ ...+++.|.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 656655433221 1 1245788888888888888876542211 111112 456778888755
No 186
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.83 E-value=0.0099 Score=53.73 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=65.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE---eCCcccHHHH------HHHHHHHhcCCC------CCccc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC---VSDTFEEIRV------AKAIIEGLGESA------SSLSE 225 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~------~~~il~~l~~~~------~~~~~ 225 (515)
-.+++|+|..|.|||||.+.++.. .....+.+++. +.. .+.... ..++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 458999999999999999999863 22334444442 221 111111 112344443321 11222
Q ss_pred HHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccC-CC-CcEEEEEcccHHHHhh
Q 040597 226 FQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNG-LH-GSKILVTTRNESVARM 285 (515)
Q Consensus 226 ~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v~~~ 285 (515)
-+...-.+...+...+-++++|+.-. .|......+...+... .. |..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22333345556667778899998632 2333344454444422 22 5678888887665433
No 187
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.83 E-value=0.0059 Score=60.14 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhh----cccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSE 225 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 225 (515)
+.-.++-|+|++|+|||+|+.+++-..... ..=..++||+....|++.++.+ +++.++.... ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 456788999999999999997765321221 1124689999999888877654 5555544321 1112
Q ss_pred HHHHH---HHHHHHh-cCCcEEEEeccc
Q 040597 226 FQSLM---SHIHRSI-EGKKFFLLLDDV 249 (515)
Q Consensus 226 ~~~l~---~~l~~~L-~~kr~LlVLDdv 249 (515)
.++.. ..+...+ ..+--|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33333 3333333 334558999987
No 188
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.0037 Score=66.03 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
.+.-++..++|++|+||||||.-+++. ..| .++=|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 356789999999999999999988863 233 36678888887777766666665543321100
Q ss_pred cCCcEEEEecccCCCCcccccchhhhc
Q 040597 238 EGKKFFLLLDDVWDGDYNKWEPFFFCV 264 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~~~~l~~~l 264 (515)
.+++..||+|.++-......+.+...+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHH
Confidence 257788899998654433344444444
No 189
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.81 E-value=0.0032 Score=66.88 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=35.1
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+++|....++.+...+.. ....-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~-----~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG-----PNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHH
Confidence 689999988888877653 2334568999999999999999986
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.79 E-value=0.0012 Score=65.25 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=40.7
Q ss_pred ccccccchHHHHHHHHhccCCC-CCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSE-QKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+++|.++.++++++++...... ....+++.|+|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999998754321 234688999999999999999999874
No 191
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.78 E-value=0.0057 Score=53.59 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC---cccHHHHHHHHHHHh-----cCC----CCC-cc---c
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEEIRVAKAIIEGL-----GES----ASS-LS---E 225 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~il~~l-----~~~----~~~-~~---~ 225 (515)
..|-|++..|.||||+|....- +...+=..+.++..-. ......+++.+ ..+ +.. ..+ .. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999966554 2222222334433222 23344444333 001 000 001 11 1
Q ss_pred HHHHHHHHHHHhcC-CcEEEEecccCCC---CcccccchhhhcccCCCCcEEEEEcccH
Q 040597 226 FQSLMSHIHRSIEG-KKFFLLLDDVWDG---DYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 226 ~~~l~~~l~~~L~~-kr~LlVLDdvw~~---~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
.....+..++.+.. .-=|||||++-.. ..-..+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233334444444 4459999998321 2224456777777666777899999984
No 192
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.75 E-value=0.006 Score=59.96 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=54.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESA-----SSLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~l 233 (515)
+.-+++-|+|++|+||||||.++... ....-..++||+....++.. .++.++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999887763 33334557799877766553 234443321 1123345555555
Q ss_pred HHHhc-CCcEEEEecccC
Q 040597 234 HRSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdvw 250 (515)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55543 456799999983
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.019 Score=59.08 Aligned_cols=57 Identities=32% Similarity=0.255 Sum_probs=34.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGE 218 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~ 218 (515)
.+.+|.++|.+|+||||+|.+++.. ....-..+.-|++.. .....+.++.+...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 5789999999999999999888763 332212333444322 11223445555555543
No 194
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.75 E-value=0.0061 Score=55.01 Aligned_cols=126 Identities=18% Similarity=0.108 Sum_probs=63.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC--C-------------CCCccc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE--S-------------ASSLSE 225 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~--~-------------~~~~~~ 225 (515)
-.+++|.|..|.|||||++.+..-. ....+.+++.-. +.......+-..++. + ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3589999999999999999987631 112233333211 111110111111110 0 001111
Q ss_pred HHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHhhhCCcceeec
Q 040597 226 FQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMGSTNIIFI 294 (515)
Q Consensus 226 ~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 294 (515)
-+...-.+...+..++=+++||+... .|....+.+...+.....+..||++|.+...... ...++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12223334555566778889998743 2222333344444322246678888888776543 2344444
No 195
>PRK06696 uridine kinase; Validated
Probab=96.75 E-value=0.0018 Score=60.85 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 140 GVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~--~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN--LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC--CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4556677777776532 35678999999999999999999887
No 196
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.75 E-value=0.0013 Score=56.72 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhh-hcccceeeEEEeCCcccHHHHHHHHHHHh
Q 040597 138 FSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEIRVAKAIIEGL 216 (515)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~l 216 (515)
||.-..++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|..+ ++..
T Consensus 1 vG~S~~~~~l~~~l~~~a---~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~--------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA---KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS--------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH---CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC---------------
T ss_pred CCCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh---------------
Confidence 455556666666665331 23356789999999999999988874221 1112110 0000
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC-CCCcEEEEEcccH
Q 040597 217 GESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-LHGSKILVTTRNE 280 (515)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTTR~~ 280 (515)
.+ .+.+.. .+.-.|+|+|+..-+......+...+... ....|+|.||..+
T Consensus 60 -------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 -------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 24556789999777666666677777643 5677999998753
No 197
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.74 E-value=0.011 Score=55.83 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCC------------------
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESA------------------ 220 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 220 (515)
+.-.++.|+|.+|+|||++|.++... ..+ +=..++|++..+. ...+.+.+ .+++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45679999999999999999988652 122 3346788888764 34444443 2222110
Q ss_pred --CCcccHHHHHHHHHHHhcC-CcEEEEecccC
Q 040597 221 --SSLSEFQSLMSHIHRSIEG-KKFFLLLDDVW 250 (515)
Q Consensus 221 --~~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw 250 (515)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999873
No 198
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.74 E-value=0.0078 Score=59.86 Aligned_cols=90 Identities=21% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhh---c-ccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSE 225 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 225 (515)
+.-.++-|+|.+|+|||+|+.+++-..... . .-..++||+....|++.++.+ +++.++.... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 456788899999999999998775322221 1 124689999999898887654 5555554321 1123
Q ss_pred HHHHH---HHHHHHh-cCCcEEEEeccc
Q 040597 226 FQSLM---SHIHRSI-EGKKFFLLLDDV 249 (515)
Q Consensus 226 ~~~l~---~~l~~~L-~~kr~LlVLDdv 249 (515)
.+++. ..+...+ ..+--|||+|.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 33332 2232233 234558899987
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.74 E-value=0.004 Score=57.00 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=61.7
Q ss_pred ccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC----C--cccHHH------
Q 040597 140 GVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS----D--TFEEIR------ 207 (515)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~----~--~~~~~~------ 207 (515)
+..+-...++.|.. ..++.+.|++|.|||.||....-+.-..+.|+.++++.-. + .|-+-+
T Consensus 5 ~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 5 KNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp -SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------
T ss_pred CCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 34455566677762 3589999999999999998777654445778877776311 1 011101
Q ss_pred -HHHHHHHHhcCCCCCcccHHHHHHH------HHHHhcCC---cEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc
Q 040597 208 -VAKAIIEGLGESASSLSEFQSLMSH------IHRSIEGK---KFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 -~~~~il~~l~~~~~~~~~~~~l~~~------l~~~L~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT 277 (515)
.+.-+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+.+.+++.. .+...+.||++|++-
T Consensus 78 p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~G 153 (205)
T PF02562_consen 78 PYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITG 153 (205)
T ss_dssp TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HHcccCCCcEEEEec
Confidence 1111222221110 11112222110 01223443 4699999997766555444 444556799999987
Q ss_pred ccH
Q 040597 278 RNE 280 (515)
Q Consensus 278 R~~ 280 (515)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 543
No 200
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.0069 Score=59.56 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESA-----SSLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~l 233 (515)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....+++. .+..++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45678999999999999999887753 33344567899887766653 233333221 1122345555555
Q ss_pred HHHhc-CCcEEEEeccc
Q 040597 234 HRSIE-GKKFFLLLDDV 249 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdv 249 (515)
...++ +..-+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55543 45679999997
No 201
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0091 Score=53.46 Aligned_cols=119 Identities=19% Similarity=0.140 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC--cccHHHHHHHHHHHhcC--CCCC----------ccc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGE--SASS----------LSE 225 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~~~----------~~~ 225 (515)
.-.+++|+|+.|.|||||.+.++.- .....+.+++.-.. ....... ...++. +.+. .+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 3468999999999999999999863 12233433332111 0001111 111110 0000 111
Q ss_pred HHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHhh
Q 040597 226 FQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVARM 285 (515)
Q Consensus 226 ~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 285 (515)
-+...-.+...+..++-+++||+-.. .|......+...+.....+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11122234555566778999998643 2223334444444433335678888888766654
No 202
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.015 Score=61.02 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
..++-|.++|++|.|||++|+.+.+ ...-+| +.+..+ +++....+. ....+.+.+.+.=+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vGe-----SEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVGE-----SERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcCc-----hHHHHHHHHHHHhh
Confidence 5678899999999999999999998 344444 333332 122222111 11112222222223
Q ss_pred CCcEEEEecccCCCCc-----------ccccchhhhcccCCCCcEEEE---EcccHHHHhh-hC---CcceeeccCCChh
Q 040597 239 GKKFFLLLDDVWDGDY-----------NKWEPFFFCVKNGLHGSKILV---TTRNESVARM-MG---STNIIFIEQLTEE 300 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~-----------~~~~~l~~~l~~~~~gs~Iiv---TTR~~~v~~~-~~---~~~~~~l~~L~~~ 300 (515)
--+++|.||.++.-.. ....++..-+........|+| |-|...+-.. +. ....+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 4568888888743110 011122222222222223333 4444333222 22 2566777777777
Q ss_pred hhHHHHHHhhcC
Q 040597 301 ECWSLFKRLAFF 312 (515)
Q Consensus 301 ~a~~Lf~~~~~~ 312 (515)
.-.++|+.++-.
T Consensus 606 aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 606 ARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHhc
Confidence 788888888744
No 203
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.011 Score=51.90 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 204 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 204 (515)
++.|+|.+|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999988873 333345677887766543
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.022 Score=57.07 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE--EIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
..++|+|+|++|+||||++..++.. ....=..+..++... +. ..+-++.....++.+.....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4579999999999999999888763 322212344555432 32 223333333344433221234444555444432
Q ss_pred cC-CcEEEEecccCCCC--cccccchhhhcc
Q 040597 238 EG-KKFFLLLDDVWDGD--YNKWEPFFFCVK 265 (515)
Q Consensus 238 ~~-kr~LlVLDdvw~~~--~~~~~~l~~~l~ 265 (515)
.. +.=+|++|-.-... ......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 23467778764322 223444444443
No 205
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.012 Score=55.61 Aligned_cols=126 Identities=21% Similarity=0.171 Sum_probs=74.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-----cccHHHHHHHHHHHhcCCCC------C-cccHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-----TFEEIRVAKAIIEGLGESAS------S-LSEFQ 227 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~------~-~~~~~ 227 (515)
.-.+++|+|..|+||||+++.+.. ....-.+.+++...+ .....+-..+++..++.... . .+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999986 333333444443222 22233455666776664321 1 12222
Q ss_pred HHHHHHHHHhcCCcEEEEecccCCCCcc-cccchhhhcc--cCCCCcEEEEEcccHHHHhhhCC
Q 040597 228 SLMSHIHRSIEGKKFFLLLDDVWDGDYN-KWEPFFFCVK--NGLHGSKILVTTRNESVARMMGS 288 (515)
Q Consensus 228 ~l~~~l~~~L~~kr~LlVLDdvw~~~~~-~~~~l~~~l~--~~~~gs~IivTTR~~~v~~~~~~ 288 (515)
.-.-.+.+.|.-++-|+|.|..-+.-.. .-.++...+. ....|-..+..|-+-.+...++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2233466677888999999986442211 1122333332 12336678888988888877654
No 206
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.65 E-value=0.005 Score=53.14 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.65 E-value=0.019 Score=59.95 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
..++-|.++|++|+|||.+|+.+.+. ....| +-++.+. +.... .. .....+.+.+...-.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~----------l~~~~----vG-ese~~l~~~f~~A~~ 316 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK----------LFGGI----VG-ESESRMRQMIRIAEA 316 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH----------hcccc----cC-hHHHHHHHHHHHHHh
Confidence 34577899999999999999999873 32222 1122111 11100 00 011122222222224
Q ss_pred CCcEEEEecccCCCCc--cc------c----cchhhhcccCCCCcEEEEEcccHHHH-hhh----CCcceeeccCCChhh
Q 040597 239 GKKFFLLLDDVWDGDY--NK------W----EPFFFCVKNGLHGSKILVTTRNESVA-RMM----GSTNIIFIEQLTEEE 301 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~--~~------~----~~l~~~l~~~~~gs~IivTTR~~~v~-~~~----~~~~~~~l~~L~~~~ 301 (515)
..+++|++|+++..-. .. - ..+...+.....+--||.||.+.... ..+ .-...+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 5789999999953110 00 0 11122222222333455566544321 111 124578888888888
Q ss_pred hHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 302 CWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 302 a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
-.++|..+......... . ......+++.+.|.-
T Consensus 397 R~~Il~~~l~~~~~~~~-~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSW-K--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCcc-c--ccCHHHHHhhcCCCC
Confidence 88888877643221110 0 111455677776654
No 208
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.64 E-value=0.0028 Score=58.20 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=52.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh---
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI--- 237 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L--- 237 (515)
-+++.|.|.+|.||||++..+... .... ...+.+..........+ .+..+.. ..++..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L----~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKEL----REKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHH----HHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHH----HHhhCcc---hhhHHHHHhcCCcccccc
Confidence 368889999999999999888763 3332 22333333332222222 2222211 111111100000000
Q ss_pred ---cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 238 ---EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 238 ---~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
..+.-+||+|++...+...+..+....+. .|+++|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999966655555555555444 477787765433
No 209
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.64 E-value=0.0091 Score=57.14 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=52.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcc-cHHHHHHHHHHHhcCC-------CCCcccHH----
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTF-EEIRVAKAIIEGLGES-------ASSLSEFQ---- 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 227 (515)
-.-++|.|..|.|||||++.+++ .++.+|+ .++++-+.+.. ...++.+.+...-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35689999999999999999998 4555564 44555666544 3345555554421111 11111111
Q ss_pred -HHHHHHHHHh---cCCcEEEEeccc
Q 040597 228 -SLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 228 -~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344444 389999999998
No 210
>PRK09354 recA recombinase A; Provisional
Probab=96.61 E-value=0.0088 Score=59.32 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESA-----SSLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~l 233 (515)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999887763 33344567899988877653 334443321 1122345555555
Q ss_pred HHHhc-CCcEEEEecccC
Q 040597 234 HRSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdvw 250 (515)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456699999983
No 211
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.60 E-value=0.011 Score=57.59 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
..++++|+|++|+||||++..++.....+..-..+..|+..... .....+......++.+.....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999998887632222111245566654311 122223333333333322223334444444433 3
Q ss_pred CCcEEEEeccc
Q 040597 239 GKKFFLLLDDV 249 (515)
Q Consensus 239 ~kr~LlVLDdv 249 (515)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346677753
No 212
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.57 E-value=0.0048 Score=54.96 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh
Q 040597 137 VFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 216 (515)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 216 (515)
++|....+.++++.+..-. ....-|.|+|..|+||+.+|+.+++... ..-...+-|+++. .+...+-.+++-..
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHh---CCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhccc
Confidence 3677777888887776543 2224567999999999999999998421 1111223344443 23332222222211
Q ss_pred cCCCCCc-ccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC------C-----CCcEEEEEccc
Q 040597 217 GESASSL-SEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG------L-----HGSKILVTTRN 279 (515)
Q Consensus 217 ~~~~~~~-~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~------~-----~gs~IivTTR~ 279 (515)
....... .....+ +. ....=-|+||++.......-..|...+..+ . ...+||.||..
T Consensus 75 ~~~~~~~~~~~~G~---l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 75 KGAFTGARSDKKGL---LE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSSTTTSSEBEHH---HH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccCCc---ee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1110110 000011 11 123346788999776654444555555321 1 14678888874
No 213
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.55 E-value=0.012 Score=53.93 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhh-cccc---eeeEEEeCCcccHHHHHHHHHHHh----cCCCCCcccHHHHHHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVK-RNFE---KVIWVCVSDTFEEIRVAKAIIEGL----GESASSLSEFQSLMSHIH 234 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~---~~~wv~~~~~~~~~~~~~~il~~l----~~~~~~~~~~~~l~~~l~ 234 (515)
||+|.|.+|+||||+|+.+.. ... .... ....++...-......... -... ....+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999998887 333 2222 1233333322222222111 1111 111234566777777777
Q ss_pred HHhcCCcEEE
Q 040597 235 RSIEGKKFFL 244 (515)
Q Consensus 235 ~~L~~kr~Ll 244 (515)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666443
No 214
>PRK07667 uridine kinase; Provisional
Probab=96.55 E-value=0.0059 Score=55.88 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.+.+.+... .+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~---~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKH---KENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhc---CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666544 34558999999999999999998887
No 215
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0089 Score=62.02 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=60.2
Q ss_pred CccccccchHHHHHHHHhccCC-------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.++=|.++.+.++.+++..-.. +-.+++=|.++|++|.|||.||+.+.+. .. +-++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch-----
Confidence 3455677777777777654211 1145677899999999999999999984 33 233444432
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWD 251 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 251 (515)
+|+..+.+. ..+.+.+.+.+.-..-++++++|+++-
T Consensus 258 ---eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233333222 223334444444567899999999853
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.009 Score=64.80 Aligned_cols=153 Identities=14% Similarity=0.182 Sum_probs=84.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccc------eeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFE------KVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~------~~~wv~~~~~~~~~~ 207 (515)
..++||++|++++++-|..... +. -.++|.+|+|||++|.-++. ++.. .-+ .++=++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NN--PvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD--------- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NN--PVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLD--------- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CC--CeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEec---------
Confidence 3589999999999999986532 22 24689999999999977765 3321 111 111111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCC---------CcccccchhhhcccCCCCcEEEEEc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDG---------DYNKWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTT 277 (515)
+..-+.+. .-..+.++-...+.+.+ +.++.+|++|.++.- ..+.-+.+++.|..+. -..|=.||
T Consensus 234 ----~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 234 ----LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred ----HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 11111111 11123333333333333 345899999998541 0112233555554432 22355666
Q ss_pred ccHHH--H----hhhCCcceeeccCCChhhhHHHHHHh
Q 040597 278 RNESV--A----RMMGSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 278 R~~~v--~----~~~~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
-++-- . ..-...+.+.+...+.+++..+++..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 55421 1 11123678889999999988887643
No 217
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.51 E-value=0.017 Score=50.02 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=57.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
-.+++|+|..|.|||||++.+.... ....+.+|+.-.. .++.- ++.+.-+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999988632 2233444442100 00000 00112222233345555667
Q ss_pred cEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHhh
Q 040597 241 KFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVARM 285 (515)
Q Consensus 241 r~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 285 (515)
+-++++|+.-. .|......+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77889998632 2333344454444433 2458888877655543
No 218
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.45 E-value=0.018 Score=56.90 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSE 225 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 225 (515)
..-.++.|+|.+|+|||+|+..++....... .-..++|++....++..++ .++.+.++.... ...+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 4568999999999999999988764222211 1135789998887777653 344554433211 1112
Q ss_pred HHHH---HHHHHHHh-cCCcEEEEeccc
Q 040597 226 FQSL---MSHIHRSI-EGKKFFLLLDDV 249 (515)
Q Consensus 226 ~~~l---~~~l~~~L-~~kr~LlVLDdv 249 (515)
.+++ ...+...+ ..+--|||+|.+
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECc
Confidence 2332 23333333 334568899987
No 219
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.44 E-value=0.0082 Score=53.30 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=62.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC--cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
-.+++|.|..|.|||||.+.++.. .....+.+++.-.. ..+.....+ ..++.- .+.+.-+...-.+...+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 358999999999999999999863 22334555543211 111111111 111110 012222333334555566
Q ss_pred CCcEEEEecccCC-CCcccccchhhhcccC-CCCcEEEEEcccHHHHhh
Q 040597 239 GKKFFLLLDDVWD-GDYNKWEPFFFCVKNG-LHGSKILVTTRNESVARM 285 (515)
Q Consensus 239 ~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 285 (515)
.++-++++|+.-. .|......+...+... ..|..||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6778889998633 2333334444444322 236678888888764443
No 220
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.43 E-value=0.013 Score=57.35 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=70.5
Q ss_pred cccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcch-hhhcccceee-E---EEeCCcc---------c
Q 040597 139 SGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNND-EVKRNFEKVI-W---VCVSDTF---------E 204 (515)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~-w---v~~~~~~---------~ 204 (515)
+|..+..--++.|+ ++....|.+.|.+|.|||-||-...=.+ ..+..|..++ . +.+.++. .
T Consensus 228 prn~eQ~~ALdlLl-----d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 228 PRNAEQRVALDLLL-----DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred cccHHHHHHHHHhc-----CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 35555555667777 4578999999999999999995543221 2234444322 1 2233211 1
Q ss_pred HHHHHHHHHHHh---cCCCCCcccHHHHHHHH---------HHHhcCC---cEEEEecccCCCCcccccchhhhcccCCC
Q 040597 205 EIRVAKAIIEGL---GESASSLSEFQSLMSHI---------HRSIEGK---KFFLLLDDVWDGDYNKWEPFFFCVKNGLH 269 (515)
Q Consensus 205 ~~~~~~~il~~l---~~~~~~~~~~~~l~~~l---------~~~L~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 269 (515)
+.-.++.|...+ ...... ..+.+...+ ..+++++ +-++|+|.+.+-.. .+++..+...+.
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhccC
Confidence 112233333322 111111 111121111 1223343 45899999966554 345555666788
Q ss_pred CcEEEEEcccH
Q 040597 270 GSKILVTTRNE 280 (515)
Q Consensus 270 gs~IivTTR~~ 280 (515)
||||+.|--..
T Consensus 378 GsKIVl~gd~a 388 (436)
T COG1875 378 GSKIVLTGDPA 388 (436)
T ss_pred CCEEEEcCCHH
Confidence 99999887543
No 221
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.021 Score=56.47 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLG 217 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 217 (515)
+.-.++-|+|.+|+|||+++.+++....... .=..++||+....|+..++. +++..++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 4567889999999999999988865322211 11268999998888877654 3444443
No 222
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.42 E-value=0.014 Score=54.65 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=39.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhc-cc-ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKR-NF-EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
+|+|.|..|+||||+|+.+.. .+.. .. ..+..++...-+.....+......-....+...+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999998886 2321 11 23445555543333222222211101112344455666665555544
No 223
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.42 E-value=0.014 Score=57.85 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcc----cceeeEEEeCCcccHHHHHHHHHHHhcCCCC------------C
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAKAIIEGLGESAS------------S 222 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 222 (515)
+...++-|+|++|+|||++|.+++........ =..++||+....|++.++.+ +++.++.... +
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCC
Confidence 45678999999999999999888753211111 13689999998888766543 3444432211 0
Q ss_pred cccHHHHHHHHHHHhcC--CcEEEEeccc
Q 040597 223 LSEFQSLMSHIHRSIEG--KKFFLLLDDV 249 (515)
Q Consensus 223 ~~~~~~l~~~l~~~L~~--kr~LlVLDdv 249 (515)
......+...+...+.. +--|||+|.+
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 01112233444444433 3348888887
No 224
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.40 E-value=0.015 Score=52.33 Aligned_cols=113 Identities=19% Similarity=0.088 Sum_probs=60.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE------eCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC------VSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIH 234 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~ 234 (515)
-.+++|+|+.|+|||||.+.+..- .....+.+++. +.+.. ..+.-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~~g~~i~~~~q~~------------------~LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ---LIPNGDNDEWDGITPVYKPQYI------------------DLSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC---CCCCCcEEEECCEEEEEEcccC------------------CCCHHHHHHHHHH
Confidence 458999999999999999988763 12223333321 11111 0222223333455
Q ss_pred HHhcCCcEEEEecccCC-CCcccccchhhhcccC-CC-CcEEEEEcccHHHHhhhCCcceeecc
Q 040597 235 RSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNG-LH-GSKILVTTRNESVARMMGSTNIIFIE 295 (515)
Q Consensus 235 ~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v~~~~~~~~~~~l~ 295 (515)
..+..++-+++||.--. .|......+...+... .. +..||++|.+......++. .++.+.
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d-~i~~l~ 146 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD-RIHVFE 146 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC-EEEEEc
Confidence 55666778899998632 2222233333344321 12 2568888887665554332 344444
No 225
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.39 E-value=0.031 Score=51.80 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhcCCcEEEEecccC-CCCcccccchhhhccc--CCCCcEEEEEcccHHHHhhhC
Q 040597 224 SEFQSLMSHIHRSIEGKKFFLLLDDVW-DGDYNKWEPFFFCVKN--GLHGSKILVTTRNESVARMMG 287 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~~kr~LlVLDdvw-~~~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~ 287 (515)
+.-++..-.+.+.|...+-+|+-|.-- +-|...-+.+...+.. ...|..||+.|.++.++..+.
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 334445556777788888889999641 1122222334444432 234778999999999998653
No 226
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.032 Score=57.35 Aligned_cols=25 Identities=48% Similarity=0.492 Sum_probs=21.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+.+|.++|.+|+||||+|.+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998876665
No 227
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.019 Score=55.21 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH-hc---C-CCCCcccHHHHHHH
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG-LG---E-SASSLSEFQSLMSH 232 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l~---~-~~~~~~~~~~l~~~ 232 (515)
-+.-+++=|+|+.|+||||+|.+++-. ....-..++|++....+++..+.. +... +. . ..........+.+.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 356688899999999999999877652 444445789999999898876543 3332 21 1 12222223334444
Q ss_pred HHHHhcCCcEEEEeccc
Q 040597 233 IHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdv 249 (515)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 54444445679999998
No 228
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.37 E-value=0.0058 Score=60.39 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..+..+.|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999984
No 229
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.37 E-value=0.016 Score=54.52 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.....+++|.|+.|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998886
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=96.36 E-value=0.035 Score=55.16 Aligned_cols=89 Identities=25% Similarity=0.229 Sum_probs=47.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccceeeEEEeCCccc--HHHHHHHHHHHhcCCCC---CcccHHH-HHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSDTFE--EIRVAKAIIEGLGESAS---SLSEFQS-LMSH 232 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~---~~~~~~~-l~~~ 232 (515)
.+.+|.++|++|+||||++.+++.. ... .+ .++.++. +.+. ...-++.....++.+.. ...+... +.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4689999999999999988888763 332 23 2334432 2222 23344555566554311 1112222 2233
Q ss_pred HHHHhcCCcEEEEecccCCC
Q 040597 233 IHRSIEGKKFFLLLDDVWDG 252 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw~~ 252 (515)
+........=+|++|-.-..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33222222238889987443
No 231
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.36 E-value=0.026 Score=50.24 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=60.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEE-------EeCCcc--cHHHHHHHHHHHhcCCCCCcccHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-------CVSDTF--EEIRVAKAIIEGLGESASSLSEFQSLM 230 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~l~ 230 (515)
+-.+++|+|..|.|||||++.+..-.. ...+.+++ .+.+.. ....+...+... .....+.-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 345899999999999999999986321 11121211 112221 111222222210 112222223333
Q ss_pred HHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHh
Q 040597 231 SHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVAR 284 (515)
Q Consensus 231 ~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 284 (515)
-.+...+..++=+++||+--. .|......+...+... +..||++|.+.....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 445555666777888997632 2222333344444432 356888888766543
No 232
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.35 E-value=0.0062 Score=56.00 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=56.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI-RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
.+|.|+|+.|+||||++..+... ...+....++. +.++.... .-...++.+- ....+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----ccCCCccCHHHHHHHHhcCC
Confidence 47899999999999999887762 33333333332 22211100 0000011100 00011223455666767666
Q ss_pred cEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHH
Q 040597 241 KFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVA 283 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 283 (515)
+=++++|.+.+ .+....... ....|..++.|+....+.
T Consensus 75 pd~ii~gEird--~e~~~~~l~---~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALT---AAETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHH---HHHcCCEEEEEecCCcHH
Confidence 77999999943 233333222 223466677777655443
No 233
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.35 E-value=0.034 Score=52.70 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
+.-.++.|.|.+|+|||++|.++... .. ..-..++||+... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 45689999999999999999876542 12 3345678888765 34444444
No 234
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.34 E-value=0.019 Score=51.51 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=64.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcch-hh--hcc---cc--eeeEEEeCCcccHHHHHHHHHHHhcCCCC-------Ccc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNND-EV--KRN---FE--KVIWVCVSDTFEEIRVAKAIIEGLGESAS-------SLS 224 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~--~~~---F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------~~~ 224 (515)
.-.+++|+|+.|+|||||.+.+..+. .+ ... |. .+.|+ .+ .+.+..++.... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999885320 11 101 10 12222 11 345555553311 111
Q ss_pred cHHHHHHHHHHHhcCC--cEEEEecccCC-CCcccccchhhhcccC-CCCcEEEEEcccHHHHhhhCCcceeec
Q 040597 225 EFQSLMSHIHRSIEGK--KFFLLLDDVWD-GDYNKWEPFFFCVKNG-LHGSKILVTTRNESVARMMGSTNIIFI 294 (515)
Q Consensus 225 ~~~~l~~~l~~~L~~k--r~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~l 294 (515)
.-+...-.+...+..+ +=+++||+.-. .+......+...+... ..|..||++|.+...... ...++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1222233344455555 67888898632 2223334444444321 246678899988776543 3344444
No 235
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.33 E-value=0.028 Score=60.10 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=38.2
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a---~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA---RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh---CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3578999999999888776442 23345789999999999999999873
No 236
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.11 Score=50.86 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=79.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhh------h--cccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEV------K--RNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLM 230 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~--~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~ 230 (515)
.-..+..++|..|.||+++|..+.+.... . .+-+-..++.... .....+++.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir 75 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFL 75 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHH
Confidence 34678889999999999999888763100 1 1111122221101 011122222
Q ss_pred HHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcc-cHHHHhh-hCCcceeeccCCChhhhH
Q 040597 231 SHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTR-NESVARM-MGSTNIIFIEQLTEEECW 303 (515)
Q Consensus 231 ~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~-~~~~~~~~l~~L~~~~a~ 303 (515)
+.+.+.- .+++=++|+|++...+....+.+...+...+.++.+|++|. ...+... ......+++.++++++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 2222210 24677889999977776677778888877667777776554 3444433 344778999999999988
Q ss_pred HHHHHh
Q 040597 304 SLFKRL 309 (515)
Q Consensus 304 ~Lf~~~ 309 (515)
..+...
T Consensus 156 ~~l~~~ 161 (299)
T PRK07132 156 AKLLSK 161 (299)
T ss_pred HHHHHc
Confidence 777653
No 237
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.33 E-value=0.023 Score=56.62 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=55.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSE 225 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 225 (515)
..-.++-|+|.+|+|||+||..++-...... .-..++|++....|++.++. +|++.++.... ...+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCC
Confidence 4567888999999999999987764222111 11268999999998887754 55665543321 1122
Q ss_pred HHHHHHHHH---HHh-cCCcEEEEeccc
Q 040597 226 FQSLMSHIH---RSI-EGKKFFLLLDDV 249 (515)
Q Consensus 226 ~~~l~~~l~---~~L-~~kr~LlVLDdv 249 (515)
.+.+...+. ..+ ..+--|||+|.+
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 333332222 223 345568899987
No 238
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.33 E-value=0.0041 Score=55.53 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=43.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHHhcC
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSL---SEFQSLMSHIHRSIEG 239 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~L~~ 239 (515)
++.|.|.+|+||||+|..+... .. ..+.++.-...++ .+..+.|.......+..- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999988752 11 1234444444333 345555544443332211 1111233444443333
Q ss_pred CcEEEEeccc
Q 040597 240 KKFFLLLDDV 249 (515)
Q Consensus 240 kr~LlVLDdv 249 (515)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888986
No 239
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.30 E-value=0.024 Score=53.35 Aligned_cols=179 Identities=11% Similarity=0.124 Sum_probs=98.6
Q ss_pred cccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc----hhhhcccceeeEEEeCCc----------
Q 040597 137 VFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN----DEVKRNFEKVIWVCVSDT---------- 202 (515)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~~~~~---------- 202 (515)
+.+.++...++..... ..+.+-..++|+.|.||-|.+..+.+. .--+-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~-----~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS-----TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred cccHHHHHHHHHHhcc-----cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 4455555555554443 345778899999999999988655442 111122333445443322
Q ss_pred c-----------cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC-CcE-EEEecccCCCCcccccchhhhcccCCC
Q 040597 203 F-----------EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG-KKF-FLLLDDVWDGDYNKWEPFFFCVKNGLH 269 (515)
Q Consensus 203 ~-----------~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~-kr~-LlVLDdvw~~~~~~~~~l~~~l~~~~~ 269 (515)
. .-+-+.++|++.+....+-. ..+ +.| ++|+-.+++-..+.-..++.....-.+
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 11233444444433221100 012 233 566666655444445556666665556
Q ss_pred CcEEEEEccc--HHHHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 270 GSKILVTTRN--ESVARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 270 gs~IivTTR~--~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
.+|+|+..-+ +-+...-...-.+.+...+++|....+.+.+-..+- . --.+++.+|+++++|+-
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l--~--lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL--Q--LPKELLKRIAEKSNRNL 222 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc--c--CcHHHHHHHHHHhcccH
Confidence 6777764322 112222122456789999999999999887744331 1 12678999999998864
No 240
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.05 Score=58.83 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=97.5
Q ss_pred ccccccc---hHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 136 EVFSGVD---EKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 136 ~~vGr~~---~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
++.|-++ |++++++.|..+.. ...-++=+.|+|++|.|||-||+.++-... +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH------
Confidence 5667654 66677777764321 123467789999999999999999997422 345555542
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc---------------ccccchhhhcccCCCCc-E
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY---------------NKWEPFFFCVKNGLHGS-K 272 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~---------------~~~~~l~~~l~~~~~gs-~ 272 (515)
+.++.+.... .....+ .....=.+.++++.+|+++.... ..++++..-+....... .
T Consensus 379 --EFvE~~~g~~--asrvr~---lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVGVG--ASRVRD---LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhcccc--hHHHHH---HHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 1222222211 111111 11122245688888888743211 11223333233222222 2
Q ss_pred E-EEEcccHHHHhh--h--C-CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 273 I-LVTTRNESVARM--M--G-STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 273 I-ivTTR~~~v~~~--~--~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
| |-+|....+... + + -...+.++.-+...-.++|.-++-.-. ...+..++.+ |+...-|++=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 3 334544443322 1 1 156778888888888888888774322 1134445555 777777777554
No 241
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0082 Score=55.04 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=43.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL--GESASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l--~~~~~~~~~~~~l~~~l~~~ 236 (515)
..+.+|+|.|.+|+||||+|+.++. .++..+ +.-++...-+...+ ........ .-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999998887 333331 12222111111000 00011111 11233456677778888888
Q ss_pred hcCCc
Q 040597 237 IEGKK 241 (515)
Q Consensus 237 L~~kr 241 (515)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 242
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.017 Score=58.06 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=49.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.....+...+...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346999999999999999998887321121223455665333 123344555555555544322222223333333 234
Q ss_pred CCcEEEEecccC
Q 040597 239 GKKFFLLLDDVW 250 (515)
Q Consensus 239 ~kr~LlVLDdvw 250 (515)
++ =+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456689874
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.031 Score=56.60 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhc--ccceeeEEEeCCcccH--HHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR--NFEKVIWVCVSDTFEE--IRVAKAIIEGLGESASSLSEFQSLMSHIHR 235 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~l~~~l~~ 235 (515)
...+|.++|+.|+||||.+.+++....... +-..+..+++.. +.. ..-++...+.++.+.........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 467999999999999999988876322211 122344555443 332 233555555555443223344445444444
Q ss_pred HhcCCcEEEEecccCC
Q 040597 236 SIEGKKFFLLLDDVWD 251 (515)
Q Consensus 236 ~L~~kr~LlVLDdvw~ 251 (515)
. .+.-+|++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888998844
No 244
>PRK05439 pantothenate kinase; Provisional
Probab=96.26 E-value=0.026 Score=55.22 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=50.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc--cceeeEEEeCCcccHHHHHHHHHHHhc-CCC
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEEIRVAKAIIEGLG-ESA 220 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~il~~l~-~~~ 220 (515)
.....+.++... ....+-+|+|.|.+|+||||+|+.+.. ..... -..+.-++..+-+.....+..- ..+. ...
T Consensus 70 ~~~~~~~fl~~~-~~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~ 145 (311)
T PRK05439 70 LQAALEQFLGKN-GQKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGF 145 (311)
T ss_pred HHHHHHHHhccc-CCCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCC
Confidence 334444444321 145678999999999999999988876 23222 1234445544433222222210 0011 122
Q ss_pred CCcccHHHHHHHHHHHhcCCc
Q 040597 221 SSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 221 ~~~~~~~~l~~~l~~~L~~kr 241 (515)
++.-+.+.+...|.....++.
T Consensus 146 Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 146 PESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred cccccHHHHHHHHHHHHcCCC
Confidence 344566667777776666654
No 245
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.26 E-value=0.003 Score=56.46 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=28.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhh-cccceeeEEEeCC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCVSD 201 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~ 201 (515)
+..++.+.|+.|+|||.||+.+.+ .+. ......+-++++.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 356889999999999999998887 333 3344455555554
No 246
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.26 E-value=0.035 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999987765
No 247
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.25 E-value=0.023 Score=55.22 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=43.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhccc--ceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF--EKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 236 (515)
..+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-......+...-..-....++..+...+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4678999999999999999987754 222111 124445544433222222221100011223445666676666666
Q ss_pred hcCC
Q 040597 237 IEGK 240 (515)
Q Consensus 237 L~~k 240 (515)
-.++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 248
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0051 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|.|.|++|+||||+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999873
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.055 Score=52.30 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=47.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH--HHHHHHHHHHhcCCC---CCcccH-HHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE--IRVAKAIIEGLGESA---SSLSEF-QSLMSH 232 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~---~~~~~~-~~l~~~ 232 (515)
.+.+++.++|++|+||||++.+++.. ....-..+.+++... +.. ..-+.......+.+. ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45689999999999999999888763 333323455665442 322 222333334433221 111122 222233
Q ss_pred HHHHhcCCcEEEEecccC
Q 040597 233 IHRSIEGKKFFLLLDDVW 250 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw 250 (515)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334445578888763
No 250
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.17 E-value=0.018 Score=51.72 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=58.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC--cccHHHHHHHHHHHhcC--CCCC----------cccH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD--TFEEIRVAKAIIEGLGE--SASS----------LSEF 226 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~il~~l~~--~~~~----------~~~~ 226 (515)
-.+++|+|..|.|||||.+.+..- .....+.++++-.. ........ ..++. +.+. .+.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 358999999999999999998863 12223333332110 01111111 11110 0000 1111
Q ss_pred HHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhccc-CCCCcEEEEEcccHHHHh
Q 040597 227 QSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKN-GLHGSKILVTTRNESVAR 284 (515)
Q Consensus 227 ~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~ 284 (515)
+...-.+...+..++=+++||+... -|......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222334455556667889998733 222233334444432 123667888888876654
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.17 E-value=0.043 Score=49.11 Aligned_cols=21 Identities=57% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 252
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.04 Score=55.10 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-ccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
.+.++++|+|+.|+||||++..+... ....-..+.+++.... .....-++.....++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999888763 2222234666665432 12244555555555543222234455555454332
Q ss_pred -cCCcEEEEecccCC
Q 040597 238 -EGKKFFLLLDDVWD 251 (515)
Q Consensus 238 -~~kr~LlVLDdvw~ 251 (515)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13446788887743
No 253
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.16 E-value=0.035 Score=52.28 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=31.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.-.++.|.|.+|+||||+|.+++.. -.+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3459999999999999998666543 22333 3456676433 445555554
No 254
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.15 E-value=0.0042 Score=52.39 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988873
No 255
>PTZ00301 uridine kinase; Provisional
Probab=96.12 E-value=0.0083 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999998876
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.012 Score=62.10 Aligned_cols=73 Identities=23% Similarity=0.161 Sum_probs=46.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc--cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
...-|.|.|+.|+|||+||+.+++... +...-.+.+|+++.-. ....+++ .+...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345788999999999999999998533 4455556677766521 1111111 1122333445
Q ss_pred cCCcEEEEecccC
Q 040597 238 EGKKFFLLLDDVW 250 (515)
Q Consensus 238 ~~kr~LlVLDdvw 250 (515)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6688999999984
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.022 Score=57.79 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++.++|++|+||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988876
No 258
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.015 Score=55.83 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=48.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhh--cccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
.++|.++|++|.|||+|++.+++...++ ..|....-+-++. .. +.+...... ...+..+.+.+++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hs----LFSKWFsES--gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HS----LFSKWFSES--GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hH----HHHHHHhhh--hhHHHHHHHHHHHHHh
Confidence 4789999999999999999999864332 3333333333322 22 223322221 1245556677777776
Q ss_pred CCc--EEEEecccC
Q 040597 239 GKK--FFLLLDDVW 250 (515)
Q Consensus 239 ~kr--~LlVLDdvw 250 (515)
++. .++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 655 355678883
No 259
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.06 E-value=0.0061 Score=63.72 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=38.7
Q ss_pred ccccccchHHHHHHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+++|.++.++++++.|..... -...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999832110 034557999999999999999998886
No 260
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.015 Score=54.08 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=58.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHHH-
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS---LSEFQSLMSHIHRS- 236 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~~~- 236 (515)
.+++.|+|+.|.||||+.+.+...... .+ .-.|+.... .. ...+.++...+.....- .+....-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~--~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AH--IGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-Hh--CCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999988742111 11 111222111 00 01111222222222111 11111111222222
Q ss_pred -hcCCcEEEEecccCCCCc-cccc----chhhhcccC-CCCcEEEEEcccHHHHhhh
Q 040597 237 -IEGKKFFLLLDDVWDGDY-NKWE----PFFFCVKNG-LHGSKILVTTRNESVARMM 286 (515)
Q Consensus 237 -L~~kr~LlVLDdvw~~~~-~~~~----~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 286 (515)
+..++-|++||..-.... .+.. .+...+... ..+..+|+||.+..++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 246789999999854321 1111 122222222 2345799999998877654
No 261
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.05 E-value=0.016 Score=57.77 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=70.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.++... ...-...+.|++... +...+-..++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a---~~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~-~~~~~~~~lfg~ 80 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA---PLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NENLLDSELFGH 80 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCC-CHHHHHHHHccc
Confidence 58899888888888776542 233467899999999999999888521 111112334455542 222222222211
Q ss_pred hcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEccc
Q 040597 216 LGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTTRN 279 (515)
Q Consensus 216 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~ 279 (515)
-......... .....+. ....=.|+||||..........+...+..+. ...+||.||..
T Consensus 81 ~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 81 EAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1000000000 0000111 1223357899997766555666666654321 13578887754
No 262
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.062 Score=56.02 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=82.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
+.=|.+||++|+|||-||+.|++ +.+-+| +++-.+ +++...-+. ....+...+++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVGE-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVGE-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhhh-----HHHHHHHHHHHhhcCC
Confidence 45688999999999999999999 444455 455443 122211111 1122223333333567
Q ss_pred cEEEEecccCCC-----Ccccc------cchhhhccc--CCCCcEEEEEcccHHHHhh--hC---CcceeeccCCChhhh
Q 040597 241 KFFLLLDDVWDG-----DYNKW------EPFFFCVKN--GLHGSKILVTTRNESVARM--MG---STNIIFIEQLTEEEC 302 (515)
Q Consensus 241 r~LlVLDdvw~~-----~~~~~------~~l~~~l~~--~~~gs~IivTTR~~~v~~~--~~---~~~~~~l~~L~~~~a 302 (515)
+|+|.||.++.. +...| ++|..-+.. ...|--||-.|-.+++... +. -...+.++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998541 11112 223322322 2235555555544433221 11 155777888888888
Q ss_pred HHHHHHhhcCCCCC-CCccchHHHHHHHHHHcCCCC
Q 040597 303 WSLFKRLAFFDRSF-EDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 303 ~~Lf~~~~~~~~~~-~~~~~~~~~~~~I~~~c~glP 337 (515)
..+++...-....+ ...-.+.++++. .+|.|..
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888777432221 122244444332 3566654
No 263
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.05 E-value=0.0077 Score=58.16 Aligned_cols=94 Identities=29% Similarity=0.349 Sum_probs=47.8
Q ss_pred HHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH-hcCCCCCc
Q 040597 145 NELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG-LGESASSL 223 (515)
Q Consensus 145 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l~~~~~~~ 223 (515)
..+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.+...+...+. .+++. +.......
T Consensus 23 ~~ll~~l~~~------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 23 SYLLDLLLSN------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHC------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTEE
T ss_pred HHHHHHHHHc------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCC
Confidence 4566666633 35678999999999999998876311 1111 13344555544443332 22221 11110000
Q ss_pred ccHHHHHHHHHHHhcCCcEEEEecccCCCCcccc
Q 040597 224 SEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKW 257 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~ 257 (515)
..--.+|++++.+||+.-...+.|
T Consensus 94 ----------~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 94 ----------YGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp ----------EEEESSSEEEEEEETTT-S---TT
T ss_pred ----------CCCCCCcEEEEEecccCCCCCCCC
Confidence 000146889999999955443344
No 264
>PTZ00035 Rad51 protein; Provisional
Probab=96.04 E-value=0.049 Score=54.31 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhh----cccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------Cccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK----RNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSE 225 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 225 (515)
+.-.++.|+|.+|+|||||+..++-..... ..=..++|++....|++.++ .++.+.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 456899999999999999998876432211 01235679998887777663 344555443211 1122
Q ss_pred HHHHHHHH---HHHh-cCCcEEEEeccc
Q 040597 226 FQSLMSHI---HRSI-EGKKFFLLLDDV 249 (515)
Q Consensus 226 ~~~l~~~l---~~~L-~~kr~LlVLDdv 249 (515)
.+++...+ ...+ ..+--|||+|.+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 23333332 2233 344568999987
No 265
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.02 E-value=0.024 Score=56.52 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 137 VFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a---~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA---PLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHH
Confidence 3566666777776665432 2334578999999999999999886
No 266
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.02 E-value=0.036 Score=56.94 Aligned_cols=24 Identities=42% Similarity=0.387 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.++.++|.+|+||||+|.+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999977765
No 267
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.02 E-value=0.022 Score=62.90 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=72.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH-HH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA-II 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-il 213 (515)
..++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... ..-...+.+++..-. . ..+.. ++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a---~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA---QSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-A-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh---CCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-h-hHhhhhhc
Confidence 368999988888877665432 2335688999999999999999987321 111233444544321 1 22211 11
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEcccH
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTTRNE 280 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 280 (515)
.......... . ......+ -....=.|+||+|..........+...+..+. .+.+||.||...
T Consensus 449 g~~~~~~~g~-~-~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA-S-AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc-c-cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111000000 0 0001111 11234568999997766555566666664321 245788888643
No 268
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.00 E-value=0.067 Score=51.75 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=36.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 216 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 216 (515)
.-.++.|.|.+|+||||++.++.... ...+=..++|+++..+ ..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 34588899999999999998887632 2222346888887663 445555555443
No 269
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.019 Score=51.48 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=61.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC--CCC---C---------cccH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE--SAS---S---------LSEF 226 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~---~---------~~~~ 226 (515)
-.+++|+|..|.|||||.+.++... ....+.+++.-....... ..+-..++. +.. . .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999987631 223344443211100000 011111110 000 0 1111
Q ss_pred HHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccC-CCCcEEEEEcccHHHHhh
Q 040597 227 QSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNG-LHGSKILVTTRNESVARM 285 (515)
Q Consensus 227 ~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~ 285 (515)
+...-.+...+..++=++++|+.-. -|......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2222345556667788999998733 2222333444444321 236678999888765554
No 270
>PRK08233 hypothetical protein; Provisional
Probab=95.99 E-value=0.0058 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998886
No 271
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.99 E-value=0.017 Score=53.32 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=62.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHHHh
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSE---FQSLMSHIHRSI 237 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~---~~~l~~~l~~~L 237 (515)
..++.|.|+.|.||||+.+.+.... +-.+ .-++|.+.. ....+...|+..++........ ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886532 1111 112222211 1112333444444333211111 111111122222
Q ss_pred --cCCcEEEEecccCCCC-ccc----ccchhhhcccCCCCcEEEEEcccHHHHhhhCC
Q 040597 238 --EGKKFFLLLDDVWDGD-YNK----WEPFFFCVKNGLHGSKILVTTRNESVARMMGS 288 (515)
Q Consensus 238 --~~kr~LlVLDdvw~~~-~~~----~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~ 288 (515)
..++-|+++|..-... ..+ ...+...+.. .|+.+|++|.+..++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3567899999974321 111 1122223322 27789999999888876543
No 272
>PHA02244 ATPase-like protein
Probab=95.98 E-value=0.027 Score=56.08 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-|.|+|++|+|||+||+.++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 273
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.017 Score=49.95 Aligned_cols=44 Identities=32% Similarity=0.391 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES 219 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 219 (515)
+|.|.|++|+||||+|+.+.++.-.+ | + +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999988742111 1 1 2335777787776654
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.97 E-value=0.04 Score=51.70 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC---------CcccHHHH--HHHHHHHhcCCCCC--c--
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS---------DTFEEIRV--AKAIIEGLGESASS--L-- 223 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~---------~~~~~~~~--~~~il~~l~~~~~~--~-- 223 (515)
..+.+|.++||+|+||||..+.++.+ +...+....-|++. -..++++. +++..++.+..+.. .
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 45678889999999999999998874 33444333333322 22344432 46667666544332 1
Q ss_pred -----ccHHHHHHHHHHHhcCCcEEEEecc
Q 040597 224 -----SEFQSLMSHIHRSIEGKKFFLLLDD 248 (515)
Q Consensus 224 -----~~~~~l~~~l~~~L~~kr~LlVLDd 248 (515)
...++.+..+.+.-..-.|.| +|-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~l-iDT 123 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVL-IDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEE-EcC
Confidence 234555555555444444544 443
No 275
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.029 Score=57.45 Aligned_cols=49 Identities=29% Similarity=0.219 Sum_probs=36.1
Q ss_pred cccccc---chHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGV---DEKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~---~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
++-|-+ .|+++++++|..... +..-++-|.++|++|.|||-||+.++-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 455654 477888888864321 1234677999999999999999999874
No 276
>PRK06547 hypothetical protein; Provisional
Probab=95.92 E-value=0.011 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998863
No 277
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.92 E-value=0.0069 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|.+|+||||||+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998887
No 278
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.89 E-value=0.033 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.354 Sum_probs=17.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999998876
No 279
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.89 E-value=0.027 Score=50.55 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.88 E-value=0.062 Score=54.27 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=50.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC-----cccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS-----LSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~l~~~l 233 (515)
..-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ ..-...++..... ..+.+.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34569999999999999999988763 3333346778876543 2222 2223444432221 23344444444
Q ss_pred HHHhcCCcEEEEecccC
Q 040597 234 HRSIEGKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~~kr~LlVLDdvw 250 (515)
. ..+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 3 3466789999983
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.048 Score=56.19 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=47.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
.+++.++|++|+||||++.++.........-..+..|+....- ....-++.....++.+.....+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4689999999999999998776532211223456667654321 112223333333443322223334444555432 2
Q ss_pred CcEEEEecccC
Q 040597 240 KKFFLLLDDVW 250 (515)
Q Consensus 240 kr~LlVLDdvw 250 (515)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34578889763
No 282
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.83 E-value=0.0078 Score=55.77 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+...+|+|+|++|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998886
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.83 E-value=0.0066 Score=45.26 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 284
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.83 E-value=0.015 Score=50.83 Aligned_cols=36 Identities=39% Similarity=0.296 Sum_probs=27.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
..+|-|+|.+|+||||||+.+.+ +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36889999999999999999998 4555444555554
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.032 Score=58.13 Aligned_cols=89 Identities=21% Similarity=0.166 Sum_probs=45.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...+++|+|++|+||||++.++............+..++... .......+......++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 357999999999999999988776211111123455555432 11122223222233332222222333444444332 3
Q ss_pred CCcEEEEecccC
Q 040597 239 GKKFFLLLDDVW 250 (515)
Q Consensus 239 ~kr~LlVLDdvw 250 (515)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34578888873
No 286
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.81 E-value=0.0099 Score=65.77 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---Cc----ccHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---SL----SEFQSLMSH 232 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~----~~~~~l~~~ 232 (515)
+..++.|+|+.|.||||+.+.+...... ...-++|.+..... ...+.++...++.... .. .....+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3478999999999999999888653100 11111222221100 0011111111111100 00 111222222
Q ss_pred HHHHhcCCcEEEEecccCCCC-cccccchh-hhccc-CCCCcEEEEEcccHHHHhhhCCcceeeccCCChh-hhHHHHHH
Q 040597 233 IHRSIEGKKFFLLLDDVWDGD-YNKWEPFF-FCVKN-GLHGSKILVTTRNESVARMMGSTNIIFIEQLTEE-ECWSLFKR 308 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw~~~-~~~~~~l~-~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~ 308 (515)
+. .+ ..+-|++||..-... ......+. ..+.. ...|+.+|+||....+.........+.-..+..+ +......+
T Consensus 397 l~-~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Yk 474 (771)
T TIGR01069 397 LS-KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYK 474 (771)
T ss_pred HH-hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEE
Confidence 22 12 478999999985432 22222232 11211 1247889999999877544322111111111111 11110011
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh---hHHhhhh
Q 040597 309 LAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK---EWQRILD 357 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~---~w~~~l~ 357 (515)
.. .+. + -...|-.|++++ |+|-.+..-|..+... +...+++
T Consensus 475 l~--~G~----~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 518 (771)
T TIGR01069 475 LL--KGI----P-GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIE 518 (771)
T ss_pred EC--CCC----C-CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 111 0 123466677766 7888887777766544 4444443
No 287
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.80 E-value=0.031 Score=48.75 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998886
No 288
>PRK04328 hypothetical protein; Provisional
Probab=95.80 E-value=0.059 Score=51.46 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 202 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 202 (515)
+.-.++.|.|.+|+|||+||.++... .. ..-..++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 45679999999999999999887653 22 23456788887663
No 289
>PRK06762 hypothetical protein; Provisional
Probab=95.79 E-value=0.0076 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998886
No 290
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.79 E-value=0.12 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998864
No 291
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.78 E-value=0.013 Score=55.05 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-|.|.|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998876
No 292
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.78 E-value=0.016 Score=52.31 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 293
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.024 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 294
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.73 E-value=0.054 Score=50.11 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=36.2
Q ss_pred HHHHhcCCcEEEEecccCC-CCcccccchhhhccc-CCCCcEEEEEcccHHHHhhhCCcceeeccCCC
Q 040597 233 IHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKN-GLHGSKILVTTRNESVARMMGSTNIIFIEQLT 298 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~ 298 (515)
+...+..++-+++||+--. .|......+...+.. ...|..||++|.+...... ..++.++.+.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 4444556678999998632 222333444444442 2236678999888655443 5566665543
No 295
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.71 E-value=0.039 Score=54.16 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
+.-+++-|+|+.|+||||||..+.. .....-..++||+....+++. .+..++.+.. .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 4457999999999999999988876 344444568899998877653 3344443311 122334445555
Q ss_pred HHHhc-CCcEEEEeccc
Q 040597 234 HRSIE-GKKFFLLLDDV 249 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdv 249 (515)
...++ +..-++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 55554 34458999988
No 296
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.71 E-value=0.1 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 297
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.70 E-value=0.079 Score=57.81 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
+-|.|+|++|.|||++|+.+... ....| +.++.. .+. ..... .....+...+...-...+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~~----~~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DFV----EMFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----HhH----Hhhhc-----ccHHHHHHHHHHHHhcCC
Confidence 45899999999999999999873 32222 222211 111 11100 111222233333334578
Q ss_pred EEEEecccCCCCc----------ccccc-hhhh---ccc--CCCCcEEEEEcccHHHHhh-h-C---CcceeeccCCChh
Q 040597 242 FFLLLDDVWDGDY----------NKWEP-FFFC---VKN--GLHGSKILVTTRNESVARM-M-G---STNIIFIEQLTEE 300 (515)
Q Consensus 242 ~LlVLDdvw~~~~----------~~~~~-l~~~---l~~--~~~gs~IivTTR~~~v~~~-~-~---~~~~~~l~~L~~~ 300 (515)
++|++|+++.-.. ..+.. +... +.. ...+.-||.||........ . . -...+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999854210 11111 1111 221 1234445557765543322 1 1 1456778877777
Q ss_pred hhHHHHHHhh
Q 040597 301 ECWSLFKRLA 310 (515)
Q Consensus 301 ~a~~Lf~~~~ 310 (515)
+-.+++..+.
T Consensus 326 ~R~~Il~~~~ 335 (644)
T PRK10733 326 GREQILKVHM 335 (644)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.017 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 299
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.68 E-value=0.081 Score=47.00 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=62.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccee--eEEEeCCcccHHHHHHHHHHHh---cCC----CCCc----ccHHH
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKV--IWVCVSDTFEEIRVAKAIIEGL---GES----ASSL----SEFQS 228 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~il~~l---~~~----~~~~----~~~~~ 228 (515)
..|-|++..|.||||.|....-. .....+... =|+-..........+..+.-.+ +.. ..+. .....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 57788888999999999655541 222333321 1333222233344443320000 110 0011 11233
Q ss_pred HHHHHHHHhcCCc-EEEEecccCC---CCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 229 LMSHIHRSIEGKK-FFLLLDDVWD---GDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 229 l~~~l~~~L~~kr-~LlVLDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
..+..++.+...+ =|||||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3444455554444 5999999721 11223456667776666777899999975
No 300
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.23 Score=48.11 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=72.7
Q ss_pred HHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-c----------cceeeEEEeCCcccHHHHHHHHH
Q 040597 145 NELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-N----------FEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 145 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~----------F~~~~wv~~~~~~~~~~~~~~il 213 (515)
+++...+.. +.-.....++|+.|+||+++|..+........ . .+-..|+.-...
T Consensus 7 ~~L~~~i~~----~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~----------- 71 (290)
T PRK05917 7 EALIQRVRD----QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK----------- 71 (290)
T ss_pred HHHHHHHHc----CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-----------
Confidence 455555543 23466888999999999999987765211110 0 011111110000
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc-HHHHhh-h
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN-ESVARM-M 286 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~-~ 286 (515)
...-.+++.. .+.+.+ .++.=++|+|+++..+.+.++.+...+.....++.+|++|.+ ..+... .
T Consensus 72 -------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~ 143 (290)
T PRK05917 72 -------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR 143 (290)
T ss_pred -------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH
Confidence 0001233322 222222 355568899999888888899998888776667776666665 444333 3
Q ss_pred CCcceeeccCC
Q 040597 287 GSTNIIFIEQL 297 (515)
Q Consensus 287 ~~~~~~~l~~L 297 (515)
+....+.+.++
T Consensus 144 SRcq~~~~~~~ 154 (290)
T PRK05917 144 SRSLSIHIPME 154 (290)
T ss_pred hcceEEEccch
Confidence 33456666654
No 301
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.67 E-value=0.076 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|..|.|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999886
No 302
>PTZ00494 tuzin-like protein; Provisional
Probab=95.67 E-value=0.26 Score=49.95 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=101.1
Q ss_pred ccccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 131 FIDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 131 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
......++.|+.|-..+.+.|..-+ ...++++++.|.-|.||++|.+........ ..++|++... ++-++
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld--~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA--PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc--CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 3445678888888877777776543 467899999999999999999877753222 3567887764 34577
Q ss_pred HHHHHhcCCCCCc--ccHHHHHHHHHH---HhcCCcEEEEecccCCCC-cccccchhhhcccCCCCcEEEEEcccHHHHh
Q 040597 211 AIIEGLGESASSL--SEFQSLMSHIHR---SIEGKKFFLLLDDVWDGD-YNKWEPFFFCVKNGLHGSKILVTTRNESVAR 284 (515)
Q Consensus 211 ~il~~l~~~~~~~--~~~~~l~~~l~~---~L~~kr~LlVLDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 284 (515)
.|++.++.+..+. +-++-+.+.... ...++.-+||+-==.-.+ ...+++.. .|.....-|+|++----+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 8888888765432 122333333332 234555566653211010 01122211 1223334567777655444332
Q ss_pred hh---CCcceeeccCCChhhhHHHHHHhh
Q 040597 285 MM---GSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 285 ~~---~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.. ..-..|.+++++..+|.++..+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 21 224578899999999988876553
No 303
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.66 E-value=0.055 Score=55.29 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999998753
No 304
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.64 E-value=0.065 Score=49.30 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988764
No 305
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.029 Score=49.38 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=61.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc--cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
.+++|+|..|.|||||.+.+... . ....+.+++...... .... ....+..... .+.-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 68999999999999999999873 2 233455554322111 1111 1111111000 11122223334555566
Q ss_pred CcEEEEecccCC-CCcccccchhhhcccC-CCCcEEEEEcccHHHHhhh
Q 040597 240 KKFFLLLDDVWD-GDYNKWEPFFFCVKNG-LHGSKILVTTRNESVARMM 286 (515)
Q Consensus 240 kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~ 286 (515)
.+-++++|+.-. .|......+...+... ..+..+|++|.+......+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 678899998743 2222333444444321 1256788888887666553
No 306
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.092 Score=49.57 Aligned_cols=124 Identities=20% Similarity=0.256 Sum_probs=66.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchh-----hh------ccc---ceeeEEEeCC------cccHH---------------
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDE-----VK------RNF---EKVIWVCVSD------TFEEI--------------- 206 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~-----~~------~~F---~~~~wv~~~~------~~~~~--------------- 206 (515)
.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||+=.. +.++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999876211 00 001 2345553111 11111
Q ss_pred -------HHHHHHHHHhcCCC------CCcccHHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhccc-CCCCc
Q 040597 207 -------RVAKAIIEGLGESA------SSLSEFQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKN-GLHGS 271 (515)
Q Consensus 207 -------~~~~~il~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~-~~~gs 271 (515)
+...+.++.++... ...+.-+...-.|.+.|..++=|++||.--. .|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 23334444443321 1122233334456777888999999996421 121222233333332 12288
Q ss_pred EEEEEcccHHHHhh
Q 040597 272 KILVTTRNESVARM 285 (515)
Q Consensus 272 ~IivTTR~~~v~~~ 285 (515)
.||+.|-+-.....
T Consensus 191 tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 TVLMVTHDLGLVMA 204 (254)
T ss_pred EEEEEeCCcHHhHh
Confidence 89999998654443
No 307
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.58 E-value=0.026 Score=53.03 Aligned_cols=63 Identities=29% Similarity=0.297 Sum_probs=36.4
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
+..++++.+... ..+..+|+|.|+||+|||||...+.....-+.+=-.++=|+-|++++--.+
T Consensus 14 ~~~~ll~~l~~~---~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPH---TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGG---TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhh---cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 456677777654 346789999999999999999888763222222223444444555544333
No 308
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.1 Score=57.14 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..+++++|+.|+||||++.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999999888763
No 309
>PRK03839 putative kinase; Provisional
Probab=95.58 E-value=0.0093 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 310
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.02 Score=60.55 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCccccccchHHHHHHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
+.+-+|.++-.+++++++.-..- ...+-++++.+|++|+|||++|+.++. .....| +-++++.-.+..++--.=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 45678999999999998852211 134568999999999999999999987 344444 234555544443321000
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCccc----ccchhhhccc-C------------CCCcEEEE
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNK----WEPFFFCVKN-G------------LHGSKILV 275 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~----~~~l~~~l~~-~------------~~gs~Iiv 275 (515)
...-..-...+++.|++. +-.+-|+.||.|+.-.... -..+...|.. . --=|+|+.
T Consensus 485 ------RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 ------RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred ------eeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 000001123344444443 3345677888885422100 0112222210 0 01245544
Q ss_pred -EcccH--HHH-hhhCCcceeeccCCChhhhHHHHHHhh
Q 040597 276 -TTRNE--SVA-RMMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 276 -TTR~~--~v~-~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.|-|. .+. .......+|++.+-..+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 44331 111 112335688899888888777666554
No 311
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.55 E-value=0.027 Score=59.73 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=73.5
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH-HH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK-AI 212 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~-~i 212 (515)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... ..-...+.|++..-.. ..+. .+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a---~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA---ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh---CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHHHh
Confidence 3568999999988888887542 3345788999999999999999987321 1112334555554321 2222 11
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEccc
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTTRN 279 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~ 279 (515)
+-........... . ....+. ....=.|+||++..........+...+..+. ...+||.||..
T Consensus 259 fG~~~g~~~ga~~-~-~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTGAIS-N-RSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCCCcc-c-CCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111110000000 0 000010 1122346899997776666666666664321 14578887754
No 312
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.53 E-value=0.13 Score=47.00 Aligned_cols=123 Identities=22% Similarity=0.235 Sum_probs=68.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC-------------------Ccc------------------
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-------------------DTF------------------ 203 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~-------------------~~~------------------ 203 (515)
-.|++|+|++|+|||||.+.+-. ....=.+.+||.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 45899999999999999998864 22222344444321 111
Q ss_pred -------cHHHHHHHHHHHhcCCC------CCcccHHHHHHHHHHHhcCCcEEEEecccCCC-Ccccccchhhhccc-CC
Q 040597 204 -------EEIRVAKAIIEGLGESA------SSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDG-DYNKWEPFFFCVKN-GL 268 (515)
Q Consensus 204 -------~~~~~~~~il~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~ 268 (515)
..++...+++..++... ...+.-++..-.|.+.|.-++=++.||..-+. |++...++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 11223334444444321 12233444455677788888889999998542 23333333333332 23
Q ss_pred CCcEEEEEcccHHHHhhh
Q 040597 269 HGSKILVTTRNESVARMM 286 (515)
Q Consensus 269 ~gs~IivTTR~~~v~~~~ 286 (515)
.|-..|+.|..=..|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 466677777765555553
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.52 E-value=0.033 Score=53.60 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 202 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 202 (515)
+.-+++.|+|.+|+|||++|.++.. ........++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5678999999999999999988877 45556888999998874
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=95.52 E-value=0.078 Score=49.88 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=32.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.-.++.|.|.+|+|||++|.++... ...+-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 4568899999999999999887653 2222345677776653 34444443
No 315
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.50 E-value=0.011 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 316
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.50 E-value=0.044 Score=54.36 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
+++.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998863
No 317
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.46 E-value=0.064 Score=51.50 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
+.-.++.|.|.+|+|||++|.++... ....=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 45678999999999999999887653 222234677888765
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.46 E-value=0.013 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998887
No 319
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.44 E-value=0.047 Score=50.13 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998886
No 320
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.41 E-value=0.07 Score=48.16 Aligned_cols=118 Identities=15% Similarity=0.028 Sum_probs=62.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe---CCcccHHHHHHHHH--HH--hcCC-----CCCc---cc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV---SDTFEEIRVAKAII--EG--LGES-----ASSL---SE 225 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~il--~~--l~~~-----~~~~---~~ 225 (515)
...|.|+|..|-||||.|....-. .....+. +..+.. .........+..+- .- .+.. .... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR-AVGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH-HHHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468899999999999999665541 1222222 222222 21223333333320 00 0000 0011 11
Q ss_pred HHHHHHHHHHHhcC-CcEEEEecccCC---CCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 226 FQSLMSHIHRSIEG-KKFFLLLDDVWD---GDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 226 ~~~l~~~l~~~L~~-kr~LlVLDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
.....+..++.+.. +-=|||||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22334445555544 445999999722 12224456777776666777899999975
No 321
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.41 E-value=0.032 Score=52.39 Aligned_cols=87 Identities=26% Similarity=0.312 Sum_probs=51.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC---------------CCC-
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES---------------ASS- 222 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~- 222 (515)
+.-.++.|.|.+|+|||++|.++... ..+..=..++||+...+. ..+.+.+- .++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 45679999999999999999876652 222213457888876643 33333322 22211 000
Q ss_pred ----cccHHHHHHHHHHHhcC-CcEEEEeccc
Q 040597 223 ----LSEFQSLMSHIHRSIEG-KKFFLLLDDV 249 (515)
Q Consensus 223 ----~~~~~~l~~~l~~~L~~-kr~LlVLDdv 249 (515)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566666666666543 4478888986
No 322
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.40 E-value=0.026 Score=48.67 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
++|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 47999999999999999999984 2335566565666555
No 323
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.38 E-value=0.015 Score=59.99 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag-------~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC-------CCEEEECCCChhHHHHHHHHHH
Confidence 5899999999999888754 3588999999999999998887
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.38 E-value=0.066 Score=51.56 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC-CC
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES-AS 221 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-~~ 221 (515)
..+.++..|... .....++|+|+.|.|||||.+.+... + ....+.+++.-.+ ....+-..++......- ..
T Consensus 97 ~~~~~l~~l~~~----~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN----NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC----CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEE-eecchhHHHHHHHhcccccc
Confidence 445555566532 34578999999999999999999873 2 2233344442111 00001112232222110 00
Q ss_pred -------CcccHHHHHHHHHHHh-cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHh
Q 040597 222 -------SLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVAR 284 (515)
Q Consensus 222 -------~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 284 (515)
-..+... ...+...+ ...+=++++|.+- ..+.+..+...+ ..|..||+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 0111111 11222222 3578899999983 323344444443 24778999999766644
No 325
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.24 Score=45.70 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCcEEEEecccCCC-Ccccccchhhhccc-CCCCcEEEEEcccHHHHhhhCCccee
Q 040597 230 MSHIHRSIEGKKFFLLLDDVWDG-DYNKWEPFFFCVKN-GLHGSKILVTTRNESVARMMGSTNII 292 (515)
Q Consensus 230 ~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~ 292 (515)
...+.+.+-=++-|.|||..++- |......+...+.. ..+|+.+|+.|..+.++....+..++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444445556779999988652 22233333333331 23466788888888888877654443
No 326
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.36 E-value=0.086 Score=49.59 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 202 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 202 (515)
+.-.++.|.|.+|+|||++|.++... ....-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 44579999999999999999877652 2223456788887543
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.35 E-value=0.015 Score=48.60 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFE 192 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 192 (515)
|.|+|.+|+|||++|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999987 4556664
No 328
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.33 E-value=0.13 Score=54.27 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC---------------CCCc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES---------------ASSL 223 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~~ 223 (515)
..-.++.|.|++|+|||||+.++... ...+-..+++++..+ +..++...+ +.++-. .+..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 45679999999999999999888763 333334567777655 344444443 333321 1111
Q ss_pred ccHHHHHHHHHHHhcC-CcEEEEeccc
Q 040597 224 SEFQSLMSHIHRSIEG-KKFFLLLDDV 249 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~~-kr~LlVLDdv 249 (515)
...+.....+.+.+.. +.-++|+|.+
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 2234555555555533 4557888887
No 329
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.32 E-value=0.13 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|.|+.|.|||||.+.+..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998876
No 330
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.14 Score=48.38 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHhhhCCcceeec
Q 040597 232 HIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMGSTNIIFI 294 (515)
Q Consensus 232 ~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 294 (515)
.+...+..++=+++||+... .|......+...+.....|..||++|.+...... ....+.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 34555666778999998743 2323334455555432236678888887766644 3344444
No 331
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.11 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++++|+.|+||||++.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 332
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.32 E-value=0.065 Score=49.67 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=50.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-ccHHHHHHHHHHHhcCC-------CCCcccH-------
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGES-------ASSLSEF------- 226 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~------- 226 (515)
.-++|.|.+|+|||+|+..+.++. .-+.++++.+.+. ....++.+++...-... ..+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568899999999999999888742 2334577877764 34455555554331110 1111111
Q ss_pred --HHHHHHHHHHhcCCcEEEEeccc
Q 040597 227 --QSLMSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 227 --~~l~~~l~~~L~~kr~LlVLDdv 249 (515)
-...+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 112233333 789999999998
No 333
>PRK00625 shikimate kinase; Provisional
Probab=95.31 E-value=0.012 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 334
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.31 E-value=0.09 Score=53.96 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=47.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC-------CCCCccc----HHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE-------SASSLSE----FQSL 229 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-------~~~~~~~----~~~l 229 (515)
-..++|+|..|+|||||++.+... .....+++++.-....++..+....+..... +.++... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357999999999999999888752 2223345555433334444444433333211 1111111 1111
Q ss_pred HHHHHHHh--cCCcEEEEeccc
Q 040597 230 MSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 230 ~~~l~~~L--~~kr~LlVLDdv 249 (515)
.-.+.+++ +++..||++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233333 589999999998
No 335
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.054 Score=54.03 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS-----LSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~l~~~l~ 234 (515)
.-.+|.|-|.+|||||||.-++.. ++...- .+.+|+-.+...-. +--.+.++....+ ..+++.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 456899999999999999998887 454444 67787765533222 2234455543322 345555555544
Q ss_pred HHhcCCcEEEEeccc
Q 040597 235 RSIEGKKFFLLLDDV 249 (515)
Q Consensus 235 ~~L~~kr~LlVLDdv 249 (515)
+.++-|+|+|-+
T Consensus 166 ---~~~p~lvVIDSI 177 (456)
T COG1066 166 ---QEKPDLVVIDSI 177 (456)
T ss_pred ---hcCCCEEEEecc
Confidence 367889999987
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.29 E-value=0.05 Score=54.72 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhh----hcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEV----KRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIH 234 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~ 234 (515)
..++=+-|||..|.|||.|.-.+|+...+ +-||. ..+.++-+.+..-......+ ..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l----~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPL----PQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccH----HHHH
Confidence 45778999999999999999999985333 22332 23333333332211111222 3334
Q ss_pred HHhcCCcEEEEecccCCCCcccccchhhhccc-CCCCcEEEEEcccH
Q 040597 235 RSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGSKILVTTRNE 280 (515)
Q Consensus 235 ~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTTR~~ 280 (515)
+.+.++..||.||.+.-.|..+--.+...|.. ...|. |||+|.|.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 44566777999998754443322223333332 23455 66666554
No 337
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.13 Score=53.43 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=27.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 200 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 200 (515)
..+++++|+.|+||||++.+++.....+..-..+..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4799999999999999999888632222222234555543
No 338
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.068 Score=56.63 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=73.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...+.+.++|++|.|||.||+.+++ ....+| +.+... +++....+ .....+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 4566899999999999999999998 333344 232221 11111111 111223333334446
Q ss_pred CCcEEEEecccCCC-----Cc------ccccchhhhcccC--CCCcEEEEEcccHHHHhh-h----CCcceeeccCCChh
Q 040597 239 GKKFFLLLDDVWDG-----DY------NKWEPFFFCVKNG--LHGSKILVTTRNESVARM-M----GSTNIIFIEQLTEE 300 (515)
Q Consensus 239 ~kr~LlVLDdvw~~-----~~------~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~ 300 (515)
..++.|.+|.++.- +. ....++...+... ..+..||-||-....... + .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999998431 00 1122333333322 223334444443332221 1 11557888888999
Q ss_pred hhHHHHHHhhc
Q 040597 301 ECWSLFKRLAF 311 (515)
Q Consensus 301 ~a~~Lf~~~~~ 311 (515)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999988874
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.27 E-value=0.025 Score=48.01 Aligned_cols=39 Identities=26% Similarity=0.124 Sum_probs=27.7
Q ss_pred hHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 143 EKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 143 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+..++-+.|... -..-.+|.+.|.-|+||||+++.+.+.
T Consensus 7 ~t~~l~~~l~~~---l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKP---LDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHh---CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 444455555432 123458999999999999999999874
No 340
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.11 Score=47.51 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999885
No 341
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.24 E-value=0.05 Score=51.97 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998886
No 342
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.23 E-value=0.079 Score=58.09 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
+.-+++-|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45688899999999999999776652 22333567899888877743 5556654421 122334555555
Q ss_pred HHHhc-CCcEEEEecccC
Q 040597 234 HRSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdvw 250 (515)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55553 456789999973
No 343
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.23 E-value=0.095 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 344
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.23 E-value=0.015 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999887
No 345
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.22 E-value=0.14 Score=49.22 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=51.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc-
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE- 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~- 238 (515)
..+++++|.+|+||||++..+... ....=..+.+++..... ....-++.....++.+.....+...+.+.+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 469999999999999999888653 22221245556554321 22222333333333221122233444444433212
Q ss_pred CCcEEEEecccCCC--Ccccccchhhhc
Q 040597 239 GKKFFLLLDDVWDG--DYNKWEPFFFCV 264 (515)
Q Consensus 239 ~kr~LlVLDdvw~~--~~~~~~~l~~~l 264 (515)
.+.=++++|..-.. +....+.+...+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 24567888987443 223344444443
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.19 E-value=0.049 Score=55.16 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred CccccccchHHHHHHHHhcc-------C--CCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCE-------S--SEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.++.++.+...+... . .....++.|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 35677777777776555431 0 0012346789999999999999999987
No 347
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.17 E-value=0.015 Score=52.33 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 348
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.17 E-value=0.16 Score=48.11 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=35.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.-.++.|.|.+|+|||+++.++..+. ...+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 44689999999999999998876632 222133577777665 444555555433
No 349
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.14 E-value=0.013 Score=52.99 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 350
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.14 E-value=0.013 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 351
>PLN02348 phosphoribulokinase
Probab=95.14 E-value=0.12 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.....+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998887
No 352
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.13 E-value=0.12 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.-.+++|+|..|.|||||++.++.-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998863
No 353
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.11 E-value=0.14 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998875
No 354
>PRK15453 phosphoribulokinase; Provisional
Probab=95.10 E-value=0.14 Score=49.22 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc--cHHHHHHHHH--HHh--cCCC--CCcccHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAII--EGL--GESA--SSLSEFQSLM 230 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il--~~l--~~~~--~~~~~~~~l~ 230 (515)
....+|+|.|.+|+||||+|+.+.+ .....-...+.++...-. +-...-..+. ..- +-.. ++..+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3567999999999999999998875 222111123444433322 2222211111 111 1122 5566778888
Q ss_pred HHHHHHhcC
Q 040597 231 SHIHRSIEG 239 (515)
Q Consensus 231 ~~l~~~L~~ 239 (515)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877654
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.09 E-value=0.12 Score=47.09 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccc--------ceeeEEEeCCcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNF--------EKVIWVCVSDTF 203 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~~~~~~ 203 (515)
.++.|.|++|+||||++..+.........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488899999999999998776642222222 357888877753
No 356
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.08 E-value=0.022 Score=63.29 Aligned_cols=186 Identities=22% Similarity=0.207 Sum_probs=84.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---SLSEFQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~~~ 236 (515)
+.+++.|+|+.+.||||+.+.+.-..- ...+-++|++.... ...++..|+..++.... ...+...-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 457899999999999999988864211 11122233332110 11111222222222111 011111111112222
Q ss_pred hc--CCcEEEEecccCCCC-cccccchhhh-ccc-CCCCcEEEEEcccHHHHhhhCCcceeeccCCC-hhhhHHHHHHhh
Q 040597 237 IE--GKKFFLLLDDVWDGD-YNKWEPFFFC-VKN-GLHGSKILVTTRNESVARMMGSTNIIFIEQLT-EEECWSLFKRLA 310 (515)
Q Consensus 237 L~--~kr~LlVLDdvw~~~-~~~~~~l~~~-l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~-~~~a~~Lf~~~~ 310 (515)
+. ..+-|++||..-... ...-..+... +.. ...|+.+|+||....+.........+.-..+. +.+......+..
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Ykl~ 481 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYRLL 481 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEEEe
Confidence 22 477899999985432 2222223221 211 12477899999998877654432211111111 111111111111
Q ss_pred cCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh---hHHhhhh
Q 040597 311 FFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK---EWQRILD 357 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~---~w~~~l~ 357 (515)
.+.+ -...|-+|++.+ |+|-.+..-|.-+... ....+++
T Consensus 482 --~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 523 (782)
T PRK00409 482 --IGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIA 523 (782)
T ss_pred --eCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 1110 123466677776 7888887777665543 4444443
No 357
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.05 E-value=0.22 Score=46.65 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=89.7
Q ss_pred CccccccchHHH--H-HHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNE--L-LNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~--l-~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
.+++|.++...+ + ++.|..... .+-.++-|..+|++|.|||.+|+.+.+. .+..| +.+.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech-------HH
Confidence 467887765433 3 344432210 1245788999999999999999999984 33222 22211 11
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC----c--------ccccchhhhcc--cCCCCcEEEEE
Q 040597 211 AIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD----Y--------NKWEPFFFCVK--NGLHGSKILVT 276 (515)
Q Consensus 211 ~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~----~--------~~~~~l~~~l~--~~~~gs~IivT 276 (515)
-|-+.++. ...++.+.....-+.-+|++.+|.++--. . +..+.+..-+. ..+.|-.-|-.
T Consensus 187 liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 12222221 11222222222234568999999873210 0 11112222222 12335545555
Q ss_pred cccHHHHhh-hCC--cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 277 TRNESVARM-MGS--TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 277 TR~~~v~~~-~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
|.+..+... +.+ ..-|+...-+++|-..++...+-.-. -.+..-.+.++++.+|+.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P-----lpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP-----LPVDADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC-----CccccCHHHHHHHhCCCC
Confidence 555544332 111 34566666777888888887763211 111222456677777653
No 358
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.42 Score=46.46 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=47.5
Q ss_pred cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhhh-CCcceeeccCCChhhhHHHHH
Q 040597 238 EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARMM-GSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
.+++=++|+|+++..+....+.+...+..-.+++.+|++|.+. .+...+ +....+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 4566789999999888888888888887766667777776554 344332 3356677766 6666555554
No 359
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.02 E-value=0.13 Score=47.35 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHhcCCcEEEEecccCC-CCccccc-chhhhcccCC-C-CcEEEEEcccHHHHhhhCCcceeec
Q 040597 232 HIHRSIEGKKFFLLLDDVWD-GDYNKWE-PFFFCVKNGL-H-GSKILVTTRNESVARMMGSTNIIFI 294 (515)
Q Consensus 232 ~l~~~L~~kr~LlVLDdvw~-~~~~~~~-~l~~~l~~~~-~-gs~IivTTR~~~v~~~~~~~~~~~l 294 (515)
.+...+..++-+++||+.-. .+..... .+...+.... . |..||++|.+...... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 34556667888999998743 2222334 4444444322 2 5568888888776543 2344444
No 360
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.01 E-value=0.063 Score=51.06 Aligned_cols=77 Identities=21% Similarity=0.123 Sum_probs=43.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc--HHHHHHHHHHH----hcCCC--CCcccHHHHHHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE--EIRVAKAIIEG----LGESA--SSLSEFQSLMSHIH 234 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~----l~~~~--~~~~~~~~l~~~l~ 234 (515)
+|+|.|.+|+||||+|+.+.+. ....=..++.++...-.. -...-..+... .+-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988762 222111234444333221 11111122221 12222 55667788888888
Q ss_pred HHhcCCc
Q 040597 235 RSIEGKK 241 (515)
Q Consensus 235 ~~L~~kr 241 (515)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776653
No 361
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.01 E-value=0.018 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.01 E-value=0.13 Score=52.55 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987765
No 363
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.23 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 364
>PF13479 AAA_24: AAA domain
Probab=94.99 E-value=0.08 Score=49.22 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 202 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 202 (515)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46889999999999999765 34556665543
No 365
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.98 E-value=0.18 Score=52.49 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.. ..+... ...++.... ...+.+.+.+.+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 34569999999999999999988763 32222357888765533 333222 344443211 123444444444
Q ss_pred HHHhcCCcEEEEecccC
Q 040597 234 HRSIEGKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~~kr~LlVLDdvw 250 (515)
. +.+.-+||+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 3 2356689999974
No 366
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.97 E-value=0.22 Score=47.21 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcc--cCCCCcEEEEEcccHHHHhhhCC
Q 040597 225 EFQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVK--NGLHGSKILVTTRNESVARMMGS 288 (515)
Q Consensus 225 ~~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~--~~~~gs~IivTTR~~~v~~~~~~ 288 (515)
.-+...-.+...|..+.=+|+||.--+ -|...--.+...+. ....|..||+++.+-+.|..++.
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 334444556677777888889997521 11111111222222 12347779999999888876554
No 367
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.95 E-value=0.027 Score=51.03 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=27.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
.+++.|+|+.|+|||||++.+.. .....|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999987 3455665444443
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.95 E-value=0.017 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 378999999999999998876
No 369
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.94 E-value=0.04 Score=52.66 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 145 NELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 145 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.+++..+... ..+..+|+|.|.||+|||||...+.....-..+=-.++=|+-|++++--.++-+
T Consensus 38 ~~ll~~l~p~---tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR---TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc---CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4566666644 356789999999999999999887764322333334555666667665555443
No 370
>PRK06217 hypothetical protein; Validated
Probab=94.94 E-value=0.018 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998873
No 371
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.93 E-value=0.017 Score=52.39 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 372
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.92 E-value=0.023 Score=52.51 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+.|.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999998875
No 373
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.91 E-value=0.029 Score=52.47 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---SLSEFQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~~~ 236 (515)
+.+++.|+|+.|.||||+.+.+.... + .+..-++|.+... .......|+..++.... ..+....-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~--la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-L--MAQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H--HHHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 45799999999999999998876421 1 1111123332220 11122233333332211 111111112222233
Q ss_pred h--cCCcEEEEecccCCC----Cc--ccccchhhhcccCCCCcEEEEEcccHHHHhhhC
Q 040597 237 I--EGKKFFLLLDDVWDG----DY--NKWEPFFFCVKNGLHGSKILVTTRNESVARMMG 287 (515)
Q Consensus 237 L--~~kr~LlVLDdvw~~----~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~ 287 (515)
+ ...+-|++||..-.. +. ..|..+ ..+.. ..|+.+|+||-...+...+.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3 356889999998321 11 112222 22322 24678999999877766543
No 374
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.90 E-value=0.02 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++++|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 375
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.90 E-value=0.055 Score=48.95 Aligned_cols=37 Identities=27% Similarity=0.193 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
++.|.|++|+|||+||.++... ....=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 3679999999999999887663 222224577887765
No 376
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.87 E-value=0.12 Score=50.05 Aligned_cols=86 Identities=22% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-------CcccHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-------SLSEFQSLMS 231 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~l~~ 231 (515)
.+..+|.|+|.+|+|||||...+.+ ....... ++.+ ..+..+..+ .+.+...+.+.. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 5688999999999999999998887 3333332 2222 111112211 122333332210 1123344455
Q ss_pred HHHHHhcCCcEEEEecccC
Q 040597 232 HIHRSIEGKKFFLLLDDVW 250 (515)
Q Consensus 232 ~l~~~L~~kr~LlVLDdvw 250 (515)
.+........=+||++++-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444445677889984
No 377
>PRK13947 shikimate kinase; Provisional
Probab=94.86 E-value=0.02 Score=51.16 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998886
No 378
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.86 E-value=0.018 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 379
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.86 E-value=0.1 Score=56.21 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=34.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhccc---ceeeEEEeCCcccHHHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.++..|.|.+|.||||++..+... +.... ...+.+.....-....+.+.+-.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 368899999999999999888763 22211 24566666655555555555543
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.85 E-value=0.074 Score=56.16 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=73.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchh-hhccc-----ceeeEEEeCC-c----ccH------------HHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDE-VKRNF-----EKVIWVCVSD-T----FEE------------IRVAKAIIEGLG 217 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F-----~~~~wv~~~~-~----~~~------------~~~~~~il~~l~ 217 (515)
-..|+|+|+.|+|||||.+.+..... ..+.. -.+.|+.-.. . .++ ....+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 34799999999999999998854211 01100 1122322111 0 011 233444444444
Q ss_pred CCCCC-------cccHHHHHHHHHHHhcCCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEcccHHHHhhhCCc
Q 040597 218 ESASS-------LSEFQSLMSHIHRSIEGKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRNESVARMMGST 289 (515)
Q Consensus 218 ~~~~~-------~~~~~~l~~~l~~~L~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~ 289 (515)
-..+. .+.-+...-.+...+-.++=+||||.--+ -|.+..+.+..+|... +|+ ||+.|.++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-c
Confidence 33221 12223334445566677888999997622 2334455666666543 365 999999998877655 3
Q ss_pred ceeeccC
Q 040597 290 NIIFIEQ 296 (515)
Q Consensus 290 ~~~~l~~ 296 (515)
.++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 4555554
No 381
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.85 E-value=1 Score=44.35 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=32.9
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
++++++++.+|+..++.-..-.+-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999876643221 111233445666777779998543
No 382
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.84 E-value=0.18 Score=52.44 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
..-.++.|.|.+|+|||||+.++... ....-..++|++..+. ...+.. -...++.... ...+.+.+...+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 45578999999999999999888663 2222235778876543 222222 1223332211 123444444444
Q ss_pred HHHhcCCcEEEEecccC
Q 040597 234 HRSIEGKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~~kr~LlVLDdvw 250 (515)
.+ .+.-++|+|.+.
T Consensus 167 ~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 167 EE---ENPQACVIDSIQ 180 (454)
T ss_pred Hh---cCCcEEEEecch
Confidence 32 356689999873
No 383
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.84 E-value=0.038 Score=55.04 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=76.9
Q ss_pred ccccccchHHHHHHHHhccCC------------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhh--ccc---ceeeEEE
Q 040597 136 EVFSGVDEKNELLNKLLCESS------------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK--RNF---EKVIWVC 198 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F---~~~~wv~ 198 (515)
+..|-..+...+.+...-... .-..--+++|+|.+|+||||+.+.+....... ..| .+.+=+.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 445556666677666542210 00223489999999999999998886532111 111 0111111
Q ss_pred -------e----CCcccHHHHHHHHH-------------HHhcCCCC--------CcccHHHHHHHHHHHhcCCcEEEEe
Q 040597 199 -------V----SDTFEEIRVAKAII-------------EGLGESAS--------SLSEFQSLMSHIHRSIEGKKFFLLL 246 (515)
Q Consensus 199 -------~----~~~~~~~~~~~~il-------------~~l~~~~~--------~~~~~~~l~~~l~~~L~~kr~LlVL 246 (515)
+ ...++...++.++. ...+..+. +.++-+.-..+|.+.+.++.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 11222223333332 22222211 1122233345677778888888888
Q ss_pred cccCCC-Ccccccchhhhccc--CCCCcEEEEEcccHHHHhhhCCcc
Q 040597 247 DDVWDG-DYNKWEPFFFCVKN--GLHGSKILVTTRNESVARMMGSTN 290 (515)
Q Consensus 247 Ddvw~~-~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~~~~ 290 (515)
|....- |...--.+...+.. ...|+.+++.|+.+++.+.+.++.
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 987321 11111112222221 124777777777787777665543
No 384
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.02 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.1
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 040597 163 VISLVGLGGIGKTTLAQLAY 182 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~ 182 (515)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998775
No 385
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.12 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.|.+.|.+|+||||+|+.+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999998887
No 386
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.80 E-value=0.08 Score=56.29 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=69.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
..++|....+.++++.+..-. ..-.-|.|+|..|+||+.+|+.++.. ....-...+.+++..-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A---~~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA---MLDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh---CCCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCC--HHHHHH---
Confidence 368898888888877765322 12234789999999999999997652 11111223445555422 122222
Q ss_pred HhcCCCCCc-ccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEcccH
Q 040597 215 GLGESASSL-SEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTTRNE 280 (515)
Q Consensus 215 ~l~~~~~~~-~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 280 (515)
.+.+..+.. ........-+.+ ....=.|+||+++.........+...+..+. ...+||.||...
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 111111100 000000000000 1223357899998776655566666664321 134788877643
No 387
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.75 E-value=0.21 Score=55.36 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=78.3
Q ss_pred cchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCC
Q 040597 141 VDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESA 220 (515)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 220 (515)
.....+|.+.+.. ..|+.|+|..|.||||-.-+++-+.-. ...+.+-+.=........+...+.++++...
T Consensus 52 ~~~~~~i~~ai~~-------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 52 TAVRDEILKAIEQ-------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHHh-------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 3456677777753 469999999999999999666643111 1122333333333456678888888887642
Q ss_pred CC-------------------cccHHHHHHHHH-HHhcCCcEEEEecccCCCCcc---cccchhhhcccCCCCcEEEEEc
Q 040597 221 SS-------------------LSEFQSLMSHIH-RSIEGKKFFLLLDDVWDGDYN---KWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 221 ~~-------------------~~~~~~l~~~l~-~~L~~kr~LlVLDdvw~~~~~---~~~~l~~~l~~~~~gs~IivTT 277 (515)
.+ ..+...+..+++ +.+-.+=-.||+|.++..+.. ....++..+......-||||+|
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 10 112344555554 333344457999999764321 1122222233333358999988
Q ss_pred cc---HHHHhhhC
Q 040597 278 RN---ESVARMMG 287 (515)
Q Consensus 278 R~---~~v~~~~~ 287 (515)
=. +..+..++
T Consensus 203 ATld~~rfs~~f~ 215 (845)
T COG1643 203 ATLDAERFSAYFG 215 (845)
T ss_pred cccCHHHHHHHcC
Confidence 64 33444444
No 388
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.74 E-value=0.11 Score=56.95 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998854
No 389
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.72 E-value=0.14 Score=52.34 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=46.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC-------CCCcccHHH-----
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES-------ASSLSEFQS----- 228 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~~~----- 228 (515)
-..++|+|..|+|||||++.+.... + ....++...-...-...++....+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 3578999999999999999888632 1 222233222222333444555444332111 111111111
Q ss_pred HHHHHHHHh--cCCcEEEEeccc
Q 040597 229 LMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 229 l~~~l~~~L--~~kr~LlVLDdv 249 (515)
..-.+.+++ +++..||++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 588999999998
No 390
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.72 E-value=0.075 Score=58.23 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=61.5
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
+.++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.+++... ..-...+.|++..-. ...+..+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a---~~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elfg 398 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA---KSSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFLG 398 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh---CcCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhcC
Confidence 357788877777777665432 1223478999999999999999987311 111122334444322 1222222222
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcc
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
........ ... ..+ -....=.|+||++..........|...+.
T Consensus 399 ~~~~~~~~-~~~----g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~ 441 (638)
T PRK11388 399 SDRTDSEN-GRL----SKF---ELAHGGTLFLEKVEYLSPELQSALLQVLK 441 (638)
T ss_pred CCCcCccC-CCC----Cce---eECCCCEEEEcChhhCCHHHHHHHHHHHh
Confidence 11100000 000 000 01233468999997776656666666664
No 391
>PLN02924 thymidylate kinase
Probab=94.69 E-value=0.16 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|-|..|+||||+|+.+.+.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~ 39 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSF 39 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999874
No 392
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.67 E-value=0.033 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999998873
No 393
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.65 E-value=0.026 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+||||||+.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999887
No 394
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.2 Score=55.43 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=66.9
Q ss_pred ccccccchHHHHHHHHhccCCC--C-CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSE--Q-KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.++|.++-+..+.+.+.....+ + .+...+.+.|+.|+|||-||+.+.. .+-+..+..+-++.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--
Confidence 4666677777777766643211 1 2567788999999999999998876 2323333333344333 222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcE-EEEecccCCCCcccccchhhhcc
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKF-FLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
...+...++.--. .+....|.+.++.++| +|.||||...+......+...+.
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 3333222221111 1112345555666655 77799997766555555555554
No 395
>PF13245 AAA_19: Part of AAA domain
Probab=94.63 E-value=0.074 Score=40.41 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=17.1
Q ss_pred cEEEEEEecCCCcHHHHH-HHHhc
Q 040597 161 LHVISLVGLGGIGKTTLA-QLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA-~~v~~ 183 (515)
.+++.|.|++|.|||+++ ..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457888999999999555 44443
No 396
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.63 E-value=0.032 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999986
No 397
>PRK13949 shikimate kinase; Provisional
Probab=94.62 E-value=0.025 Score=50.54 Aligned_cols=21 Identities=48% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-|.|+|++|+||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998887
No 398
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.024 Score=51.46 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999988873
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.61 E-value=0.14 Score=45.66 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=44.2
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHHhcCC
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSL---SEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~L~~k 240 (515)
+.|.|.+|+|||++|.++... ....++++.-...++. ++.+.|.......+..- .....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999888752 2245677776666654 34444444332222211 1122333333221 2 2
Q ss_pred cEEEEeccc
Q 040597 241 KFFLLLDDV 249 (515)
Q Consensus 241 r~LlVLDdv 249 (515)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337899986
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.60 E-value=0.27 Score=48.65 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888763
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.59 E-value=0.16 Score=50.89 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCcHHHH-HHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTL-AQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI 237 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtL-A~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L 237 (515)
+.++|+++|+.|+||||- |+..+.- .....=..+..|+... .....+-++...+-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 478999999999999864 4444432 1122233466666554 12334444555555555533333444444444332
Q ss_pred cCCcEEEEecccCCC--Ccccccchhhhccc
Q 040597 238 EGKKFFLLLDDVWDG--DYNKWEPFFFCVKN 266 (515)
Q Consensus 238 ~~kr~LlVLDdvw~~--~~~~~~~l~~~l~~ 266 (515)
.+.. +|.+|-+... +......+..++..
T Consensus 280 ~~~d-~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 280 RDCD-VILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred hcCC-EEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 3333 4445655332 22233445555543
No 402
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.58 E-value=0.18 Score=51.97 Aligned_cols=88 Identities=20% Similarity=0.156 Sum_probs=51.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGES-------ASSLSEFQ----- 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 227 (515)
-.-++|.|.+|+|||||+..+...... .+=+.++++-+.+.. ...+++..++..-... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999887763221 112356677666543 4455666665432111 11111111
Q ss_pred HHHHHHHHHh---cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223344554 679999999998
No 403
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.56 E-value=0.27 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|.++|..|+||||++..+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~ 23 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGK 23 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998765
No 404
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.56 E-value=0.084 Score=53.50 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHHhcc--------CC-CCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCE--------SS-EQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~--------~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.++.++.+..++... .. .......|.++|++|+|||+||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 35788888888877777431 00 011246789999999999999998887
No 405
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.56 E-value=0.12 Score=49.51 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred ccccccchHHHHHHHHhccC--CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES--SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.++|..-..+.++..+..-- ....++-+++++|.+|+||.-+++.+.++-.....= ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 45665544555555443211 114678899999999999999998887742111100 00001111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcc
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
.... -+....++.....|++++ .-+|-|+|||+++.....-.+.+.+.+.
T Consensus 149 at~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111 122223333333333333 3479999999998777666777777665
No 406
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.54 E-value=0.39 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.++++.|+.|+|||||.+.+..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999976
No 407
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.2 Score=42.69 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=58.7
Q ss_pred ccccccchHHHHHHHHhccC-------CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES-------SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
++-|-+...+.|.+...-.. ....+.+-|.++|++|.||+-||+.|+... . .-|+++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--n-----STFFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--N-----STFFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--C-----CceEEeehH------
Confidence 45677777777766543211 113457889999999999999999999742 2 233455542
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCC
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWD 251 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~ 251 (515)
++++..-+ ..+.++..|.+.- ++|+-+|.+|.++.
T Consensus 201 --DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 --DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 22222221 1234444454443 57899999999854
No 408
>PRK14530 adenylate kinase; Provisional
Probab=94.54 E-value=0.026 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 409
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.52 E-value=0.069 Score=52.59 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=32.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
.+++.+.|.||+||||+|....- ........+.-|+.....++..++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999977543 2333334566676666555555443
No 410
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.034 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987776
No 411
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.50 E-value=0.03 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999763
No 412
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.50 E-value=0.028 Score=50.07 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 413
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.50 E-value=0.031 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998875
No 414
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.48 E-value=0.23 Score=47.70 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=38.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE 218 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 218 (515)
+-.++.|-|.+|+|||++|..++.+.... +-..++|++... +..++...++.....
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~-~~~~vly~SlEm--~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN-GGYPVLYFSLEM--SEEELAARLLARLSG 73 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT-TSSEEEEEESSS---HHHHHHHHHHHHHT
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh-cCCeEEEEcCCC--CHHHHHHHHHHHhhc
Confidence 34588899999999999998888753322 235677777654 556677777766644
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.46 E-value=0.027 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998886
No 416
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.068 Score=49.27 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=27.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcc-cceeeEEEeCCcccHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEEI 206 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~~~~~~~~ 206 (515)
.|+|+|-||+||||+|..+... ....+ |+ +.=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChH
Confidence 5899999999999999885542 22333 33 4456666655543
No 417
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.44 E-value=0.086 Score=48.07 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 418
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.43 E-value=0.27 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998864
No 419
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.43 E-value=0.22 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++-..++|+|+.|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998864
No 420
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.41 E-value=0.03 Score=48.91 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998876
No 421
>COG4240 Predicted kinase [General function prediction only]
Probab=94.41 E-value=0.23 Score=45.58 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC-----CCCCcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE-----SASSLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~l~~~l 233 (515)
+.+-+++|.|+-|+||||++..+++....+.. ..++..++.+-+-...-...++++... ..+...+..-+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999984333332 466677766644444445555555421 122334455555566
Q ss_pred HHHhcCCcE
Q 040597 234 HRSIEGKKF 242 (515)
Q Consensus 234 ~~~L~~kr~ 242 (515)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 665566643
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.40 E-value=0.059 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999998874
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.39 E-value=0.047 Score=49.56 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=56.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHHHhc-
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---SLSEFQSLMSHIHRSIE- 238 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~~~L~- 238 (515)
++.|+|+.|.||||+.+.+.-.... .+-.+ ++.... .. ...+.+++..++.... .......-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~--~v~a~~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGS--FVPAES-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhCC--Ceeehh-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 4679999999999999988743211 11111 111111 00 0001111111111111 11122222223444443
Q ss_pred -CCcEEEEecccCCCC-cccccc----hhhhcccCCCCcEEEEEcccHHHHhhhC
Q 040597 239 -GKKFFLLLDDVWDGD-YNKWEP----FFFCVKNGLHGSKILVTTRNESVARMMG 287 (515)
Q Consensus 239 -~kr~LlVLDdvw~~~-~~~~~~----l~~~l~~~~~gs~IivTTR~~~v~~~~~ 287 (515)
.++-|+++|..-... ...-.. +...+.. ..++.+|++|.+..+...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 378899999984422 111111 2222222 13677999999887776543
No 424
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.38 E-value=0.036 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998887
No 425
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.36 E-value=0.073 Score=53.15 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=45.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
.++|.++....+...+..+ +-+.+.|.+|+|||+||+.+.. ... ...++|.+.......++.-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~-------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG-------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC-------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcC
Confidence 4788888888877777644 3588999999999999999987 233 2345667776666655443
No 426
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.36 E-value=0.077 Score=53.26 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=58.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.|+|+.|+||||+.+.+.. .+..+....++. +.++... ..... ..+........+.....+.++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 46899999999999999998876 243344444443 2222111 00000 000000000111123455677777788
Q ss_pred cEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH
Q 040597 241 KFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES 281 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 281 (515)
+=.|++|.+. +.+.+... +.....|..|+.|.-...
T Consensus 196 pd~i~vgEir--d~~~~~~~---l~aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELA---LTAAETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCC--CHHHHHHH---HHHHHcCCcEEEEEcCCC
Confidence 8899999994 33344332 222334665666665443
No 427
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.36 E-value=0.17 Score=43.84 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999988774
No 428
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.34 E-value=0.14 Score=52.94 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=53.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-.-++|.|.+|+|||||+..+.+... +.+-+.++++-+.+.. ...++...+...-... ..+.... .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35789999999999999988887422 2355777777776643 3445555554432111 1111111 1
Q ss_pred HHHHHHHHHh---cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223344554 389999999999
No 429
>PRK13975 thymidylate kinase; Provisional
Probab=94.32 E-value=0.035 Score=50.78 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998887
No 430
>PRK13948 shikimate kinase; Provisional
Probab=94.32 E-value=0.036 Score=50.07 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.....|.++|+.|+||||+++.+.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998886
No 431
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.31 E-value=0.38 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-.+++|+|+.|+|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 432
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.31 E-value=0.027 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876
No 433
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.49 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|..|.|||||++.++.
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998875
No 434
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.26 E-value=0.12 Score=47.49 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC---cccHHHHHHHHH
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS---LSEFQSLMSHIH 234 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~ 234 (515)
...+.++.|.|.+|+||||++..+... .. ....+.++...-.....-+..+... ...... ......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 457889999999999999999987752 11 3445555533311111112222222 111110 122344556666
Q ss_pred HHhcCCcEEEEecccC
Q 040597 235 RSIEGKKFFLLLDDVW 250 (515)
Q Consensus 235 ~~L~~kr~LlVLDdvw 250 (515)
+..-.+++=+|+|..-
T Consensus 87 ~~a~~~~~nii~E~tl 102 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTL 102 (199)
T ss_dssp HHHHHCT--EEEE--T
T ss_pred HHHHHcCCCEEEecCC
Confidence 6666777788889874
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.26 E-value=0.18 Score=49.76 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=47.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC-CcccHHHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS-DTFEEIRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-..++|+|..|.|||||.+.+..... -+.....-+. .......+....+..-... ..+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998887321 1233333333 2334455555554432211 1111111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233333 689999999998
No 436
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.26 E-value=0.042 Score=44.63 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=19.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHh
Q 040597 161 LHVISLVGLGGIGKTTLAQLAY 182 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~ 182 (515)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999998875
No 437
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.24 E-value=0.17 Score=51.75 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=49.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc-HHHHHHHHHHHhcCC-------CCCcccHH-----
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVAKAIIEGLGES-------ASSLSEFQ----- 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 227 (515)
-..++|+|..|+|||||++.+... ...+.++.+-+.+... ..++...++..-+.. ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 357999999999999999988863 1224566666666443 344555544331111 11111111
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112233333 689999999998
No 438
>PRK08149 ATP synthase SpaL; Validated
Probab=94.23 E-value=0.2 Score=51.37 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=48.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-..++|+|..|+|||||+..++... .-+.++...+.. ..+...+..+.+...... ..+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4578999999999999999888632 223333333433 234445555555432211 1111111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
.....+.+++ +++..||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999998
No 439
>PRK05922 type III secretion system ATPase; Validated
Probab=94.22 E-value=0.18 Score=51.65 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCC-------CCccc-----HH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESA-------SSLSE-----FQ 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~-----~~ 227 (515)
-..++|+|..|+|||||.+.+.... ..+...++.++. .......+.+......... .+... ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999888631 223333333333 2233444444443322211 11111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222334444 589999999998
No 440
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.22 E-value=0.26 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988873
No 441
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.22 E-value=0.055 Score=57.04 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=43.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
.+++.-.+-++++..||...-.+....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 34555566778888888754332344679999999999999999998873 2456666764
No 442
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.038 Score=51.26 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345899999999999999998864
No 443
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.21 E-value=0.23 Score=47.56 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=52.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhh--hcccceeeEEEeCCccc-HHHHHHHHHHHhcCC-------CCCcccHH----
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEV--KRNFEKVIWVCVSDTFE-EIRVAKAIIEGLGES-------ASSLSEFQ---- 227 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 227 (515)
.-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+... ..+++..+...-... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999888764221 12246778888877543 455555554432111 01111111
Q ss_pred -HHHHHHHHHh---cCCcEEEEeccc
Q 040597 228 -SLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 228 -~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...-.+.+++ ++++.|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122334444 378999999998
No 444
>PRK14527 adenylate kinase; Provisional
Probab=94.20 E-value=0.039 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|+|++|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 445
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.18 E-value=0.16 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++..|.|.+|.||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6889999999999999988765
No 446
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.25 Score=45.49 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
...|+|=|.-|+||||.++.++. ..+...-.++|..-......-+..+++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~ 52 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIREL 52 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHH
Confidence 36899999999999999999998 455444355555444443333333333
No 447
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.18 E-value=0.15 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=17.3
Q ss_pred EEEEEEecCCCcHHHHH-HHHhc
Q 040597 162 HVISLVGLGGIGKTTLA-QLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA-~~v~~ 183 (515)
+.+.|.|..|.|||+.+ ..++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 67899999999999954 44444
No 448
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.18 E-value=0.2 Score=48.04 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=46.2
Q ss_pred EEEEEEecCCCcHHHHH-HHHhcchhhhccccee-eEEEeCCcc-cHHHHHHHHHHHhcCC--------CCCcccH----
Q 040597 162 HVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEKV-IWVCVSDTF-EEIRVAKAIIEGLGES--------ASSLSEF---- 226 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~il~~l~~~--------~~~~~~~---- 226 (515)
.-++|.|..|+|||+|| ..+.+. .+-+.+ +++-+.+.. ...++.+.+...-... .++....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 555542 123444 555565543 3445555555321111 1111111
Q ss_pred ----HHHHHHHHHHhcCCcEEEEeccc
Q 040597 227 ----QSLMSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 227 ----~~l~~~l~~~L~~kr~LlVLDdv 249 (515)
-.+.+.++. +++..||++||+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122333333 589999999998
No 449
>PLN02200 adenylate kinase family protein
Probab=94.17 E-value=0.043 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 450
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.13 E-value=0.039 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..|.|+|+.|+||||+|+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999886
No 451
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.13 E-value=0.042 Score=61.80 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=72.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhccc---ceeeEEEeCCccc----HH--HHHHHHHHHhcCCCCCcccHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFE----EI--RVAKAIIEGLGESASSLSEFQSLM 230 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~~----~~--~~~~~il~~l~~~~~~~~~~~~l~ 230 (515)
...-+.|+|.+|.||||..+.+.-. ...+++ +..+++.+..... .. .+..-+...+...... ....
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~-~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~----~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALW-LAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA----KQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHH-hccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc----chhh
Confidence 3447899999999999999877542 112222 3344444331110 11 2222222222222211 1122
Q ss_pred HHHHHHhcCCcEEEEecccCCCCccc----ccchhhhcccCCCCcEEEEEcccHHHHhhhCCcceeeccCCChhhhH
Q 040597 231 SHIHRSIEGKKFFLLLDDVWDGDYNK----WEPFFFCVKNGLHGSKILVTTRNESVARMMGSTNIIFIEQLTEEECW 303 (515)
Q Consensus 231 ~~l~~~L~~kr~LlVLDdvw~~~~~~----~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~~a~ 303 (515)
....++++..++++.+|.++...... ...+...++. -+.+.+|+|+|....-........+++..+.++...
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 22356778899999999986532211 1123333333 347789999997654433333445556666655444
No 452
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.11 E-value=0.16 Score=53.38 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++|......++.+.+..-. .....|.|+|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~---~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS---RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh---ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 357888888777776664332 23456889999999999999998874
No 453
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.10 E-value=0.099 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+...|+|+|.+|+|||||.+.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999988875
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.10 E-value=0.11 Score=54.51 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=51.3
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEE-EeCCcccHHHHHHHHHHHhcC-----C
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWV-CVSDTFEEIRVAKAIIEGLGE-----S 219 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-~~~~~~~~~~~~~~il~~l~~-----~ 219 (515)
++++.|..- ..-.-..|+|++|+|||||++.+.+. ..+.+-++.++| -+.+...... ++-..+.. .
T Consensus 405 RvIDll~PI----GkGQR~LIvgpp~aGKTtLL~~IAn~-i~~n~~~~~~ivvLIgERpeEVt---dm~rsVkgeVVasT 476 (672)
T PRK12678 405 RVIDLIMPI----GKGQRGLIVSPPKAGKTTILQNIANA-ITTNNPECHLMVVLVDERPEEVT---DMQRSVKGEVIAST 476 (672)
T ss_pred eeeeeeccc----ccCCEeEEeCCCCCCHHHHHHHHHHH-HhhcCCCeEEEEEEEeCchhhHH---HHHHhccceEEEEC
Confidence 355555432 23356789999999999999998873 112233444444 3444332221 22222211 1
Q ss_pred CCCcc----cHHHHHHHHHHHh--cCCcEEEEeccc
Q 040597 220 ASSLS----EFQSLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 220 ~~~~~----~~~~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
.+... ....+.-.+.+++ .++.+||++|++
T Consensus 477 ~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 477 FDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11111 1122233344444 688999999998
No 455
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.4 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-.+++|+|+.|+|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 456
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.05 E-value=0.27 Score=50.48 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=49.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH-HHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-..++|+|..|+|||||++.+++.. ..+.++++-+.+.... .++..+.+..-+.. ..+.... .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999888632 2244555666554433 34444444332111 1111111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233444 589999999998
No 457
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.03 E-value=0.089 Score=51.76 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
+++.+.|-||+||||+|....-. ....=..+.-++.....++..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHH
Confidence 57899999999999999666542 2222123444555444444333
No 458
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.03 E-value=0.041 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-|.++||.|+||||+.+.+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3588999999999999999986
No 459
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.03 E-value=0.046 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++++|+++|..|+|||||..++.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999998886
No 460
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.02 E-value=0.21 Score=51.23 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-ccHHHHHHHHHHHhcCC-------CCCcccHHH---
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGES-------ASSLSEFQS--- 228 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 228 (515)
.-..++|+|..|+|||||++.+.+.. +.+..++..+... ....+++.+....-... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34588999999999999999888632 2344455555443 33335555443211000 011111111
Q ss_pred --HHHHHHHHh--cCCcEEEEeccc
Q 040597 229 --LMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 229 --l~~~l~~~L--~~kr~LlVLDdv 249 (515)
..-.+.+++ ++++.||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122233333 588999999999
No 461
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.048 Score=48.55 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-..+.|.|++|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999985
No 462
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.00 E-value=0.081 Score=46.45 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=28.6
Q ss_pred chHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 142 DEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 142 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+.++++.+.|. + ++++++|..|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~-------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK-------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT-------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc-------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45667777774 2 68999999999999999998875
No 463
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.99 E-value=0.34 Score=43.82 Aligned_cols=25 Identities=40% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....++.|.|.+|+||||+|+.+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998886
No 464
>PRK08356 hypothetical protein; Provisional
Probab=93.99 E-value=0.051 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.1
Q ss_pred cEEEEEEecCCCcHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLA 181 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v 181 (515)
..+|+|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 367999999999999999988
No 465
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.94 E-value=0.097 Score=48.94 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcchh-----hhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDE-----VKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
+..|+|++|.|||+++..+..... ....-...+-++......+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987766655210 1123334444444444444444444443
No 466
>PRK13946 shikimate kinase; Provisional
Probab=93.93 E-value=0.041 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 467
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.91 E-value=0.3 Score=50.72 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=50.7
Q ss_pred EEEEEEecCCCcHHHHH-HHHhcchhh-----hcccceeeEEEeCCcccHHHHHHHHHHHhcC-C--------CCCccc-
Q 040597 162 HVISLVGLGGIGKTTLA-QLAYNNDEV-----KRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE-S--------ASSLSE- 225 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-~--------~~~~~~- 225 (515)
.-++|.|..|+|||+|| ..+.+...+ ..+-..++++.+.+..+...-+.+.+..-+. . ..+...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46889999999999997 556664322 1233567888888866544434444444331 1 111111
Q ss_pred -------HHHHHHHHHHHhcCCcEEEEeccc
Q 040597 226 -------FQSLMSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 226 -------~~~l~~~l~~~L~~kr~LlVLDdv 249 (515)
.-.+.+.+++ +++..|+|+||+
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 1122333332 589999999998
No 468
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.90 E-value=0.38 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..++|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998864
No 469
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.88 E-value=0.091 Score=56.75 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.++.++.+...+... +.+.|+|.+|+||||+|+.+.+. -...+++..+|+.-+. .+...+++.+..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~-------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np~-~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR-------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNPE-DPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC-------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCCC-cchHHHHHHHHH
Confidence 46788877777776655422 36889999999999999998873 2233457778876543 355566666665
Q ss_pred Hhc
Q 040597 215 GLG 217 (515)
Q Consensus 215 ~l~ 217 (515)
.++
T Consensus 102 ~~G 104 (637)
T PRK13765 102 GKG 104 (637)
T ss_pred hcC
Confidence 444
No 470
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.88 E-value=0.041 Score=48.70 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.7
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|+|+|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998886
No 471
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.87 E-value=0.071 Score=52.56 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=41.4
Q ss_pred cCccccccchHHHHHHHHhccCC-CCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 134 EGEVFSGVDEKNELLNKLLCESS-EQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+..++|.++.++++++.+..... .+..-+++.+.|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999998875432 135678999999999999999988876
No 472
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.86 E-value=0.26 Score=51.74 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.++|......++...+.... .....+.|.|..|+||+++|+.+.... .......+-+++..- ....+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l-- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS---RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL-- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh---CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh--
Confidence 46777666667766665421 223457899999999999999988631 111222233343332 223333222
Q ss_pred hcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEcccH
Q 040597 216 LGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTTRNE 280 (515)
Q Consensus 216 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 280 (515)
++.......... .......-....-.|+||++..........+...+..+. .+.+||+||...
T Consensus 206 fg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 FGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred cCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 121100000000 000000112223458899997766656666666554321 145788888643
No 473
>PLN02796 D-glycerate 3-kinase
Probab=93.85 E-value=0.34 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+-+|+|.|..|+|||||++.+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3567899999999999999998886
No 474
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.84 E-value=0.38 Score=51.14 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=52.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC---------------CCCc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES---------------ASSL 223 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~~ 223 (515)
+.-.++.|.|.+|+|||++|.++..+ ....-..++|++.... ...+.+.+ ..++.+ .+..
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 34568889999999999999888763 3334467888887664 33443332 233211 1112
Q ss_pred ccHHHHHHHHHHHhcC-CcEEEEeccc
Q 040597 224 SEFQSLMSHIHRSIEG-KKFFLLLDDV 249 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~~-kr~LlVLDdv 249 (515)
...+.....+.+.+.. +.-++|+|.+
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 2344555556555533 4458999987
No 475
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.16 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+.-
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHC
Confidence 35899999999999999999875
No 476
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.80 E-value=0.33 Score=46.54 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=68.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
-+.+.++|+.|+|||+-++.+++. .+..+.+..+..++...+...+......... .........+...+.+.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccC
Confidence 348899999999999999988873 2223334566666666666666655544332 23444556666667888
Q ss_pred cEEEEecccCCCCcccccchhhhcccCC
Q 040597 241 KFFLLLDDVWDGDYNKWEPFFFCVKNGL 268 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~l~~~l~~~~ 268 (515)
.=+++.|+........++.++......+
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhC
Confidence 8899999987776667777776655443
No 477
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.79 E-value=0.17 Score=52.06 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc-HHHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-.-++|.|.+|+|||+|+..+..+.. +.+-+.++|+-+.+... ..++++.+...-... ..+.... .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999988877522 23346778887776543 445555554431111 1111111 1
Q ss_pred HHHHHHHHHh---cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223344554 468999999998
No 478
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.78 E-value=0.069 Score=50.48 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=20.5
Q ss_pred EEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC
Q 040597 166 LVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 200 (515)
Q Consensus 166 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 200 (515)
|+|++|+||||+++.+.+.. ...-..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcc
Confidence 68999999999999888742 2222334455543
No 479
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.78 E-value=0.3 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-..++|+|+.|.|||||++.+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998854
No 480
>PRK04182 cytidylate kinase; Provisional
Probab=93.78 E-value=0.05 Score=48.87 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 481
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.78 E-value=0.34 Score=52.55 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..++|+|..|.|||||++.+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999998864
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.24 Score=50.81 Aligned_cols=87 Identities=22% Similarity=0.215 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC-------CCCccc-----HH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES-------ASSLSE-----FQ 227 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~-----~~ 227 (515)
.-..++|+|..|.|||||++.++.... ....++.+.-.......+++...+..-+.. ..+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 345789999999999999998887422 112233322223345556655555442211 011111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
.....+.+++ +++..||++||+
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecch
Confidence 1222333333 588999999998
No 483
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.76 E-value=0.33 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..++|+|..|+|||||++.+..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998854
No 484
>PRK13768 GTPase; Provisional
Probab=93.76 E-value=0.093 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++.|.|+||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35789999999999999987765
No 485
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.75 E-value=0.28 Score=50.16 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=46.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-ccHHHHHHHHHHHhcCC-------CCCcccH-----H
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGES-------ASSLSEF-----Q 227 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~-----~ 227 (515)
-..++|+|..|+|||||.+.+.... ..+..+...+... -...++...+...-... ..+.... .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999998888632 1233344445443 23444444443321110 1111111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122233333 588999999998
No 486
>PRK06761 hypothetical protein; Provisional
Probab=93.74 E-value=0.089 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
++|.|.|++|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999974
No 487
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.74 E-value=0.098 Score=48.87 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---Ccc----cHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---SLS----EFQSLMSH 232 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~----~~~~l~~~ 232 (515)
...++.|.|+.|.||||+.+.+.-.. +..+-.+..|-. . .. ...+.+|+..++..+. ..+ +..++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~--~-~~-~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPAS--S-AT-LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcC--c-eE-EeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998887531 111111222211 0 00 0111122222221111 111 22222233
Q ss_pred HHHHhcCCcEEEEecccCCCCc----cc-ccchhhhcccCCCCcEEEEEcccHHHHhhh
Q 040597 233 IHRSIEGKKFFLLLDDVWDGDY----NK-WEPFFFCVKNGLHGSKILVTTRNESVARMM 286 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdvw~~~~----~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 286 (515)
+.. .+++-|++||..-.... .. -..+...+... .++.+|++|.+..++...
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 322 35789999999743221 11 11222233322 477899999998876654
No 488
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.73 E-value=0.58 Score=49.59 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=68.3
Q ss_pred cEEEEEEecCCCcHHH-HHHHHhcchhhhcccceeeEEEeCCcc--cHHHHHHHHHHHhcCCCC----------C-----
Q 040597 161 LHVISLVGLGGIGKTT-LAQLAYNNDEVKRNFEKVIWVCVSDTF--EEIRVAKAIIEGLGESAS----------S----- 222 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~----------~----- 222 (515)
..||.|+|..|+|||| |++.+|.+ .|...--|.+.++- ....+.+.+.+.++..-. +
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4699999999999987 55777764 33222245555544 344566777777744311 0
Q ss_pred -----cccHHHHHHHHHHHhcCCcEEEEecccCCCCcc---cccchhhhcccCCCCcEEEEEccc---HHHHhhhCC
Q 040597 223 -----LSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN---KWEPFFFCVKNGLHGSKILVTTRN---ESVARMMGS 288 (515)
Q Consensus 223 -----~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~---~~~~l~~~l~~~~~gs~IivTTR~---~~v~~~~~~ 288 (515)
..+---+.+.|.+..-+|=-.||+|.++..+.. .+..++..+. ....-++||||-. +..+..++.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm~a~kf~nfFgn 521 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATMDAQKFSNFFGN 521 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeeccccHHHHHHHhCC
Confidence 011122334444444456668999999754321 1222233332 2347799999864 344555553
No 489
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.70 E-value=0.13 Score=54.52 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=36.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+++|....+.++.+.+..-. ....-|.|.|..|+||+.+|+.+++.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A---~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA---RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 58999888888887775332 23457889999999999999999863
No 490
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.70 E-value=0.33 Score=40.73 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=24.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
.+.|.|..|.|||+.+..+............++|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999977766422222344555654
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.69 E-value=0.3 Score=52.84 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-..++|+|+.|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998865
No 492
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.69 E-value=0.066 Score=53.37 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=36.3
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+-+.++|-++-+..|...+. ++...-|.|.|..|+||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~-----~p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI-----DPKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc-----CCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34578998887777777665 34556677999999999999998875
No 493
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.69 E-value=0.4 Score=45.48 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccce--eeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK--VIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHR 235 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~ 235 (515)
...+-+|+|.|..|+||+|+|+.+.. .....++. +--|+...-.-....+.+---.-....+..-+...+.+.+..
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~--ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQA--LLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHH--HHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 46788999999999999999988876 45555544 333433332122222221100001123344556666665555
Q ss_pred HhcCC
Q 040597 236 SIEGK 240 (515)
Q Consensus 236 ~L~~k 240 (515)
.-+++
T Consensus 157 vK~~~ 161 (283)
T COG1072 157 VKAGK 161 (283)
T ss_pred HhcCC
Confidence 43333
No 494
>PRK14532 adenylate kinase; Provisional
Probab=93.69 E-value=0.048 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 495
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.68 E-value=0.083 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+..+|+|.|..|+||||||+.+..
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 34678999999999999999998876
No 496
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.68 E-value=0.24 Score=51.05 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES-------ASSLSEFQ----- 227 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-------~~~~~~~~----- 227 (515)
.-..++|.|..|+|||||++.+...... -.++++..-.......++.+.+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 3468899999999999999988864221 12344444333444555555554332111 11111111
Q ss_pred HHHHHHHHHh--cCCcEEEEeccc
Q 040597 228 SLMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 228 ~l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...-.+.+++ +++..||++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233443 588999999998
No 497
>PRK15115 response regulator GlrR; Provisional
Probab=93.66 E-value=0.29 Score=51.11 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.++|....+.++.+....-. .....|.|.|.+|+|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46777666666666544321 22345779999999999999998873
No 498
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.66 E-value=0.05 Score=50.61 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.-|+|+|++|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999998876
No 499
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.64 E-value=0.059 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999987764
No 500
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.62 E-value=0.07 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999998853
Done!