Query 040597
Match_columns 515
No_of_seqs 400 out of 3071
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-47 6E-52 406.6 22.6 299 136-453 129-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-36 1.5E-40 349.3 24.1 301 132-453 121-451 (1249)
3 1vt4_I APAF-1 related killer D 100.0 7.7E-36 2.6E-40 323.0 15.6 264 136-448 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.5E-33 1.5E-37 299.4 23.3 296 132-450 121-448 (591)
5 1w5s_A Origin recognition comp 99.7 1.5E-15 5.2E-20 155.2 18.0 210 134-345 21-267 (412)
6 2qen_A Walker-type ATPase; unk 99.7 7.2E-16 2.5E-20 153.9 15.2 197 132-347 9-249 (350)
7 2fna_A Conserved hypothetical 99.6 6.6E-15 2.3E-19 147.2 17.9 194 133-348 11-254 (357)
8 2qby_B CDC6 homolog 3, cell di 99.5 7.6E-13 2.6E-17 133.8 17.6 277 135-428 20-341 (384)
9 1fnn_A CDC6P, cell division co 99.4 9.1E-12 3.1E-16 126.0 21.5 206 135-344 17-247 (389)
10 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.7E-16 116.4 16.2 196 135-345 23-229 (250)
11 2qby_A CDC6 homolog 1, cell di 99.3 4.2E-12 1.4E-16 128.2 12.1 204 134-342 19-243 (386)
12 2v1u_A Cell division control p 99.3 2.4E-11 8.2E-16 122.7 16.2 198 135-339 19-244 (387)
13 2chg_A Replication factor C sm 99.3 4.4E-11 1.5E-15 110.6 16.6 183 135-343 17-203 (226)
14 1sxj_B Activator 1 37 kDa subu 99.2 4.1E-10 1.4E-14 110.7 15.1 184 135-344 21-210 (323)
15 1hqc_A RUVB; extended AAA-ATPa 99.1 1E-10 3.6E-15 115.2 7.7 180 135-345 12-212 (324)
16 1iqp_A RFCS; clamp loader, ext 99.0 3.9E-09 1.3E-13 103.8 13.2 181 135-343 25-211 (327)
17 3qfl_A MLA10; coiled-coil, (CC 98.9 1.3E-10 4.4E-15 95.4 -1.5 59 2-60 19-83 (115)
18 3te6_A Regulatory protein SIR3 98.8 2E-08 7E-13 97.5 12.6 171 136-311 21-212 (318)
19 1jr3_A DNA polymerase III subu 98.8 3.3E-08 1.1E-12 99.1 13.3 195 135-344 16-221 (373)
20 2chq_A Replication factor C sm 98.8 2.9E-08 1E-12 97.1 11.6 180 135-342 17-202 (319)
21 1jbk_A CLPB protein; beta barr 98.8 5.8E-08 2E-12 87.1 12.2 45 135-184 22-66 (195)
22 3bos_A Putative DNA replicatio 98.6 7E-08 2.4E-12 90.2 8.5 154 160-344 51-217 (242)
23 1sxj_D Activator 1 41 kDa subu 98.6 6.2E-07 2.1E-11 89.0 14.0 194 135-343 37-234 (353)
24 3pvs_A Replication-associated 98.5 9.3E-07 3.2E-11 90.5 14.3 177 135-342 26-213 (447)
25 1a5t_A Delta prime, HOLB; zinc 98.5 3.7E-06 1.3E-10 82.8 16.4 170 142-344 9-205 (334)
26 3h4m_A Proteasome-activating n 98.4 3.3E-06 1.1E-10 81.1 14.9 184 134-342 16-229 (285)
27 2z4s_A Chromosomal replication 98.4 3.5E-06 1.2E-10 86.2 15.3 161 161-342 130-304 (440)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.6E-06 1.6E-10 78.9 15.0 181 135-338 6-215 (262)
29 3uk6_A RUVB-like 2; hexameric 98.4 3.6E-06 1.2E-10 84.0 14.8 198 135-343 44-302 (368)
30 3pfi_A Holliday junction ATP-d 98.4 1.3E-06 4.3E-11 86.3 11.1 177 135-343 29-226 (338)
31 1sxj_E Activator 1 40 kDa subu 98.4 6.4E-07 2.2E-11 89.0 8.3 193 135-343 14-236 (354)
32 2p65_A Hypothetical protein PF 98.4 8.2E-07 2.8E-11 79.1 8.0 45 135-184 22-66 (187)
33 3u61_B DNA polymerase accessor 98.3 2.8E-06 9.4E-11 83.4 12.2 177 135-340 26-212 (324)
34 1d2n_A N-ethylmaleimide-sensit 98.3 8.8E-06 3E-10 77.6 14.4 172 136-337 34-230 (272)
35 1sxj_A Activator 1 95 kDa subu 98.3 4.3E-06 1.5E-10 87.5 12.7 196 135-344 39-253 (516)
36 3syl_A Protein CBBX; photosynt 98.3 7.5E-06 2.6E-10 79.6 13.5 160 136-311 32-218 (309)
37 1sxj_C Activator 1 40 kDa subu 98.3 1E-05 3.4E-10 80.0 14.0 173 135-339 25-207 (340)
38 1l8q_A Chromosomal replication 98.2 1.8E-05 6.2E-10 77.5 14.1 155 160-338 36-202 (324)
39 3n70_A Transport activator; si 98.2 1.6E-06 5.6E-11 74.3 5.3 114 136-279 2-115 (145)
40 2gno_A DNA polymerase III, gam 98.1 1.5E-05 5.2E-10 77.2 12.3 147 141-310 3-152 (305)
41 3eie_A Vacuolar protein sortin 98.1 3.6E-05 1.2E-09 75.3 15.1 183 135-344 18-228 (322)
42 3ec2_A DNA replication protein 98.1 5.3E-06 1.8E-10 73.8 8.0 102 161-279 38-142 (180)
43 1qvr_A CLPB protein; coiled co 98.1 7.6E-06 2.6E-10 90.9 10.5 152 135-309 170-344 (854)
44 2w58_A DNAI, primosome compone 98.1 5E-06 1.7E-10 75.4 7.4 100 162-279 55-158 (202)
45 2qp9_X Vacuolar protein sortin 98.1 6.8E-05 2.3E-09 74.4 15.7 184 135-344 51-261 (355)
46 3b9p_A CG5977-PA, isoform A; A 98.1 0.00012 4.1E-09 70.5 17.1 182 135-343 21-232 (297)
47 3d8b_A Fidgetin-like protein 1 98.1 2.9E-05 1E-09 77.1 12.6 185 135-344 84-295 (357)
48 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00012 4.2E-09 71.4 16.5 184 135-344 12-223 (322)
49 4fcw_A Chaperone protein CLPB; 98.0 2.9E-05 9.8E-10 75.4 11.2 121 136-265 18-144 (311)
50 3pxg_A Negative regulator of g 98.0 3.2E-05 1.1E-09 79.7 11.8 147 135-310 180-338 (468)
51 2zan_A Vacuolar protein sortin 97.9 0.0003 1E-08 71.9 17.2 186 135-343 134-344 (444)
52 3co5_A Putative two-component 97.9 6.8E-06 2.3E-10 70.2 4.1 110 136-279 5-115 (143)
53 3cf0_A Transitional endoplasmi 97.9 0.00026 8.8E-09 68.4 15.8 180 135-339 15-223 (301)
54 3vfd_A Spastin; ATPase, microt 97.9 0.00016 5.5E-09 72.6 14.4 185 135-343 115-325 (389)
55 2bjv_A PSP operon transcriptio 97.8 7.5E-05 2.6E-09 70.7 10.3 46 136-184 7-52 (265)
56 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00018 6E-09 79.0 14.0 153 135-310 186-362 (758)
57 2c9o_A RUVB-like 1; hexameric 97.8 0.00014 4.6E-09 74.8 11.8 97 242-343 297-409 (456)
58 1ojl_A Transcriptional regulat 97.7 6E-05 2.1E-09 73.0 8.5 46 135-183 2-47 (304)
59 1ofh_A ATP-dependent HSL prote 97.7 0.00026 8.8E-09 68.4 12.6 49 135-183 15-72 (310)
60 2kjq_A DNAA-related protein; s 97.7 2.5E-05 8.6E-10 67.1 4.7 87 161-279 36-124 (149)
61 4b4t_J 26S protease regulatory 97.7 0.0011 3.7E-08 66.0 16.9 177 135-337 148-354 (405)
62 3pxi_A Negative regulator of g 97.7 0.00016 5.6E-09 79.2 11.8 147 135-310 180-338 (758)
63 4b4t_L 26S protease subunit RP 97.6 0.00097 3.3E-08 67.3 15.8 176 136-337 182-387 (437)
64 4b4t_K 26S protease regulatory 97.6 0.00071 2.4E-08 68.2 14.7 49 135-183 172-228 (428)
65 3pxi_A Negative regulator of g 97.6 6.1E-05 2.1E-09 82.6 7.1 155 135-310 491-675 (758)
66 3hu3_A Transitional endoplasmi 97.6 0.00042 1.4E-08 71.5 12.8 177 135-336 204-406 (489)
67 1in4_A RUVB, holliday junction 97.6 0.00028 9.5E-09 69.3 10.9 177 135-343 25-222 (334)
68 1lv7_A FTSH; alpha/beta domain 97.6 0.00092 3.2E-08 62.8 13.7 156 135-310 12-195 (257)
69 4b4t_H 26S protease regulatory 97.5 0.0022 7.5E-08 64.8 16.5 176 136-337 210-415 (467)
70 2ce7_A Cell division protein F 97.5 0.0012 4.1E-08 67.6 14.1 178 135-337 16-221 (476)
71 4b4t_M 26S protease regulatory 97.5 0.00054 1.8E-08 69.1 10.8 177 135-337 181-387 (434)
72 4b4t_I 26S protease regulatory 97.5 0.0017 5.9E-08 64.8 14.3 176 136-337 183-388 (437)
73 3cf2_A TER ATPase, transitiona 97.4 0.0013 4.3E-08 71.5 13.2 179 136-339 205-409 (806)
74 2r62_A Cell division protease 97.4 0.00014 4.7E-09 69.0 5.1 49 135-183 11-66 (268)
75 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00044 1.5E-08 75.8 9.3 118 135-265 458-582 (758)
76 1qvr_A CLPB protein; coiled co 97.3 0.0007 2.4E-08 75.2 10.1 134 136-279 559-710 (854)
77 3t15_A Ribulose bisphosphate c 97.2 0.0022 7.6E-08 61.5 12.1 26 159-184 34-59 (293)
78 2qgz_A Helicase loader, putati 97.2 0.00027 9.3E-09 68.5 5.5 37 161-199 152-189 (308)
79 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00023 8E-09 68.4 4.5 68 161-250 123-192 (331)
80 2cvh_A DNA repair and recombin 97.2 0.002 6.9E-08 58.6 10.3 86 160-251 19-116 (220)
81 3m6a_A ATP-dependent protease 97.1 0.0018 6.2E-08 67.8 10.3 161 135-310 81-266 (543)
82 2r44_A Uncharacterized protein 97.1 0.00069 2.4E-08 66.3 6.8 152 135-311 27-199 (331)
83 2b8t_A Thymidine kinase; deoxy 96.9 0.001 3.4E-08 61.0 5.4 112 160-279 11-125 (223)
84 3hr8_A Protein RECA; alpha and 96.8 0.004 1.4E-07 61.2 9.5 85 159-250 59-149 (356)
85 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0037 1.3E-07 57.3 8.9 115 161-280 23-168 (235)
86 1jr3_D DNA polymerase III, del 96.8 0.016 5.5E-07 56.7 13.7 157 160-342 17-183 (343)
87 1ypw_A Transitional endoplasmi 96.7 0.0046 1.6E-07 67.9 10.1 156 135-310 204-385 (806)
88 2x8a_A Nuclear valosin-contain 96.7 0.014 4.8E-07 55.3 11.9 126 164-310 47-191 (274)
89 1n0w_A DNA repair protein RAD5 96.7 0.0049 1.7E-07 57.0 8.5 90 160-250 23-129 (243)
90 3io5_A Recombination and repai 96.6 0.0075 2.6E-07 57.8 9.6 81 163-250 30-121 (333)
91 1um8_A ATP-dependent CLP prote 96.6 0.0075 2.6E-07 60.0 10.2 23 161-183 72-94 (376)
92 1v5w_A DMC1, meiotic recombina 96.6 0.013 4.4E-07 57.5 11.5 90 159-249 120-228 (343)
93 1ye8_A Protein THEP1, hypothet 96.6 0.013 4.4E-07 51.6 10.4 22 163-184 2-23 (178)
94 1g5t_A COB(I)alamin adenosyltr 96.6 0.0024 8.3E-08 56.8 5.6 117 162-280 29-163 (196)
95 1ixz_A ATP-dependent metallopr 96.5 0.0095 3.2E-07 55.6 9.6 21 164-184 52-72 (254)
96 2dhr_A FTSH; AAA+ protein, hex 96.5 0.012 4.1E-07 60.6 11.0 152 135-310 31-214 (499)
97 2i1q_A DNA repair and recombin 96.5 0.0066 2.2E-07 59.0 8.6 90 159-249 96-213 (322)
98 2z43_A DNA repair and recombin 96.5 0.0078 2.7E-07 58.6 9.1 89 160-249 106-212 (324)
99 2zr9_A Protein RECA, recombina 96.4 0.011 3.6E-07 58.2 9.5 84 160-250 60-149 (349)
100 1xp8_A RECA protein, recombina 96.3 0.013 4.3E-07 58.0 9.5 84 160-250 73-162 (366)
101 1rz3_A Hypothetical protein rb 96.3 0.0041 1.4E-07 55.9 5.4 42 140-183 3-44 (201)
102 1u94_A RECA protein, recombina 96.3 0.011 3.8E-07 58.1 8.7 84 160-250 62-151 (356)
103 1cr0_A DNA primase/helicase; R 96.2 0.016 5.6E-07 55.4 9.3 39 160-200 34-73 (296)
104 3tqc_A Pantothenate kinase; bi 96.0 0.019 6.4E-07 55.5 8.5 46 137-183 69-114 (321)
105 2px0_A Flagellar biosynthesis 95.9 0.02 6.8E-07 54.8 8.5 87 160-249 104-191 (296)
106 1gvn_B Zeta; postsegregational 95.9 0.0073 2.5E-07 57.7 5.3 40 144-183 16-55 (287)
107 3bh0_A DNAB-like replicative h 95.9 0.024 8.3E-07 54.8 9.0 52 160-215 67-118 (315)
108 2pze_A Cystic fibrosis transme 95.9 0.077 2.6E-06 48.6 11.8 23 161-183 34-56 (229)
109 1odf_A YGR205W, hypothetical 3 95.8 0.063 2.2E-06 51.1 11.6 82 158-239 28-117 (290)
110 1vma_A Cell division protein F 95.8 0.043 1.5E-06 52.7 10.2 88 159-249 102-195 (306)
111 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 53.8 2.9 20 162-181 2-21 (179)
112 4a74_A DNA repair and recombin 95.8 0.036 1.2E-06 50.5 9.2 45 160-204 24-72 (231)
113 3c8u_A Fructokinase; YP_612366 95.8 0.0078 2.7E-07 54.4 4.6 37 144-183 8-44 (208)
114 4a1f_A DNAB helicase, replicat 95.7 0.034 1.2E-06 54.1 9.1 53 160-216 45-97 (338)
115 1qhx_A CPT, protein (chloramph 95.7 0.0051 1.7E-07 53.9 2.9 22 162-183 4-25 (178)
116 1zp6_A Hypothetical protein AT 95.7 0.0073 2.5E-07 53.5 3.9 24 160-183 8-31 (191)
117 2orw_A Thymidine kinase; TMTK, 95.7 0.0027 9.3E-08 56.3 1.0 22 162-183 4-25 (184)
118 1ly1_A Polynucleotide kinase; 95.6 0.0063 2.2E-07 53.3 3.4 22 162-183 3-24 (181)
119 3lda_A DNA repair protein RAD5 95.6 0.046 1.6E-06 54.6 10.0 90 160-250 177-283 (400)
120 3kb2_A SPBC2 prophage-derived 95.6 0.0056 1.9E-07 53.2 2.9 22 162-183 2-23 (173)
121 2p5t_B PEZT; postsegregational 95.6 0.009 3.1E-07 55.9 4.5 40 144-183 15-54 (253)
122 1pzn_A RAD51, DNA repair and r 95.6 0.047 1.6E-06 53.5 9.9 91 159-250 129-241 (349)
123 3vaa_A Shikimate kinase, SK; s 95.5 0.0069 2.4E-07 54.3 3.1 23 161-183 25-47 (199)
124 1sky_E F1-ATPase, F1-ATP synth 95.4 0.037 1.3E-06 56.0 8.5 98 147-249 141-254 (473)
125 2rhm_A Putative kinase; P-loop 95.4 0.0094 3.2E-07 52.8 3.8 24 160-183 4-27 (193)
126 3ice_A Transcription terminati 95.3 0.014 4.9E-07 57.3 5.0 52 146-204 163-217 (422)
127 1nks_A Adenylate kinase; therm 95.3 0.0097 3.3E-07 52.7 3.5 22 162-183 2-23 (194)
128 3uie_A Adenylyl-sulfate kinase 95.3 0.01 3.4E-07 53.3 3.6 24 160-183 24-47 (200)
129 1kgd_A CASK, peripheral plasma 95.3 0.0082 2.8E-07 52.9 2.9 23 161-183 5-27 (180)
130 3trf_A Shikimate kinase, SK; a 95.3 0.0084 2.9E-07 52.8 2.9 23 161-183 5-27 (185)
131 1kag_A SKI, shikimate kinase I 95.2 0.0078 2.7E-07 52.4 2.6 22 162-183 5-26 (173)
132 2ffh_A Protein (FFH); SRP54, s 95.2 0.093 3.2E-06 52.7 10.6 24 160-183 97-120 (425)
133 1knq_A Gluconate kinase; ALFA/ 95.1 0.014 4.7E-07 51.0 3.9 24 160-183 7-30 (175)
134 3kl4_A SRP54, signal recogniti 95.1 0.09 3.1E-06 52.9 10.1 24 160-183 96-119 (433)
135 3t61_A Gluconokinase; PSI-biol 95.1 0.0089 3E-07 53.6 2.5 23 161-183 18-40 (202)
136 1uj2_A Uridine-cytidine kinase 95.1 0.012 4.2E-07 54.8 3.5 25 159-183 20-44 (252)
137 3hws_A ATP-dependent CLP prote 95.0 0.016 5.4E-07 57.3 4.4 48 136-183 16-73 (363)
138 1uf9_A TT1252 protein; P-loop, 95.0 0.014 5E-07 52.0 3.8 25 159-183 6-30 (203)
139 1kht_A Adenylate kinase; phosp 95.0 0.012 4E-07 52.0 3.1 22 162-183 4-25 (192)
140 3tau_A Guanylate kinase, GMP k 95.0 0.012 4.1E-07 53.1 3.2 24 160-183 7-30 (208)
141 3upu_A ATP-dependent DNA helic 95.0 0.038 1.3E-06 56.5 7.4 22 163-184 47-68 (459)
142 4eun_A Thermoresistant glucoki 95.0 0.012 4E-07 52.8 3.1 24 160-183 28-51 (200)
143 2c95_A Adenylate kinase 1; tra 95.0 0.013 4.4E-07 52.0 3.4 23 161-183 9-31 (196)
144 1ukz_A Uridylate kinase; trans 95.0 0.015 5.3E-07 52.0 3.9 25 159-183 13-37 (203)
145 1tev_A UMP-CMP kinase; ploop, 95.0 0.013 4.5E-07 51.9 3.4 23 161-183 3-25 (196)
146 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.016 5.4E-07 59.8 4.3 42 136-184 23-64 (500)
147 2qt1_A Nicotinamide riboside k 95.0 0.016 5.6E-07 52.1 3.9 25 159-183 19-43 (207)
148 2xxa_A Signal recognition part 94.9 0.17 5.7E-06 51.1 11.7 25 159-183 98-122 (433)
149 4gp7_A Metallophosphoesterase; 94.9 0.013 4.6E-07 51.0 3.1 24 160-183 8-31 (171)
150 3asz_A Uridine kinase; cytidin 94.9 0.016 5.5E-07 52.3 3.7 24 160-183 5-28 (211)
151 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.6E-07 52.4 3.2 22 162-183 8-29 (205)
152 1y63_A LMAJ004144AAA protein; 94.9 0.015 5.2E-07 51.3 3.5 24 160-183 9-32 (184)
153 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5.1E-07 51.5 3.4 22 162-183 3-24 (189)
154 3iij_A Coilin-interacting nucl 94.9 0.011 3.7E-07 51.9 2.5 23 161-183 11-33 (180)
155 2ze6_A Isopentenyl transferase 94.9 0.014 4.8E-07 54.6 3.4 22 162-183 2-23 (253)
156 2qor_A Guanylate kinase; phosp 94.9 0.011 3.9E-07 53.1 2.6 24 160-183 11-34 (204)
157 1ex7_A Guanylate kinase; subst 94.9 0.01 3.4E-07 52.6 2.2 22 162-183 2-23 (186)
158 1zuh_A Shikimate kinase; alpha 94.8 0.013 4.5E-07 50.7 2.9 24 160-183 6-29 (168)
159 1qf9_A UMP/CMP kinase, protein 94.8 0.02 6.7E-07 50.6 4.1 24 160-183 5-28 (194)
160 2j41_A Guanylate kinase; GMP, 94.8 0.014 4.9E-07 52.3 3.2 23 161-183 6-28 (207)
161 2jaq_A Deoxyguanosine kinase; 94.8 0.014 4.8E-07 52.2 3.1 21 163-183 2-22 (205)
162 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.015 5.3E-07 54.5 3.5 23 161-183 4-26 (260)
163 3umf_A Adenylate kinase; rossm 94.8 0.017 6E-07 52.4 3.6 25 159-183 27-51 (217)
164 2ga8_A Hypothetical 39.9 kDa p 94.8 0.025 8.7E-07 55.1 4.9 41 142-183 6-46 (359)
165 3dm5_A SRP54, signal recogniti 94.8 0.11 3.8E-06 52.3 9.7 24 160-183 99-122 (443)
166 2cdn_A Adenylate kinase; phosp 94.8 0.017 5.9E-07 51.6 3.5 24 160-183 19-42 (201)
167 3cm0_A Adenylate kinase; ATP-b 94.7 0.017 5.8E-07 50.9 3.4 23 161-183 4-26 (186)
168 2if2_A Dephospho-COA kinase; a 94.7 0.016 5.6E-07 51.9 3.3 22 162-183 2-23 (204)
169 3a00_A Guanylate kinase, GMP k 94.7 0.012 4.2E-07 52.0 2.4 22 162-183 2-23 (186)
170 2plr_A DTMP kinase, probable t 94.7 0.018 6.1E-07 51.8 3.5 22 162-183 5-26 (213)
171 2bwj_A Adenylate kinase 5; pho 94.7 0.016 5.4E-07 51.6 3.1 23 161-183 12-34 (199)
172 2yvu_A Probable adenylyl-sulfa 94.7 0.021 7.1E-07 50.4 3.9 25 160-184 12-36 (186)
173 3tlx_A Adenylate kinase 2; str 94.7 0.024 8.3E-07 52.5 4.5 24 160-183 28-51 (243)
174 3e70_C DPA, signal recognition 94.7 0.15 5.1E-06 49.4 10.2 25 159-183 127-151 (328)
175 1jjv_A Dephospho-COA kinase; P 94.7 0.018 6.2E-07 51.7 3.5 22 162-183 3-24 (206)
176 2iyv_A Shikimate kinase, SK; t 94.7 0.012 4E-07 51.9 2.1 22 162-183 3-24 (184)
177 2z0h_A DTMP kinase, thymidylat 94.7 0.054 1.8E-06 48.0 6.6 21 163-183 2-22 (197)
178 1cke_A CK, MSSA, protein (cyti 94.7 0.016 5.6E-07 52.8 3.1 22 162-183 6-27 (227)
179 1j8m_F SRP54, signal recogniti 94.6 0.14 4.7E-06 48.9 9.7 87 161-249 98-189 (297)
180 1nn5_A Similar to deoxythymidy 94.6 0.055 1.9E-06 48.7 6.6 23 161-183 9-31 (215)
181 1g8p_A Magnesium-chelatase 38 94.6 0.015 5E-07 57.0 2.9 44 135-183 24-67 (350)
182 1via_A Shikimate kinase; struc 94.6 0.016 5.5E-07 50.6 2.9 21 163-183 6-26 (175)
183 2j37_W Signal recognition part 94.6 0.32 1.1E-05 49.9 12.9 25 159-183 99-123 (504)
184 3jvv_A Twitching mobility prot 94.6 0.017 5.8E-07 56.8 3.1 111 161-283 123-234 (356)
185 3hjn_A DTMP kinase, thymidylat 94.5 0.098 3.3E-06 46.7 7.9 49 163-213 2-50 (197)
186 1e6c_A Shikimate kinase; phosp 94.5 0.014 4.9E-07 50.6 2.3 22 162-183 3-24 (173)
187 2zts_A Putative uncharacterize 94.5 0.094 3.2E-06 48.2 8.1 50 160-212 29-78 (251)
188 2bbw_A Adenylate kinase 4, AK4 94.5 0.019 6.3E-07 53.4 3.1 23 161-183 27-49 (246)
189 3cmu_A Protein RECA, recombina 94.5 0.069 2.4E-06 63.3 8.4 85 159-250 1425-1515(2050)
190 1lvg_A Guanylate kinase, GMP k 94.5 0.016 5.3E-07 52.0 2.4 22 162-183 5-26 (198)
191 2pt5_A Shikimate kinase, SK; a 94.5 0.02 6.9E-07 49.4 3.1 21 163-183 2-22 (168)
192 2q6t_A DNAB replication FORK h 94.4 0.19 6.4E-06 51.0 10.8 54 160-216 199-252 (444)
193 2yhs_A FTSY, cell division pro 94.4 0.094 3.2E-06 53.5 8.3 43 159-204 291-333 (503)
194 2hf9_A Probable hydrogenase ni 94.4 0.031 1.1E-06 50.8 4.5 25 160-184 37-61 (226)
195 2vli_A Antibiotic resistance p 94.4 0.013 4.3E-07 51.5 1.7 23 161-183 5-27 (183)
196 1aky_A Adenylate kinase; ATP:A 94.4 0.02 6.8E-07 52.1 3.1 23 161-183 4-26 (220)
197 2pbr_A DTMP kinase, thymidylat 94.4 0.021 7.1E-07 50.5 3.1 21 163-183 2-22 (195)
198 1ls1_A Signal recognition part 94.4 0.2 6.7E-06 47.8 10.2 24 160-183 97-120 (295)
199 3ney_A 55 kDa erythrocyte memb 94.4 0.021 7.2E-07 51.0 3.1 24 160-183 18-41 (197)
200 1zu4_A FTSY; GTPase, signal re 94.4 0.15 5.2E-06 49.2 9.5 25 159-183 103-127 (320)
201 2wwf_A Thymidilate kinase, put 94.4 0.021 7.3E-07 51.3 3.2 23 161-183 10-32 (212)
202 3fwy_A Light-independent proto 94.4 0.023 7.9E-07 54.8 3.6 41 159-201 46-86 (314)
203 1xjc_A MOBB protein homolog; s 94.3 0.037 1.3E-06 48.0 4.5 24 160-183 3-26 (169)
204 1zd8_A GTP:AMP phosphotransfer 94.3 0.021 7.2E-07 52.2 3.1 23 161-183 7-29 (227)
205 2r6a_A DNAB helicase, replicat 94.3 0.13 4.3E-06 52.5 9.2 51 160-213 202-252 (454)
206 3aez_A Pantothenate kinase; tr 94.2 0.027 9.2E-07 54.3 3.7 25 159-183 88-112 (312)
207 2grj_A Dephospho-COA kinase; T 94.2 0.027 9.2E-07 50.2 3.4 25 159-183 10-34 (192)
208 2pez_A Bifunctional 3'-phospho 94.2 0.028 9.7E-07 49.2 3.5 24 160-183 4-27 (179)
209 1zak_A Adenylate kinase; ATP:A 94.2 0.022 7.4E-07 51.9 2.8 23 161-183 5-27 (222)
210 2r2a_A Uncharacterized protein 94.2 0.063 2.1E-06 48.0 5.8 22 161-182 5-26 (199)
211 1znw_A Guanylate kinase, GMP k 94.2 0.025 8.6E-07 50.9 3.2 23 161-183 20-42 (207)
212 2f6r_A COA synthase, bifunctio 94.2 0.031 1.1E-06 53.0 4.0 24 159-182 73-96 (281)
213 2jeo_A Uridine-cytidine kinase 94.2 0.029 1E-06 52.0 3.7 24 160-183 24-47 (245)
214 1gtv_A TMK, thymidylate kinase 94.2 0.015 5.1E-07 52.5 1.6 21 163-183 2-22 (214)
215 1q57_A DNA primase/helicase; d 94.1 0.18 6E-06 52.1 10.0 52 160-215 241-293 (503)
216 4edh_A DTMP kinase, thymidylat 94.1 0.2 7E-06 45.2 9.1 24 161-184 6-29 (213)
217 2v54_A DTMP kinase, thymidylat 94.1 0.026 8.8E-07 50.5 3.1 22 162-183 5-26 (204)
218 3llm_A ATP-dependent RNA helic 94.0 0.17 5.8E-06 46.3 8.7 100 144-251 66-187 (235)
219 1m7g_A Adenylylsulfate kinase; 94.0 0.032 1.1E-06 50.4 3.6 24 160-183 24-47 (211)
220 2wsm_A Hydrogenase expression/ 94.0 0.034 1.1E-06 50.4 3.8 25 160-184 29-53 (221)
221 3fb4_A Adenylate kinase; psych 94.0 0.027 9.4E-07 50.9 3.1 21 163-183 2-22 (216)
222 1rj9_A FTSY, signal recognitio 94.0 0.029 1E-06 53.9 3.4 24 160-183 101-124 (304)
223 1vht_A Dephospho-COA kinase; s 94.0 0.033 1.1E-06 50.5 3.6 23 161-183 4-26 (218)
224 4e22_A Cytidylate kinase; P-lo 94.0 0.028 9.5E-07 52.4 3.2 23 161-183 27-49 (252)
225 1sq5_A Pantothenate kinase; P- 94.0 0.062 2.1E-06 51.7 5.7 25 159-183 78-102 (308)
226 3bgw_A DNAB-like replicative h 93.9 0.16 5.3E-06 51.6 8.9 51 160-214 196-246 (444)
227 1z6g_A Guanylate kinase; struc 93.9 0.024 8.3E-07 51.6 2.6 23 161-183 23-45 (218)
228 3dl0_A Adenylate kinase; phosp 93.9 0.03 1E-06 50.7 3.1 21 163-183 2-22 (216)
229 2ck3_D ATP synthase subunit be 93.9 0.22 7.7E-06 50.3 9.6 65 146-215 142-207 (482)
230 1htw_A HI0065; nucleotide-bind 93.8 0.041 1.4E-06 47.3 3.7 24 160-183 32-55 (158)
231 1s96_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 50.7 3.1 24 160-183 15-38 (219)
232 3p32_A Probable GTPase RV1496/ 93.7 0.062 2.1E-06 52.8 5.4 37 144-183 65-101 (355)
233 1fx0_B ATP synthase beta chain 93.7 0.19 6.5E-06 51.0 8.9 65 146-215 154-219 (498)
234 3be4_A Adenylate kinase; malar 93.7 0.03 1E-06 50.8 2.8 22 162-183 6-27 (217)
235 2dr3_A UPF0273 protein PH0284; 93.6 0.068 2.3E-06 49.1 5.1 39 161-201 23-61 (247)
236 2ehv_A Hypothetical protein PH 93.6 0.036 1.2E-06 51.1 3.2 40 160-200 29-68 (251)
237 3ake_A Cytidylate kinase; CMP 93.4 0.04 1.4E-06 49.3 3.1 21 163-183 4-24 (208)
238 2f1r_A Molybdopterin-guanine d 93.4 0.025 8.4E-07 49.4 1.6 22 162-183 3-24 (171)
239 1e4v_A Adenylate kinase; trans 93.4 0.042 1.4E-06 49.6 3.3 21 163-183 2-22 (214)
240 3b9q_A Chloroplast SRP recepto 93.4 0.046 1.6E-06 52.4 3.7 24 160-183 99-122 (302)
241 3nwj_A ATSK2; P loop, shikimat 93.4 0.031 1.1E-06 52.0 2.4 22 162-183 49-70 (250)
242 4tmk_A Protein (thymidylate ki 93.4 0.39 1.3E-05 43.3 9.6 52 162-214 4-55 (213)
243 2xb4_A Adenylate kinase; ATP-b 93.3 0.042 1.4E-06 50.1 3.1 21 163-183 2-22 (223)
244 3sr0_A Adenylate kinase; phosp 93.3 0.044 1.5E-06 49.4 3.1 21 163-183 2-22 (206)
245 3a8t_A Adenylate isopentenyltr 93.3 0.051 1.7E-06 52.6 3.8 24 160-183 39-62 (339)
246 4eaq_A DTMP kinase, thymidylat 93.3 0.098 3.4E-06 47.9 5.6 25 160-184 25-49 (229)
247 3d3q_A TRNA delta(2)-isopenten 93.3 0.045 1.5E-06 53.1 3.4 22 162-183 8-29 (340)
248 3cmu_A Protein RECA, recombina 93.3 0.17 5.8E-06 60.1 8.6 85 160-251 382-472 (2050)
249 2i3b_A HCR-ntpase, human cance 93.2 0.038 1.3E-06 49.1 2.5 22 163-184 3-24 (189)
250 1iy2_A ATP-dependent metallopr 93.2 0.04 1.4E-06 52.1 2.9 50 135-184 40-96 (278)
251 3lnc_A Guanylate kinase, GMP k 93.2 0.03 1E-06 51.3 1.9 23 161-183 27-50 (231)
252 1ak2_A Adenylate kinase isoenz 93.2 0.046 1.6E-06 50.1 3.2 23 161-183 16-38 (233)
253 1np6_A Molybdopterin-guanine d 93.2 0.046 1.6E-06 47.8 2.9 24 160-183 5-28 (174)
254 2pcj_A ABC transporter, lipopr 93.2 0.048 1.6E-06 49.8 3.2 22 162-183 31-52 (224)
255 3tif_A Uncharacterized ABC tra 93.1 0.046 1.6E-06 50.4 3.0 23 161-183 31-53 (235)
256 1yrb_A ATP(GTP)binding protein 93.1 0.06 2.1E-06 50.1 4.0 25 159-183 12-36 (262)
257 3r20_A Cytidylate kinase; stru 93.1 0.048 1.6E-06 50.1 3.1 23 161-183 9-31 (233)
258 1ltq_A Polynucleotide kinase; 93.1 0.049 1.7E-06 52.0 3.4 22 162-183 3-24 (301)
259 2onk_A Molybdate/tungstate ABC 93.1 0.048 1.6E-06 50.4 3.1 24 159-183 23-46 (240)
260 3cmw_A Protein RECA, recombina 93.1 0.15 5.3E-06 59.6 7.9 85 160-251 382-472 (1706)
261 3gfo_A Cobalt import ATP-bindi 93.0 0.063 2.1E-06 50.7 3.9 22 162-183 35-56 (275)
262 3exa_A TRNA delta(2)-isopenten 93.0 0.056 1.9E-06 51.7 3.5 23 161-183 3-25 (322)
263 3foz_A TRNA delta(2)-isopenten 93.0 0.062 2.1E-06 51.3 3.8 25 159-183 8-32 (316)
264 3crm_A TRNA delta(2)-isopenten 93.0 0.053 1.8E-06 52.3 3.4 23 161-183 5-27 (323)
265 2eyu_A Twitching motility prot 93.0 0.093 3.2E-06 49.1 5.0 109 160-282 24-135 (261)
266 1tf7_A KAIC; homohexamer, hexa 93.0 0.071 2.4E-06 55.5 4.5 25 160-184 280-304 (525)
267 2r9v_A ATP synthase subunit al 93.0 0.25 8.6E-06 50.2 8.3 96 146-249 164-276 (515)
268 1g41_A Heat shock protein HSLU 92.9 0.068 2.3E-06 53.9 4.1 49 135-183 15-72 (444)
269 3end_A Light-independent proto 92.9 0.12 4.1E-06 49.5 5.7 42 158-201 38-79 (307)
270 3e1s_A Exodeoxyribonuclease V, 92.8 0.16 5.6E-06 53.2 7.1 103 162-277 205-313 (574)
271 1oix_A RAS-related protein RAB 92.8 0.061 2.1E-06 47.5 3.3 24 161-184 29-52 (191)
272 2og2_A Putative signal recogni 92.8 0.065 2.2E-06 52.6 3.7 24 160-183 156-179 (359)
273 2zej_A Dardarin, leucine-rich 92.8 0.052 1.8E-06 47.6 2.8 22 163-184 4-25 (184)
274 3zvl_A Bifunctional polynucleo 92.8 0.056 1.9E-06 54.4 3.3 25 159-183 256-280 (416)
275 3b85_A Phosphate starvation-in 92.8 0.045 1.5E-06 49.4 2.4 22 162-183 23-44 (208)
276 1tue_A Replication protein E1; 92.8 0.079 2.7E-06 47.4 3.8 23 161-183 58-80 (212)
277 2cbz_A Multidrug resistance-as 92.7 0.057 1.9E-06 49.8 3.0 23 161-183 31-53 (237)
278 2wji_A Ferrous iron transport 92.7 0.074 2.5E-06 45.6 3.6 23 162-184 4-26 (165)
279 4hlc_A DTMP kinase, thymidylat 92.7 0.28 9.5E-06 44.0 7.5 29 162-192 3-31 (205)
280 2qe7_A ATP synthase subunit al 92.7 0.23 7.9E-06 50.5 7.6 96 146-249 151-263 (502)
281 1b0u_A Histidine permease; ABC 92.6 0.058 2E-06 50.5 3.0 23 161-183 32-54 (262)
282 3b5x_A Lipid A export ATP-bind 92.6 0.42 1.4E-05 50.3 9.9 24 160-183 368-391 (582)
283 2fz4_A DNA repair protein RAD2 92.6 0.33 1.1E-05 44.5 8.1 93 164-264 111-216 (237)
284 2ged_A SR-beta, signal recogni 92.6 0.067 2.3E-06 47.0 3.3 25 160-184 47-71 (193)
285 1q3t_A Cytidylate kinase; nucl 92.6 0.065 2.2E-06 49.2 3.3 25 159-183 14-38 (236)
286 2dyk_A GTP-binding protein; GT 92.6 0.076 2.6E-06 44.9 3.5 23 162-184 2-24 (161)
287 4g1u_C Hemin import ATP-bindin 92.5 0.062 2.1E-06 50.5 3.0 23 161-183 37-59 (266)
288 1a7j_A Phosphoribulokinase; tr 92.5 0.033 1.1E-06 53.2 1.1 24 160-183 4-27 (290)
289 1ji0_A ABC transporter; ATP bi 92.5 0.063 2.2E-06 49.6 3.0 22 162-183 33-54 (240)
290 3cf2_A TER ATPase, transitiona 92.5 0.2 6.9E-06 54.4 7.3 49 136-184 478-534 (806)
291 1g6h_A High-affinity branched- 92.4 0.064 2.2E-06 50.1 3.0 23 161-183 33-55 (257)
292 2d2e_A SUFC protein; ABC-ATPas 92.4 0.068 2.3E-06 49.7 3.2 22 162-183 30-51 (250)
293 3ld9_A DTMP kinase, thymidylat 92.4 0.24 8.3E-06 45.0 6.8 26 159-184 19-44 (223)
294 2ff7_A Alpha-hemolysin translo 92.4 0.066 2.3E-06 49.7 3.0 23 161-183 35-57 (247)
295 2olj_A Amino acid ABC transpor 92.4 0.066 2.2E-06 50.2 3.0 24 160-183 49-72 (263)
296 3lv8_A DTMP kinase, thymidylat 92.4 0.21 7.3E-06 45.8 6.5 37 161-198 27-63 (236)
297 1sgw_A Putative ABC transporte 92.3 0.057 1.9E-06 48.9 2.5 22 162-183 36-57 (214)
298 3vkw_A Replicase large subunit 92.3 0.22 7.6E-06 50.0 6.9 26 158-183 158-183 (446)
299 1mv5_A LMRA, multidrug resista 92.3 0.082 2.8E-06 48.9 3.6 24 160-183 27-50 (243)
300 2ocp_A DGK, deoxyguanosine kin 92.3 0.085 2.9E-06 48.6 3.7 23 161-183 2-24 (241)
301 2zu0_C Probable ATP-dependent 92.3 0.072 2.5E-06 50.1 3.2 23 161-183 46-68 (267)
302 2ce2_X GTPase HRAS; signaling 92.3 0.076 2.6E-06 44.9 3.2 22 163-184 5-26 (166)
303 2f9l_A RAB11B, member RAS onco 92.3 0.067 2.3E-06 47.5 2.8 24 161-184 5-28 (199)
304 4akg_A Glutathione S-transfera 92.2 0.52 1.8E-05 57.9 11.1 80 162-251 1268-1347(2695)
305 1vpl_A ABC transporter, ATP-bi 92.2 0.071 2.4E-06 49.8 3.0 23 161-183 41-63 (256)
306 1nlf_A Regulatory protein REPA 92.2 0.078 2.7E-06 50.1 3.4 23 161-183 30-52 (279)
307 2vp4_A Deoxynucleoside kinase; 92.2 0.072 2.5E-06 48.8 3.0 25 159-183 18-42 (230)
308 2qmh_A HPR kinase/phosphorylas 92.2 0.08 2.8E-06 47.0 3.1 23 161-183 34-56 (205)
309 2ghi_A Transport protein; mult 92.2 0.073 2.5E-06 49.8 3.0 23 161-183 46-68 (260)
310 2ixe_A Antigen peptide transpo 92.2 0.072 2.5E-06 50.2 3.0 24 160-183 44-67 (271)
311 3dzd_A Transcriptional regulat 92.1 0.4 1.4E-05 47.2 8.5 45 136-183 130-174 (368)
312 2wjg_A FEOB, ferrous iron tran 92.1 0.096 3.3E-06 45.7 3.6 25 160-184 6-30 (188)
313 2qi9_C Vitamin B12 import ATP- 92.0 0.078 2.7E-06 49.3 3.0 22 162-183 27-48 (249)
314 2v9p_A Replication protein E1; 92.0 0.081 2.8E-06 50.6 3.2 24 160-183 125-148 (305)
315 3l0o_A Transcription terminati 92.0 0.066 2.3E-06 52.6 2.5 53 144-202 162-216 (427)
316 2yz2_A Putative ABC transporte 92.0 0.079 2.7E-06 49.8 3.0 23 161-183 33-55 (266)
317 1cp2_A CP2, nitrogenase iron p 92.0 0.18 6E-06 47.2 5.5 38 162-201 2-39 (269)
318 2nq2_C Hypothetical ABC transp 91.9 0.08 2.7E-06 49.3 3.0 22 162-183 32-53 (253)
319 3k1j_A LON protease, ATP-depen 91.9 0.092 3.1E-06 55.6 3.8 42 135-183 41-82 (604)
320 2ihy_A ABC transporter, ATP-bi 91.9 0.081 2.8E-06 50.1 3.0 23 161-183 47-69 (279)
321 1z2a_A RAS-related protein RAB 91.9 0.083 2.8E-06 45.0 2.9 24 161-184 5-28 (168)
322 3v9p_A DTMP kinase, thymidylat 91.9 0.2 7E-06 45.6 5.6 24 161-184 25-48 (227)
323 2nzj_A GTP-binding protein REM 91.9 0.086 2.9E-06 45.3 3.0 24 161-184 4-27 (175)
324 1svm_A Large T antigen; AAA+ f 91.8 0.13 4.5E-06 50.8 4.5 25 159-183 167-191 (377)
325 3sop_A Neuronal-specific septi 91.7 0.096 3.3E-06 49.3 3.4 21 163-183 4-24 (270)
326 3eph_A TRNA isopentenyltransfe 91.7 0.1 3.5E-06 51.7 3.7 22 162-183 3-24 (409)
327 2afh_E Nitrogenase iron protei 91.7 0.19 6.6E-06 47.5 5.5 39 161-201 2-40 (289)
328 2r8r_A Sensor protein; KDPD, P 91.7 0.27 9.1E-06 44.7 6.0 38 162-201 7-44 (228)
329 1nij_A Hypothetical protein YJ 91.6 0.097 3.3E-06 50.6 3.3 25 160-184 3-27 (318)
330 3con_A GTPase NRAS; structural 91.6 0.09 3.1E-06 46.0 2.9 23 162-184 22-44 (190)
331 2ck3_A ATP synthase subunit al 91.6 0.38 1.3E-05 48.9 7.7 100 146-249 151-271 (510)
332 3q72_A GTP-binding protein RAD 91.6 0.09 3.1E-06 44.7 2.8 22 163-184 4-25 (166)
333 1svi_A GTP-binding protein YSX 91.6 0.12 4.2E-06 45.4 3.7 25 160-184 22-46 (195)
334 2p67_A LAO/AO transport system 91.6 0.32 1.1E-05 47.3 7.1 25 159-183 54-78 (341)
335 2gj8_A MNME, tRNA modification 91.5 0.1 3.6E-06 45.1 3.2 23 162-184 5-27 (172)
336 3q85_A GTP-binding protein REM 91.5 0.1 3.4E-06 44.6 3.0 22 162-183 3-24 (169)
337 1u8z_A RAS-related protein RAL 91.5 0.1 3.5E-06 44.3 3.0 23 162-184 5-27 (168)
338 2erx_A GTP-binding protein DI- 91.5 0.1 3.4E-06 44.6 3.0 23 162-184 4-26 (172)
339 3pqc_A Probable GTP-binding pr 91.5 0.14 4.6E-06 44.9 3.9 25 160-184 22-46 (195)
340 3gqb_B V-type ATP synthase bet 91.5 0.25 8.6E-06 49.6 6.1 100 146-249 136-260 (464)
341 1m7b_A RND3/RHOE small GTP-bin 91.4 0.11 3.6E-06 45.4 3.2 25 160-184 6-30 (184)
342 2lkc_A Translation initiation 91.4 0.12 4.1E-06 44.5 3.4 26 159-184 6-31 (178)
343 3cmw_A Protein RECA, recombina 91.3 0.34 1.2E-05 56.8 7.9 83 160-249 1430-1518(1706)
344 1fzq_A ADP-ribosylation factor 91.3 0.14 4.8E-06 44.6 3.8 26 159-184 14-39 (181)
345 1z08_A RAS-related protein RAB 91.3 0.11 3.7E-06 44.4 3.0 25 160-184 5-29 (170)
346 1c1y_A RAS-related protein RAP 91.3 0.11 3.6E-06 44.3 2.9 23 162-184 4-26 (167)
347 1p5z_B DCK, deoxycytidine kina 91.3 0.077 2.6E-06 49.7 2.1 24 160-183 23-46 (263)
348 2pjz_A Hypothetical protein ST 91.2 0.11 3.6E-06 48.8 3.0 22 162-183 31-52 (263)
349 1ek0_A Protein (GTP-binding pr 91.2 0.11 3.8E-06 44.2 3.0 22 163-184 5-26 (170)
350 1kao_A RAP2A; GTP-binding prot 91.2 0.11 3.7E-06 44.1 2.9 23 162-184 4-26 (167)
351 1z0j_A RAB-22, RAS-related pro 91.2 0.11 3.8E-06 44.2 3.0 23 162-184 7-29 (170)
352 2qm8_A GTPase/ATPase; G protei 91.2 0.21 7.3E-06 48.6 5.3 25 159-183 53-77 (337)
353 3ihw_A Centg3; RAS, centaurin, 91.2 0.11 3.8E-06 45.5 3.0 25 160-184 19-43 (184)
354 2fn4_A P23, RAS-related protei 91.2 0.16 5.5E-06 43.7 4.1 26 159-184 7-32 (181)
355 2cxx_A Probable GTP-binding pr 91.1 0.12 4.1E-06 45.1 3.2 22 163-184 3-24 (190)
356 3nh6_A ATP-binding cassette SU 91.1 0.083 2.8E-06 50.7 2.2 24 160-183 79-102 (306)
357 3kta_A Chromosome segregation 91.1 0.13 4.5E-06 44.9 3.4 21 163-183 28-48 (182)
358 1g16_A RAS-related protein SEC 91.1 0.12 4.2E-06 44.0 3.1 23 162-184 4-26 (170)
359 1r8s_A ADP-ribosylation factor 91.0 0.12 3.9E-06 44.0 2.9 20 164-183 3-22 (164)
360 3fvq_A Fe(3+) IONS import ATP- 91.0 0.12 4.2E-06 50.5 3.4 23 161-183 30-52 (359)
361 1nrj_B SR-beta, signal recogni 91.0 0.13 4.3E-06 46.3 3.2 26 159-184 10-35 (218)
362 1f6b_A SAR1; gtpases, N-termin 91.0 0.11 3.7E-06 46.2 2.7 24 161-184 25-48 (198)
363 2v3c_C SRP54, signal recogniti 91.0 0.078 2.7E-06 53.5 1.9 25 160-184 98-122 (432)
364 3qf4_A ABC transporter, ATP-bi 90.9 0.46 1.6E-05 50.0 8.0 24 160-183 368-391 (587)
365 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.12 4.2E-06 44.5 3.0 25 160-184 6-30 (177)
366 2bbs_A Cystic fibrosis transme 90.9 0.12 4.2E-06 49.1 3.2 24 160-183 63-86 (290)
367 2axn_A 6-phosphofructo-2-kinas 90.9 0.13 4.5E-06 53.3 3.6 24 160-183 34-57 (520)
368 3c5c_A RAS-like protein 12; GD 90.9 0.12 4.1E-06 45.3 3.0 24 161-184 21-44 (187)
369 1u0j_A DNA replication protein 90.9 0.22 7.6E-06 46.4 4.9 25 159-183 102-126 (267)
370 2www_A Methylmalonic aciduria 90.9 0.14 4.9E-06 50.1 3.7 24 160-183 73-96 (349)
371 4dzz_A Plasmid partitioning pr 90.9 0.28 9.5E-06 43.5 5.5 43 162-206 2-45 (206)
372 1ny5_A Transcriptional regulat 90.9 0.59 2E-05 46.3 8.3 45 136-183 138-182 (387)
373 1ky3_A GTP-binding protein YPT 90.8 0.15 5.3E-06 43.9 3.6 25 160-184 7-31 (182)
374 1zj6_A ADP-ribosylation factor 90.8 0.28 9.4E-06 42.8 5.2 25 160-184 15-39 (187)
375 1m2o_B GTP-binding protein SAR 90.8 0.13 4.4E-06 45.3 3.1 23 162-184 24-46 (190)
376 3tw8_B RAS-related protein RAB 90.8 0.12 4E-06 44.7 2.7 26 159-184 7-32 (181)
377 1r2q_A RAS-related protein RAB 90.7 0.13 4.3E-06 43.8 2.9 24 161-184 6-29 (170)
378 3ch4_B Pmkase, phosphomevalona 90.7 0.18 6.3E-06 44.9 3.9 25 159-183 9-33 (202)
379 1fx0_A ATP synthase alpha chai 90.7 0.32 1.1E-05 49.5 6.1 82 162-249 164-264 (507)
380 2bme_A RAB4A, RAS-related prot 90.7 0.14 4.8E-06 44.5 3.2 25 160-184 9-33 (186)
381 2j9r_A Thymidine kinase; TK1, 90.7 0.27 9.1E-06 44.2 4.9 109 161-280 28-138 (214)
382 3io3_A DEHA2D07832P; chaperone 90.6 0.32 1.1E-05 47.4 6.0 44 159-204 16-61 (348)
383 2y8e_A RAB-protein 6, GH09086P 90.6 0.14 4.9E-06 44.0 3.2 23 162-184 15-37 (179)
384 1moz_A ARL1, ADP-ribosylation 90.6 0.16 5.6E-06 43.9 3.5 25 160-184 17-41 (183)
385 2hxs_A RAB-26, RAS-related pro 90.6 0.21 7.2E-06 42.9 4.3 25 160-184 5-29 (178)
386 3t1o_A Gliding protein MGLA; G 90.6 0.13 4.4E-06 45.1 2.9 23 161-183 14-36 (198)
387 3tui_C Methionine import ATP-b 90.5 0.14 4.7E-06 50.3 3.2 61 227-287 168-231 (366)
388 2cjw_A GTP-binding protein GEM 90.5 0.14 4.6E-06 45.3 3.0 23 161-183 6-28 (192)
389 1z0f_A RAB14, member RAS oncog 90.5 0.13 4.6E-06 44.1 2.9 25 160-184 14-38 (179)
390 4dsu_A GTPase KRAS, isoform 2B 90.5 0.14 4.7E-06 44.6 3.0 23 162-184 5-27 (189)
391 3oaa_A ATP synthase subunit al 90.5 0.77 2.6E-05 46.6 8.6 94 146-249 151-263 (513)
392 2iwr_A Centaurin gamma 1; ANK 90.5 0.11 3.6E-06 45.0 2.2 24 161-184 7-30 (178)
393 2h92_A Cytidylate kinase; ross 90.5 0.12 4E-06 46.7 2.6 22 162-183 4-25 (219)
394 3vr4_D V-type sodium ATPase su 90.5 0.44 1.5E-05 47.9 6.8 98 146-249 140-257 (465)
395 3cbq_A GTP-binding protein REM 90.5 0.11 3.8E-06 46.0 2.3 24 160-183 22-45 (195)
396 3iqw_A Tail-anchored protein t 90.5 0.34 1.2E-05 47.0 6.0 45 159-205 14-58 (334)
397 3fdi_A Uncharacterized protein 90.5 0.16 5.4E-06 45.4 3.3 22 162-183 7-28 (201)
398 3llu_A RAS-related GTP-binding 90.4 0.15 5.1E-06 45.0 3.1 23 161-183 20-42 (196)
399 1upt_A ARL1, ADP-ribosylation 90.4 0.19 6.5E-06 42.8 3.7 25 160-184 6-30 (171)
400 1mh1_A RAC1; GTP-binding, GTPa 90.4 0.15 5E-06 44.3 3.0 24 161-184 5-28 (186)
401 1pui_A ENGB, probable GTP-bind 90.4 0.1 3.4E-06 46.6 1.9 25 160-184 25-49 (210)
402 4bas_A ADP-ribosylation factor 90.3 0.17 5.7E-06 44.6 3.4 26 159-184 15-40 (199)
403 1z47_A CYSA, putative ABC-tran 90.3 0.15 5E-06 50.0 3.2 23 161-183 41-63 (355)
404 3bc1_A RAS-related protein RAB 90.3 0.14 4.9E-06 44.7 2.9 25 160-184 10-34 (195)
405 3t5g_A GTP-binding protein RHE 90.3 0.17 5.7E-06 43.8 3.3 25 160-184 5-29 (181)
406 1gwn_A RHO-related GTP-binding 90.3 0.16 5.3E-06 45.5 3.2 25 160-184 27-51 (205)
407 2a9k_A RAS-related protein RAL 90.2 0.15 5.2E-06 44.2 3.0 24 161-184 18-41 (187)
408 3bwd_D RAC-like GTP-binding pr 90.2 0.15 5.2E-06 44.0 3.0 24 161-184 8-31 (182)
409 2efe_B Small GTP-binding prote 90.2 0.15 5.2E-06 44.0 3.0 24 161-184 12-35 (181)
410 3f9v_A Minichromosome maintena 90.2 0.088 3E-06 55.5 1.6 21 163-183 329-349 (595)
411 1lw7_A Transcriptional regulat 90.2 0.15 5.1E-06 50.3 3.2 23 161-183 170-192 (365)
412 3rlf_A Maltose/maltodextrin im 90.2 0.15 5.2E-06 50.3 3.2 23 161-183 29-51 (381)
413 2xau_A PRE-mRNA-splicing facto 90.2 1.6 5.4E-05 47.5 11.5 90 162-251 110-219 (773)
414 1g8f_A Sulfate adenylyltransfe 90.1 0.19 6.5E-06 51.7 4.0 24 160-183 394-417 (511)
415 2c61_A A-type ATP synthase non 90.1 0.29 1E-05 49.4 5.3 100 146-249 141-258 (469)
416 2atv_A RERG, RAS-like estrogen 90.1 0.15 5.3E-06 44.9 3.0 24 161-184 28-51 (196)
417 2oil_A CATX-8, RAS-related pro 90.1 0.15 5.1E-06 44.8 2.8 25 160-184 24-48 (193)
418 2fg5_A RAB-22B, RAS-related pr 90.1 0.17 5.7E-06 44.5 3.1 24 161-184 23-46 (192)
419 2qu8_A Putative nucleolar GTP- 90.1 0.2 6.7E-06 45.5 3.7 26 159-184 27-52 (228)
420 3kkq_A RAS-related protein M-R 90.1 0.23 7.8E-06 43.0 4.0 25 160-184 17-41 (183)
421 2ew1_A RAS-related protein RAB 90.1 0.16 5.5E-06 45.2 3.1 25 160-184 25-49 (201)
422 3oes_A GTPase rhebl1; small GT 90.1 0.16 5.5E-06 45.0 3.1 25 160-184 23-47 (201)
423 3iev_A GTP-binding protein ERA 90.0 0.18 6.1E-06 48.4 3.5 27 158-184 7-33 (308)
424 2yyz_A Sugar ABC transporter, 90.0 0.16 5.5E-06 49.8 3.2 23 161-183 29-51 (359)
425 1p9r_A General secretion pathw 90.0 0.3 1E-05 48.9 5.3 24 160-183 166-189 (418)
426 3dz8_A RAS-related protein RAB 90.0 0.17 5.7E-06 44.4 3.1 24 161-184 23-46 (191)
427 2qnr_A Septin-2, protein NEDD5 89.9 0.16 5.4E-06 48.6 3.0 21 163-183 20-40 (301)
428 4dkx_A RAS-related protein RAB 89.9 0.16 5.6E-06 45.9 3.0 22 163-184 15-36 (216)
429 2g6b_A RAS-related protein RAB 89.9 0.16 5.5E-06 43.8 2.9 25 160-184 9-33 (180)
430 1vg8_A RAS-related protein RAB 89.9 0.16 5.6E-06 45.0 3.0 25 160-184 7-31 (207)
431 2it1_A 362AA long hypothetical 89.9 0.17 5.7E-06 49.7 3.2 23 161-183 29-51 (362)
432 3gmt_A Adenylate kinase; ssgci 89.9 0.16 5.5E-06 46.3 2.9 23 161-183 8-30 (230)
433 1zbd_A Rabphilin-3A; G protein 89.9 0.17 5.7E-06 44.8 3.0 24 161-184 8-31 (203)
434 1bif_A 6-phosphofructo-2-kinas 89.8 0.18 6E-06 51.6 3.5 24 160-183 38-61 (469)
435 2bov_A RAla, RAS-related prote 89.8 0.23 7.8E-06 43.9 3.9 25 160-184 13-37 (206)
436 1g29_1 MALK, maltose transport 89.8 0.17 5.8E-06 49.9 3.2 22 162-183 30-51 (372)
437 2g3y_A GTP-binding protein GEM 89.8 0.17 5.8E-06 45.6 3.0 23 161-183 37-59 (211)
438 3kjh_A CO dehydrogenase/acetyl 89.8 0.28 9.6E-06 45.0 4.6 39 164-204 3-41 (254)
439 2fh5_B SR-beta, signal recogni 89.7 0.17 5.9E-06 45.2 3.0 25 160-184 6-30 (214)
440 1ksh_A ARF-like protein 2; sma 89.7 0.17 5.9E-06 44.0 2.9 26 160-185 17-42 (186)
441 2ewv_A Twitching motility prot 89.7 0.2 6.7E-06 49.6 3.6 108 160-281 135-245 (372)
442 3reg_A RHO-like small GTPase; 89.7 0.18 6E-06 44.4 3.0 25 160-184 22-46 (194)
443 3fkq_A NTRC-like two-domain pr 89.7 0.38 1.3E-05 47.5 5.7 40 159-200 141-181 (373)
444 1v43_A Sugar-binding transport 89.7 0.18 6E-06 49.8 3.2 23 161-183 37-59 (372)
445 2o52_A RAS-related protein RAB 89.7 0.19 6.4E-06 44.6 3.1 25 160-184 24-48 (200)
446 2gf9_A RAS-related protein RAB 89.7 0.18 6.1E-06 44.1 3.0 24 161-184 22-45 (189)
447 1zd9_A ADP-ribosylation factor 89.7 0.17 5.9E-06 44.2 2.9 24 161-184 22-45 (188)
448 1tq4_A IIGP1, interferon-induc 89.6 0.19 6.4E-06 50.3 3.4 24 160-183 68-91 (413)
449 2h17_A ADP-ribosylation factor 89.6 0.19 6.4E-06 43.7 3.1 24 161-184 21-44 (181)
450 1ega_A Protein (GTP-binding pr 89.6 0.18 6.2E-06 48.2 3.2 25 160-184 7-31 (301)
451 3tkl_A RAS-related protein RAB 89.6 0.18 6.2E-06 44.2 3.0 25 160-184 15-39 (196)
452 2q3h_A RAS homolog gene family 89.6 0.18 6.2E-06 44.6 3.0 25 160-184 19-43 (201)
453 1h65_A Chloroplast outer envel 89.6 0.36 1.2E-05 45.2 5.2 25 160-184 38-62 (270)
454 2j1l_A RHO-related GTP-binding 89.5 0.19 6.6E-06 45.1 3.1 25 160-184 33-57 (214)
455 3lxx_A GTPase IMAP family memb 89.5 0.22 7.5E-06 45.7 3.6 26 159-184 27-52 (239)
456 3cwq_A Para family chromosome 89.5 0.5 1.7E-05 42.3 5.9 42 163-207 2-44 (209)
457 2a5j_A RAS-related protein RAB 89.5 0.18 6.3E-06 44.2 2.9 24 161-184 21-44 (191)
458 3def_A T7I23.11 protein; chlor 89.5 0.37 1.3E-05 44.9 5.2 25 160-184 35-59 (262)
459 2yv5_A YJEQ protein; hydrolase 89.4 0.29 9.8E-06 46.8 4.4 31 144-182 156-186 (302)
460 2bcg_Y Protein YP2, GTP-bindin 89.4 0.2 6.8E-06 44.5 3.1 25 160-184 7-31 (206)
461 1z06_A RAS-related protein RAB 89.4 0.19 6.5E-06 43.9 3.0 25 160-184 19-43 (189)
462 3ug7_A Arsenical pump-driving 89.4 0.74 2.5E-05 44.9 7.5 25 159-183 24-48 (349)
463 3d31_A Sulfate/molybdate ABC t 89.4 0.15 5E-06 49.9 2.4 23 161-183 26-48 (348)
464 2p5s_A RAS and EF-hand domain 89.4 0.19 6.5E-06 44.4 2.9 25 160-184 27-51 (199)
465 3k53_A Ferrous iron transport 89.4 0.24 8.1E-06 46.5 3.8 24 161-184 3-26 (271)
466 2gf0_A GTP-binding protein DI- 89.3 0.27 9.3E-06 43.1 4.0 25 160-184 7-31 (199)
467 1x3s_A RAS-related protein RAB 89.3 0.2 6.7E-06 43.9 3.0 24 161-184 15-38 (195)
468 3gd7_A Fusion complex of cysti 89.3 0.2 7E-06 49.6 3.4 24 160-183 46-69 (390)
469 2gza_A Type IV secretion syste 89.3 0.17 5.8E-06 49.8 2.8 22 162-183 176-197 (361)
470 3clv_A RAB5 protein, putative; 89.3 0.28 9.5E-06 43.1 4.0 25 160-184 6-30 (208)
471 4gzl_A RAS-related C3 botulinu 89.3 0.25 8.4E-06 44.0 3.6 25 160-184 29-53 (204)
472 3cr8_A Sulfate adenylyltranfer 89.2 0.17 5.7E-06 52.7 2.7 24 160-183 368-391 (552)
473 2il1_A RAB12; G-protein, GDP, 89.2 0.18 6.2E-06 44.3 2.6 24 161-184 26-49 (192)
474 2b6h_A ADP-ribosylation factor 89.1 0.26 8.9E-06 43.3 3.7 25 160-184 28-52 (192)
475 2hup_A RAS-related protein RAB 89.1 0.22 7.4E-06 44.3 3.2 25 160-184 28-52 (201)
476 2atx_A Small GTP binding prote 89.1 0.22 7.4E-06 43.7 3.2 24 161-184 18-41 (194)
477 1jwy_B Dynamin A GTPase domain 89.1 0.39 1.3E-05 45.9 5.2 26 159-184 22-47 (315)
478 3tqf_A HPR(Ser) kinase; transf 89.1 0.27 9.2E-06 42.5 3.5 22 162-183 17-38 (181)
479 2j0v_A RAC-like GTP-binding pr 89.1 0.22 7.4E-06 44.5 3.2 25 160-184 8-32 (212)
480 2fv8_A H6, RHO-related GTP-bin 89.0 0.21 7.3E-06 44.5 3.1 24 161-184 25-48 (207)
481 3mfy_A V-type ATP synthase alp 89.0 0.81 2.8E-05 47.0 7.5 59 146-212 216-275 (588)
482 2gco_A H9, RHO-related GTP-bin 88.9 0.23 7.9E-06 44.0 3.2 24 161-184 25-48 (201)
483 3k9g_A PF-32 protein; ssgcid, 88.9 0.46 1.6E-05 44.3 5.4 46 159-207 25-71 (267)
484 1zcb_A G alpha I/13; GTP-bindi 88.8 0.25 8.6E-06 48.5 3.6 23 159-181 31-53 (362)
485 3vr4_A V-type sodium ATPase ca 88.8 1.2 4E-05 46.0 8.5 58 146-211 221-279 (600)
486 2h57_A ADP-ribosylation factor 88.8 0.18 6.1E-06 44.1 2.3 24 161-184 21-44 (190)
487 1x6v_B Bifunctional 3'-phospho 88.8 0.26 9E-06 51.9 3.9 24 160-183 51-74 (630)
488 1oxx_K GLCV, glucose, ABC tran 88.7 0.14 4.7E-06 50.2 1.7 23 161-183 31-53 (353)
489 3zq6_A Putative arsenical pump 88.7 0.63 2.1E-05 44.9 6.3 43 161-205 14-56 (324)
490 3cph_A RAS-related protein SEC 88.7 0.23 7.8E-06 44.2 3.0 24 161-184 20-43 (213)
491 1mky_A Probable GTP-binding pr 88.6 0.43 1.5E-05 48.2 5.4 46 139-184 152-203 (439)
492 1m8p_A Sulfate adenylyltransfe 88.6 0.26 9E-06 51.6 3.8 24 160-183 395-418 (573)
493 1u0l_A Probable GTPase ENGC; p 88.6 0.35 1.2E-05 46.1 4.4 32 144-183 160-191 (301)
494 3q3j_B RHO-related GTP-binding 88.5 0.24 8.1E-06 44.5 3.0 24 161-184 27-50 (214)
495 2obl_A ESCN; ATPase, hydrolase 88.5 0.25 8.4E-06 48.3 3.3 24 161-184 71-94 (347)
496 2xtp_A GTPase IMAP family memb 88.5 0.3 1E-05 45.4 3.8 25 160-184 21-45 (260)
497 4f4c_A Multidrug resistance pr 88.5 0.97 3.3E-05 52.3 8.7 24 160-183 443-466 (1321)
498 2fu5_C RAS-related protein RAB 88.4 0.14 4.9E-06 44.4 1.4 25 160-184 7-31 (183)
499 3iby_A Ferrous iron transport 88.4 0.21 7.3E-06 46.5 2.7 23 162-184 2-24 (256)
500 2rcn_A Probable GTPase ENGC; Y 88.4 0.25 8.5E-06 48.3 3.2 22 162-183 216-237 (358)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-47 Score=406.63 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=238.4
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc--chhhhcccceeeEEEeCCcc--cHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN--NDEVKRNFEKVIWVCVSDTF--EEIRVAKA 211 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~ 211 (515)
..|||+.+++++.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33699999999999997542 34689999999999999999999998 66889999999999999975 89999999
Q ss_pred HHHHhcCCCC-------CcccHHHHHHHHHHHhcCC-cEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHH
Q 040597 212 IIEGLGESAS-------SLSEFQSLMSHIHRSIEGK-KFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVA 283 (515)
Q Consensus 212 il~~l~~~~~-------~~~~~~~l~~~l~~~L~~k-r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 283 (515)
|+.+++.... +..+.+.+...+++.|.++ ||||||||||+.+...|.. .+||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986521 1234567889999999996 9999999999854222221 1699999999999999
Q ss_pred hhhC-CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchhhHHhh--hhhhh
Q 040597 284 RMMG-STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSKEWQRI--LDSEM 360 (515)
Q Consensus 284 ~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~w~~~--l~~~~ 360 (515)
..++ ...+|+|++|+.++||+||.++++... ..+.+.+++++|+++|+|+||||+++|+.|+.+.|..+ +.+..
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l 355 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKL 355 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHh
Confidence 8876 346799999999999999999987543 24677889999999999999999999999988866554 33322
Q ss_pred hhcccccccccccccccccCCCCChHH-------------------------HHHHHHHc--Ccccccc-cchHHHHHHH
Q 040597 361 WKVKEVGQGLLTPLLLSYNDLSSNSME-------------------------LISLWMAQ--GYLNAEE-DEEMEMIREE 412 (515)
Q Consensus 361 ~~~~~~~~~~~~~l~lsy~~Lp~~~~~-------------------------Li~~wiae--g~i~~~~-~~~~e~~~~~ 412 (515)
+.. ....+..+|.+||++||.+-+. -+++|+|+ ||+.+.. +.+++++++
T Consensus 356 ~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 356 ESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp HHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-
T ss_pred hcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-
Confidence 322 3567999999999999865110 07899999 9998765 677888888
Q ss_pred HHHHHHhcCcccccccCCCCCeeEEEEchhhHHHHHHHHhc
Q 040597 413 HFYILAACSFFQEFKKDDDDNIMSCKMHDTVYDFSQFRLLS 453 (515)
Q Consensus 413 ~l~~Lv~rsllq~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 453 (515)
||++|+++||||+...+ ...+|+|||+||+||++++.+
T Consensus 433 ~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHH
Confidence 99999999999987543 345899999999999987765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-36 Score=349.26 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=224.9
Q ss_pred cccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhh-hccc-ceeeEEEeCCcc--cHHH
Q 040597 132 IDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTF--EEIR 207 (515)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~~~~~~--~~~~ 207 (515)
.+.+.|+||++++++|.++|... +...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++.. ....
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL---NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT---TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc---cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 44567999999999999999754 356799999999999999999999997544 4445 678899999854 3445
Q ss_pred HHHHHHHHhcCCCC----CcccHHHHHHHHHHHhcCC--cEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH
Q 040597 208 VAKAIIEGLGESAS----SLSEFQSLMSHIHRSIEGK--KFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES 281 (515)
Q Consensus 208 ~~~~il~~l~~~~~----~~~~~~~l~~~l~~~L~~k--r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 281 (515)
.+..++..+..... ...+.+.+...++..+.++ ||||||||||+. ..|..+ .+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 57777777765432 2456788889999999877 999999999865 234332 57899999999999
Q ss_pred HHhh-hCCcceeeccC-CChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh--hHHhhhh
Q 040597 282 VARM-MGSTNIIFIEQ-LTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK--EWQRILD 357 (515)
Q Consensus 282 v~~~-~~~~~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~--~w~~~l~ 357 (515)
++.. ++....+.+.+ |+.++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+ .|..+++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLR 343 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHH
Confidence 8854 45567889996 99999999999988432 23345668999999999999999999999987 7888777
Q ss_pred hhhhhcc--------cccccccccccccccCCCCChHHHHHHHHHc---Ccccccc-----cchHHHHHHHHHHHHHhcC
Q 040597 358 SEMWKVK--------EVGQGLLTPLLLSYNDLSSNSMELISLWMAQ---GYLNAEE-----DEEMEMIREEHFYILAACS 421 (515)
Q Consensus 358 ~~~~~~~--------~~~~~~~~~l~lsy~~Lp~~~~~Li~~wiae---g~i~~~~-----~~~~e~~~~~~l~~Lv~rs 421 (515)
....... .....+..+|.+||+.||++.+.++. .++. ++.-+.. ....++.++.+|++|+++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~-~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT-DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHH-HGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHH-HhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 6532221 11245888999999999998332222 2221 1100000 0111467889999999999
Q ss_pred cccccccCCCCCeeEEEEchhhHHHHHHHHhc
Q 040597 422 FFQEFKKDDDDNIMSCKMHDTVYDFSQFRLLS 453 (515)
Q Consensus 422 llq~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 453 (515)
||+... ++...+|+|||+||+||+..+.+
T Consensus 423 l~~~~~---~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 423 LLFCNR---NGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp SCEEEE---SSSSEEEECCHHHHHHHHHHTGG
T ss_pred ceEEec---CCCceEEEecHHHHHHHHhhhhH
Confidence 998643 34556899999999999987665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.7e-36 Score=322.96 Aligned_cols=264 Identities=19% Similarity=0.202 Sum_probs=199.2
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccce-eeEEEeCCcccHHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK-VIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il~ 214 (515)
..+||+.++++|.++|... .+.++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3499999999999999853 24789999999999999999999988788999986 899999999888888888777
Q ss_pred HhcCC------CC-----CcccHHHHHHHHHHHh---cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 215 GLGES------AS-----SLSEFQSLMSHIHRSI---EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 215 ~l~~~------~~-----~~~~~~~l~~~l~~~L---~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
.++.. .. ...+.+.+...+++.| .++|+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 54321 00 1123455667777765 689999999999973 455443 2 689999999999
Q ss_pred HHHhhhCCcceeecc------CCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh----
Q 040597 281 SVARMMGSTNIIFIE------QLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK---- 350 (515)
Q Consensus 281 ~v~~~~~~~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~---- 350 (515)
.++..+.....+.++ +|+.+||++||.+.. ... . .++..+ .|+|+||||+++|+.|+.+
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 988654433456677 999999999999984 221 1 122333 3999999999999999876
Q ss_pred -hHHhhhhhhhhhcccccccccccccccccCCCCCh-------------------HHHHHHHHHcCcccccccchHHHHH
Q 040597 351 -EWQRILDSEMWKVKEVGQGLLTPLLLSYNDLSSNS-------------------MELISLWMAQGYLNAEEDEEMEMIR 410 (515)
Q Consensus 351 -~w~~~l~~~~~~~~~~~~~~~~~l~lsy~~Lp~~~-------------------~~Li~~wiaeg~i~~~~~~~~e~~~ 410 (515)
+|... ....+..+|.+||+.||++. ..++.+|+++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 45432 23568889999999999873 22333443333 2358
Q ss_pred HHHHHHHHhcCcccccccCCCCCeeEEEEchhhHHHHH
Q 040597 411 EEHFYILAACSFFQEFKKDDDDNIMSCKMHDTVYDFSQ 448 (515)
Q Consensus 411 ~~~l~~Lv~rsllq~~~~~~~~~~~~~~mHdlv~~~a~ 448 (515)
+.+|++|+++|||+.. +...+|+||||+++++.
T Consensus 405 e~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 8999999999999873 22347999999999663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=299.42 Aligned_cols=296 Identities=19% Similarity=0.212 Sum_probs=212.0
Q ss_pred cccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhh-hccc-ceeeEEEeCCcccHHHHH
Q 040597 132 IDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~ 209 (515)
...+.||||+.+++++.++|... ....++|+|+||||+||||||..++++..+ ..+| ++++|++++.. +...++
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL---KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS---TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcc---cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34567999999999999999754 345789999999999999999999997666 7889 58999999875 233333
Q ss_pred ---HHHHHHhcCC----CCCcccHHHHHHHHHHHhcC--CcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 210 ---KAIIEGLGES----ASSLSEFQSLMSHIHRSIEG--KKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 210 ---~~il~~l~~~----~~~~~~~~~l~~~l~~~L~~--kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
..++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+ . ...+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l---~----~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VL---K----AFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HH---H----TTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HH---H----HhcCCCeEEEECCCc
Confidence 3344455421 12345667778888888866 79999999998632 22 2 225689999999999
Q ss_pred HHHhhhCCcceeec---cCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhhhcchh--hHHhh
Q 040597 281 SVARMMGSTNIIFI---EQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGILLHSK--EWQRI 355 (515)
Q Consensus 281 ~v~~~~~~~~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~--~w~~~ 355 (515)
.++..+. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||.++|++++.+ .|..+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~ 341 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 341 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHH
Confidence 8876543 234444 5899999999999988532 12234568899999999999999999999887 69887
Q ss_pred hhhhhhhc--------ccccccccccccccccCCCCChHHHHHHHHHc---Cc-ccccc----cchHHHHHHHHHHHHHh
Q 040597 356 LDSEMWKV--------KEVGQGLLTPLLLSYNDLSSNSMELISLWMAQ---GY-LNAEE----DEEMEMIREEHFYILAA 419 (515)
Q Consensus 356 l~~~~~~~--------~~~~~~~~~~l~lsy~~Lp~~~~~Li~~wiae---g~-i~~~~----~~~~e~~~~~~l~~Lv~ 419 (515)
++...... ......+..++..||+.||++...++.. +|. |+ ++... .....+.++.+|++|++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~-la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD-LSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHH-GGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHH-ccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHh
Confidence 76543221 1122467788999999999984333332 332 11 11000 00112356889999999
Q ss_pred cCcccccccCCCCCeeEEEEchhhHHHHHHH
Q 040597 420 CSFFQEFKKDDDDNIMSCKMHDTVYDFSQFR 450 (515)
Q Consensus 420 rsllq~~~~~~~~~~~~~~mHdlv~~~a~~~ 450 (515)
+|||+... ++...+|+||+++|+|++..
T Consensus 421 ~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDR---NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEE---ETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEec---CCCccEEEEcHHHHHHHHhh
Confidence 99998543 23456899999999999877
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1.5e-15 Score=155.19 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=135.1
Q ss_pred cCccccccchHHHHHHHH-hccCCC-CCCcEEEEE--EecCCCcHHHHHHHHhcchhhh---cccc-eeeEEEeCCcccH
Q 040597 134 EGEVFSGVDEKNELLNKL-LCESSE-QKGLHVISL--VGLGGIGKTTLAQLAYNNDEVK---RNFE-KVIWVCVSDTFEE 205 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L-~~~~~~-~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 205 (515)
+..++||+.+++++.+.| ...... ......+.| +|++|+||||||+.+++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 421110 023456667 9999999999999999842211 0122 3578887677788
Q ss_pred HHHHHHHHHHhcCCCCC-cccHHHHHHHHHHHhc--CCcEEEEecccCCCCc------ccccchhhhcccC---C--CCc
Q 040597 206 IRVAKAIIEGLGESASS-LSEFQSLMSHIHRSIE--GKKFFLLLDDVWDGDY------NKWEPFFFCVKNG---L--HGS 271 (515)
Q Consensus 206 ~~~~~~il~~l~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~~------~~~~~l~~~l~~~---~--~gs 271 (515)
..++..++..++...+. ..+...+...+.+.+. +++++|||||+|.... ..+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765332 2234555666666664 7799999999976321 2333333333221 1 344
Q ss_pred EEEEEcccHHHHhhh--------CC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcC------CC
Q 040597 272 KILVTTRNESVARMM--------GS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCK------GL 336 (515)
Q Consensus 272 ~IivTTR~~~v~~~~--------~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~------gl 336 (515)
.||+||+...+...+ .. ...+.+.+|+.++++++|...+..... ...-..+....|++.|+ |+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc
Confidence 588788765432111 11 223899999999999999765421111 01122456788999999 99
Q ss_pred ChhhHhhhh
Q 040597 337 PLAAKVIGI 345 (515)
Q Consensus 337 PLai~~~~~ 345 (515)
|..+..++.
T Consensus 259 p~~~~~l~~ 267 (412)
T 1w5s_A 259 ARRAIVALK 267 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 976655543
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=7.2e-16 Score=153.87 Aligned_cols=197 Identities=14% Similarity=0.179 Sum_probs=131.5
Q ss_pred cccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc------cH
Q 040597 132 IDEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF------EE 205 (515)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 205 (515)
..+..|+||+.+++++.+++.. + +++.|+|++|+|||||++.+++. . . .+|+++.... +.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred CChHhcCChHHHHHHHHHHHhc------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 3456799999999999998863 1 68999999999999999999873 2 1 6777765432 45
Q ss_pred HHHHHHHHHHhcC-----------------CCC-CcccHHHHHHHHHHHhcC-CcEEEEecccCCCCc-------ccccc
Q 040597 206 IRVAKAIIEGLGE-----------------SAS-SLSEFQSLMSHIHRSIEG-KKFFLLLDDVWDGDY-------NKWEP 259 (515)
Q Consensus 206 ~~~~~~il~~l~~-----------------~~~-~~~~~~~l~~~l~~~L~~-kr~LlVLDdvw~~~~-------~~~~~ 259 (515)
..++..+...+.. ..+ ...+...+...+.+.... ++++|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 123455666666665543 499999999976432 12233
Q ss_pred hhhhcccCCCCcEEEEEcccHHHHhhh-----------CC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHH
Q 040597 260 FFFCVKNGLHGSKILVTTRNESVARMM-----------GS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGR 327 (515)
Q Consensus 260 l~~~l~~~~~gs~IivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~ 327 (515)
+...+... ++..+|+|++.......+ +. ...+.+.+|+.+++.+++.......+. ....+.+.
T Consensus 155 L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----~~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----DVPENEIE 229 (350)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHH
T ss_pred HHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHH
Confidence 33333222 467899998875432211 11 247899999999999999875422111 11235678
Q ss_pred HHHHHcCCCChhhHhhhhhc
Q 040597 328 KIAHKCKGLPLAAKVIGILL 347 (515)
Q Consensus 328 ~I~~~c~glPLai~~~~~~L 347 (515)
.|++.|+|+|+++..++..+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 89999999999999988654
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=6.6e-15 Score=147.18 Aligned_cols=194 Identities=13% Similarity=0.223 Sum_probs=123.9
Q ss_pred ccCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-----ccHHH
Q 040597 133 DEGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-----FEEIR 207 (515)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 207 (515)
....++||+++++++.+ +. . +++.|+|++|+|||+|++.+.+. ... ..+|+++... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~-----~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR-----A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC-----S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hc-----C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH
Confidence 44679999999999998 63 1 58999999999999999999873 322 2578887642 23344
Q ss_pred HHHHHHHHhcC-------------C-------CC---------CcccHHHHHHHHHHHhcCCcEEEEecccCCCCc---c
Q 040597 208 VAKAIIEGLGE-------------S-------AS---------SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY---N 255 (515)
Q Consensus 208 ~~~~il~~l~~-------------~-------~~---------~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~---~ 255 (515)
++..+...+.. . .. .......+...+.+... ++++|||||++..+. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 44444433310 0 00 12234555555554433 499999999976432 2
Q ss_pred ccc-chhhhcccCCCCcEEEEEcccHHHHhhh-----------CC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccch
Q 040597 256 KWE-PFFFCVKNGLHGSKILVTTRNESVARMM-----------GS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKL 322 (515)
Q Consensus 256 ~~~-~l~~~l~~~~~gs~IivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~ 322 (515)
.+. .+...... ..+..+|+|++........ +. ...+.+.+|+.+++.+++.......+. ....
T Consensus 156 ~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~- 231 (357)
T 2fna_A 156 NLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD- 231 (357)
T ss_dssp CCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC-
T ss_pred hHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc-
Confidence 232 23322222 2467899999876532211 11 257899999999999999875421111 1111
Q ss_pred HHHHHHHHHHcCCCChhhHhhhhhcc
Q 040597 323 EPIGRKIAHKCKGLPLAAKVIGILLH 348 (515)
Q Consensus 323 ~~~~~~I~~~c~glPLai~~~~~~L~ 348 (515)
...|++.|+|+|+++..++..+.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHc
Confidence 17899999999999999987764
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=7.6e-13 Score=133.81 Aligned_cols=277 Identities=11% Similarity=0.008 Sum_probs=166.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc--------cceeeEEEeCCcc-cH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--------FEKVIWVCVSDTF-EE 205 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~~~~~~-~~ 205 (515)
..++||+.+++++.+++..... ....+.+.|+|++|+|||+||+.+++. .... ....+|+++.... +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 6799999999999988764211 234568999999999999999999984 3222 2346778877666 78
Q ss_pred HHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccch-hhhcccCCCCcEEEEEcccHHH
Q 040597 206 IRVAKAIIEGLGESAS--SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPF-FFCVKNGLHGSKILVTTRNESV 282 (515)
Q Consensus 206 ~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l-~~~l~~~~~gs~IivTTR~~~v 282 (515)
..++..++..+..... .......+...+.+.+..++.+|||||++......+..+ ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8888888888843221 122335566777777777666999999965432222222 3233322257788888886521
Q ss_pred H----hhh-CC-cceeeccCCChhhhHHHHHHhhcCC-CCCCCccchHHHHHHHHHHcC---CCCh-hhHhhhhhc--c-
Q 040597 283 A----RMM-GS-TNIIFIEQLTEEECWSLFKRLAFFD-RSFEDYEKLEPIGRKIAHKCK---GLPL-AAKVIGILL--H- 348 (515)
Q Consensus 283 ~----~~~-~~-~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~c~---glPL-ai~~~~~~L--~- 348 (515)
. ... .. ...+.+.+++.++..+++...+... ..... ..+..+.|++.|+ |.|. |+..+-.+. .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111 11 2389999999999999999875311 11111 1345667888887 8877 333332221 1
Q ss_pred h--h----hHHhhhhhhhhhcccccccccccccccccCCCCChHHHHHHHHHcCcccccc-------------cchHHHH
Q 040597 349 S--K----EWQRILDSEMWKVKEVGQGLLTPLLLSYNDLSSNSMELISLWMAQGYLNAEE-------------DEEMEMI 409 (515)
Q Consensus 349 ~--~----~w~~~l~~~~~~~~~~~~~~~~~l~lsy~~Lp~~~~~Li~~wiaeg~i~~~~-------------~~~~e~~ 409 (515)
. . ++..+++... ...+.-++..|+. ...++-.|++.++-...- .......
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPF-HYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 0 0 3333333221 1123445566765 366666777762110000 0001123
Q ss_pred HHHHHHHHHhcCccccccc
Q 040597 410 REEHFYILAACSFFQEFKK 428 (515)
Q Consensus 410 ~~~~l~~Lv~rsllq~~~~ 428 (515)
...+++.|..++++.....
T Consensus 323 ~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 323 FSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 4578899999999977543
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=9.1e-12 Score=125.95 Aligned_cols=206 Identities=14% Similarity=0.082 Sum_probs=137.6
Q ss_pred CccccccchHHHHHHHHhccCCC-CCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc-ceeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSE-QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-EKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 212 (515)
..++||+.+++++.+++...... .+..+.+.|+|++|+||||||+.+++. ..... ..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999988642110 122348999999999999999999873 33321 346778877777888899999
Q ss_pred HHHhcCCCCC-cccHHHHHHHHHHHhc--CCcEEEEecccCCCCcccccchhhhcccCC----CCcEEEEEcccHHHHhh
Q 040597 213 IEGLGESASS-LSEFQSLMSHIHRSIE--GKKFFLLLDDVWDGDYNKWEPFFFCVKNGL----HGSKILVTTRNESVARM 285 (515)
Q Consensus 213 l~~l~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----~gs~IivTTR~~~v~~~ 285 (515)
+..++...+. ......+...+.+.+. +++.+||||+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988754332 2234555556655553 568999999997765445555555543211 36678888776543322
Q ss_pred hC-------CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHc---------CCCChhhHhhh
Q 040597 286 MG-------STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKC---------KGLPLAAKVIG 344 (515)
Q Consensus 286 ~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c---------~glPLai~~~~ 344 (515)
+. ....+.+.+++.++..+++...+..... ...-..+....|++.+ +|.|..+..+.
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 21 1236999999999999999887632110 0122345678899999 78876554443
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=1.1e-11 Score=116.40 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=119.7
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|++..++.+..++... .....+.|+|++|+||||||+.+++. ....+....+ .+..... ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~----~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~-~~~~~~~----~~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT-PCGVCDN----CREIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT----CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS-CCSCSHH----HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC-CCcccHH----HHHHhc
Confidence 46899999999999998743 22358899999999999999999873 2222111000 0000000 000100
Q ss_pred Hh-----cCCCCCcccHHHHHHHHHHH----hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHh
Q 040597 215 GL-----GESASSLSEFQSLMSHIHRS----IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VAR 284 (515)
Q Consensus 215 ~l-----~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~ 284 (515)
.. ............+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+... +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00 00000111122222222221 135689999999987666667777777766556778888887543 211
Q ss_pred -hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhh
Q 040597 285 -MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGI 345 (515)
Q Consensus 285 -~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 345 (515)
.......+.+.+++.++..+++...+...+. .-..+....|++.|+|+|..+..+..
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1223468999999999999999987743221 11245678899999999998877654
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=4.2e-12 Score=128.17 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=129.4
Q ss_pred cCccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc---ceeeEEEeCCcccHHHHHH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---EKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~ 210 (515)
+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 36799999999999998864211 234568899999999999999999983 43332 2467777766667777888
Q ss_pred HHHHHhcCCCCC-cccHHHHHHHHHHHhc--CCcEEEEecccCCCC----cccccchhhhccc-CCCCcEEEEEcccHHH
Q 040597 211 AIIEGLGESASS-LSEFQSLMSHIHRSIE--GKKFFLLLDDVWDGD----YNKWEPFFFCVKN-GLHGSKILVTTRNESV 282 (515)
Q Consensus 211 ~il~~l~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVLDdvw~~~----~~~~~~l~~~l~~-~~~gs~IivTTR~~~v 282 (515)
.++..++...+. ..+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 888777654321 2234455555655553 458999999996532 1222333333321 2335567777776543
Q ss_pred HhhhC-------CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcC---CCChhhHh
Q 040597 283 ARMMG-------STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCK---GLPLAAKV 342 (515)
Q Consensus 283 ~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~---glPLai~~ 342 (515)
...+. ....+.+.+++.++..+++...+..... ...-..+..+.|++.++ |.|..+..
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 22211 1257999999999999999986531110 11222455667777777 99985443
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.32 E-value=2.4e-11 Score=122.65 Aligned_cols=198 Identities=15% Similarity=0.073 Sum_probs=128.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc------cceeeEEEeCCcccHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~~~~~~~~~~~ 208 (515)
..++||+.+++++.+++..... ......+.|+|++|+||||+|+.+++. .... -...+|+++....+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 6799999999999998854311 234568899999999999999999874 3221 124678888888888899
Q ss_pred HHHHHHHhcCCCCC-cccHHHHHHHHHHHh--cCCcEEEEecccCCCCcc--cccchhhhcccC-----CCCcEEEEEcc
Q 040597 209 AKAIIEGLGESASS-LSEFQSLMSHIHRSI--EGKKFFLLLDDVWDGDYN--KWEPFFFCVKNG-----LHGSKILVTTR 278 (515)
Q Consensus 209 ~~~il~~l~~~~~~-~~~~~~l~~~l~~~L--~~kr~LlVLDdvw~~~~~--~~~~l~~~l~~~-----~~gs~IivTTR 278 (515)
+..++..++...+. ......+...+.+.+ .+++.+||||+++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999764332 223455566666666 456899999999654322 122233323211 34556777777
Q ss_pred cHHH--------HhhhCCcceeeccCCChhhhHHHHHHhhcCC-CCCCCccchHHHHHHHHHHcC---CCChh
Q 040597 279 NESV--------ARMMGSTNIIFIEQLTEEECWSLFKRLAFFD-RSFEDYEKLEPIGRKIAHKCK---GLPLA 339 (515)
Q Consensus 279 ~~~v--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~c~---glPLa 339 (515)
.... ...+. ...+.+.+++.++..+++...+... ...... .+..+.|++.++ |.|-.
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARR 244 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHH
Confidence 5522 11111 2478999999999999999875320 111111 234567788887 99943
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=4.4e-11 Score=110.62 Aligned_cols=183 Identities=12% Similarity=0.011 Sum_probs=115.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-cc-eeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FE-KVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|++..++++.+++... ..+.+.|+|++|+|||++|+.+++. .... +. ..+.++.+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK- 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH-
Confidence 46899999999999988743 2234899999999999999999873 3222 22 1233333332222221111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHH-Hh-hhCCcc
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESV-AR-MMGSTN 290 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~-~~~~~~ 290 (515)
+..+..... ...+++.+|||||++.......+.+...+.....+..+|+||+.... .. ......
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111110000 01357899999999776655566677666665667788888876431 11 122344
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
.+.+.+++.++...++.+.+...+. .-..+....|++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999999999887643221 112456778899999999865544
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=4.1e-10 Score=110.67 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=116.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccc-eeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFE-KVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++. ... .+. ..++++.++.... ...+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-----NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGI-DVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-----CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSH-HHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccCh-HHHHHH
Confidence 46899999999999988643 2223899999999999999999873 222 121 2333433332221 111222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHh-hhCCc
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VAR-MMGST 289 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~-~~~~~ 289 (515)
+..+.... ..+ .+++.+||+||++......++.+...+.....++.+|+||.... +.. .....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22111000 011 34689999999987666666777777766556778888876542 111 12334
Q ss_pred ceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh-hHhhh
Q 040597 290 NIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA-AKVIG 344 (515)
Q Consensus 290 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa-i~~~~ 344 (515)
..+.+.+++.++..+++...+...+. .-..+....|++.|+|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999999999887642211 11245678899999999954 44443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.09 E-value=1e-10 Score=115.17 Aligned_cols=180 Identities=18% Similarity=0.122 Sum_probs=106.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|++..+..+...+............+.|+|++|+|||++|+.+++. .... ..+++.+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~--------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKP--------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSH---------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCCh---------
Confidence 46899999888888777532100123457889999999999999999873 3222 234443322111
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC------------------CCcEEEEE
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL------------------HGSKILVT 276 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~------------------~gs~IivT 276 (515)
..+...+... ..+..+|+||++..........+...+.... ++..+|.|
T Consensus 78 ------------~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 78 ------------GDLAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp ------------HHHHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred ------------HHHHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 1111111111 1356688999997655444444444433211 23456666
Q ss_pred cccHH-HHhh-hCC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhhh
Q 040597 277 TRNES-VARM-MGS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIGI 345 (515)
Q Consensus 277 TR~~~-v~~~-~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 345 (515)
|.... +... ... ...+.+.+++.++...++...+...+. .-..+....|++.|+|.|-.+..+..
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 65432 1111 111 257899999999999998887643221 12245678899999999987766543
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=3.9e-09 Score=103.77 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=114.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-cc-eeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FE-KVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+.+++. +... +. ..+.++.++..... .++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHHH
Confidence 46899999999999888643 2334899999999999999999873 2221 11 12333333211111 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHH-Hh-cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHH-Hhh-hCC
Q 040597 213 IEGLGESASSLSEFQSLMSHIHR-SI-EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESV-ARM-MGS 288 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~-~L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~ 288 (515)
+.. .... .+ .+++.++|+|+++..+...++.+...+.....++++|+||....- ... ...
T Consensus 97 ~~~----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 97 VKE----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHH----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHH----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 111 0100 01 257889999999877666667777777665667788888865431 111 112
Q ss_pred cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 289 TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 289 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
...+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 347899999999999999887643221 122456788999999999865544
No 17
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.87 E-value=1.3e-10 Score=95.41 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=51.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhh--hccCc--chhHHHHHh--chhccCCCchhhhhc
Q 040597 2 RLVSGVRQEVKKLTSNLQAIRAVLEDEEER--QMQHD--KEWPTARLK--LQIEGVDDDNALALA 60 (515)
Q Consensus 2 ~ll~gv~~~v~~L~~~l~~i~~~L~~a~~~--~~~~d--~~w~~~~~~--~~~e~~~~~~~~~~~ 60 (515)
.+++||++|+++|+++|++|++||.+|+++ +..+. +.|+.++++ |++||++|.|.+.+.
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999987 44444 899999998 999999999877654
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2e-08 Score=97.46 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=106.3
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc------ccceeeEEEeCCcccHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR------NFEKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~wv~~~~~~~~~~~~ 209 (515)
.+.||++|.+++...|...-. ......+.|+|++|+|||++++.+++...... .| ..+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~-~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM-SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 488999999999988865322 34567889999999999999999998432111 12 35677777777888999
Q ss_pred HHHHHHhcCCCCC-cccHHHHHHHHHHH--hcCCcEEEEecccCCCCcccccchhhhcccC-CCCc--EEEEEcccH---
Q 040597 210 KAIIEGLGESASS-LSEFQSLMSHIHRS--IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-LHGS--KILVTTRNE--- 280 (515)
Q Consensus 210 ~~il~~l~~~~~~-~~~~~~l~~~l~~~--L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-~~gs--~IivTTR~~--- 280 (515)
..|.+++.+.... ......+...+... -.+++++++||+++... .-+.+...+.+. ...+ .||.++...
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654222 12233333333332 24678999999996543 223343333211 1122 233334321
Q ss_pred --HH----HhhhCCcceeeccCCChhhhHHHHHHhhc
Q 040597 281 --SV----ARMMGSTNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 281 --~v----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
.+ ...+. ...+.+.+++.++..+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 11221 25789999999999999988864
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.80 E-value=3.3e-08 Score=99.11 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=115.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|++..++.+.+.+... .....+.|+|++|+||||+|+.+.+.......+.. ..+... .....+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhc
Confidence 35899999999999988643 23357889999999999999998873211111100 000000 00111110
Q ss_pred Hh-------cCC-CCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HH-
Q 040597 215 GL-------GES-ASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VA- 283 (515)
Q Consensus 215 ~l-------~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~- 283 (515)
.. ... .........+...+... ..+++.+||+||++..+....+.+...+.....+..+|++|.... +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 000 01112233333322211 135678999999977666666777777765555666777765432 21
Q ss_pred hhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 284 RMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 284 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
........+.+.+++.++...++.+.+...+. .-..+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11223468899999999999999876532211 1124557789999999998776554
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.78 E-value=2.9e-08 Score=97.11 Aligned_cols=180 Identities=12% Similarity=0.043 Sum_probs=111.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~--------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG--------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-----CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC---------
T ss_pred HHHhCCHHHHHHHHHHHhCC-----CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC---------
Confidence 46899999888888877532 223389999999999999999987311 11111 123334333111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHH--h-cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHh-hhCC
Q 040597 214 EGLGESASSLSEFQSLMSHIHRS--I-EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VAR-MMGS 288 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~-~~~~ 288 (515)
..........+... + .+++.++|+|+++.......+.+...+.....+..+|+||.... +.. ....
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 01111111111111 1 25688999999977665556667777765556777887776543 211 1223
Q ss_pred cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 289 TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 289 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
...+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 458999999999999999877643221 12245577888999998876543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=5.8e-08 Score=87.11 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++||+++++++.+.+... ....+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 3456789999999999999999874
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.62 E-value=7e-08 Score=90.16 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=91.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
..+.+.|+|++|+||||||+.+++. .......+.|++++..... + . ..+ +. -.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----------~-------~------~~~-~~-~~ 103 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----------S-------T------ALL-EG-LE 103 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----------C-------G------GGG-TT-GG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----------H-------H------HHH-Hh-cc
Confidence 4567899999999999999999873 3333334566765442110 0 0 000 01 13
Q ss_pred CcEEEEecccCCCCccc--ccchhhhcccC-CCCc-EEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHH
Q 040597 240 KKFFLLLDDVWDGDYNK--WEPFFFCVKNG-LHGS-KILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 240 kr~LlVLDdvw~~~~~~--~~~l~~~l~~~-~~gs-~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
++.+|||||++...... .+.+...+... ..+. ++|+||+.. .+...+.....+.+.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 46789999996644322 23344433211 1122 477777632 12222222368999999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
...+...+. .-..+....|++.++|.+-.+..+.
T Consensus 184 ~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 184 QRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 887642221 1224567788999999887665443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=6.2e-07 Score=88.98 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=111.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+.+.......+. ....++.+...... .+.+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-----TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHH
T ss_pred HHhhCCHHHHHHHHHHHhcC-----CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHH
Confidence 46899999999999888643 222389999999999999999987422111121 12233333322222 222222
Q ss_pred HHhcCC-CCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHhh-hCCcc
Q 040597 214 EGLGES-ASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VARM-MGSTN 290 (515)
Q Consensus 214 ~~l~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~ 290 (515)
..+... ....... .....-.++.-+|++|++..........+...+.......++|++|.... +... .....
T Consensus 111 ~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 221111 0000000 00011124567999999976655555666666665555566777664432 1111 11234
Q ss_pred eeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 291 IIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 291 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
.+.+.+++.++....+...+...+. .-..+..+.|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999998887643221 122456788999999998765443
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.52 E-value=9.3e-07 Score=90.47 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=101.8
Q ss_pred CccccccchH---HHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 135 GEVFSGVDEK---NELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 135 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+++. ....| +.++.......
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~---- 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVK---- 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHH----
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHH----
Confidence 4678887766 5666666532 3468899999999999999999873 33222 22221111111
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH-HhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEE-EEcccHH--H-Hhhh
Q 040597 212 IIEGLGESASSLSEFQSLMSHIHR-SIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL-VTTRNES--V-ARMM 286 (515)
Q Consensus 212 il~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~--v-~~~~ 286 (515)
+...+...... ...+++.+|+||+++..+....+.|...+..+ ...+| .||.+.. + ....
T Consensus 90 -------------~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 90 -------------EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp -------------HHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred -------------HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 11111111111 12467899999999877666666677666652 22333 3555542 1 1222
Q ss_pred CCcceeeccCCChhhhHHHHHHhhcCCCCC---CCccchHHHHHHHHHHcCCCChhhHh
Q 040597 287 GSTNIIFIEQLTEEECWSLFKRLAFFDRSF---EDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 287 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~---~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
....++.+.+++.++...++.+.+...... ....-..+..+.|++.++|.+-.+..
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 345688999999999999998876431110 11122345677888889988765543
No 25
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.46 E-value=3.7e-06 Score=82.85 Aligned_cols=170 Identities=10% Similarity=0.079 Sum_probs=102.6
Q ss_pred chHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc--------------------ccceeeEEEeCC
Q 040597 142 DEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR--------------------NFEKVIWVCVSD 201 (515)
Q Consensus 142 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~wv~~~~ 201 (515)
+..+.+.+.+..+ .-...+.++|+.|+|||++|+.+.+...... +++ ..++....
T Consensus 9 ~~~~~l~~~i~~~----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~ 83 (334)
T 1a5t_A 9 PDFEKLVASYQAG----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK 83 (334)
T ss_dssp HHHHHHHHHHHTT----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT
T ss_pred HHHHHHHHHHHcC----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc
Confidence 3445556655432 3456789999999999999998876311111 011 12221110
Q ss_pred cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEE
Q 040597 202 TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSI-----EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVT 276 (515)
Q Consensus 202 ~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivT 276 (515)
.......+++.+ +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|++
T Consensus 84 ------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 84 ------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp ------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 001112222222 22221 356789999999877666666777777665556777777
Q ss_pred cccHH-HHh-hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhhh
Q 040597 277 TRNES-VAR-MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVIG 344 (515)
Q Consensus 277 TR~~~-v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 344 (515)
|.+.. +.. .......+.+.+++.++..+.+.+.. . -..+.+..+++.++|.|..+..+.
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 66542 222 22335689999999999999988765 1 113456778999999998765544
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=3.3e-06 Score=81.09 Aligned_cols=184 Identities=15% Similarity=0.064 Sum_probs=99.5
Q ss_pred cCccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH
Q 040597 134 EGEVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 205 (515)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 205 (515)
-.+++|.+..++++.+.+..... .-...+.+.|+|++|+|||+||+.+++. ....| +.++.+.-
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~--- 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSEL--- 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGG---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHH---
Confidence 35689999999988887743100 0123456899999999999999999873 32222 22222211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCC-----------Ccccccchhhhcc-----cCCC
Q 040597 206 IRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDG-----------DYNKWEPFFFCVK-----NGLH 269 (515)
Q Consensus 206 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~-----------~~~~~~~l~~~l~-----~~~~ 269 (515)
..... ......+...+.......+.+|+||+++.. +......+...+. ....
T Consensus 88 -----------~~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 88 -----------VKKFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -----------CCCST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -----------HHhcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00000 011112222233333456789999999542 1111122222221 1223
Q ss_pred CcEEEEEcccHHHHh-h-hC--C-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC-ChhhHh
Q 040597 270 GSKILVTTRNESVAR-M-MG--S-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL-PLAAKV 342 (515)
Q Consensus 270 gs~IivTTR~~~v~~-~-~~--~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~ 342 (515)
+..||.||....... . .. . ...+.+...+.++..+++...+..... ..... ...++..+.|. |-.|..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 566777776543211 0 11 1 347889999999999999887643221 11112 45677777774 434443
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=3.5e-06 Score=86.24 Aligned_cols=161 Identities=18% Similarity=0.176 Sum_probs=96.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccce--eeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEK--VIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...+.|+|++|+||||||+.+++ .....+.. +++++.. .+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56789999999999999999998 34444432 3444432 2344444444322 11 12233333
Q ss_pred CCcEEEEecccCCCCc--ccccchhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHH
Q 040597 239 GKKFFLLLDDVWDGDY--NKWEPFFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965432 122334444432 23467788888752 22233333467899999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
.+.+...+- ..+ .+....|++.++|.+-.+.-
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 887642211 111 23466788888888765543
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.40 E-value=4.6e-06 Score=78.89 Aligned_cols=181 Identities=14% Similarity=0.086 Sum_probs=93.9
Q ss_pred CccccccchHHHHHHHHh---ccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLL---CESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++++.+.+. .... .....+.+.|+|++|+|||++|+.+++. .... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 467888877766655432 1110 0133456889999999999999999873 3222 23344333111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCC------------Cccccc---chhhhccc--CCCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDG------------DYNKWE---PFFFCVKN--GLHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~------------~~~~~~---~l~~~l~~--~~~g 270 (515)
. ........+...+.......+.+|+||+++.. +..... .+...+.. ...+
T Consensus 78 -----------~-~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 -----------V-IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -----------S-STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -----------h-ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 00011122223333333456789999999653 111111 22222222 1234
Q ss_pred cEEEEEcccHHHH-hh-hC--C-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 271 SKILVTTRNESVA-RM-MG--S-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 271 s~IivTTR~~~v~-~~-~~--~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
..||.||...... .. .. . ...+.+...+.++-.+++...+..... ..........+++.+.|.+-
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCH
Confidence 4566666543321 11 11 1 356788899999999998877643221 11122234678888888764
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.40 E-value=3.6e-06 Score=84.03 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=105.6
Q ss_pred CccccccchHHH---HHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe----CCcccHHH
Q 040597 135 GEVFSGVDEKNE---LLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV----SDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~----~~~~~~~~ 207 (515)
.+++|++...+. +.+.+... ....+.+.|+|++|+|||++|+.+.+. ...... .+.++. +.......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~---~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREG---KIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcC---CCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhH
Confidence 469999888665 44444432 223468999999999999999999873 322111 111221 11223333
Q ss_pred HHHHHHHHhcC---------------------CCC-------C-----cccHHHHHHHHHHH-h-cCC----cEEEEecc
Q 040597 208 VAKAIIEGLGE---------------------SAS-------S-----LSEFQSLMSHIHRS-I-EGK----KFFLLLDD 248 (515)
Q Consensus 208 ~~~~il~~l~~---------------------~~~-------~-----~~~~~~l~~~l~~~-L-~~k----r~LlVLDd 248 (515)
.+.+.+..... ... . .............. . .++ +.+|+||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 33333332110 000 0 11111222222111 1 233 45999999
Q ss_pred cCCCCcccccchhhhcccCCCCcEEEEEcc-----------c--HHH-HhhhCCcceeeccCCChhhhHHHHHHhhcCCC
Q 040597 249 VWDGDYNKWEPFFFCVKNGLHGSKILVTTR-----------N--ESV-ARMMGSTNIIFIEQLTEEECWSLFKRLAFFDR 314 (515)
Q Consensus 249 vw~~~~~~~~~l~~~l~~~~~gs~IivTTR-----------~--~~v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 314 (515)
+...+......+...+...... .++++|. + ..+ .........+.+.+++.++...++...+....
T Consensus 198 i~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9776655556666655543333 3444442 1 111 11122334589999999999999997764322
Q ss_pred CCCCccchHHHHHHHHHHcC-CCChhhHhh
Q 040597 315 SFEDYEKLEPIGRKIAHKCK-GLPLAAKVI 343 (515)
Q Consensus 315 ~~~~~~~~~~~~~~I~~~c~-glPLai~~~ 343 (515)
. .-..+....|++.+. |.|-.+..+
T Consensus 277 ~----~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 V----EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp C----CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred C----CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 122456778888887 777655443
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.39 E-value=1.3e-06 Score=86.34 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=104.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|++..++++..++............|.|+|++|+|||++|+.+++. ....| +.++.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~----------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE----------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC-----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc-----------
Confidence 46899999999888888643111234456899999999999999999762 32222 222222111
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC------------------CCcEEEEE
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL------------------HGSKILVT 276 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~------------------~gs~IivT 276 (515)
....+...+.. ..+..+|+||++..........+...+.... ++..+|.+
T Consensus 93 ----------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 93 ----------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp ----------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred ----------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 11111111211 2456789999997665444444544443221 12345555
Q ss_pred cccHH-HHhh-hCC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 277 TRNES-VARM-MGS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 277 TR~~~-v~~~-~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
|.... +... ... ...+.+.+++.++...++.+.+.... ..-..+....|++.+.|.|-.+..+
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 54322 1111 112 36799999999999999987764322 1123456778888999998555443
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=6.4e-07 Score=89.05 Aligned_cols=193 Identities=10% Similarity=0.074 Sum_probs=105.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc------cce---------------
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEK--------------- 193 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~--------------- 193 (515)
.+++|.+...+.+.+++... ..... +.|+|+.|+||||+|+.++.. +... ++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~---~~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP---RDLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT---TCCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhC---CCCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeee
Confidence 46889888888777776222 12233 899999999999999987762 1110 000
Q ss_pred -----eeEEEeCCcc-cHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC
Q 040597 194 -----VIWVCVSDTF-EEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG 267 (515)
Q Consensus 194 -----~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~ 267 (515)
.+.+..+... ......++++..+.....- .... .+. -+.+++-++|||++...+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 0000122222222111000 0000 000 02346679999999876665666677777654
Q ss_pred CCCcEEEEEcccHH-HHh-hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccch-HHHHHHHHHHcCCCChhhHhh
Q 040597 268 LHGSKILVTTRNES-VAR-MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKL-EPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 268 ~~gs~IivTTR~~~-v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~-~~~~~~I~~~c~glPLai~~~ 343 (515)
..+..+|++|.+.. +.. .......+.+.+++.++....+...+...+. .-. .+....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 55677887776532 211 1223468899999999999999877642221 111 245678889999987655443
No 32
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.35 E-value=8.2e-07 Score=79.11 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=37.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++|++.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-----TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-----CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 3456789999999999999999873
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.34 E-value=2.8e-06 Score=83.35 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=101.8
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.+++|.+..+..+.+++... ....++.+.|++|+|||++|+.+++. .. ...+.++.+.. . ...++.++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHH
Confidence 47899999999999888743 33467888899999999999999873 32 12344554331 1 111122111
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC-cccccchhhhcccCCCCcEEEEEcccHH-HHhh-hCCcce
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD-YNKWEPFFFCVKNGLHGSKILVTTRNES-VARM-MGSTNI 291 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~ 291 (515)
...... ...+++.+|++|+++... ....+.+...+.....+..+|+||.... +... ......
T Consensus 95 ~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 111000 012477899999997665 4455556655554334567777776543 1110 111357
Q ss_pred eeccCCChhhhHHH-------HHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhh
Q 040597 292 IFIEQLTEEECWSL-------FKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAA 340 (515)
Q Consensus 292 ~~l~~L~~~~a~~L-------f~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai 340 (515)
+.+.+++.++-.++ +...+...+. ...+ .+....|++.++|.+-.+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHH
Confidence 89999998874333 2222211111 1101 256777888898877644
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.30 E-value=8.8e-06 Score=77.61 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=90.6
Q ss_pred ccccccchHHHHHH-------HHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHH
Q 040597 136 EVFSGVDEKNELLN-------KLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRV 208 (515)
Q Consensus 136 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 208 (515)
.++|.....++++. .+.... ......+.|+|++|+|||+||+.+++. .. +.. +.++.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~--~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~------ 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDK------ 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS--SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGG------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC--CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHH------
Confidence 46677666655555 232111 345678999999999999999999873 22 221 22222210
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCC------Cc----ccccchhhhccc---CCCCcEEEE
Q 040597 209 AKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDG------DY----NKWEPFFFCVKN---GLHGSKILV 275 (515)
Q Consensus 209 ~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~------~~----~~~~~l~~~l~~---~~~gs~Iiv 275 (515)
+.. .........+...+......+..+|+||+++.. .. .....+...+.. ......||.
T Consensus 101 -------~~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -------MIG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------CTT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------hcC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 000 000011122223333333467899999998542 11 111223332221 122334666
Q ss_pred EcccHHHHhh---hCC-cceeeccCCCh-hhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 276 TTRNESVARM---MGS-TNIIFIEQLTE-EECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 276 TTR~~~v~~~---~~~-~~~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
||........ ... ...+.+++++. ++...++.+.. .. ..+....|++.+.|.+
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~---~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NF---KDKERTTIAQQVKGKK 230 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CS---CHHHHHHHHHHHTTSE
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CC---CHHHHHHHHHHhcCCC
Confidence 7766644332 122 45688889988 66666665431 11 1345677888888843
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=4.3e-06 Score=87.46 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=107.5
Q ss_pred CccccccchHHHHHHHHhccC------------CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc
Q 040597 135 GEVFSGVDEKNELLNKLLCES------------SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT 202 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 202 (515)
.+++|++..++++.+++.... ...+..+.+.|+|++|+||||+|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 578999999999999986410 00123578999999999999999999873 2 22 2334454443
Q ss_pred ccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCccc---ccchhhhcccCCCCcEEEEEccc
Q 040597 203 FEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNK---WEPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 203 ~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~---~~~l~~~l~~~~~gs~IivTTR~ 279 (515)
... .+....+........-..-...... .....+++.+||||+++...... +..+...+... +..||+++.+
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 332 2222222222111000000000000 00113578899999996543222 23444444432 2335555443
Q ss_pred HH---HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC-hhhHhhh
Q 040597 280 ES---VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP-LAAKVIG 344 (515)
Q Consensus 280 ~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~ 344 (515)
.. +.........+.+.+++.++..+++...+...+. ... .+....|++.++|.+ -++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 2222223457899999999999988876643221 111 234677889999954 4455443
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=7.5e-06 Score=79.56 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=88.8
Q ss_pred ccccccchHHHHHHHHhcc----------CCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH
Q 040597 136 EVFSGVDEKNELLNKLLCE----------SSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 205 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~----------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 205 (515)
+++|.+..++.+.+.+... .........+.|+|++|+|||++|+.+++............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4777777777776554311 000234557899999999999999988873222222222223433311
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCC---------CcccccchhhhcccCCCCcEEEEE
Q 040597 206 IRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDG---------DYNKWEPFFFCVKNGLHGSKILVT 276 (515)
Q Consensus 206 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivT 276 (515)
.+...... .....+...+... +..+|+||+++.. .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01111000 1111222222222 3459999999633 333345566666555556677888
Q ss_pred cccHHHHhh--hC-----C-cceeeccCCChhhhHHHHHHhhc
Q 040597 277 TRNESVARM--MG-----S-TNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 277 TR~~~v~~~--~~-----~-~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
|........ .. . ...+.+.+++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 764332111 01 1 36789999999999999987764
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=1e-05 Score=79.95 Aligned_cols=173 Identities=11% Similarity=0.080 Sum_probs=101.4
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccc-eeeEEEeCCcccHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFE-KVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~~~~~~~~~~~~~~i 212 (515)
.+++|.+..++.+...+..+ ..+.+.++|++|+||||+|+.+++. +.. .+. .+.-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCccccc--------
Confidence 35778877777777777533 2223899999999999999998873 211 111 111222222111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHH------hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH-HHh-
Q 040597 213 IEGLGESASSLSEFQSLMSHIHRS------IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES-VAR- 284 (515)
Q Consensus 213 l~~l~~~~~~~~~~~~l~~~l~~~------L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~- 284 (515)
.+.+.+.+... ..+.+-++|+|+++.......+.+...+........+|++|.... +..
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 11111111111 123467899999976655555666666655445666777665432 111
Q ss_pred hhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 285 MMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 285 ~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
.......+.+.+++.++..+.+...+....- .-..+..+.|++.++|.+--
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 1222457889999999988888776532211 11234567788888987764
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.19 E-value=1.8e-05 Score=77.46 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=87.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
....+.|+|++|+||||||+.+++. ....-..++++++. .+...+...+... .... +...+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 3467899999999999999999873 32221223455432 2333333333211 1111 12222 2
Q ss_pred CcEEEEecccCCCCc--ccccchhhhccc-CCCCcEEEEEcccH---------HHHhhhCCcceeeccCCChhhhHHHHH
Q 040597 240 KKFFLLLDDVWDGDY--NKWEPFFFCVKN-GLHGSKILVTTRNE---------SVARMMGSTNIIFIEQLTEEECWSLFK 307 (515)
Q Consensus 240 kr~LlVLDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 307 (515)
+..+|+|||+..... ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+ +.++...++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999965432 122334444321 12355677777532 2222233336789999 9999999998
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCCCh
Q 040597 308 RLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL 338 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL 338 (515)
..+...+. .-..+....|++.+ |.+-
T Consensus 177 ~~~~~~~~----~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNL----ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTC----CCCHHHHHHHHHHC-SSHH
T ss_pred HHHHhcCC----CCCHHHHHHHHHhC-CCHH
Confidence 87743221 11245567788888 7654
No 39
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=1.6e-06 Score=74.28 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=67.8
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.++|+...+.++.+.+..-. ....-|.|+|.+|+|||++|+.+++... ....+ .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc----------
Confidence 47899999999988775432 1223478999999999999999987421 11222 23 665542221
Q ss_pred hcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEccc
Q 040597 216 LGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 216 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 279 (515)
.... ..+.. ...-.|+||+++.........+...+.......+||.||..
T Consensus 66 --------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 11111 13357899999776655555666666544445677777764
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.5e-05 Score=77.17 Aligned_cols=147 Identities=12% Similarity=-0.010 Sum_probs=91.5
Q ss_pred cchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchh-hhcccceeeEEEeCC-cccHHHHHHHHHHHhcC
Q 040597 141 VDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDE-VKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGE 218 (515)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~ 218 (515)
++-++.+.+.+..+ ..+...++|++|+||||+|+.+.+... .........+++.++ ...+ +..++++..+..
T Consensus 3 ~~~~~~L~~~i~~~-----~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~~~~ 76 (305)
T 2gno_A 3 KDQLETLKRIIEKS-----EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDFLNY 76 (305)
T ss_dssp -CHHHHHHHHHHTC-----SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCC-----CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHHHhh
Confidence 34455566666432 267899999999999999999876310 111122234444332 1222 222333333322
Q ss_pred CCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH-HHHhhhCCcceeeccCC
Q 040597 219 SASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE-SVARMMGSTNIIFIEQL 297 (515)
Q Consensus 219 ~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L 297 (515)
.+ ..+++-++|+|+++..+....+.+...+....+.+.+|++|.+. .+...+..- .+.+.++
T Consensus 77 ~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 77 SP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp CC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred cc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 11 13457789999998877777777888887666677777766543 333333334 8999999
Q ss_pred ChhhhHHHHHHhh
Q 040597 298 TEEECWSLFKRLA 310 (515)
Q Consensus 298 ~~~~a~~Lf~~~~ 310 (515)
++++....+.+..
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999888765
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.14 E-value=3.6e-05 Score=75.33 Aligned_cols=183 Identities=17% Similarity=0.130 Sum_probs=100.5
Q ss_pred CccccccchHHHHHHHHhcc-------CCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCE-------SSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++.+.+.+... .......+-+.|+|++|+|||+||+.+++. ....| +.++.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 46889988888888776210 011234567899999999999999999873 33222 222221 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HHhcCCcEEEEecccCCCCcc-----------cccchhhhcc---cCCCCcE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIH-RSIEGKKFFLLLDDVWDGDYN-----------KWEPFFFCVK---NGLHGSK 272 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVLDdvw~~~~~-----------~~~~l~~~l~---~~~~gs~ 272 (515)
+ .... ....+.....+. ..-..++.+|+||+++..... ....+...+. ....+..
T Consensus 87 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 1100 011122222222 222456789999999643210 0122322232 1233455
Q ss_pred EEEEcccHH-----HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC-ChhhHhhh
Q 040597 273 ILVTTRNES-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL-PLAAKVIG 344 (515)
Q Consensus 273 IivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 344 (515)
||.||.... +... -...+.+...+.++-.+++...+..... .........|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555665432 2221 1356788888999999999887643221 11234567888888874 43444433
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=5.3e-06 Score=73.80 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
...+.|+|++|+||||||+.+++.......+ .+.+++ ..++...+.......... .....+ . +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~~----~-~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKTV----L-N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHHH----H-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchHH-----HHHHHh----c-C
Confidence 4689999999999999999998842212222 233443 344444444443322111 122222 1 4
Q ss_pred cEEEEecccCCCCccccc--chhhhcccC-CCCcEEEEEccc
Q 040597 241 KFFLLLDDVWDGDYNKWE--PFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTTR~ 279 (515)
.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 568999999743322332 333333322 246678888864
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.11 E-value=7.6e-06 Score=90.94 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=80.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-----c-c-eeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-----F-E-KVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F-~-~~~wv~~~~~~~~~~ 207 (515)
..++||++++.++++.|... ....+.|+|++|+|||++|+.+++. +... . . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~-----~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-----TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-----SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC--------
T ss_pred cccCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc---
Confidence 35899999999999998743 2345689999999999999999873 3211 1 1 233333322100
Q ss_pred HHHHHHHHhcCCCCCcccHHH-HHHHHHHHhc-CCcEEEEecccCCCC--------cccccchhhhcccCCCCcEEEEEc
Q 040597 208 VAKAIIEGLGESASSLSEFQS-LMSHIHRSIE-GKKFFLLLDDVWDGD--------YNKWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~-l~~~l~~~L~-~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTT 277 (515)
......+... +...+...-. +++.+|++|+++... ....+.+...+..+ +..+|.+|
T Consensus 240 -----------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at 306 (854)
T 1qvr_A 240 -----------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEE
T ss_pred -----------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEec
Confidence 0000011122 2222222222 468999999996532 11122344444332 33455555
Q ss_pred ccHHHH-----h-hhCCcceeeccCCChhhhHHHHHHh
Q 040597 278 RNESVA-----R-MMGSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 278 R~~~v~-----~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
...... . .......+.+++++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 433321 1 1112346899999999999988744
No 44
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.10 E-value=5e-06 Score=75.45 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
..+.|+|++|+|||+||+.+++. .......++|++++ .+...+....... ........+. ..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~----~~- 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ-----TMNEKLDYIK----KV- 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C-----CCHHHHHHHH----HS-
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc-----hHHHHHHHhc----CC-
Confidence 67899999999999999999983 43333445666543 3334443322211 1122222222 22
Q ss_pred EEEEecccCCCCcccccc--hhh-hcccC-CCCcEEEEEccc
Q 040597 242 FFLLLDDVWDGDYNKWEP--FFF-CVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~~--l~~-~l~~~-~~gs~IivTTR~ 279 (515)
-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 399999996644334432 222 23221 234568888763
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.07 E-value=6.8e-05 Score=74.36 Aligned_cols=184 Identities=16% Similarity=0.090 Sum_probs=98.6
Q ss_pred CccccccchHHHHHHHHhcc---C----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCE---S----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++.+.+.+... . ......+-|.|+|++|+|||+||+.+++. ....| +.++.+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46889988888888776311 0 00123456889999999999999999983 32222 222221 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc-----------cccchhhhccc---CCCCcEE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN-----------KWEPFFFCVKN---GLHGSKI 273 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~-----------~~~~l~~~l~~---~~~gs~I 273 (515)
+ .... .. .....+...+...-..++.+|+||+++..... ....+...+.. ...+..|
T Consensus 120 l----~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 1110 00 01111222222222457899999999643211 01223222221 1234455
Q ss_pred EEEcccHH-----HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC-ChhhHhhh
Q 040597 274 LVTTRNES-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL-PLAAKVIG 344 (515)
Q Consensus 274 ivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 344 (515)
|.||.... +.. .....+.+...+.++-.+++...+..... .-.......|++.+.|. |-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55665432 222 22356788888989888888877643211 11134567889999885 43454443
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=0.00012 Score=70.55 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=97.6
Q ss_pred CccccccchHHHHHHHHhccC-------CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES-------SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++.+.+.+.... .-....+.+.|+|++|+|||++|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 468999988888887763210 00123567899999999999999999873 2222 22344332110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHH-HHHHhcCCcEEEEecccCCCCcc-----------cccchhhhccc---C--CCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSH-IHRSIEGKKFFLLLDDVWDGDYN-----------KWEPFFFCVKN---G--LHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~-l~~~L~~kr~LlVLDdvw~~~~~-----------~~~~l~~~l~~---~--~~g 270 (515)
... ......... +......++.+|+||++...... ....+...+.. . ..+
T Consensus 93 -----------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 000 111222222 22223456789999999543211 00112222211 1 123
Q ss_pred cEEEEEcccHH-----HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh-hhHhh
Q 040597 271 SKILVTTRNES-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL-AAKVI 343 (515)
Q Consensus 271 s~IivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 343 (515)
..||.||.... +...+ ...+.+...+.++...++...+..... .-.......|++.+.|.+- +|..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666665432 22222 246777777788877777766532211 1123456788999999886 44444
No 47
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.05 E-value=2.9e-05 Score=77.12 Aligned_cols=185 Identities=9% Similarity=0.033 Sum_probs=99.6
Q ss_pred CccccccchHHHHHHHHhcc---CC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCE---SS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++++.+.+... .. .....+.|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899998888888776420 00 0134567899999999999999999873 2222 23344432111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCcEEEEecccCCCCc-----------ccccchhhhccc----CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHR-SIEGKKFFLLLDDVWDGDY-----------NKWEPFFFCVKN----GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~~~-----------~~~~~l~~~l~~----~~~gs 271 (515)
.. ..........+.. .-..++.+|+||+++.... .....+...+.. ...+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 0111112222222 2245678999999943210 111223333321 12234
Q ss_pred EEEEEcccHH-HHhh-hCC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC-ChhhHhhh
Q 040597 272 KILVTTRNES-VARM-MGS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL-PLAAKVIG 344 (515)
Q Consensus 272 ~IivTTR~~~-v~~~-~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 344 (515)
.||.||.... +... ... ...+.+...+.++..+++...+..... .-.......|++.+.|. |-.|..+.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555664332 1111 111 346788888888888888776633211 11235677889999884 44555443
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.04 E-value=0.00012 Score=71.42 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=97.8
Q ss_pred CccccccchHHHHHHHHhcc---C----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhh-hcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLCE---S----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~~~~~~~~~ 206 (515)
.+++|.++.++.+.+.+... . ......+.|.|+|++|+|||+||+.+++. . ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANNST---FFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTSCE---EEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCCCc---EEEEEhHHHH---
Confidence 46788887777777665310 0 00234578899999999999999999973 2 111 2233333211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc-------c----ccchhhhccc---CCCCcE
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN-------K----WEPFFFCVKN---GLHGSK 272 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~-------~----~~~l~~~l~~---~~~gs~ 272 (515)
..... .....+...+...-..++.+|+||+++..... . ...+...+.. ...+..
T Consensus 84 -----------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 -----------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00000 11112222222222467889999999643110 0 1112222221 123444
Q ss_pred EEEEcccHH-----HHhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh-hhHhhh
Q 040597 273 ILVTTRNES-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL-AAKVIG 344 (515)
Q Consensus 273 IivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 344 (515)
||.||.... +.. .-...+.+...+.++-.+++......... .-.......|++.+.|..- .|..+.
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555554332 222 12356788888888888888876632211 1123456788999988743 355443
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.00 E-value=2.9e-05 Score=75.42 Aligned_cols=121 Identities=13% Similarity=0.202 Sum_probs=65.8
Q ss_pred ccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.++|....++.+...+.... ........+.|+|++|+|||++|+.+++. ....-...+.++++.-.... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 47788888888877775421 11223468999999999999999999873 32222223455544322211 1111
Q ss_pred HHHHhcCCCC--CcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcc
Q 040597 212 IIEGLGESAS--SLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 212 il~~l~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
+ ++.... .......+...+. .....+|+||++...+......+...+.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 1 221111 0000012222222 2345799999997766555556665554
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.99 E-value=3.2e-05 Score=79.75 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=78.9
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhccc-----ceeeEEEeCCcccHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF-----EKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~~~wv~~~~~~~~~~~~ 209 (515)
..++||+.+++.+++.|... ...-+.|+|++|+|||++|+.+++ .+...+ ...-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-----~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC-------
Confidence 35899999999999998743 233567999999999999999987 332211 11112221111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHh-----
Q 040597 210 KAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVAR----- 284 (515)
Q Consensus 210 ~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~----- 284 (515)
....+ .-......+...+ -..++.+|++|. .....+.+...+..+ ..++|.+|.......
T Consensus 246 ----~~~~g--~~e~~~~~~~~~~---~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ----TKYRG--EFEDRLKKVMDEI---RQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTTC
T ss_pred ----ccccc--hHHHHHHHHHHHH---HhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcC
Confidence 00000 0011222222222 235678999991 112223344443322 345555555433111
Q ss_pred --hhCCcceeeccCCChhhhHHHHHHhh
Q 040597 285 --MMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 285 --~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.......+.+.+.+.++...++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11124478999999999999998765
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=0.0003 Score=71.89 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred CccccccchHHHHHHHHhcc----C---CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCE----S---SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++.+.+.+... . ......+.|.|+|++|+|||+||+.+++. . ....++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 46888888888888776310 0 00134568899999999999999999873 2 112234333321
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc-------ccc----cchhhhccc---CCCCcEE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY-------NKW----EPFFFCVKN---GLHGSKI 273 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~-------~~~----~~l~~~l~~---~~~gs~I 273 (515)
+........ ......+.. ..-..++.+|+||+++.... ... ..+...+.. ...+..|
T Consensus 204 ----l~~~~~g~~--~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 ----LVSKWLGES--EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------C--CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred ----HHhhhcchH--HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 111111111 112222222 22245788999999965311 011 112222221 1234556
Q ss_pred EEEcccHHHH-hh-hCC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC-hhhHhh
Q 040597 274 LVTTRNESVA-RM-MGS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP-LAAKVI 343 (515)
Q Consensus 274 ivTTR~~~v~-~~-~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~ 343 (515)
|.||...... .. ... ...+.+...+.++-..+|...+..... .-.......|++.+.|.. -.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666543211 11 112 346778888888888888777632211 112345678899999854 344443
No 52
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.90 E-value=6.8e-06 Score=70.18 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=61.9
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.++|+...+.++.+.+..-. ....-|.|+|.+|+|||++|+.+++... ..+.++++. -....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~---~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA---KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH---TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHh-------
Confidence 57898888888888775421 1223477999999999999999887321 122222221 00010
Q ss_pred hcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC-CCCcEEEEEccc
Q 040597 216 LGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-LHGSKILVTTRN 279 (515)
Q Consensus 216 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTTR~ 279 (515)
...+.+. .+.-.|+||++..........+...+... ..+.++|.||..
T Consensus 67 --------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 22357899999776655455555555432 345677777753
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=0.00026 Score=68.45 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=96.5
Q ss_pred CccccccchHHHHHHHHhccC--------CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES--------SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.+++|.+..++++.+.+...- ..-...+.+.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 468888887777777664210 00134567899999999999999999973 3222 22222 12
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc--------------ccccchhhhccc--CCCC
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY--------------NKWEPFFFCVKN--GLHG 270 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~--------------~~~~~l~~~l~~--~~~g 270 (515)
.+. ........ .. +...+.......+.+|+||++..... .....+...+.. ...+
T Consensus 84 ~l~----~~~~g~~~--~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELL----TMWFGESE--AN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHH----HHHHTTCT--TH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHH----hhhcCchH--HH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222 22211111 11 22223333345689999999953110 011233333322 1234
Q ss_pred cEEEEEcccHHHH-hh-hC---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 271 SKILVTTRNESVA-RM-MG---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 271 s~IivTTR~~~v~-~~-~~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
..||.||...... .. .. -...+.+...+.++-.+++......... ..... ...++..+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 5566666544322 11 11 2357889999998888888776633221 11112 23566677777754
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.87 E-value=0.00016 Score=72.64 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=97.1
Q ss_pred CccccccchHHHHHHHHhccCC-------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++.+.+.+..... .....+.+.|+|++|+|||+||+.+++. .... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 4789999998888887732100 0123467899999999999999999863 2222 233333321110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCC-----------cccccchhhhccc----CCCCcE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGD-----------YNKWEPFFFCVKN----GLHGSK 272 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~-----------~~~~~~l~~~l~~----~~~gs~ 272 (515)
. .. .....+...+...-...+.+|+||+++... ......+...+.. ......
T Consensus 188 --------~----~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 --------Y----VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred --------c----cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00 011111222222223466899999995421 0011122222221 112334
Q ss_pred EEEEcccHH-HHhh-hCC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCCh-hhHhh
Q 040597 273 ILVTTRNES-VARM-MGS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPL-AAKVI 343 (515)
Q Consensus 273 IivTTR~~~-v~~~-~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 343 (515)
||.||.... +... ... ...+.+...+.++-..++...+..... .-..+....|++.+.|..- +|..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 555554322 1111 112 246788889999999998877643221 1223456788999988654 44443
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.82 E-value=7.5e-05 Score=70.74 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=33.5
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.++|....+.++.+.+..-. .....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~---~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA---PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT---TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 57899888888887765432 12246789999999999999999874
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.78 E-value=0.00018 Score=79.00 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=85.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc------cceeeE-EEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN------FEKVIW-VCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~w-v~~~~~~~~~~ 207 (515)
..++||+.+++++++.|... ...-+.|+|++|+|||++|+.+++. +... ..+.+| ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCccCCHHHHHHHHHHHhcc-----CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH-----
Confidence 46899999999999998743 3345789999999999999998873 2111 122222 111110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCcEEEEecccCCCC--------ccc-ccchhhhcccCCCCcEEEEEc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSI-EGKKFFLLLDDVWDGD--------YNK-WEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVLDdvw~~~--------~~~-~~~l~~~l~~~~~gs~IivTT 277 (515)
+.. .......+.....+.+.+ ..++.+|++|+++... ... ...+...+.. .+..+|.+|
T Consensus 254 --------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at 322 (758)
T 1r6b_X 254 --------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 322 (758)
T ss_dssp ---------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEE
T ss_pred --------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEe
Confidence 000 111122232223333333 4467899999996431 111 1122222222 244566666
Q ss_pred ccHHHHhhh-------CCcceeeccCCChhhhHHHHHHhh
Q 040597 278 RNESVARMM-------GSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 278 R~~~v~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
......... .....+.+...+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544322111 113468899999999888887544
No 57
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.76 E-value=0.00014 Score=74.82 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=60.0
Q ss_pred EEEEecccCCCCcccccchhhhcccCCCCcEEE-EE---------cc----cHHH-HhhhCCcceeeccCCChhhhHHHH
Q 040597 242 FFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKIL-VT---------TR----NESV-ARMMGSTNIIFIEQLTEEECWSLF 306 (515)
Q Consensus 242 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vT---------TR----~~~v-~~~~~~~~~~~l~~L~~~~a~~Lf 306 (515)
-++++|+++..+.+..+.|...+...... .+| .| |. ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999887777777777777654444 344 34 32 1111 112233456799999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHc-CCCChhhHhh
Q 040597 307 KRLAFFDRSFEDYEKLEPIGRKIAHKC-KGLPLAAKVI 343 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~I~~~c-~glPLai~~~ 343 (515)
...+...+. .-..+....|++.+ +|.|-.+..+
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 877632111 11234567788888 7877654443
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.75 E-value=6e-05 Score=73.01 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=36.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|+...+.++.+.+..-. .....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHH
Confidence 357899988888888776532 2234578999999999999999987
No 59
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00026 Score=68.43 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred CccccccchHHHHHHHHhcc--C-C------CCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCE--S-S------EQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~--~-~------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.+..++.+...+... . . .......+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46889998888888777531 0 0 012345688999999999999999987
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.72 E-value=2.5e-05 Score=67.13 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=49.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGK 240 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~k 240 (515)
-..+.|+|+.|+|||||++.++.. ....-..+++++...-... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 357899999999999999999873 2221112556654432111 11 234
Q ss_pred cEEEEecccCCCCcccccchhhhccc-CCCCc-EEEEEccc
Q 040597 241 KFFLLLDDVWDGDYNKWEPFFFCVKN-GLHGS-KILVTTRN 279 (515)
Q Consensus 241 r~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs-~IivTTR~ 279 (515)
.-+|||||+...+...-+.+...+.. ...|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56889999965443222233333331 11233 48888873
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0011 Score=65.96 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=93.2
Q ss_pred CccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.++.|-++.+++|.+.+.- .. -.-..++-|.++|++|.|||.||+.+++ .....| +.++.+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh---
Confidence 3566777766666655432 10 0124457789999999999999999998 343333 233333211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH-HHhcCCcEEEEecccCCCCc--------cc------ccchhhhccc--CCC
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIH-RSIEGKKFFLLLDDVWDGDY--------NK------WEPFFFCVKN--GLH 269 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVLDdvw~~~~--------~~------~~~l~~~l~~--~~~ 269 (515)
.... .+.+.....+. ..-...+++|++|+++.-.. .. ...+...+.. ...
T Consensus 220 -----------sk~v--Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 220 -----------QKYI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -----------CSST--THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -----------cccc--chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0110 11122222222 22246789999999964210 00 1122222222 223
Q ss_pred CcEEEEEcccHHH-----HhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 270 GSKILVTTRNESV-----ARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 270 gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
+-.||.||..... ...-.-...+.++..+.++-.++|..+.-.... ....+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 4445666654322 221122567888888888888888766532211 11112 456788888754
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=0.00016 Score=79.19 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=79.2
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc-----cceeeEEEeCCcccHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-----FEKVIWVCVSDTFEEIRVA 209 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~ 209 (515)
..++|++.+++++...|... ...-+.|+|++|+|||++|+.+++. +... ....-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-----~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC----------
T ss_pred CCccCchHHHHHHHHHHhCC-----CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc--------
Confidence 36899999999999999743 2334789999999999999998873 3111 01111221111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHHh-----
Q 040597 210 KAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVAR----- 284 (515)
Q Consensus 210 ~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~----- 284 (515)
..... ..-......+ +......++.+|++|.- . ...+.+...+.. ...++|.||.......
T Consensus 245 ---g~~~~--G~~e~~l~~~---~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYR--GEFEDRLKKV---MDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ---ccccc--chHHHHHHHH---HHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 00000 0011122222 22233467889999921 1 122233333332 2345666665443111
Q ss_pred --hhCCcceeeccCCChhhhHHHHHHhh
Q 040597 285 --MMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 285 --~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.......+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 01123578999999999999998654
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00097 Score=67.33 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=92.3
Q ss_pred ccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|-++.+++|.+.+.. .. -.-..++-|.++|++|.|||.||+.+++ .....| +.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC---
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc---
Confidence 456777766666655432 10 0124567899999999999999999998 333332 2333332110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HHhcCCcEEEEecccCCCC------ccc--------ccchhhhcc--cCCCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIH-RSIEGKKFFLLLDDVWDGD------YNK--------WEPFFFCVK--NGLHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVLDdvw~~~------~~~--------~~~l~~~l~--~~~~g 270 (515)
.. ..........+. ..-...+++|++|+++..- ... ...+...+. ....+
T Consensus 254 -----------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -----------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -----------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -----------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 11 111122222222 2235678999999996421 000 112222222 12234
Q ss_pred cEEEEEcccHHHHhh-h-C---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 271 SKILVTTRNESVARM-M-G---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 271 s~IivTTR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
..||.||-....... + . -...+.++..+.++-.++|..+...... ....+ ...|++.+.|+-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 556767754433221 1 1 1456778777777777787766532221 11112 356777787754
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00071 Score=68.19 Aligned_cols=49 Identities=22% Similarity=0.151 Sum_probs=35.1
Q ss_pred CccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++.|-++.+++|.+.+.. .. -+-..++-|.++|++|+|||+||+.+++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567777777777665532 10 0124567799999999999999999998
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.62 E-value=6.1e-05 Score=82.62 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=87.2
Q ss_pred CccccccchHHHHHHHHhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+..++.+...+..... ...+...+.++|++|+|||++|+.+++. ....-...+.++++.-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4688999988888887764321 1123447999999999999999999873 3222223344554431110
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccC-----------CCCcEEEEEccc
Q 040597 211 AIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNG-----------LHGSKILVTTRN 279 (515)
Q Consensus 211 ~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTTR~ 279 (515)
... ....+...++ .....+|+||++..........|...+..+ .....||+||..
T Consensus 564 ---------~~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------ccc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 0111112222 223458999999776655566666655432 124578888862
Q ss_pred -----HH----HHhhh-----CC-cceeeccCCChhhhHHHHHHhh
Q 040597 280 -----ES----VARMM-----GS-TNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 280 -----~~----v~~~~-----~~-~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.. +...+ .. ..++.+.+++.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 11111 11 3578888888888777766543
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.61 E-value=0.00042 Score=71.50 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=95.4
Q ss_pred CccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.+++|.+..++++.+.+..... .....+-|.|+|++|+|||++|+.+++. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 3588988888888877643100 0123456899999999999999999873 2222 22333211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc-----------ccccchhhhccc--CCCCcEE
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY-----------NKWEPFFFCVKN--GLHGSKI 273 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~I 273 (515)
+... .. ......+...+.....+++.+|+||+++.... .....|...+.. ...+..|
T Consensus 274 -----l~~~----~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMSK----LA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHTS----CT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhhh----hc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111 00 11122233334444456788999999942111 111223333432 2224455
Q ss_pred EEEcccHH-HHhhh----CCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCC
Q 040597 274 LVTTRNES-VARMM----GSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGL 336 (515)
Q Consensus 274 ivTTR~~~-v~~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~gl 336 (515)
|.||.... +...+ .-...+.+...+.++-.+++...+..... ..... ..++++.+.|.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGH 406 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTC
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCC
Confidence 55665442 21111 12346889999999999999877632211 11112 34566777775
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.60 E-value=0.00028 Score=69.32 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=92.0
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
..++|.+..++.+...+............+.|+|++|+||||||+.+++. ....|. ..+.+-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~---------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVK---------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCS----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcC----------
Confidence 35778776666665555321000123467899999999999999999873 322221 111110000
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC------------------CCcEEE-E
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL------------------HGSKIL-V 275 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~------------------~gs~Ii-v 275 (515)
...+...+ ..+ .++.++++|++........+.+...+.... +...++ .
T Consensus 90 -----------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 90 -----------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp -----------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred -----------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 11111111 112 234577788875443222222322221110 011222 3
Q ss_pred EcccHHHHhhh-CC-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChhhHhh
Q 040597 276 TTRNESVARMM-GS-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKVI 343 (515)
Q Consensus 276 TTR~~~v~~~~-~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 343 (515)
|++...+.... .. ...+.+++.+.++-.+++.+.+.... ..-..+.+..|++.++|.|-.+..+
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~----~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD----VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 44443322211 11 23578999999999999988763221 1223466888999999999655433
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.00092 Score=62.77 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=77.5
Q ss_pred CccccccchHHHHHHH---HhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNK---LLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~---L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.+..++++.+. +..... .....+-+.|+|++|+||||||+.+++. ....| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 4678887766665543 322100 0112345889999999999999999873 32222 3333222100
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc--------------cccchhhhccc--CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN--------------KWEPFFFCVKN--GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~--------------~~~~l~~~l~~--~~~gs 271 (515)
... ......+...+.......+.++++|+++..... ....+...+.. ...+.
T Consensus 84 -----------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000 011222333333333456789999998431110 01112222221 12344
Q ss_pred EEEEEcccHH-HHhhh-C---CcceeeccCCChhhhHHHHHHhh
Q 040597 272 KILVTTRNES-VARMM-G---STNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 272 ~IivTTR~~~-v~~~~-~---~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.||.||.... +.... . -...+.+...+.++-.+++....
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 5666665443 21111 1 13467777777777777776654
No 69
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0022 Score=64.76 Aligned_cols=176 Identities=15% Similarity=0.062 Sum_probs=91.4
Q ss_pred ccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|-++.+++|.+.+.. .. -.-..++-|.++|++|.|||.||+.+++ +....| +.++.+.-
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L----- 279 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL----- 279 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG-----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh-----
Confidence 566777766666654321 00 0124567889999999999999999998 343333 23332221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHH-HHHHhcCCcEEEEecccCCCCc------cc--------ccchhhhccc--CCCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSH-IHRSIEGKKFFLLLDDVWDGDY------NK--------WEPFFFCVKN--GLHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~-l~~~L~~kr~LlVLDdvw~~~~------~~--------~~~l~~~l~~--~~~g 270 (515)
.... ....+..... +...-...+++|++|+++.... .. ...+...+.. ...+
T Consensus 280 ---------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 280 ---------VQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ---------CCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ---------hccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1111 1111222222 2222356789999999864210 00 0111222221 1223
Q ss_pred cEEEEEcccHHH-----HhhhCCcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 271 SKILVTTRNESV-----ARMMGSTNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 271 s~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
..||.||-.... ...-.-...+.+...+.++-.++|..+...-. ....-+ ...|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 345556654322 11111256788888888888888876653221 111112 356788888864
No 70
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.49 E-value=0.0012 Score=67.63 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=91.7
Q ss_pred CccccccchHHHHHHHHhccCC-------CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-------EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.++.++++.+.+..-.. .....+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4678887766666554321000 0112344889999999999999999873 32222 23333221100
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc--------------cccchhhhccc--CCCCc
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN--------------KWEPFFFCVKN--GLHGS 271 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~--------------~~~~l~~~l~~--~~~gs 271 (515)
.. ......+...+.......+.+|+||+++..... ....+...+.. ...+.
T Consensus 89 ------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 011122333344444567899999999542110 11223222221 12345
Q ss_pred EEEEEcccHHHHh-h-hC---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 272 KILVTTRNESVAR-M-MG---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 272 ~IivTTR~~~v~~-~-~~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
.||.||....... . .. -...+.+...+.++-.+++..++.... ...... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 5666666554322 1 11 134778888887777777776653221 111111 344677787876
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00054 Score=69.13 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=91.5
Q ss_pred CccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.++.|-++.+++|.+.+.. .. ..-..++-|.++|++|.|||.||+.+++ .....| +.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhh----
Confidence 3567777777777665321 10 0124567899999999999999999998 333332 23333221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCcEEEEecccCCC------Ccc----c----ccchhhhccc--CCC
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHR-SIEGKKFFLLLDDVWDG------DYN----K----WEPFFFCVKN--GLH 269 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~~------~~~----~----~~~l~~~l~~--~~~ 269 (515)
..... ...+.....+.. .-...+++|++|+++.- ... . ...+...+.. ...
T Consensus 252 ----------~~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 ----------VQMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ----------CSSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ----------hhccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 11111 111222222222 22456899999998421 000 0 1122222222 122
Q ss_pred CcEEEEEcccHHHHhh-h-C---CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 270 GSKILVTTRNESVARM-M-G---STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 270 gs~IivTTR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
+-.||.||........ + . -...+.++..+.++-.++|..+.-.-.. ...-+ ...|++.+.|+-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 3445657655432221 1 1 1456788888888777887755432111 11112 356778887754
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0017 Score=64.83 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=90.4
Q ss_pred ccccccchHHHHHHHHhc---cCC-----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLC---ESS-----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~---~~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|-++.+++|.+.+.. ... .-..++-|.++|++|.|||.||+.+++ .....| +.++.+.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~------ 251 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSE------ 251 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGG------
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHH------
Confidence 456677766666655431 110 124467899999999999999999998 333333 2233222
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcEEEEecccCCCCc------c--------cccchhhhcc--cCCCC
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKFFLLLDDVWDGDY------N--------KWEPFFFCVK--NGLHG 270 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVLDdvw~~~~------~--------~~~~l~~~l~--~~~~g 270 (515)
+.... ..+.+.....+... -...+++|++|+++.... . ....+...+. ....+
T Consensus 252 --------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 252 --------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp --------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred --------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 11111 11122222333222 245789999999864210 0 0111222222 12234
Q ss_pred cEEEEEcccHHHHhh-h-C--C-cceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCC
Q 040597 271 SKILVTTRNESVARM-M-G--S-TNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLP 337 (515)
Q Consensus 271 s~IivTTR~~~v~~~-~-~--~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glP 337 (515)
..||.||-....... + . . ...+.+..-+.++-.++|..+.-... .....+ ...|++.+.|+-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 455666654433221 1 1 1 34577777777777788876653221 111112 356777787754
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.37 E-value=0.0013 Score=71.52 Aligned_cols=179 Identities=11% Similarity=0.052 Sum_probs=93.9
Q ss_pred ccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 136 EVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
++.|-++.+++|.+.+.. .. -.-..++-|.++|++|+|||+||+.+++. ...+| +.|+.++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~------ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE------ 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH------
Confidence 566777777777665421 11 01245678999999999999999999984 33332 3333221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCc------cc-----ccchhhhcccC--CCCcEEE
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDY------NK-----WEPFFFCVKNG--LHGSKIL 274 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~------~~-----~~~l~~~l~~~--~~gs~Ii 274 (515)
+. .... ......+...+.......+++|+||+++.--. .. ...+...+... ..+-.||
T Consensus 274 ----l~----sk~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 274 ----IM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp ----HH----SSCT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred ----hh----cccc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 11 1111 11222333334444466789999999954210 01 11222222211 1233345
Q ss_pred EEcccHH-HHhhhC----CcceeeccCCChhhhHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCCChh
Q 040597 275 VTTRNES-VARMMG----STNIIFIEQLTEEECWSLFKRLAFFDRSFEDYEKLEPIGRKIAHKCKGLPLA 339 (515)
Q Consensus 275 vTTR~~~-v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~c~glPLa 339 (515)
.||.... +-..+. -...+++...+.++-.++|..+..... .....+ ...|++++.|.--|
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCCHH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCCHH
Confidence 5554432 211111 145688888888888888876552211 111112 45678888876543
No 74
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.37 E-value=0.00014 Score=68.97 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=33.9
Q ss_pred CccccccchHHHHHHHHhccCC-------CCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-------EQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|.+..++++.+.+..-.. .....+-+.|+|++|+|||+||+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 4688988877777765531000 011223478999999999999999987
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.34 E-value=0.00044 Score=75.85 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=64.1
Q ss_pred CccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAK 210 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 210 (515)
..++|.+..++.+...+.... ........+.++|++|+|||++|+.+.+. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 357888888887777665321 11234457999999999999999999873 32 2233444443211000
Q ss_pred HHHHHhcCCCCCcccH---HHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcc
Q 040597 211 AIIEGLGESASSLSEF---QSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVK 265 (515)
Q Consensus 211 ~il~~l~~~~~~~~~~---~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 265 (515)
...+.+..+..... ..+...++ .....+|+||++........+.|...+.
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 00111111111111 11222222 2446799999997766555555655554
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.27 E-value=0.0007 Score=75.15 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=70.8
Q ss_pred ccccccchHHHHHHHHhccC----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHH
Q 040597 136 EVFSGVDEKNELLNKLLCES----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKA 211 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 211 (515)
.++|.+..+..+...+.... ....+...+.|+|++|+|||++|+.+.+. ....-...+.++++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 57899888888877775421 11233468999999999999999999873 21111123344444321110 0
Q ss_pred HHHHhcCCCCC---cccHHHHHHHHHHHhcCCcEEEEecccCCCCcccccchhhhcccCC-----------CCcEEEEEc
Q 040597 212 IIEGLGESASS---LSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGL-----------HGSKILVTT 277 (515)
Q Consensus 212 il~~l~~~~~~---~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTT 277 (515)
...+.+..+. ......+...+.. ...-+|+||++..........|...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0111100000 0001122222222 334699999997766555666666665331 234477777
Q ss_pred cc
Q 040597 278 RN 279 (515)
Q Consensus 278 R~ 279 (515)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.25 E-value=0.0022 Score=61.53 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568889999999999999999983
No 78
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.23 E-value=0.00027 Score=68.47 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=26.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhh-cccceeeEEEe
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVK-RNFEKVIWVCV 199 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~~ 199 (515)
...+.|+|++|+|||+||..+++. .. ..-..+.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 467889999999999999999984 33 22223445544
No 79
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.20 E-value=0.00023 Score=68.43 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEe--CCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCV--SDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
.+++.|+|++|+|||+||.++... .-..+.|+++ .+..+. - ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 457789999999999999998863 1223567777 332110 0 0345556666666665
Q ss_pred CCcEEEEecccC
Q 040597 239 GKKFFLLLDDVW 250 (515)
Q Consensus 239 ~kr~LlVLDdvw 250 (515)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.002 Score=58.59 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcC-----------CC-CCcccHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGE-----------SA-SSLSEFQ 227 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~-~~~~~~~ 227 (515)
.-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +....+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999998886 1224678888776555544432 3332221 11 1122223
Q ss_pred HHHHHHHHHhcCCcEEEEecccCC
Q 040597 228 SLMSHIHRSIEGKKFFLLLDDVWD 251 (515)
Q Consensus 228 ~l~~~l~~~L~~kr~LlVLDdvw~ 251 (515)
.....++..+..+.-+||+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344555555544577999998743
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.08 E-value=0.0018 Score=67.82 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=76.6
Q ss_pred CccccccchHHHHHHHHhccC-CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCES-SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.+++|-++-...+.+.+.-.. .......++.|+|++|+||||||+.++.. ....| .-++++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 356777766666544432110 00124568999999999999999999873 33222 1223332112111111100
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc----cccchhhhcccCC---------------CCcEEE
Q 040597 214 EGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN----KWEPFFFCVKNGL---------------HGSKIL 274 (515)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~Ii 274 (515)
..++. ....+...+... ....-+++||+++..... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 001111222222 223348889999764332 1233333332111 234566
Q ss_pred EEcccHH-----HHhhhCCcceeeccCCChhhhHHHHHHhh
Q 040597 275 VTTRNES-----VARMMGSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 275 vTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
.||.... +... ...+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 6665432 2222 2478999999999888887654
No 82
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.08 E-value=0.00069 Score=66.26 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=82.1
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
..++|+++.++.+...+... .-+.|+|++|+|||+||+.+.+ .....| ..+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~-- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTM-- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEE--
T ss_pred cceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCce--
Confidence 35889988888888877643 2588999999999999999987 232222 223443333322221100
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcC--CcEEEEecccCCCCcccccchhhhccc-----------CCCCcEEEEEcccHH
Q 040597 215 GLGESASSLSEFQSLMSHIHRSIEG--KKFFLLLDDVWDGDYNKWEPFFFCVKN-----------GLHGSKILVTTRNES 281 (515)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVLDdvw~~~~~~~~~l~~~l~~-----------~~~gs~IivTTR~~~ 281 (515)
.......... .-.+ ...++++|+++..+......+...+.. ......||.|+....
T Consensus 93 -~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 93 -IYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp -EEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred -eecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 0000000000 0001 125899999976654444444444322 122444555554221
Q ss_pred ------H-HhhhCC-cceeeccCCChhhhHHHHHHhhc
Q 040597 282 ------V-ARMMGS-TNIIFIEQLTEEECWSLFKRLAF 311 (515)
Q Consensus 282 ------v-~~~~~~-~~~~~l~~L~~~~a~~Lf~~~~~ 311 (515)
+ ...... ...+.+.+.+.++-.+++.+...
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 111122 22578888888888888887764
No 83
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.87 E-value=0.001 Score=60.96 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS--LSEFQSLMSHIHRSI 237 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~~L 237 (515)
.-.++.|+|..|+||||++..+... ...+-..++.+....... ....+++.++..... .....++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3468999999999999999877763 333322344443332211 112344444432221 123344555565555
Q ss_pred cCCcE-EEEecccCCCCcccccchhhhcccCCCCcEEEEEccc
Q 040597 238 EGKKF-FLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRN 279 (515)
Q Consensus 238 ~~kr~-LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~ 279 (515)
.+.++ +||+|.+...+.+..+.+.. +.+ .|..||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 44444 99999995443333333332 222 26779998884
No 84
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.82 E-value=0.004 Score=61.17 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
+.-.++.|.|++|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.+++...+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 34579999999999999999988863 32222346788877766654 3444443311 123455555656
Q ss_pred HHHhc-CCcEEEEecccC
Q 040597 234 HRSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L~-~kr~LlVLDdvw 250 (515)
...+. .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55543 455689999873
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.0037 Score=57.28 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=60.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-------------------
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS------------------- 221 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------------- 221 (515)
-.+++|+|++|+|||||++.+... ....-..+.|++... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 368999999999999999988853 222223466666544 2333333322 3321100
Q ss_pred ----CcccHHHHHHHHHHHhc-CC--cEEEEecccCCC---Ccccccchhhhccc--CCCCcEEEEEcccH
Q 040597 222 ----SLSEFQSLMSHIHRSIE-GK--KFFLLLDDVWDG---DYNKWEPFFFCVKN--GLHGSKILVTTRNE 280 (515)
Q Consensus 222 ----~~~~~~~l~~~l~~~L~-~k--r~LlVLDdvw~~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 280 (515)
...+..++...+...+. .+ ..+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134555555554442 23 349999998521 22222333333321 12467788888765
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.77 E-value=0.016 Score=56.74 Aligned_cols=157 Identities=10% Similarity=-0.040 Sum_probs=99.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IE 238 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~ 238 (515)
-.++..++|+.|.||++.+..+.+.. ....|+....+.+... .+..++.+.+... +-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCc
Confidence 35689999999999999998887732 1234432222222222 2333444333322 34
Q ss_pred CCcEEEEecccCC-CCcccccchhhhcccCCCCcEEEEEccc-------HHHHhhh-CCcceeeccCCChhhhHHHHHHh
Q 040597 239 GKKFFLLLDDVWD-GDYNKWEPFFFCVKNGLHGSKILVTTRN-------ESVARMM-GSTNIIFIEQLTEEECWSLFKRL 309 (515)
Q Consensus 239 ~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 309 (515)
+++-++|+|+++. .+...++.+...+....+++.+|+++-. ..+...+ .....+...+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999976 5556677788888765567777766532 2344433 33568899999999988888777
Q ss_pred hcCCCCCCCccchHHHHHHHHHHcCCCChhhHh
Q 040597 310 AFFDRSFEDYEKLEPIGRKIAHKCKGLPLAAKV 342 (515)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 342 (515)
+...+- .-..+.+..|++.++|.+.++..
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 643221 12245677889999998877654
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.0046 Score=67.92 Aligned_cols=156 Identities=10% Similarity=0.034 Sum_probs=82.8
Q ss_pred CccccccchHHHHHHHHhc---cC-----CCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 135 GEVFSGVDEKNELLNKLLC---ES-----SEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
.+++|.+..++++.+++.. .. -.-.....|.|+|++|+||||||+.+... ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 4688999988888887743 00 00134467999999999999999999873 33222 2333211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCcEEEEecccCCCCcc-----------cccchhhhcccC--CCCcEE
Q 040597 207 RVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKKFFLLLDDVWDGDYN-----------KWEPFFFCVKNG--LHGSKI 273 (515)
Q Consensus 207 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDdvw~~~~~-----------~~~~l~~~l~~~--~~gs~I 273 (515)
+..... ......+...+.......+.++++|++...... ....+...+... ..+..+
T Consensus 274 ---------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 111111 111122223333333456789999999432110 111222222211 223445
Q ss_pred EEEcccHH-HHhhhC----CcceeeccCCChhhhHHHHHHhh
Q 040597 274 LVTTRNES-VARMMG----STNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 274 ivTTR~~~-v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 55655432 211111 12456777888888888887654
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.67 E-value=0.014 Score=55.28 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=64.2
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCcE
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRS-IEGKKF 242 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~ 242 (515)
+.|+|++|+||||||+.++.. ... ..+.+....-.+. ...........+.+. -...++
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999873 221 2344443221100 000111112222222 134678
Q ss_pred EEEecccCCCCc-------ccc----cchhhhcccCC--CCcEEEEEcccHHHHhh--h---CCcceeeccCCChhhhHH
Q 040597 243 FLLLDDVWDGDY-------NKW----EPFFFCVKNGL--HGSKILVTTRNESVARM--M---GSTNIIFIEQLTEEECWS 304 (515)
Q Consensus 243 LlVLDdvw~~~~-------~~~----~~l~~~l~~~~--~gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~ 304 (515)
++++|++..... ... ..+...+..+. ...-++.+|..+.+... . .-...+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 011 11222222221 23334556655543322 1 124567788888888778
Q ss_pred HHHHhh
Q 040597 305 LFKRLA 310 (515)
Q Consensus 305 Lf~~~~ 310 (515)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877654
No 89
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.0049 Score=56.96 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCCC------------CCc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGESA------------SSL 223 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------~~~ 223 (515)
.-.++.|+|++|+|||||+..+........ .-..++|++....+....+. .++..++... ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999998876311111 13568899877755544332 3334443221 011
Q ss_pred ccHHHHHHHHHHHhc-CCcEEEEecccC
Q 040597 224 SEFQSLMSHIHRSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 224 ~~~~~l~~~l~~~L~-~kr~LlVLDdvw 250 (515)
.....+...+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 112222333444443 467799999984
No 90
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.64 E-value=0.0075 Score=57.78 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=53.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcc--cceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHH-HHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSL-MSHIH 234 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l-~~~l~ 234 (515)
++.|.|++|+||||||.+++.. .... =..++||+....++.. .++.++...+ ...+.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999887763 3332 2467899988877754 2566665432 12345554 33333
Q ss_pred HH--h-cCCcEEEEecccC
Q 040597 235 RS--I-EGKKFFLLLDDVW 250 (515)
Q Consensus 235 ~~--L-~~kr~LlVLDdvw 250 (515)
.. + .++.-|||+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 3 4567899999983
No 91
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.63 E-value=0.0075 Score=60.00 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+.|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 92
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.60 E-value=0.013 Score=57.50 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=55.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCCC------------CC
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGESA------------SS 222 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------~~ 222 (515)
+.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+.. ++..++... ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4557999999999999999988876311111 224688999888777665543 334443221 11
Q ss_pred cccHHHHHHHHHHHhc---CCcEEEEeccc
Q 040597 223 LSEFQSLMSHIHRSIE---GKKFFLLLDDV 249 (515)
Q Consensus 223 ~~~~~~l~~~l~~~L~---~kr~LlVLDdv 249 (515)
......+...+...+. .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1222233344444443 45668999987
No 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.60 E-value=0.013 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 94
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.59 E-value=0.0024 Score=56.80 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=61.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC---cccHHHHHHHHHHHh---cCC--CCC------cccHH
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD---TFEEIRVAKAIIEGL---GES--ASS------LSEFQ 227 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~il~~l---~~~--~~~------~~~~~ 227 (515)
..|.|++..|.||||+|--..- +...+=-.+.++.... ......++..+.-.+ +.. ... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566667777999999966554 2323322344554332 233344444331000 000 000 01123
Q ss_pred HHHHHHHHHhcCCcE-EEEecccCC---CCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 228 SLMSHIHRSIEGKKF-FLLLDDVWD---GDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 228 ~l~~~l~~~L~~kr~-LlVLDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
......++.+.+.+| |||||++-. ...-..+.+...+........||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 334445556655554 999999821 12233455666666666677899999985
No 95
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.53 E-value=0.0095 Score=55.60 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~ 184 (515)
+.|+|++|+||||||+.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999873
No 96
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.52 E-value=0.012 Score=60.60 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=77.7
Q ss_pred CccccccchHHHHHHH---HhccCC----CCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 135 GEVFSGVDEKNELLNK---LLCESS----EQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~---L~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
.+++|.++.+.++.+. +..... .-.-.+-+.|+|++|+|||+||+.++.. ... ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH---
Confidence 4688887766555544 322100 0011234899999999999999999873 221 223343322100
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhc----CCcEEEEecccCCCCc----------cc----ccchhhhcccC--
Q 040597 208 VAKAIIEGLGESASSLSEFQSLMSHIHRSIE----GKKFFLLLDDVWDGDY----------NK----WEPFFFCVKNG-- 267 (515)
Q Consensus 208 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~----~kr~LlVLDdvw~~~~----------~~----~~~l~~~l~~~-- 267 (515)
... ......+...++ ..+.++++|+++.... .. ...+...+...
T Consensus 103 -----------~~~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------MFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------SCT-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------hhh-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 000 011122223332 2358999999953211 11 12222223322
Q ss_pred CCCcEEEEEcccHHHHhh--h---CCcceeeccCCChhhhHHHHHHhh
Q 040597 268 LHGSKILVTTRNESVARM--M---GSTNIIFIEQLTEEECWSLFKRLA 310 (515)
Q Consensus 268 ~~gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~~ 310 (515)
..+..|+.||..+..... . .-...+.+...+.++-.+++..++
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 123445556665544321 1 113577888888888888887654
No 97
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.50 E-value=0.0066 Score=59.02 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhc---------cc-----ceeeEEEeCCcccHHHHHHHHHHHhcCCC----
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKR---------NF-----EKVIWVCVSDTFEEIRVAKAIIEGLGESA---- 220 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~---- 220 (515)
+.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++...+.. ++..++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 3457999999999999999988875311111 11 4688999888777666553 344444321
Q ss_pred -----CCcccHH---HHHHHHHHHhc--CCcEEEEeccc
Q 040597 221 -----SSLSEFQ---SLMSHIHRSIE--GKKFFLLLDDV 249 (515)
Q Consensus 221 -----~~~~~~~---~l~~~l~~~L~--~kr~LlVLDdv 249 (515)
....+.+ ++...+...+. .+.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 33444555554 34568999987
No 98
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.50 E-value=0.0078 Score=58.57 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcc----cceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------CcccH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRN----FEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSEF 226 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 226 (515)
.-.++.|+|.+|+||||||.+++........ -..++|++....++...+.. ++..++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999888753111110 24688999888776665543 3444433210 11122
Q ss_pred H---HHHHHHHHHhc--CCcEEEEeccc
Q 040597 227 Q---SLMSHIHRSIE--GKKFFLLLDDV 249 (515)
Q Consensus 227 ~---~l~~~l~~~L~--~kr~LlVLDdv 249 (515)
+ ++...+...+. .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 34445555553 45679999987
No 99
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.41 E-value=0.011 Score=58.20 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. ..+.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999888763 32222457899988766643 2344443211 1234555555555
Q ss_pred HHhc-CCcEEEEecccC
Q 040597 235 RSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 235 ~~L~-~kr~LlVLDdvw 250 (515)
.... .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 346699999984
No 100
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.33 E-value=0.013 Score=57.96 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-.++.|.|.+|+||||||.++... ....-..++|++....++.. ....++.... ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3458889999999999999888763 32223468899988766653 2344443211 1234566666666
Q ss_pred HHhc-CCcEEEEecccC
Q 040597 235 RSIE-GKKFFLLLDDVW 250 (515)
Q Consensus 235 ~~L~-~kr~LlVLDdvw 250 (515)
...+ ...-+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999983
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.30 E-value=0.0041 Score=55.94 Aligned_cols=42 Identities=31% Similarity=0.301 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 140 GVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
|.+.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~--~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK--TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC--CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456677777776532 34568999999999999999998876
No 102
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.26 E-value=0.011 Score=58.15 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-.++.|.|.+|+||||||.++... ....-..++|++....++... ...++.... ...+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4468999999999999999888763 322223688999887766432 344443211 1123455555554
Q ss_pred HHh-cCCcEEEEecccC
Q 040597 235 RSI-EGKKFFLLLDDVW 250 (515)
Q Consensus 235 ~~L-~~kr~LlVLDdvw 250 (515)
... ..+.-+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 443 2455699999983
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.18 E-value=0.016 Score=55.36 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccc-eeeEEEeC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE-KVIWVCVS 200 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~ 200 (515)
.-.+++|+|.+|+|||||++.++.. ....-. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 3468999999999999999988763 222222 45666644
No 104
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.96 E-value=0.019 Score=55.53 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=32.8
Q ss_pred cccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 137 VFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++|....+..+...+..... ...+.+|+|.|+.|+||||+++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~-~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE-PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC-CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555555556655554422 35678999999999999999988865
No 105
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.02 Score=54.85 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIE 238 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~ 238 (515)
...+++|+|.+|+||||++..+......... ..+..+.... .....+.+.......+.+.....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3569999999999999999888763221111 2344554432 1122223333333333221111223334444443 3
Q ss_pred CCcEEEEeccc
Q 040597 239 GKKFFLLLDDV 249 (515)
Q Consensus 239 ~kr~LlVLDdv 249 (515)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888843
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.92 E-value=0.0073 Score=57.68 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+++++..++..........+|.|+|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444544443322234568999999999999999998875
No 107
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.90 E-value=0.024 Score=54.80 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.-.++.|.|.+|+||||+|..++.+... .. ..++|++... +...+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND-DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-CeEEEEECCC--CHHHHHHHHHHH
Confidence 4468999999999999999888764222 22 5678887664 455555555543
No 108
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.85 E-value=0.077 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.85 E-value=0.063 Score=51.12 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccceeeEEEeCCcccHHHHHHHHHHHh------cC-CCCCcccHHHH
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEKVIWVCVSDTFEEIRVAKAIIEGL------GE-SASSLSEFQSL 229 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il~~l------~~-~~~~~~~~~~l 229 (515)
.....+|+|+|..|+||||||+.+........ ....+..|+...-+-.......+.... .. ..+...+...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 35678999999999999999988876322111 122334445444333333444443221 11 12344556666
Q ss_pred HHHHHHHhcC
Q 040597 230 MSHIHRSIEG 239 (515)
Q Consensus 230 ~~~l~~~L~~ 239 (515)
.+.+.....+
T Consensus 108 ~~~l~~l~~g 117 (290)
T 1odf_A 108 QEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhcc
Confidence 6666555444
No 110
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.79 E-value=0.043 Score=52.68 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH--HHHHHHHHHhcCC---CCCcccHHHH-HHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI--RVAKAIIEGLGES---ASSLSEFQSL-MSH 232 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~il~~l~~~---~~~~~~~~~l-~~~ 232 (515)
....+++|+|++|+||||++..++.. ....-..+.++... .+... +-+...+...+.. .....+...+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35689999999999999999988863 33222234455443 23221 2223344443322 1111122222 234
Q ss_pred HHHHhcCCcEEEEeccc
Q 040597 233 IHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 233 l~~~L~~kr~LlVLDdv 249 (515)
+...+....=++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444455558888966
No 111
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.76 E-value=0.0045 Score=53.84 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 040597 162 HVISLVGLGGIGKTTLAQLA 181 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v 181 (515)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.76 E-value=0.036 Score=50.48 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhh---c-ccceeeEEEeCCccc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVK---R-NFEKVIWVCVSDTFE 204 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~~~~~~~ 204 (515)
.-.+++|+|+.|+|||||++.++...... . .-..++|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 45799999999999999999887521111 1 134577887655433
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.0078 Score=54.39 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~---~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR---QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT---CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444554432 24567999999999999999998876
No 114
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.71 E-value=0.034 Score=54.14 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 216 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 216 (515)
.-.++.|.|.+|+||||+|..++.+. ...=..++|++... +...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~--a~~g~~Vl~fSlEm--s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA--LNDDRGVAVFSLEM--SAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH--HHTTCEEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCC--CHHHHHHHHHHHh
Confidence 34689999999999999998887642 22223567777643 5566666665543
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.68 E-value=0.0051 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998876
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.66 E-value=0.0073 Score=53.53 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|+.|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.65 E-value=0.0027 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=18.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966655
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.64 E-value=0.0063 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999998876
No 119
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.63 E-value=0.046 Score=54.61 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhc----ccceeeEEEeCCcccHHHHHHHHHHHhcCCCC---------CcccH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKR----NFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS---------SLSEF 226 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 226 (515)
.-.++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+.+.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 446899999999999999997653111111 2345888887776655443 234554443210 01111
Q ss_pred ---HHHHHHHHHHh-cCCcEEEEecccC
Q 040597 227 ---QSLMSHIHRSI-EGKKFFLLLDDVW 250 (515)
Q Consensus 227 ---~~l~~~l~~~L-~~kr~LlVLDdvw 250 (515)
......+...+ ..+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22223333333 3467789999873
No 120
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.62 E-value=0.0056 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 121
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.61 E-value=0.009 Score=55.87 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++++..+...........+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554433235568999999999999999998876
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.60 E-value=0.047 Score=53.55 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhccc---c-eeeEEEeCCcccHHHHHHHHHHHhcCCC------------CC
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNF---E-KVIWVCVSDTFEEIRVAKAIIEGLGESA------------SS 222 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~~~~~~~~~~~~~~il~~l~~~~------------~~ 222 (515)
+.-.++.|+|+.|+|||||+..++......... . .++|++....+....+ ..+.+..+... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 455799999999999999999887631111111 2 3488887665433332 23333332210 01
Q ss_pred cccHHHHHHHHHHHhc------CCcEEEEecccC
Q 040597 223 LSEFQSLMSHIHRSIE------GKKFFLLLDDVW 250 (515)
Q Consensus 223 ~~~~~~l~~~l~~~L~------~kr~LlVLDdvw 250 (515)
.....++...+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1122334444455543 467799999873
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.47 E-value=0.0069 Score=54.29 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
No 124
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.44 E-value=0.037 Score=56.04 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=53.8
Q ss_pred HHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc-HHHHHHHHHHHhc--------
Q 040597 147 LLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVAKAIIEGLG-------- 217 (515)
Q Consensus 147 l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~-------- 217 (515)
.++.|..-. .-..++|+|.+|+|||||++.+..+.... .-..++++.+.+..+ ..+++.++...-.
T Consensus 141 ~ID~L~pi~----kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~ 215 (473)
T 1sky_E 141 VVDLLAPYI----KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVF 215 (473)
T ss_dssp HHHHHSCEE----TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEE
T ss_pred HHHHHhhhc----cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEE
Confidence 455564321 12358899999999999999888742222 224456666766543 3445544543200
Q ss_pred CCCCCcccHHH----HHHHHHHHh---cCCcEEEEeccc
Q 040597 218 ESASSLSEFQS----LMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 218 ~~~~~~~~~~~----l~~~l~~~L---~~kr~LlVLDdv 249 (515)
....+...... ..-.+.+++ +++..||++||+
T Consensus 216 ~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 216 GQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11111111111 111233333 588999999999
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.42 E-value=0.0094 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 126
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.35 E-value=0.014 Score=57.35 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=34.0
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc---ccceeeEEEeCCccc
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR---NFEKVIWVCVSDTFE 204 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~~~~~~~ 204 (515)
+.++.+..- ..-..++|+|.+|+|||||++.+.+. +.. .+. ++++-+.+...
T Consensus 163 raID~~~pi----~rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 163 RVLDLASPI----GRGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHSCC----BTTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSE-EEEEEESSCHH
T ss_pred eeeeeeeee----cCCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCee-EEEEEecCChH
Confidence 455666543 23458899999999999999988763 322 233 33566666443
No 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.33 E-value=0.0097 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.31 E-value=0.01 Score=53.26 Aligned_cols=24 Identities=42% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.30 E-value=0.0082 Score=52.87 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.28 E-value=0.0084 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998876
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.24 E-value=0.0078 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 132
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.20 E-value=0.093 Score=52.69 Aligned_cols=24 Identities=42% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++.|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 133
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.15 E-value=0.014 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.11 E-value=0.09 Score=52.92 Aligned_cols=24 Identities=42% Similarity=0.369 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.08 E-value=0.0089 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 136
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.06 E-value=0.012 Score=54.83 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 137
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.04 E-value=0.016 Score=57.31 Aligned_cols=48 Identities=27% Similarity=0.249 Sum_probs=34.2
Q ss_pred ccccccchHHHHHHHHhcc----------CCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCE----------SSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~----------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|.+..++.+...+... .........+.|+|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3678877777777766200 00012346789999999999999999987
No 138
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.04 E-value=0.014 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998876
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.02 E-value=0.012 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 140
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.02 E-value=0.012 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999886
No 141
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.02 E-value=0.038 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888763
No 142
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.02 E-value=0.012 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.01 E-value=0.013 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.00 E-value=0.015 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998875
No 145
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 146
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.97 E-value=0.016 Score=59.76 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.++|.++.++.+...+..+ .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHH
Confidence 4788888888888777643 36889999999999999999873
No 147
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.96 E-value=0.016 Score=52.10 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998876
No 148
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.95 E-value=0.17 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988876
No 149
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.92 E-value=0.013 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.91 E-value=0.016 Score=52.26 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.91 E-value=0.013 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.91 E-value=0.015 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.90 E-value=0.015 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999998874
No 154
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.90 E-value=0.011 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999998876
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.90 E-value=0.014 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999998876
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.89 E-value=0.011 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 157
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.87 E-value=0.01 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998875
No 158
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.84 E-value=0.013 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.84 E-value=0.02 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998876
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.84 E-value=0.014 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.84 E-value=0.014 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.83 E-value=0.015 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.80 E-value=0.017 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998876
No 164
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.78 E-value=0.025 Score=55.09 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred chHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 142 DEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 142 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++++.+...-. ......|.|+|++|+||||+++.++.
T Consensus 6 ~L~~~il~~l~~~i~-~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIE-DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTT-TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344555555532221 23456789999999999999998887
No 165
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.76 E-value=0.11 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999987765
No 166
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.75 E-value=0.017 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998876
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.017 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.73 E-value=0.016 Score=51.88 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998875
No 169
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.73 E-value=0.012 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 170
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.72 E-value=0.018 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.72 E-value=0.016 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 172
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.021 Score=50.41 Aligned_cols=25 Identities=40% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998873
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.71 E-value=0.024 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998875
No 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.70 E-value=0.15 Score=49.42 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998876
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.69 E-value=0.018 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 176
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.69 E-value=0.012 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998876
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.67 E-value=0.054 Score=47.95 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.66 E-value=0.016 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998875
No 179
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.65 E-value=0.14 Score=48.94 Aligned_cols=87 Identities=21% Similarity=0.126 Sum_probs=45.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCc-ccHHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDT-FEEIRVAKAIIEGLGES---ASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~---~~~~~~~~~l~~~l~~~ 236 (515)
..+++++|.+|+||||++..+... ....-..+.+++.... ......+.......+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999888763 3222223555554322 12223333344443332 11112333333333333
Q ss_pred hc-CCcEEEEeccc
Q 040597 237 IE-GKKFFLLLDDV 249 (515)
Q Consensus 237 L~-~kr~LlVLDdv 249 (515)
++ +.-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33 33337788865
No 180
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.64 E-value=0.055 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 181
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.64 E-value=0.015 Score=57.01 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=31.3
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|.+.....+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-----~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-----GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-----GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC-----CCceEEEECCCCccHHHHHHHHHH
Confidence 45888877555544444322 122388999999999999999987
No 182
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.63 E-value=0.016 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 183
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.61 E-value=0.32 Score=49.93 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999988875
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.55 E-value=0.017 Score=56.84 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR-VAKAIIEGLGESASSLSEFQSLMSHIHRSIEG 239 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~ 239 (515)
..+++|+|+.|+|||||.+.+... +.......+ +.+.++..... -...++.+... ... .......+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~-~~~---~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREV-HRD---TLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEB-TTT---BSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeee-ccc---cCCHHHHHHHHhhh
Confidence 359999999999999999988762 222212222 22222111000 00000000000 001 12234577788888
Q ss_pred CcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHHH
Q 040597 240 KKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESVA 283 (515)
Q Consensus 240 kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 283 (515)
.+=+|++|.+- +.+.+..+.... ..|..||+||.....+
T Consensus 196 ~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 88899999995 334444433332 2366688888876544
No 185
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.54 E-value=0.098 Score=46.67 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=30.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 163 VISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.|+|=|.-|+||||.++.+.+ ..+..-..+.+..-+.........+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 478889999999999999987 3444333344444333334444444444
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.53 E-value=0.014 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 187
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.094 Score=48.24 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=32.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAI 212 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 212 (515)
.-.++.|.|.+|+|||++|.+++.+ .....-..+++++... +...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHH
Confidence 3468899999999999999876643 1223334566776654 344444433
No 188
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.50 E-value=0.019 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999884
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.49 E-value=0.069 Score=63.32 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHI 233 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 233 (515)
+..+.|.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+-. .....++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 34679999999999999999888763 333334577888887766554 344442211 112334555555
Q ss_pred HHHh-cCCcEEEEecccC
Q 040597 234 HRSI-EGKKFFLLLDDVW 250 (515)
Q Consensus 234 ~~~L-~~kr~LlVLDdvw 250 (515)
.... ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3567899999983
No 190
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.46 E-value=0.016 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.45 E-value=0.02 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 192
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.45 E-value=0.19 Score=51.00 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHh
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGL 216 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 216 (515)
.-.++.|.|.+|+||||+|..++.+... ..=..++|++... +...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 4468999999999999999888764221 1223577877764 4556666665443
No 193
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.43 E-value=0.094 Score=53.45 Aligned_cols=43 Identities=33% Similarity=0.463 Sum_probs=29.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 204 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 204 (515)
....+++|+|..|+|||||++.+..- .+. ..+.+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 34679999999999999999988862 322 23455555444443
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.43 E-value=0.031 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999888763
No 195
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.41 E-value=0.013 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.298 Sum_probs=16.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.41 E-value=0.02 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 197
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.41 E-value=0.021 Score=50.55 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 198
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.41 E-value=0.2 Score=47.81 Aligned_cols=24 Identities=42% Similarity=0.353 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998886
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.40 E-value=0.021 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 200
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.40 E-value=0.15 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988876
No 201
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.39 E-value=0.021 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 202
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.37 E-value=0.023 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
.+.+||+|.|-||+||||.|-.+.. .....=..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4678999999999999999976654 2222222355566553
No 203
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.35 E-value=0.037 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998887
No 204
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.35 E-value=0.021 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.31 E-value=0.13 Score=52.46 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=34.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAII 213 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 213 (515)
.-.++.|.|.+|+||||||..++.+.... .-..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999999888742221 223577887654 3345555543
No 206
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.23 E-value=0.027 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999998876
No 207
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.19 E-value=0.027 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998875
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.19 E-value=0.028 Score=49.16 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.18 E-value=0.022 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998876
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.18 E-value=0.063 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=18.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHh
Q 040597 161 LHVISLVGLGGIGKTTLAQLAY 182 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~ 182 (515)
..++.|+|.+|.|||++|....
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHH
Confidence 3477899999999999996643
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.18 E-value=0.025 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 212
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.17 E-value=0.031 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHh
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAY 182 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~ 182 (515)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999887
No 213
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.17 E-value=0.029 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.16 E-value=0.015 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 215
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.14 E-value=0.18 Score=52.13 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=35.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcc-cceeeEEEeCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRN-FEKVIWVCVSDTFEEIRVAKAIIEG 215 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~il~~ 215 (515)
.-.++.|.|.+|+||||+|.+++.+ .... =..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 4468899999999999999888763 3222 23577887755 455666665543
No 216
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.10 E-value=0.2 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...|+|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998873
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.09 E-value=0.026 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..|+|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.04 E-value=0.17 Score=46.32 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=53.2
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhh-hccc-ceeeEEEeCCcccHHHHHHHHHHHhcCCCC
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEV-KRNF-EKVIWVCVSDTFEEIRVAKAIIEGLGESAS 221 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 221 (515)
.++++..+..+ +.+.|+|..|+||||+.....-+... .... ...+.+..........+...+...++....
T Consensus 66 q~~~i~~i~~g-------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 66 ESEILEAISQN-------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHhcC-------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 34455555432 47899999999999877554432111 1222 223333344433444555555544432210
Q ss_pred ---------------C-----cccHHHHHHHHHHHhcCCcEEEEecccCC
Q 040597 222 ---------------S-----LSEFQSLMSHIHRSIEGKKFFLLLDDVWD 251 (515)
Q Consensus 222 ---------------~-----~~~~~~l~~~l~~~L~~kr~LlVLDdvw~ 251 (515)
. ..+.+.+.+.+...+.+- -+||+|.++.
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0 123456666666544433 4789999965
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.04 E-value=0.032 Score=50.36 Aligned_cols=24 Identities=38% Similarity=0.284 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998876
No 220
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.034 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999888763
No 221
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.02 E-value=0.027 Score=50.89 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.01 E-value=0.029 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|++|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998876
No 223
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.00 E-value=0.033 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 224
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.99 E-value=0.028 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999885
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.96 E-value=0.062 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998876
No 226
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.94 E-value=0.16 Score=51.57 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=33.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
.-.++.|.|.+|+||||+|.+++.+.... =..++|++... +..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 44689999999999999998887642222 23567776554 33344444443
No 227
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.92 E-value=0.024 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 228
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.90 E-value=0.03 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 229
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.85 E-value=0.22 Score=50.28 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=44.0
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc-HHHHHHHHHHH
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVAKAIIEG 215 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~ 215 (515)
+.++.|..- ..-.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+... ..++++++...
T Consensus 142 r~ID~l~pi----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 466777643 233578999999999999999888731 123345677787877554 45666666654
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.83 E-value=0.041 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998876
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.75 E-value=0.033 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998876
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.75 E-value=0.062 Score=52.84 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~---~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD---SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG---CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh---cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555433 34678999999999999999988865
No 233
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.74 E-value=0.19 Score=51.03 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc-HHHHHHHHHHH
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE-EIRVAKAIIEG 215 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~ 215 (515)
+.++.|..- ..-.-++|.|..|+|||+|+..+.++. .+.+-+.++++-+.+... ..++++++...
T Consensus 154 rvID~l~pi----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPY----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCC----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeeccc----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 356666543 233468999999999999998888731 233456778888877554 45666666553
No 234
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.71 E-value=0.03 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998876
No 235
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.59 E-value=0.068 Score=49.13 Aligned_cols=39 Identities=31% Similarity=0.285 Sum_probs=28.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
-.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 458999999999999999877653 222224577877655
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.58 E-value=0.036 Score=51.15 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=26.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeC
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 200 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 200 (515)
.-.+++|+|+.|+|||||++.+...... ..-....++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 3468999999999999999988742111 122345555543
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.45 E-value=0.04 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998876
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.44 E-value=0.025 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 239
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.44 E-value=0.042 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 240
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.43 E-value=0.046 Score=52.40 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.39 E-value=0.031 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 242
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.38 E-value=0.39 Score=43.31 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=31.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHH
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIE 214 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 214 (515)
..|+|.|..|+||||+++.+.+... ...+..+.+..-......-..+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999987422 233433333333333333444455544
No 243
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.33 E-value=0.042 Score=50.07 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 244
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.32 E-value=0.044 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+|.|.|++|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.31 E-value=0.051 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|+|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998886
No 246
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.30 E-value=0.098 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.29 E-value=0.045 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 248
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.25 E-value=0.17 Score=60.07 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-.++.|.|++|+||||||.+++.. ....=..++|++....++... ++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4569999999999999999888763 333334678998887766532 445554321 2345566666665
Q ss_pred HHh-cCCcEEEEecccCC
Q 040597 235 RSI-EGKKFFLLLDDVWD 251 (515)
Q Consensus 235 ~~L-~~kr~LlVLDdvw~ 251 (515)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34566999998843
No 249
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.25 E-value=0.038 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988764
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.23 E-value=0.04 Score=52.08 Aligned_cols=50 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred CccccccchHHHHHHHHhccCC-------CCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 135 GEVFSGVDEKNELLNKLLCESS-------EQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+++|.+....++.+....-.. .-.-.+-+.|+|++|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 4677877655555443321000 0011122899999999999999999873
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.22 E-value=0.03 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=16.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHh-c
Q 040597 161 LHVISLVGLGGIGKTTLAQLAY-N 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~-~ 183 (515)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999888 5
No 252
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.21 E-value=0.046 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|.|.|++|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.17 E-value=0.046 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999998886
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.17 E-value=0.048 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.15 E-value=0.046 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999998875
No 256
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.14 E-value=0.06 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999988875
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.14 E-value=0.048 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 258
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.13 E-value=0.049 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.12 E-value=0.048 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.. .+++|+|+.|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999998865
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.10 E-value=0.15 Score=59.58 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-.++.|.|.+|+||||||.+++.. ....=..++|++....++... ++.++.... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4568999999999999999888764 333334688998888776532 444543311 1234556666665
Q ss_pred HHh-cCCcEEEEecccCC
Q 040597 235 RSI-EGKKFFLLLDDVWD 251 (515)
Q Consensus 235 ~~L-~~kr~LlVLDdvw~ 251 (515)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34566999999843
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.02 E-value=0.063 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998864
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.02 E-value=0.056 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998876
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.01 E-value=0.062 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|.|+|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999998876
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.01 E-value=0.053 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|.|+|+.|+||||||..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.00 E-value=0.093 Score=49.11 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC-cccHHHHHHHHHH--HhcCCCCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD-TFEEIRVAKAIIE--GLGESASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~--~l~~~~~~~~~~~~l~~~l~~~ 236 (515)
.-.+++|+|+.|+|||||.+.+..- +...+.+.+++.-.. .+-.... ..++. .++. +. ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 3469999999999999999988762 222223333332111 0000000 00000 0000 01 1234456666
Q ss_pred hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHHH
Q 040597 237 IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNESV 282 (515)
Q Consensus 237 L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 282 (515)
|..++=+|++|..- +.+....+.... ..|..|++||.+...
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 65566688889985 323322222221 236668888876543
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.96 E-value=0.071 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.-.+++|.|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988863
No 267
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.95 E-value=0.25 Score=50.22 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=54.3
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHH-HHHhcchhhhcccce-eeEEEeCCccc-HHHHHHHHHHHhc-----
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSDTFE-EIRVAKAIIEGLG----- 217 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~il~~l~----- 217 (515)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+... ..++.+.+...=.
T Consensus 164 raID~l~Pig----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 164 KAIDSMIPIG----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHHSCEE----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred cccccccccc----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 4666665431 2346889999999999996 5666632 3443 46677776544 4455555554211
Q ss_pred ---CCCCCcccHHH----HHHHHHHHh--cCCcEEEEeccc
Q 040597 218 ---ESASSLSEFQS----LMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 218 ---~~~~~~~~~~~----l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...++...... ..-.+.+++ +++..||++||+
T Consensus 236 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 236 VVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111111111 112233333 589999999998
No 268
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.88 E-value=0.068 Score=53.91 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=33.0
Q ss_pred CccccccchHHHHHHHHhcc---------CCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCE---------SSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.++.++.+...+... .......+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35677777666666555221 00012345688999999999999999887
No 269
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.87 E-value=0.12 Score=49.51 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
....++|+|+|-||+||||+|..+... ....=..++-|++..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 346789999999999999999877652 322222455666554
No 270
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.83 E-value=0.16 Score=53.23 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=51.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHh---
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIH-RSI--- 237 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~L--- 237 (515)
+++.|.|.+|.||||++..+... .... ...+.+..........+. +.++.. ..++..+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~Aa~~L~----e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGKAARRLG----EVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHHHHHHHH----HHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHHHHHHhH----hhhccc---HHHHHHHHcCCcchhhhhh
Confidence 58889999999999999888763 2222 234445544433222222 222211 111111110000 000
Q ss_pred --cCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEc
Q 040597 238 --EGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTT 277 (515)
Q Consensus 238 --~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTT 277 (515)
..+--+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0022489999986555445555555444 456666654
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.81 E-value=0.061 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.77 E-value=0.065 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998876
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.77 E-value=0.052 Score=47.55 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 274
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.77 E-value=0.056 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999886
No 275
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.76 E-value=0.045 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 276
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.76 E-value=0.079 Score=47.35 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+.|+|++|+||||+|..+++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988877
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.74 E-value=0.057 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 278
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.69 E-value=0.074 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999988763
No 279
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.67 E-value=0.28 Score=43.98 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=23.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFE 192 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 192 (515)
+.|+|-|..|+||||+++.+.+ .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 5789999999999999998887 3444444
No 280
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.65 E-value=0.23 Score=50.45 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=54.1
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHH-HHHhcchhhhcccce-eeEEEeCCccc-HHHHHHHHHHHhcCC---
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSDTFE-EIRVAKAIIEGLGES--- 219 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~il~~l~~~--- 219 (515)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+. . +-+. ++++-+.+... ..++.+.+...-...
T Consensus 151 raID~l~Pig----rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 151 KAIDSMIPIG----RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHHSSCCB----TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred eecccccccc----cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 4666665432 2346789999999999996 566663 1 3443 46677777544 445555555421111
Q ss_pred -----CCCcccHHH----HHHHHHHHh--cCCcEEEEeccc
Q 040597 220 -----ASSLSEFQS----LMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 220 -----~~~~~~~~~----l~~~l~~~L--~~kr~LlVLDdv 249 (515)
.++...... ..-.+.+++ +++..||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 112233333 589999999998
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.64 E-value=0.058 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998864
No 282
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.61 E-value=0.42 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998864
No 283
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.60 E-value=0.33 Score=44.52 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=47.7
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCC--------CC---C--cccHHHHH
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGES--------AS---S--LSEFQSLM 230 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~--------~~---~--~~~~~~l~ 230 (515)
+.|+|+.|.|||.+|..+... . . ..++++ +....-..+....+.. ++.. .. + ..+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 778999999999999877652 1 1 123333 3322222233333322 2211 00 0 12233333
Q ss_pred HHHHHHhcCCcEEEEecccCCCCcccccchhhhc
Q 040597 231 SHIHRSIEGKKFFLLLDDVWDGDYNKWEPFFFCV 264 (515)
Q Consensus 231 ~~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~l 264 (515)
.... .+.++--+||+|.++......+..+...+
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTC
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhc
Confidence 3333 23344569999999776545555555444
No 284
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.067 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999988764
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.58 E-value=0.065 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999998875
No 286
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.56 E-value=0.076 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+-|+|+|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.52 E-value=0.062 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999998865
No 288
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.52 E-value=0.033 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.51 E-value=0.063 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998865
No 290
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.46 E-value=0.2 Score=54.37 Aligned_cols=49 Identities=24% Similarity=0.176 Sum_probs=32.3
Q ss_pred ccccccchHHHHHHHHhccCC--------CCCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 136 EVFSGVDEKNELLNKLLCESS--------EQKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
++.|-++.++++.+.+..... .-...+-|.++|++|.|||.+|+.+++.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 455666656655554432110 1134556889999999999999999983
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.45 E-value=0.064 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998864
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.44 E-value=0.068 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998876
No 293
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.41 E-value=0.24 Score=44.99 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|.|.|..|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999873
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.40 E-value=0.066 Score=49.69 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998865
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.40 E-value=0.066 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 345899999999999999998865
No 296
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.39 E-value=0.21 Score=45.80 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=26.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEE
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVC 198 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 198 (515)
..+|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 36899999999999999999987322 23455344333
No 297
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.35 E-value=0.057 Score=48.92 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 298
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.33 E-value=0.22 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35788999999999999999988875
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.31 E-value=0.082 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998864
No 300
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.30 E-value=0.085 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999998886
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.30 E-value=0.072 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998876
No 302
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.29 E-value=0.076 Score=44.94 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 303
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.28 E-value=0.067 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 304
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.24 E-value=0.52 Score=57.91 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=45.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASSLSEFQSLMSHIHRSIEGKK 241 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~L~~kr 241 (515)
+-|.++|++|+|||++|+.+... . ..+ ....++.+...+...+...+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 56789999999999999777653 1 222 2445777776666655555444432210000000 000004678
Q ss_pred EEEEecccCC
Q 040597 242 FFLLLDDVWD 251 (515)
Q Consensus 242 ~LlVLDdvw~ 251 (515)
+++.+||+.-
T Consensus 1338 ~VlFiDEinm 1347 (2695)
T 4akg_A 1338 LVLFCDEINL 1347 (2695)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccccc
Confidence 9999999744
No 305
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.23 E-value=0.071 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998865
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.22 E-value=0.078 Score=50.11 Aligned_cols=23 Identities=39% Similarity=0.341 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.++.|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999988875
No 307
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.22 E-value=0.072 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999998876
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.17 E-value=0.08 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-+.|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.17 E-value=0.073 Score=49.82 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998865
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.16 E-value=0.072 Score=50.17 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998864
No 311
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.10 E-value=0.4 Score=47.24 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|......++...+..-. .....|.|.|.+|.||+++|+.++.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a---~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA---KSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---TSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh---ccchhheEEeCCCchHHHHHHHHHH
Confidence 46777666666655543221 1122367999999999999998886
No 312
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.08 E-value=0.096 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998863
No 313
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.04 E-value=0.078 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998875
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.02 E-value=0.081 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999998876
No 315
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.97 E-value=0.066 Score=52.61 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhc-ccce-eeEEEeCCc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKR-NFEK-VIWVCVSDT 202 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~~~~~ 202 (515)
--+.++.|..- ..-.-++|+|.+|+|||+|+..+.+. +.. +-+. ++++-+.+.
T Consensus 162 GiraID~l~Pi----grGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPI----GKGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCC----BTTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred cchhhhhcccc----cCCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 34677777643 22357899999999999999988873 322 2222 245666654
No 316
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.96 E-value=0.079 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998864
No 317
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.95 E-value=0.18 Score=47.16 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
++|+|.|-||+||||+|..+... ....=..+.-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCC
Confidence 57888999999999999877752 322222455666554
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.95 E-value=0.08 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 319
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.93 E-value=0.092 Score=55.64 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=33.5
Q ss_pred CccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 135 GEVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..++|.+.-++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46788887777666666522 4789999999999999999987
No 320
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.91 E-value=0.081 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998875
No 321
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.88 E-value=0.083 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999988764
No 322
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.86 E-value=0.2 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=18.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-..|+|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 323
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.85 E-value=0.086 Score=45.29 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999988764
No 324
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.79 E-value=0.13 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999998886
No 325
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.75 E-value=0.096 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 326
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.73 E-value=0.1 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999998876
No 327
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.69 E-value=0.19 Score=47.54 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=26.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
.++|+|.|-||+||||+|..+... ....=..+.-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 368888999999999999877753 222222355566544
No 328
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.68 E-value=0.27 Score=44.66 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=25.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCC
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSD 201 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 201 (515)
-.|.+.|.||+||||+|..+... .....++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~-l~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA-QLRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH-HHHTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHHCCCC-EEEEEeCC
Confidence 45788999999999999777763 2233343 34444443
No 329
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.62 E-value=0.097 Score=50.56 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998853
No 330
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.62 E-value=0.09 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999988764
No 331
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.61 E-value=0.38 Score=48.95 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=54.9
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHH-HHHhcchhh----hcccc-eeeEEEeCCccc-HHHHHHHHHHHhc-
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLA-QLAYNNDEV----KRNFE-KVIWVCVSDTFE-EIRVAKAIIEGLG- 217 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~- 217 (515)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+... ..++.+.+...=.
T Consensus 151 raID~l~Pig----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 151 KAVDSLVPIG----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHHSCCB----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeeccccccc----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 4667666432 2346789999999999996 566663211 01234 366777777554 4455555554211
Q ss_pred -------CCCCCcccHHH----HHHHHHHHh--cCCcEEEEeccc
Q 040597 218 -------ESASSLSEFQS----LMSHIHRSI--EGKKFFLLLDDV 249 (515)
Q Consensus 218 -------~~~~~~~~~~~----l~~~l~~~L--~~kr~LlVLDdv 249 (515)
...++...... ..-.+.+++ +++..||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11111111111 111233333 589999999998
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.60 E-value=0.09 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|+|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.59 E-value=0.12 Score=45.36 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 334
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.58 E-value=0.32 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999988865
No 335
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.54 E-value=0.1 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.48 E-value=0.1 Score=44.60 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 337
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.48 E-value=0.1 Score=44.32 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 338
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.1 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988763
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.48 E-value=0.14 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988765
No 340
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.45 E-value=0.25 Score=49.62 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhh--------cccc-eeeEEEeCCcc-cHHHHHHHHHHH
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVK--------RNFE-KVIWVCVSDTF-EEIRVAKAIIEG 215 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~il~~ 215 (515)
+.++.|..-. .-.-++|.|..|+|||+|+..+.+..... ++-+ .++++-+.+.. ...++.+++...
T Consensus 136 raID~l~pig----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 136 STIDVMNTLV----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHHTTSCCB----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeeecccccc----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 3556565332 22356889999999999998888743221 1111 45566666544 344555554432
Q ss_pred --hc------CCCCCcccH----HHHHHHHHHHh---cCCcEEEEeccc
Q 040597 216 --LG------ESASSLSEF----QSLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 216 --l~------~~~~~~~~~----~~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
+. ...++.... ....-.+.+++ +++..||++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 10 001111111 11122344444 378999999998
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.44 E-value=0.11 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.36 E-value=0.12 Score=44.53 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988764
No 343
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.35 E-value=0.34 Score=56.76 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS-----SLSEFQSLMSHIH 234 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 234 (515)
.-++|-|+|+.|+||||||.++.. .....=...+|++.....++.- ++.++.... .+..-++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 447999999999999999998886 3444556688998887776643 666665422 2233355555555
Q ss_pred HHh-cCCcEEEEeccc
Q 040597 235 RSI-EGKKFFLLLDDV 249 (515)
Q Consensus 235 ~~L-~~kr~LlVLDdv 249 (515)
..+ .+..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 555 356679999988
No 344
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.32 E-value=0.14 Score=44.62 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 345
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.28 E-value=0.11 Score=44.40 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999888764
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.27 E-value=0.11 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.26 E-value=0.077 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....|+|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987776
No 348
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.24 E-value=0.11 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998875
No 349
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.24 E-value=0.11 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888764
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.23 E-value=0.11 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888754
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.19 E-value=0.11 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 352
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.18 E-value=0.21 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998875
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.18 E-value=0.11 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999877654
No 354
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.18 E-value=0.16 Score=43.72 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999988764
No 355
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.14 E-value=0.12 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 356
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.10 E-value=0.083 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999998864
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.09 E-value=0.13 Score=44.86 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+.+|+|+.|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999988764
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.08 E-value=0.12 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999888753
No 359
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.03 E-value=0.12 Score=43.95 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 040597 164 ISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~ 183 (515)
|+|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998865
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.02 E-value=0.12 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999865
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.98 E-value=0.13 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|.|+|.+|+|||||...+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 362
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.97 E-value=0.11 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988763
No 363
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.96 E-value=0.078 Score=53.53 Aligned_cols=25 Identities=44% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...+|+|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 364
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.94 E-value=0.46 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998764
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.94 E-value=0.12 Score=44.45 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999988754
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.93 E-value=0.12 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999876
No 367
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.92 E-value=0.13 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 368
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.92 E-value=0.12 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888764
No 369
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.91 E-value=0.22 Score=46.42 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
+....+.|+|++|.|||.+|..+.+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3356799999999999999998886
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.91 E-value=0.14 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 371
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.91 E-value=0.28 Score=43.52 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=28.5
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHH
Q 040597 162 HVISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEI 206 (515)
Q Consensus 162 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 206 (515)
++|+|+ +-||+||||+|..+... ....-..+.-|+.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCHH
Confidence 578887 66999999999887763 33322346667766544433
No 372
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.88 E-value=0.59 Score=46.33 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=31.1
Q ss_pred ccccccchHHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 136 EVFSGVDEKNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.++|....+.++.+.+..-. ..... |.|.|..|+|||++|+.++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a--~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS--CAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT--TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc--CCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 35666666666666554432 22333 48999999999999998876
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.83 E-value=0.15 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888764
No 374
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.79 E-value=0.28 Score=42.78 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988853
No 375
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.78 E-value=0.13 Score=45.26 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 376
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.77 E-value=0.12 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.75 E-value=0.13 Score=43.84 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888753
No 378
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.70 E-value=0.18 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+..+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 4567999999999999999987654
No 379
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.66 E-value=0.32 Score=49.45 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcHHHHH-HHHhcchhhhcccce-eeEEEeCCccc-HHHHHHHHHHHhc--------CCCCCccc-----
Q 040597 162 HVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSDTFE-EIRVAKAIIEGLG--------ESASSLSE----- 225 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~----- 225 (515)
.-++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+... ..++.+.+...=. ...++...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999996 5777632 2343 46677776544 3444444433210 01111110
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEeccc
Q 040597 226 ---FQSLMSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 226 ---~~~l~~~l~~~L~~kr~LlVLDdv 249 (515)
.-.+.+.+++ +++..||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122333443 589999999998
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.66 E-value=0.14 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988764
No 381
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.65 E-value=0.27 Score=44.24 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=50.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESASS--LSEFQSLMSHIHRSIE 238 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~~L~ 238 (515)
-.+..++|..|.||||.+........ .......+ +.... +.+.-...+.+.++..... ..+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEE-EECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 46889999999999999977665322 22333333 33111 1111112344444332110 11111 2222233
Q ss_pred CCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccH
Q 040597 239 GKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNE 280 (515)
Q Consensus 239 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 280 (515)
++-=+|++|.+..-+.+..+.+....+ .|-.||+|-++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 333499999986544344433333222 266899998853
No 382
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.64 E-value=0.32 Score=47.44 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=29.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhh--cccceeeEEEeCCccc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVK--RNFEKVIWVCVSDTFE 204 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~~~~~~~ 204 (515)
...+++.+.|-||+||||+|..+... .. ..=..+.-|+.....+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSCH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCCC
Confidence 35688999999999999999877752 33 2223455666654433
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.63 E-value=0.14 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999988753
No 384
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.61 E-value=0.16 Score=43.93 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999888753
No 385
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.61 E-value=0.21 Score=42.91 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 386
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.60 E-value=0.13 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=19.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.--|+|+|.+|+|||||.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999976654
No 387
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.55 E-value=0.14 Score=50.30 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecccCCC-Ccccccchhhhccc--CCCCcEEEEEcccHHHHhhhC
Q 040597 227 QSLMSHIHRSIEGKKFFLLLDDVWDG-DYNKWEPFFFCVKN--GLHGSKILVTTRNESVARMMG 287 (515)
Q Consensus 227 ~~l~~~l~~~L~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~ 287 (515)
+...-.+.+.|..++=+|++|.--+. |...-..+...+.. ...|..||++|.+-..+..++
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 33344566677778889999986331 22222233333332 123677888898876665533
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.54 E-value=0.14 Score=45.28 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999988764
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.52 E-value=0.13 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999988764
No 390
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.51 E-value=0.14 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 391
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.49 E-value=0.77 Score=46.60 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHH-HHHhcchhhhcccce-eeEEEeCCccc-HHHHHHHHHHHhcCC---
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLA-QLAYNNDEVKRNFEK-VIWVCVSDTFE-EIRVAKAIIEGLGES--- 219 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~il~~l~~~--- 219 (515)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.+. .+-+. ++++-+.+... ..++.+.+...-...
T Consensus 151 kaID~l~Pig----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 151 KAVDSMIPIG----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHHSCCB----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eeeccccccc----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 3666666432 2346789999999999997 466652 23333 56788887554 445555554431111
Q ss_pred -----CCCcccH--------HHHHHHHHHHhcCCcEEEEeccc
Q 040597 220 -----ASSLSEF--------QSLMSHIHRSIEGKKFFLLLDDV 249 (515)
Q Consensus 220 -----~~~~~~~--------~~l~~~l~~~L~~kr~LlVLDdv 249 (515)
.++.... -.+.+.+++ +++..||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 1111111 112333333 689999999998
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.49 E-value=0.11 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 393
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.49 E-value=0.12 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|+|+.|+||||+|+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 394
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.48 E-value=0.44 Score=47.88 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccc----eeeEEEeCCcc-cHHHHHHHHHHHh--c-
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFE----KVIWVCVSDTF-EEIRVAKAIIEGL--G- 217 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~il~~l--~- 217 (515)
+.++.|..-. .-.-++|.|..|+|||+|+..+.+... .+-+ .++++-+.+.. ...++.+++...= .
T Consensus 140 raID~l~pig----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~r 213 (465)
T 3vr4_D 140 SAIDHLNTLV----RGQKLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDR 213 (465)
T ss_dssp HHHHTTSCCB----TTCBCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGG
T ss_pred eEEecccccc----cCCEEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccc
Confidence 3556665332 223468899999999999998887422 2223 45666666544 3455666554431 1
Q ss_pred -----CCCCCcccH----HHHHHHHHHHh---cCCcEEEEeccc
Q 040597 218 -----ESASSLSEF----QSLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 218 -----~~~~~~~~~----~~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
...+..... ....-.+.+++ +++..||++||+
T Consensus 214 tvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 214 SVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 011111111 11122344444 378999999998
No 395
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.47 E-value=0.11 Score=45.99 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 446789999999999999998853
No 396
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.47 E-value=0.34 Score=46.99 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 205 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 205 (515)
...+++.+.|-||+||||+|..+... ....=..+.-|+.....+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSSCHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCCCCh
Confidence 34678889999999999999877652 3232234556666544433
No 397
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.45 E-value=0.16 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+|+|.|+.|+||||+|+.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.39 E-value=0.15 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..-|+|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999987665
No 399
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.37 E-value=0.19 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988753
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.36 E-value=0.15 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888754
No 401
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.36 E-value=0.1 Score=46.63 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999887753
No 402
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.32 E-value=0.17 Score=44.59 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999988775
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.31 E-value=0.15 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998864
No 404
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.31 E-value=0.14 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 405
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.28 E-value=0.17 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999988753
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.27 E-value=0.16 Score=45.46 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.24 E-value=0.15 Score=44.18 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999988764
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.24 E-value=0.15 Score=44.04 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999888763
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.23 E-value=0.15 Score=44.00 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999888764
No 410
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.22 E-value=0.088 Score=55.55 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-|.++|++|+|||+||+.+++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 588999999999999998886
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.18 E-value=0.15 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 412
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.17 E-value=0.15 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999865
No 413
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.16 E-value=1.6 Score=47.53 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=46.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHHHHHHHHHHhcCCCC--------------C-----
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIRVAKAIIEGLGESAS--------------S----- 222 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------------~----- 222 (515)
.++.|+|+.|.||||++..+.........-...+.+......-...+...+...++.... .
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 478999999999999665553321111111233444444333334444555554432110 0
Q ss_pred cccHHHHHHHHHH-HhcCCcEEEEecccCC
Q 040597 223 LSEFQSLMSHIHR-SIEGKKFFLLLDDVWD 251 (515)
Q Consensus 223 ~~~~~~l~~~l~~-~L~~kr~LlVLDdvw~ 251 (515)
..+.+.+...+.. .+-.+--+||||.++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 1123444444333 2334557899999964
No 414
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.14 E-value=0.19 Score=51.68 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.+.|+.|+||||+|+.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 447899999999999999999987
No 415
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.14 E-value=0.29 Score=49.37 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=55.1
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcc--cceeeEEEeCCcc-cHHHHHHHHHHHhcC----
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRN--FEKVIWVCVSDTF-EEIRVAKAIIEGLGE---- 218 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~il~~l~~---- 218 (515)
+.++.|..-. .-.-++|.|.+|+|||+|+..++++....+. =+.++++-+.+.. ...++.+++...=..
T Consensus 141 r~ID~l~pig----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 141 STIDGTNTLV----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHHTTSCCB----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred Eeeeeeeccc----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 3566665332 2245678899999999999988874322111 1345666666544 345666666543111
Q ss_pred ----CCCCccc----HHHHHHHHHHHh---cCCcEEEEeccc
Q 040597 219 ----SASSLSE----FQSLMSHIHRSI---EGKKFFLLLDDV 249 (515)
Q Consensus 219 ----~~~~~~~----~~~l~~~l~~~L---~~kr~LlVLDdv 249 (515)
..+.... .....-.+.+++ +++..||++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111 111122233443 479999999997
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.13 E-value=0.15 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.13 E-value=0.15 Score=44.80 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999988764
No 418
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.09 E-value=0.17 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 419
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.08 E-value=0.2 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988764
No 420
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.08 E-value=0.23 Score=43.04 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999988764
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.07 E-value=0.16 Score=45.23 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457889999999999999988754
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.05 E-value=0.16 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457899999999999999988764
No 423
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.02 E-value=0.18 Score=48.41 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 158 QKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 158 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999988764
No 424
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.01 E-value=0.16 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 35899999999999999998864
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.99 E-value=0.3 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+||||+.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998876
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.96 E-value=0.17 Score=44.43 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999988763
No 427
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.94 E-value=0.16 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 040597 163 VISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999998765
No 428
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.93 E-value=0.16 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 040597 163 VISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 163 vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-|+|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999888754
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.16 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999988764
No 430
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.91 E-value=0.16 Score=44.98 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999988764
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.90 E-value=0.17 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999998865
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.89 E-value=0.16 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 35689999999999999998876
No 433
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.85 E-value=0.17 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.84 E-value=0.18 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.++|++|+||||+|+.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999886
No 435
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.84 E-value=0.23 Score=43.94 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999888754
No 436
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.78 E-value=0.17 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999864
No 437
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.78 E-value=0.17 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999988874
No 438
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.77 E-value=0.28 Score=44.99 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=25.9
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCccc
Q 040597 164 ISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFE 204 (515)
Q Consensus 164 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 204 (515)
|+|.|-||+||||+|..+... ....=..++-|+.....+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~--la~~g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI--MASDYDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH--HTTTCSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCcC
Confidence 566999999999999877763 222223456666655433
No 439
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.73 E-value=0.17 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999988764
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.73 E-value=0.17 Score=44.00 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcch
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNND 185 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 185 (515)
...-|+|+|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988653
No 441
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.73 E-value=0.2 Score=49.56 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcchhhhcccceee-EEEeCCcccHHHHHHHHHHH--hcCCCCCcccHHHHHHHHHHH
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVI-WVCVSDTFEEIRVAKAIIEG--LGESASSLSEFQSLMSHIHRS 236 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~il~~--l~~~~~~~~~~~~l~~~l~~~ 236 (515)
.-.+++|+|+.|+||||+++.+..- +.....+.+ ++.-.-......- ..++.+ ++. +. ..+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~---~~---~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhhhccC-ceEEEeeecCC---CH---HHHHHHHHHH
Confidence 3468999999999999999988762 222212333 3221100000000 000000 000 11 1224456666
Q ss_pred hcCCcEEEEecccCCCCcccccchhhhcccCCCCcEEEEEcccHH
Q 040597 237 IEGKKFFLLLDDVWDGDYNKWEPFFFCVKNGLHGSKILVTTRNES 281 (515)
Q Consensus 237 L~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 281 (515)
+...+=+|++|.+. +.+..... +.....|..|+.|+....
T Consensus 206 L~~~pd~illdE~~--d~e~~~~~---l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMR--DLETVETA---LRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCC--SHHHHHHH---HHHHTTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCC--CHHHHHHH---HHHHhcCCEEEEEECcch
Confidence 66677788999984 22332222 222234666777776544
No 442
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.70 E-value=0.18 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 443
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.69 E-value=0.38 Score=47.49 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCcEEEEEEe-cCCCcHHHHHHHHhcchhhhcccceeeEEEeC
Q 040597 159 KGLHVISLVG-LGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVS 200 (515)
Q Consensus 159 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 200 (515)
...++|+|+| -||+||||+|..+... ....=..++-|++.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 4678899885 8999999999877752 32222346677755
No 444
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.68 E-value=0.18 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999998864
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.66 E-value=0.19 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 446
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.66 E-value=0.18 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988764
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.66 E-value=0.17 Score=44.23 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 448
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.65 E-value=0.19 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999876
No 449
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.64 E-value=0.19 Score=43.68 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 450
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.64 E-value=0.18 Score=48.20 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999988764
No 451
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.62 E-value=0.18 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999988764
No 452
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.60 E-value=0.18 Score=44.56 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 453
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.56 E-value=0.36 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+++|.+|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988864
No 454
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.53 E-value=0.19 Score=45.10 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988764
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.53 E-value=0.22 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999988764
No 456
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.51 E-value=0.5 Score=42.31 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=28.3
Q ss_pred EEEEE-ecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 163 VISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 163 vv~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
+|+|+ +-||+||||+|..+... ....- .+.-|+.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCCHHH
Confidence 56665 67999999999888763 33333 677777776554443
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.50 E-value=0.18 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999988764
No 458
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.49 E-value=0.37 Score=44.88 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 459
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.45 E-value=0.29 Score=46.83 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHh
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAY 182 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 182 (515)
++++.+.+. -.+++|+|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~--------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE--------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT--------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc--------CcEEEEECCCCCCHHHHHHHHH
Confidence 455665543 2488999999999999999887
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.42 E-value=0.2 Score=44.51 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 461
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.42 E-value=0.19 Score=43.92 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999988754
No 462
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.40 E-value=0.74 Score=44.92 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
....++.+.|-||+||||+|..+..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH
Confidence 4556777789999999999977765
No 463
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.39 E-value=0.15 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999875
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.36 E-value=0.19 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999988754
No 465
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.35 E-value=0.24 Score=46.47 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999988764
No 466
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.33 E-value=0.27 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456889999999999999988763
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.33 E-value=0.2 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999988764
No 468
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.32 E-value=0.2 Score=49.65 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 345899999999999999998875
No 469
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.32 E-value=0.17 Score=49.78 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 470
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.30 E-value=0.28 Score=43.07 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988875
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.28 E-value=0.25 Score=43.99 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999888754
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.16 E-value=0.17 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999887
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.15 E-value=0.18 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 474
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.15 E-value=0.26 Score=43.33 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999988753
No 475
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.15 E-value=0.22 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3457899999999999999988764
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.13 E-value=0.22 Score=43.72 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999988864
No 477
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.12 E-value=0.39 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999988764
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.11 E-value=0.27 Score=42.53 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999988875
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.10 E-value=0.22 Score=44.49 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..--|+|+|.+|+|||||...+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999888753
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.04 E-value=0.21 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999888764
No 481
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.01 E-value=0.81 Score=47.01 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH-HHHHHHH
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE-IRVAKAI 212 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i 212 (515)
+.++.|..- ..-..++|.|..|+|||+|+..+.+. .+-+.++++-+.+.... .++++++
T Consensus 216 rvID~l~Pi----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQ----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCE----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCc----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 466777643 23357899999999999999988752 23356778888876544 4444443
No 482
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.89 E-value=0.23 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999888764
No 483
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.86 E-value=0.46 Score=44.26 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=30.1
Q ss_pred CCcEEEEEE-ecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccHHH
Q 040597 159 KGLHVISLV-GLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEEIR 207 (515)
Q Consensus 159 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 207 (515)
...++|+|+ |-||+||||+|..+... .. .=..+.-|++....+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~--la-~g~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATL--LS-KNNKVLLIDMDTQASITS 71 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHH--HT-TTSCEEEEEECTTCHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHH--HH-CCCCEEEEECCCCCCHHH
Confidence 356788875 56999999999888763 33 224566777765544433
No 484
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.83 E-value=0.25 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHH
Q 040597 159 KGLHVISLVGLGGIGKTTLAQLA 181 (515)
Q Consensus 159 ~~~~vv~I~G~gGiGKTtLA~~v 181 (515)
....-|.|.|.||+||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 44567889999999999999875
No 485
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.83 E-value=1.2 Score=46.05 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcc-cHHHHHHH
Q 040597 146 ELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTF-EEIRVAKA 211 (515)
Q Consensus 146 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~ 211 (515)
+.++.|..- ..-.-++|.|..|+|||+|+..+.+. .+-+.++++-+.+.. ...+++++
T Consensus 221 rvID~l~Pi----grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV----TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC----BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc----cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 467777643 23357899999999999999988763 233567777777653 33344443
No 486
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.78 E-value=0.18 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 487
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.75 E-value=0.26 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|.|++|+||||+|+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 488
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.72 E-value=0.14 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
-.+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998864
No 489
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.66 E-value=0.63 Score=44.89 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcchhhhcccceeeEEEeCCcccH
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNNDEVKRNFEKVIWVCVSDTFEE 205 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 205 (515)
..++...|-||+||||+|..+... ....=..+.-|+.....+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~--lA~~G~rVLlvD~D~~~~l 56 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALW--MARSGKKTLVISTDPAHSL 56 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEECCSSCCH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHH--HHHCCCcEEEEeCCCCcCH
Confidence 467777899999999999877652 3333233555555443333
No 490
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.66 E-value=0.23 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
No 491
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.65 E-value=0.43 Score=48.22 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=31.2
Q ss_pred cccchHHHHHHHHhccC-C--C---CCCcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 139 SGVDEKNELLNKLLCES-S--E---QKGLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 139 Gr~~~~~~l~~~L~~~~-~--~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
|-++-.+.+.+.+.... . . ......|+|+|.+|+|||||.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 44555566666554321 0 0 234568999999999999999998764
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.57 E-value=0.26 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
...+|.|.|++|+||||+|+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999998886
No 493
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.56 E-value=0.35 Score=46.14 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEEecCCCcHHHHHHHHhc
Q 040597 144 KNELLNKLLCESSEQKGLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 144 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
++++.+.+. -.+++|+|+.|+|||||.+.+..
T Consensus 160 v~~lf~~l~--------geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLK--------GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHS--------SSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhc--------CCeEEEECCCCCcHHHHHHHhcc
Confidence 455665553 24889999999999999998876
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.54 E-value=0.24 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
.--|+|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 495
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.53 E-value=0.25 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHhcc
Q 040597 161 LHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 161 ~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
-.+++|+|..|+|||||.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998873
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.49 E-value=0.3 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999888754
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.45 E-value=0.97 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.-..++|+|+.|+|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 346899999999999999998865
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.44 E-value=0.14 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=10.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHhcc
Q 040597 160 GLHVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 160 ~~~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999887653
No 499
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.41 E-value=0.21 Score=46.47 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYNN 184 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~~ 184 (515)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999988764
No 500
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.39 E-value=0.25 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 040597 162 HVISLVGLGGIGKTTLAQLAYN 183 (515)
Q Consensus 162 ~vv~I~G~gGiGKTtLA~~v~~ 183 (515)
.+++|+|+.|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4889999999999999998886
Done!