BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040598
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 148/277 (53%), Gaps = 27/277 (9%)
Query: 6 VSKEVVRPSSLDVHLLKPFKISLLDQLTPTTFSPLILFYPM-RNTHLKGTQISTQLKESL 64
VS+E++ PSS LK +KIS LDQL T P ILFYP +++L Q S LK+SL
Sbjct: 8 VSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSL 67
Query: 65 SKTLDPLYPFAARVRENLIINDYDEGVPYIETRVNTHLFEFLQN-PPMELLDQCLPYAPF 123
SK L YP A R+ N ++ D GVP++E RV L + +QN +E LDQ LP A +
Sbjct: 68 SKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAY 127
Query: 124 ---SYQPNPDQVPHAAVQLNTFDCGGIALGLCLSHKFIDGATASACHEAVTSKNLSEASI 180
+ N D VP AV+++ F+CGG A+G+ LSHK D + + A T+ E I
Sbjct: 128 PGGKIEVNED-VP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEI 185
Query: 181 I----------FPPQNPSPNHHLSVMEKIWFREAKSKTRRFVFDAKAIASLRSEC-KGER 229
+ FPP + +P+ L E + +RFVFD + I +LR++
Sbjct: 186 VLPNFDLAARHFPPVDNTPSPELVPDENV-------VMKRFVFDKEKIGALRAQASSASE 238
Query: 230 VPNPTRIEALSAFILKSAMLASRST--ANSRFVLHQA 264
N +R++ + A+I K + +R+ A ++FV+ QA
Sbjct: 239 EKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQA 275
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 27 SLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQLKESLSKTLDPLYPFAARVREN---- 81
S +D + P +P + FY P +++ ++ LK++LS+ L P YP A R++ +
Sbjct: 30 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRDEDGR 86
Query: 82 LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYAPFSYQPNPDQVPHAAVQLNT 141
+ I EGV ++E + + +F P L + +P Y +Q+
Sbjct: 87 IEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIP--AVDYSQGISSYALLVLQVTY 144
Query: 142 FDCGGIALGLCLSHKFIDG 160
F CGG++LG+ + H DG
Sbjct: 145 FKCGGVSLGVGMRHHAADG 163
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 27 SLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQLKESLSKTLDPLYPFAARVREN---- 81
S +D + P +P + FY P +++ ++ LK++LS+ L P YP A R++ +
Sbjct: 27 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRDEDGR 83
Query: 82 LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYAPFSYQPNPDQVPHAAVQLNT 141
+ I EGV ++E + + +F P L + +P Y +Q+
Sbjct: 84 IEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIP--AVDYSQGISSYALLVLQVTY 141
Query: 142 FDCGGIALGLCLSHKFIDG 160
F CGG++LG+ + H DG
Sbjct: 142 FKCGGVSLGVGMRHHAADG 160
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 27 SLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQLKESLSKTLDPLYPFAARVREN---- 81
S +D + P +P + FY P +++ ++ LK++LS+ L P YP A R++ +
Sbjct: 30 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV---LKDALSRALVPFYPMAGRLKRDEDGR 86
Query: 82 LIINDYDEGVPYIETRVNTHLFEFLQNPPMELLDQCLPYAPFSYQPNPDQVPHAAVQLNT 141
+ I EGV ++E + + +F P L + +P Y +Q+
Sbjct: 87 IEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIP--AVDYSQGISSYALLVLQVTY 144
Query: 142 FDCGGIALGLCLSHKFIDG 160
F GG++LG+ + H DG
Sbjct: 145 FKXGGVSLGVGMRHHAADG 163
>pdb|3N41|B Chain B, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|B Chain B, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|B Chain B, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|B Chain B, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 360
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 143 DCGGIALGLCLSHKFIDGATASACHEAVTSKNLSEASIIFPPQN 186
+CGG GL + K I+ CH AVT+ + + P+N
Sbjct: 202 NCGGSNEGLTTTDKVINNCKVDQCHAAVTNHKKWQYNSPLVPRN 245
>pdb|3N40|P Chain P, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 401
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 143 DCGGIALGLCLSHKFIDGATASACHEAVTSKNLSEASIIFPPQN 186
+CGG GL + K I+ CH AVT+ + + P+N
Sbjct: 262 NCGGSNEGLTTTDKVINNCKVDQCHAAVTNHKKWQYNSPLVPRN 305
>pdb|2XFB|B Chain B, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|E Chain E, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|G Chain G, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|I Chain I, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 334
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 143 DCGGIALGLCLSHKFIDGATASACHEAVTSKNLSEASIIFPPQN 186
+CGG GL + K I+ CH AVT+ + + P+N
Sbjct: 195 NCGGSNEGLTTTDKVINNCKVDQCHAAVTNHKKWQYNSPLVPRN 238
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 46 MRNTHLKGTQISTQLKESLSKTLDPLYPFAARV-RENLIINDYDEGVPYIETRVNTHLFE 104
MR +G + + E +++ ++PL P A E++ + Y++G P E + +FE
Sbjct: 73 MRGVESQGMLLCASI-EGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFE 131
Query: 105 FLQ 107
LQ
Sbjct: 132 KLQ 134
>pdb|2XFC|B Chain B, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|E Chain E, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|G Chain G, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|I Chain I, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 423
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 143 DCGGIALGLCLSHKFIDGATASACHEAVTSKNLSEASIIFPPQN 186
+CGG GL + K I+ CH AVT+ + + P+N
Sbjct: 202 NCGGSNEGLTTTDKVINNCKVDQCHAAVTNHKKWQYNSPLVPRN 245
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 41 ILFYPMRNTHLKGTQ-ISTQLKESLSKTLDPLYPFAARV-------RENLIINDYDEGVP 92
+ FY + T + T+ + +K SLS TL YPF ++ ++ I + V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA 104
Query: 93 YIETRVNTHLFEFLQNPPMELLDQCLPYAPF----SYQPNPDQVPHAAVQLNTFDCGGIA 148
N L E N P D+ P + + ++P +VQ+ F GIA
Sbjct: 105 VTFAECNLDLNELTGNHPRNC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIA 163
Query: 149 LGLCLSHKFIDGATASACHEAVTS 172
+G+ H D +T +A TS
Sbjct: 164 IGITNHHCLGDASTRFCFLKAWTS 187
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 41 ILFYPMRNTHLKGTQ-ISTQLKESLSKTLDPLYPFAARV-------RENLIINDYDEGVP 92
+ FY + T + T+ + +K SLS TL YPF ++ ++ I + V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA 104
Query: 93 YIETRVNTHLFEFLQNPPMELLDQCLPYAPF----SYQPNPDQVPHAAVQLNTFDCGGIA 148
N L E N P D+ P + + ++P +VQ+ F GIA
Sbjct: 105 VTFAECNLDLNELTGNHPRNC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIA 163
Query: 149 LGLCLSHKFIDGATASACHEAVTS 172
+G+ H D +T +A TS
Sbjct: 164 IGITNHHCLGDASTRFCFLKAWTS 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,306,059
Number of Sequences: 62578
Number of extensions: 271346
Number of successful extensions: 753
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 13
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)