BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040601
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYL------MKLGSSSSDGDLFKMAGELFLV 57
RQ+KL+LVLDLDHTLL+ + L ++ EYL ++ G + S G LF + +
Sbjct: 119 RQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLEFMQMMT 177
Query: 58 KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
KLRP++ FLKEAS+M+ +Y+ T G R+YA MAKLLD K
Sbjct: 178 KLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPK 217
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDG---DLFKMAGELFLVK 58
++ +KL LVLD+DHTLL++ + + S+ E L K + LF+ K
Sbjct: 922 MFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTK 981
Query: 59 LRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
LRP I FL++ASK+YE++L T G + YA MAKLLD K
Sbjct: 982 LRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPK 1020
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL-FKMAGELFLVKLRPYI 63
Q KL LVLDLD T+LH G+SS +G + F + + VKLRP +
Sbjct: 58 QMKLILVLDLDQTVLHTT---------------YGTSSLEGTVKFVIDRCRYCVKLRPNL 102
Query: 64 RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
L+ SK+YEI++ T G R+YA + +++D
Sbjct: 103 DYMLRRISKLYEIHVYTMGTRAYAERIVEIID 134
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 23/115 (20%)
Query: 4 RQKKLHLVLDLDHTLLH-AVDIDILASK-------------------DREYLMKLGSSSS 43
R KKL LV+DLD T++H VD I K D E ++ L +
Sbjct: 171 RDKKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMND 230
Query: 44 DGDLFK---MAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
DG + + + + VK+RP +++F + + ++E+++ T R+YA+ +AK++D
Sbjct: 231 DGSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVD 285
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 24/107 (22%)
Query: 4 RQKKLHLVLDLDHTLLHA---------------VDIDILASKDREYLMKLGSSSSDGDLF 48
++K+L L++DLD T++HA V+ D+L R + ++ G S
Sbjct: 161 QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDV-RSFNLQEGPSGYT---- 215
Query: 49 KMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
+ +K RP + +FL++ S++YE+++ T G ++YA +AK++D
Sbjct: 216 ----SCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 258
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDRE-YLMKLGSSSSDGDLFKMAGELFL-VKL 59
++R +KL L++DLD TL+H + ++ + +LG GE L +L
Sbjct: 177 LHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGR-----------GEPMLHTRL 225
Query: 60 RPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
RP+ + FL++ +K+YE+++ T G R YA +A LD
Sbjct: 226 RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLD 261
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDRE-YLMKLGSSSSDGDLFKMAGELFL-VKL 59
++R +KL L++DLD TL+H + ++ + +LG GE L +L
Sbjct: 177 LHRNRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGR-----------GEPMLHTRL 225
Query: 60 RPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
RP+ + FL++ +K+YE+++ T G R YA +A LD
Sbjct: 226 RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLD 261
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S+MYEI L T + YA + +LD K
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S+MYEI L T + YA + +LD K
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S+MYEI L T + YA + +LD K
Sbjct: 336 LERMSQMYEIILFTASKKVYADKLLNILDPK 366
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL----FKMAG--ELFLVK 58
QKK LV+DLD TL+H+ AS+ + S+SS G L F ++G L+ +
Sbjct: 249 QKKKKLVIDLDETLIHS------ASRSTTH-----SNSSQGHLVEVKFGLSGIRTLYFIH 297
Query: 59 LRPYIRKFLKEASKMYEIYLCTTGIRSYA 87
RPY FL + SK Y++ + T ++ YA
Sbjct: 298 KRPYCDLFLTKVSKWYDLIIFTASMKEYA 326
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S++YEI L T + YA + +LD K
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK 366
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S++YEI L T + YA + +LD K
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK 366
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S++YEI L T + YA + +LD K
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK 366
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S++YEI L T + YA + +LD K
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK 366
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 290 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 338
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L+ S++YEI L T + YA + +LD K
Sbjct: 339 LERMSQIYEIILFTASKKVYADKLLNILDPK 369
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
+ LVLDLD TL+H ++ L + + LF+ V+LRP+ R+F
Sbjct: 281 EFSLVLDLDETLVHC-SLNELDDAALTFPV----------LFQDVIYQVYVRLRPFFREF 329
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
L+ S++YEI L T + YA + +LD
Sbjct: 330 LERMSQIYEIILFTASKKVYADKLLNILD 358
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 56 LVKLRPY---IRKFLK-EASKMYEIYLCTTGIRSYAVMMAKLLD 95
LVKLRP +R +L + K +E+Y+CT R YA+ M +LLD
Sbjct: 255 LVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLD 298
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL-FKMAGELFLVKLRPYIRKFLK 68
LVLDLD TL+H L L +++ + F+ V+LRP++R FL
Sbjct: 67 LVLDLDETLVHC------------SLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLS 114
Query: 69 EASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
+K +EI + T + YA + +LD +
Sbjct: 115 RMAKTFEIIIFTASKKVYANKLCDILDPR 143
>sp|Q6GZT9|037R_FRG3G uncharacterized protein 037R OS=Frog virus 3 (isolate Goorha)
GN=FV3-037R PE=4 SV=1
Length = 209
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 8 LHLVLDLDHTLLHAVDIDILA-SKDREYLMK--------------LGSSSSDGDLFK-MA 51
+ + LDLD TL+H++ + L +K + Y +K +GSS + D K +A
Sbjct: 1 MQVFLDLDETLIHSIPVSRLGWTKSKPYPVKPFTVQDAGTPLSVMMGSSKAVNDGRKRLA 60
Query: 52 GELFLVK----------LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLDLK 97
L L K RP +R FL + Y+I + T + YA+ + K L+LK
Sbjct: 61 TRLSLFKRTVLTDHIMCWRPTLRTFLNGLFASGYKINVWTAASKPYALEVVKALNLK 117
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPY 62
++QKK L+LDLD TL+H+ + S D +++ + ++ ++++K RP
Sbjct: 224 FQQKKC-LILDLDETLVHS-SFKYMHSAD--FVLPV-------EIDDQVHNVYVIK-RPG 271
Query: 63 IRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
+ +FL S++YE+ + T + YA + LD
Sbjct: 272 VDEFLNRVSQLYEVVVFTASVSRYANPLLDTLD 304
>sp|O14595|CTDS2_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2
Length = 271
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
Q ++ +V+DLD TL+H+ I + ++++ + ++ +++++K RPY+
Sbjct: 99 QGRICVVIDLDETLVHSSFKPI---NNADFIVPI-------EIEGTTHQVYVLK-RPYVD 147
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
+FL+ +++E L T + YA + LLD
Sbjct: 148 EFLRRMGELFECVLFTASLAKYADPVTDLLD 178
>sp|Q8BX07|CTDS2_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1
Length = 270
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
Q ++ +V+DLD TL+H+ I + ++++ + ++ +++++K RPY+
Sbjct: 98 QGRICVVIDLDETLVHSSFKPI---NNADFIVPV-------EIEGTTHQVYVLK-RPYVD 146
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
+FL+ +++E L T + YA + LLD
Sbjct: 147 EFLRRMGELFECVLFTASLAKYADPVTDLLD 177
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 56 LVKLRPY---IRKFLK-EASKMYEIYLCTTGIRSYAVMMAKLLD 95
LV++RP +R +L + K +E+Y+CT R YA+ M +LLD
Sbjct: 272 LVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLD 315
>sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nem1 PE=3 SV=1
Length = 476
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFK--MAGE---LFLVKLRPYIR 64
LVLDLD TL+H+V GS ++ G + + GE L+ + RP++
Sbjct: 306 LVLDLDETLIHSV--------------SRGSRTTSGQPIEVHVPGEHPILYYIHKRPHLD 351
Query: 65 KFLKEASKMYEIYLCTTGIRSYA 87
FL S+ + + L T ++ YA
Sbjct: 352 YFLSNVSQWFRLILFTASVQPYA 374
>sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1
Length = 261
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
K+ +V+DLD TL+H+ + ++++ + ++ + +++++K RP++ +F
Sbjct: 90 KICVVIDLDETLVHS---SFKPVNNADFIIPV-------EIDGVVHQVYVLK-RPHVDEF 138
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
L+ +++E L T + YA +A LLD
Sbjct: 139 LQRMGELFECVLFTASLAKYADPVADLLD 167
>sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1
Length = 261
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
K+ +V+DLD TL+H+ + ++++ + ++ + +++++K RP++ +F
Sbjct: 90 KICVVIDLDETLVHS---SFKPVNNADFIIPV-------EIDGVVHQVYVLK-RPHVDEF 138
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
L+ +++E L T + YA +A LLD
Sbjct: 139 LQRMGELFECVLFTASLAKYADPVADLLD 167
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 1 MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLR 60
M +KKL ++LDLD+TL+ A D+D + K R L + +M + + + R
Sbjct: 1 MENNKKKL-ILLDLDNTLICAEDLDTVKDKKR-----LSQAQKQFRTVRME-DYYDIFER 53
Query: 61 PYIRKFLKEASKMYEIYLCTTGIRSYAVMMAK 92
P++++FL K +++ + T + YA+ + K
Sbjct: 54 PHLQEFLDYLFKNFKVGVWTASSKDYAIFVIK 85
>sp|Q91FG9|VF355_IIV6 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 6 GN=IIV6-355R PE=3 SV=1
Length = 182
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLK 68
++ LDLD+TL+ A + + L + +S D FK + +L+ RPY++ FL
Sbjct: 3 NIFLDLDNTLICAEPFEDITD-----LGRFKERASHFD-FKNMEDYYLICGRPYLQPFLD 56
Query: 69 EASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
K + +++ T + YA + + LK
Sbjct: 57 YLFKNFNVHIWTAASKGYASFIIEEFILK 85
>sp|Q5U3T3|CNEPB_DANRE CTD nuclear envelope phosphatase 1B OS=Danio rerio GN=ctdnep1b PE=2
SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 65 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 116
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 117 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 147
>sp|P58465|CTDSL_MOUSE CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2
SV=3
Length = 276
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
+V+DLD TL+H+ I + ++++ + DG + +++++K RP++ +FL+
Sbjct: 109 VVIDLDETLVHSSFKPI---SNADFIVPV---EIDGTIH----QVYVLK-RPHVDEFLQR 157
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
+++E L T + YA +A LLD
Sbjct: 158 MGQLFECVLFTASLAKYADPVADLLD 183
>sp|Q28HW9|CNEP1_XENTR CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1
PE=2 SV=1
Length = 244
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1
SV=2
Length = 276
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
+V+DLD TL+H+ I + ++++ + DG + +++++K RP++ +FL+
Sbjct: 109 VVIDLDETLVHSSFKPI---SNADFIVPV---EIDGTIH----QVYVLK-RPHVDEFLQR 157
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
+++E L T + YA +A LLD
Sbjct: 158 MGQLFECVLFTASLAKYADPVADLLD 183
>sp|Q5U395|CNEPA_DANRE CTD nuclear envelope phosphatase 1A OS=Danio rerio GN=ctdnep1a PE=2
SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 65 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 116
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 117 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 147
>sp|Q3B7T6|CNEP1_RAT CTD nuclear envelope phosphatase 1 OS=Rattus norvegicus GN=Ctdnep1
PE=2 SV=2
Length = 244
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|Q3TP92|CNEP1_MOUSE CTD nuclear envelope phosphatase 1 OS=Mus musculus GN=Ctdnep1 PE=2
SV=2
Length = 244
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|O95476|CNEP1_HUMAN CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1
SV=2
Length = 244
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|Q1RMV9|CNEP1_BOVIN CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2
SV=1
Length = 244
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 10 LVLDLDHTLLHAVDIDILASKDR-----EYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
LVLDLD TL+H+ +L R ++++K+ + F V RP++
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKV--------VIDKHPVRFFVHKRPHVD 115
Query: 65 KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
FL+ S+ YE+ + T + Y +A LD
Sbjct: 116 FFLEVVSQWYELVVFTASMEIYGSAVADKLD 146
>sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2
SV=2
Length = 275
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
+V+DLD TL+H+ I + ++++ + DG + +++++K RP++ +FL+
Sbjct: 108 VVIDLDETLVHSSFKPI---SNADFIVPV---EIDGTIH----QVYVLK-RPHVDEFLQR 156
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
+++E L T + YA +A LLD
Sbjct: 157 MGELFECVLFTASLAKYADPVADLLD 182
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
L+LDLD TL+H+ + D +++ D + K RP + +FLK+
Sbjct: 160 LILDLDETLVHS-SFKYIEPADFVVSIEIDGLQHDVRVVK----------RPGVDEFLKK 208
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
M+EI + T + YA + +LD
Sbjct: 209 MGDMFEIVVFTASLAKYADPVLDMLD 234
>sp|Q20432|CNEP1_CAEEL CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
elegans GN=scpl-2 PE=3 SV=1
Length = 246
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSS--SDGDLFKMAGELFLVKLRPYIRKFL 67
LVLDLD TL+H+ +L +K G+ S + + F V RP++ FL
Sbjct: 60 LVLDLDETLIHSHHDGVLRQT-----VKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYFL 114
Query: 68 KEASKMYEIYLCTTGIRSYAVMMAKLLD 95
S+ YE+ + T + Y +A LD
Sbjct: 115 SVVSQWYELVVFTASMEVYGTSVADRLD 142
>sp|P49010|HEXC_BOMMO Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Bombyx
mori PE=1 SV=1
Length = 596
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 25 DILASKDREYLMKLGSSSSDGDLFKMAGE---LFLVKLRPYIRKFLKEASKMYEIYLCTT 81
D+L + + + SS G K AG+ ++LV PYIR+F + + YE+Y+ +T
Sbjct: 101 DLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVNENPYIREFSLDMDESYELYISST 160
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
L+LDLD TL+H+ L S D +++ + ++ ++++K RP + +FL+
Sbjct: 260 LILDLDETLVHS-SFKYLRSAD--FVLSV-------EIDDQVHNVYVIK-RPGVEEFLER 308
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
K++E+ + T + Y + +LD
Sbjct: 309 VGKLFEVVVFTASVSRYGDPLLDILD 334
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
K+ LVLDLD TL+H + L + + F K RP+ +F
Sbjct: 390 KISLVLDLDETLVHC-STEPLEQPHLTFPV----------FFNNTEYQVFAKKRPFFEEF 438
Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
L + S ++E+ + T YA + ++D
Sbjct: 439 LHKVSDIFEVIIFTASQEVYANKLLNMID 467
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKE 69
LVLDLD TL+H+ + ++++ + ++ ++++VK RP++ FL+
Sbjct: 139 LVLDLDETLVHS---SFKPVHNPDFIVPV-------EIEGTIHQVYVVK-RPFVDDFLRA 187
Query: 70 ASKMYEIYLCTTGIRSYAVMMAKLLD 95
++ +EI + T + YA + LD
Sbjct: 188 IAEKFEIVVFTASLAKYADPVLDFLD 213
>sp|Q61C05|CNEP1_CAEBR CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
briggsae GN=scpl-2 PE=3 SV=1
Length = 246
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSS--SDGDLFKMAGELFLVKLRPYIRKFL 67
LVLDLD TL+H+ +L +K G+ S + + F V RP++ FL
Sbjct: 60 LVLDLDETLIHSHHDGVLRQT-----VKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYFL 114
Query: 68 KEASKMYEIYLCTTGIRSYAVMMAKLLD 95
S+ YE+ + T + Y +A LD
Sbjct: 115 TVVSQWYELVVFTASMEVYGSSVADKLD 142
>sp|Q92AQ7|Y1863_LISIN Uncharacterized RNA methyltransferase lin1863 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=lin1863 PE=3 SV=1
Length = 453
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSD 44
+ QK+ H ++D+ L+H D+ K RE L K G+ D
Sbjct: 148 FYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYD 189
>sp|Q71YR7|Y1776_LISMF Uncharacterized RNA methyltransferase LMOf2365_1776 OS=Listeria
monocytogenes serotype 4b (strain F2365)
GN=LMOf2365_1776 PE=3 SV=1
Length = 453
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSD 44
+ QK+ H ++D+ L+H D K RE L K G+ D
Sbjct: 148 FYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYD 189
>sp|Q8Y6D6|Y1751_LISMO Uncharacterized RNA methyltransferase lmo1751 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=lmo1751 PE=3 SV=1
Length = 453
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSD 44
+ QK+ H ++D+ L+H D K RE L K G+ D
Sbjct: 148 FYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYD 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,941,684
Number of Sequences: 539616
Number of extensions: 1069795
Number of successful extensions: 3760
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3675
Number of HSP's gapped (non-prelim): 62
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)