Query 040601
Match_columns 97
No_of_seqs 148 out of 1129
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02250 FCP1_euk FCP1-like p 99.9 3.1E-27 6.6E-32 159.3 9.6 95 2-97 1-97 (156)
2 TIGR02251 HIF-SF_euk Dullard-l 99.9 3.9E-25 8.5E-30 149.4 7.2 81 7-97 1-81 (162)
3 KOG1605 TFIIF-interacting CTD 99.9 1.8E-23 4E-28 150.7 3.1 83 3-96 85-169 (262)
4 PF03031 NIF: NLI interacting 99.9 3E-22 6.6E-27 133.6 8.7 75 8-97 1-75 (159)
5 TIGR02245 HAD_IIID1 HAD-superf 99.9 3.5E-22 7.7E-27 139.0 7.8 67 3-96 17-83 (195)
6 KOG0323 TFIIF-interacting CTD 99.8 4.5E-20 9.8E-25 145.4 5.2 94 3-97 142-240 (635)
7 smart00577 CPDc catalytic doma 99.8 7.1E-19 1.5E-23 116.9 8.2 83 6-96 1-83 (148)
8 KOG2832 TFIIF-interacting CTD 99.4 1.7E-13 3.7E-18 102.3 5.4 68 4-97 186-253 (393)
9 COG5190 FCP1 TFIIF-interacting 99.4 3.5E-13 7.5E-18 101.9 5.6 83 4-97 209-291 (390)
10 COG5190 FCP1 TFIIF-interacting 98.8 6.4E-09 1.4E-13 78.9 3.6 94 2-97 21-115 (390)
11 TIGR01684 viral_ppase viral ph 98.7 6.3E-08 1.4E-12 71.4 6.1 59 5-95 124-184 (301)
12 PHA03398 viral phosphatase sup 98.6 7.2E-08 1.6E-12 71.1 5.6 60 4-95 125-186 (303)
13 cd01427 HAD_like Haloacid deha 98.4 8.4E-07 1.8E-11 55.3 5.6 61 9-95 1-62 (139)
14 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 7.2E-07 1.6E-11 57.9 5.0 38 58-95 29-68 (128)
15 TIGR01662 HAD-SF-IIIA HAD-supe 98.3 2.3E-06 5.1E-11 55.0 6.7 62 8-95 1-71 (132)
16 TIGR01672 AphA HAD superfamily 98.3 2.6E-06 5.6E-11 61.0 7.4 87 4-95 60-156 (237)
17 TIGR01685 MDP-1 magnesium-depe 98.3 5.9E-06 1.3E-10 56.7 7.5 81 7-95 2-84 (174)
18 TIGR01656 Histidinol-ppas hist 98.2 4.5E-06 9.9E-11 55.0 6.4 53 8-84 1-54 (147)
19 TIGR01664 DNA-3'-Pase DNA 3'-p 98.2 1E-05 2.2E-10 54.8 7.4 67 7-95 13-92 (166)
20 TIGR01533 lipo_e_P4 5'-nucleot 98.1 1.7E-05 3.8E-10 57.7 6.9 82 4-93 72-154 (266)
21 PF12689 Acid_PPase: Acid Phos 98.0 2.4E-05 5.3E-10 53.5 6.8 81 6-95 2-84 (169)
22 TIGR00338 serB phosphoserine p 98.0 3E-06 6.6E-11 58.5 2.2 40 56-95 83-123 (219)
23 TIGR01261 hisB_Nterm histidino 98.0 2.3E-05 5E-10 52.9 6.3 65 8-95 2-82 (161)
24 PRK08238 hypothetical protein; 98.0 5.9E-06 1.3E-10 64.4 3.1 38 58-95 72-110 (479)
25 PRK11009 aphA acid phosphatase 98.0 3.8E-05 8.2E-10 55.1 7.0 87 5-94 61-155 (237)
26 TIGR00213 GmhB_yaeD D,D-heptos 98.0 4.6E-05 9.9E-10 51.5 7.0 51 8-84 2-53 (176)
27 TIGR01663 PNK-3'Pase polynucle 97.9 4.6E-05 1E-09 60.1 7.4 70 4-95 165-247 (526)
28 PRK08942 D,D-heptose 1,7-bisph 97.9 5.7E-05 1.2E-09 51.1 6.9 53 7-84 3-56 (181)
29 PF05152 DUF705: Protein of un 97.9 4.7E-05 1E-09 56.0 6.4 61 4-95 119-180 (297)
30 TIGR01686 FkbH FkbH-like domai 97.8 3.8E-05 8.3E-10 56.7 5.3 65 6-93 2-67 (320)
31 PF08645 PNK3P: Polynucleotide 97.7 4E-05 8.7E-10 51.7 3.8 53 8-82 1-54 (159)
32 TIGR01422 phosphonatase phosph 97.7 5.9E-05 1.3E-09 53.4 4.7 38 57-94 98-136 (253)
33 PF13344 Hydrolase_6: Haloacid 97.5 0.00024 5.2E-09 44.5 5.1 32 59-90 15-51 (101)
34 PHA02530 pseT polynucleotide k 97.5 0.00023 5E-09 51.4 5.7 70 4-95 155-225 (300)
35 PRK05446 imidazole glycerol-ph 97.5 0.00032 7E-09 53.0 6.5 54 6-82 1-55 (354)
36 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00027 5.8E-09 47.8 5.5 59 4-95 22-82 (170)
37 PRK13478 phosphonoacetaldehyde 97.5 0.00017 3.6E-09 51.6 4.1 37 57-93 100-137 (267)
38 TIGR01689 EcbF-BcbF capsule bi 97.4 0.00037 8.1E-09 45.6 4.7 53 8-88 2-55 (126)
39 TIGR01670 YrbI-phosphatas 3-de 97.4 0.001 2.2E-08 44.3 6.9 37 57-95 29-66 (154)
40 COG4996 Predicted phosphatase 97.4 0.0011 2.3E-08 44.3 6.7 76 9-95 2-79 (164)
41 PRK11133 serB phosphoserine ph 97.4 9E-05 2E-09 55.2 1.7 40 56-95 179-219 (322)
42 COG2179 Predicted hydrolase of 97.3 0.00065 1.4E-08 46.6 5.6 61 2-95 23-84 (175)
43 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.3 0.00048 1E-08 48.7 5.1 54 6-94 7-63 (242)
44 PRK00192 mannosyl-3-phosphogly 97.3 0.00061 1.3E-08 48.9 5.6 55 7-95 4-59 (273)
45 PF08282 Hydrolase_3: haloacid 97.2 0.0007 1.5E-08 46.4 5.1 51 10-94 1-52 (254)
46 PRK03669 mannosyl-3-phosphogly 97.2 0.0014 2.9E-08 47.1 6.6 22 1-22 1-22 (271)
47 COG0561 Cof Predicted hydrolas 97.1 0.0014 3E-08 46.6 5.8 18 6-23 2-19 (264)
48 TIGR02463 MPGP_rel mannosyl-3- 97.1 0.0016 3.6E-08 45.0 5.5 13 10-22 2-14 (221)
49 TIGR01487 SPP-like sucrose-pho 97.0 0.0023 4.9E-08 44.2 5.8 14 8-21 2-15 (215)
50 TIGR00099 Cof-subfamily Cof su 97.0 0.0023 5E-08 45.2 5.8 13 10-22 2-14 (256)
51 PRK10444 UMP phosphatase; Prov 97.0 0.0018 4E-08 46.4 5.3 14 9-22 3-16 (248)
52 TIGR02461 osmo_MPG_phos mannos 96.9 0.0028 6.1E-08 44.7 5.6 12 10-21 2-13 (225)
53 PRK10513 sugar phosphate phosp 96.9 0.0032 6.9E-08 44.7 5.9 16 7-22 3-18 (270)
54 PRK10530 pyridoxal phosphate ( 96.8 0.005 1.1E-07 43.6 6.5 16 7-22 3-18 (272)
55 TIGR01456 CECR5 HAD-superfamil 96.8 0.0042 9.1E-08 46.0 6.0 51 8-93 1-60 (321)
56 PRK06769 hypothetical protein; 96.7 0.0045 9.8E-08 41.9 5.3 28 57-84 27-55 (173)
57 smart00775 LNS2 LNS2 domain. T 96.7 0.0044 9.6E-08 41.6 5.1 55 10-87 2-57 (157)
58 PLN02645 phosphoglycolate phos 96.7 0.0038 8.2E-08 46.0 5.1 50 7-91 28-78 (311)
59 PRK01158 phosphoglycolate phos 96.7 0.0065 1.4E-07 42.0 5.9 15 8-22 4-18 (230)
60 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.7 0.0052 1.1E-07 44.1 5.5 47 8-85 2-49 (257)
61 PRK09552 mtnX 2-hydroxy-3-keto 96.7 0.0029 6.4E-08 43.9 4.1 39 56-94 72-111 (219)
62 COG0647 NagD Predicted sugar p 96.6 0.0045 9.7E-08 45.3 5.0 55 5-94 6-61 (269)
63 TIGR01484 HAD-SF-IIB HAD-super 96.6 0.0067 1.5E-07 41.3 5.6 12 10-21 2-13 (204)
64 PRK10976 putative hydrolase; P 96.6 0.007 1.5E-07 42.9 5.8 15 8-22 3-17 (266)
65 PRK15126 thiamin pyrimidine py 96.6 0.008 1.7E-07 42.9 5.9 15 8-22 3-17 (272)
66 TIGR03333 salvage_mtnX 2-hydro 96.5 0.0052 1.1E-07 42.6 4.4 40 56-95 68-108 (214)
67 TIGR01486 HAD-SF-IIB-MPGP mann 96.5 0.008 1.7E-07 42.6 5.4 14 10-23 2-15 (256)
68 TIGR01675 plant-AP plant acid 96.5 0.022 4.9E-07 40.8 7.6 83 4-94 74-157 (229)
69 TIGR01482 SPP-subfamily Sucros 96.4 0.0068 1.5E-07 41.7 4.8 13 10-22 1-13 (225)
70 TIGR01452 PGP_euk phosphoglyco 96.4 0.0084 1.8E-07 43.3 5.4 41 8-83 3-44 (279)
71 PRK10187 trehalose-6-phosphate 96.4 0.0085 1.8E-07 43.3 5.1 18 7-24 14-31 (266)
72 KOG3109 Haloacid dehalogenase- 96.4 0.0081 1.8E-07 43.1 4.8 38 57-95 99-136 (244)
73 PF09419 PGP_phosphatase: Mito 96.3 0.013 2.7E-07 40.2 5.6 21 2-22 36-56 (168)
74 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.3 0.01 2.2E-07 42.3 5.2 15 8-22 2-16 (249)
75 PRK09484 3-deoxy-D-manno-octul 96.3 0.022 4.7E-07 38.9 6.6 23 72-94 63-85 (183)
76 TIGR01544 HAD-SF-IE haloacid d 96.3 0.0068 1.5E-07 44.5 4.2 39 56-94 119-158 (277)
77 PF13419 HAD_2: Haloacid dehal 96.3 0.016 3.4E-07 37.4 5.6 41 55-95 74-115 (176)
78 TIGR01449 PGP_bact 2-phosphogl 96.2 0.01 2.2E-07 40.4 4.4 40 56-95 83-123 (213)
79 PTZ00174 phosphomannomutase; P 96.1 0.021 4.5E-07 40.5 5.9 18 6-23 4-21 (247)
80 PLN02423 phosphomannomutase 96.1 0.02 4.3E-07 40.8 5.8 21 3-23 3-23 (245)
81 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.013 2.8E-07 39.4 4.5 39 57-95 79-118 (201)
82 PRK13582 thrH phosphoserine ph 96.1 0.011 2.3E-07 40.2 4.1 40 56-95 66-105 (205)
83 TIGR01488 HAD-SF-IB Haloacid D 96.0 0.012 2.6E-07 38.9 4.1 40 56-95 71-111 (177)
84 TIGR02137 HSK-PSP phosphoserin 96.0 0.012 2.6E-07 41.0 4.2 39 57-95 67-105 (203)
85 TIGR02253 CTE7 HAD superfamily 96.0 0.012 2.6E-07 40.4 4.1 40 56-95 92-132 (221)
86 TIGR01460 HAD-SF-IIA Haloacid 95.9 0.013 2.8E-07 41.5 4.0 48 10-92 1-53 (236)
87 TIGR00685 T6PP trehalose-phosp 95.9 0.0088 1.9E-07 42.4 3.1 21 5-25 1-21 (244)
88 PRK12702 mannosyl-3-phosphogly 95.8 0.032 7E-07 41.5 5.9 16 8-23 2-17 (302)
89 PLN02887 hydrolase family prot 95.8 0.03 6.4E-07 45.0 6.1 19 4-22 305-323 (580)
90 PLN02954 phosphoserine phospha 95.7 0.023 4.9E-07 39.2 4.5 39 57-95 83-122 (224)
91 PRK13288 pyrophosphatase PpaX; 95.6 0.026 5.7E-07 38.7 4.7 40 56-95 80-120 (214)
92 COG0241 HisB Histidinol phosph 95.6 0.037 8.1E-07 38.3 5.2 53 5-82 3-56 (181)
93 PRK09449 dUMP phosphatase; Pro 95.6 0.025 5.4E-07 39.0 4.4 38 57-94 94-131 (224)
94 TIGR02244 HAD-IG-Ncltidse HAD 95.5 0.021 4.5E-07 43.2 4.2 43 53-95 179-223 (343)
95 PLN03243 haloacid dehalogenase 95.5 0.025 5.5E-07 40.8 4.4 40 56-95 107-147 (260)
96 PLN02770 haloacid dehalogenase 95.5 0.025 5.3E-07 40.2 4.2 40 56-95 106-146 (248)
97 TIGR01454 AHBA_synth_RP 3-amin 95.5 0.028 6E-07 38.3 4.4 40 56-95 73-113 (205)
98 COG2503 Predicted secreted aci 95.4 0.038 8.1E-07 40.3 5.0 71 4-82 76-147 (274)
99 PRK14502 bifunctional mannosyl 95.4 0.05 1.1E-06 44.6 6.2 19 5-23 414-432 (694)
100 TIGR03351 PhnX-like phosphonat 95.4 0.03 6.5E-07 38.5 4.3 39 57-95 86-125 (220)
101 TIGR01490 HAD-SF-IB-hyp1 HAD-s 95.3 0.036 7.7E-07 37.5 4.4 39 57-95 86-125 (202)
102 TIGR01428 HAD_type_II 2-haloal 95.2 0.035 7.7E-07 37.6 4.1 38 57-94 91-129 (198)
103 PRK13222 phosphoglycolate phos 95.2 0.039 8.4E-07 37.8 4.4 40 56-95 91-131 (226)
104 PTZ00445 p36-lilke protein; Pr 95.2 0.018 3.9E-07 41.0 2.7 65 3-86 39-104 (219)
105 PLN03017 trehalose-phosphatase 95.1 0.052 1.1E-06 41.4 5.2 17 3-19 107-123 (366)
106 TIGR02254 YjjG/YfnB HAD superf 95.1 0.048 1E-06 37.2 4.7 39 56-94 95-133 (224)
107 PRK06698 bifunctional 5'-methy 95.1 0.036 7.8E-07 42.8 4.2 40 56-95 328-368 (459)
108 TIGR01485 SPP_plant-cyano sucr 95.0 0.055 1.2E-06 38.2 4.9 14 7-20 1-14 (249)
109 PRK11590 hypothetical protein; 95.0 0.046 1E-06 37.8 4.2 38 57-94 94-133 (211)
110 PF03767 Acid_phosphat_B: HAD 94.9 0.021 4.7E-07 40.5 2.5 72 5-85 70-143 (229)
111 PLN02151 trehalose-phosphatase 94.9 0.064 1.4E-06 40.7 5.1 59 4-91 95-153 (354)
112 TIGR01489 DKMTPPase-SF 2,3-dik 94.9 0.049 1.1E-06 36.1 4.1 39 57-95 71-110 (188)
113 TIGR01509 HAD-SF-IA-v3 haloaci 94.8 0.054 1.2E-06 35.7 4.1 35 57-92 84-119 (183)
114 PRK11587 putative phosphatase; 94.7 0.061 1.3E-06 37.1 4.3 39 56-94 81-120 (218)
115 COG1877 OtsB Trehalose-6-phosp 94.7 0.085 1.8E-06 38.6 5.2 61 3-92 14-76 (266)
116 PRK14988 GMP/IMP nucleotidase; 94.7 0.06 1.3E-06 37.7 4.3 38 57-94 92-130 (224)
117 PLN02779 haloacid dehalogenase 94.6 0.061 1.3E-06 39.2 4.3 38 57-94 143-181 (286)
118 PRK13225 phosphoglycolate phos 94.5 0.07 1.5E-06 38.8 4.3 40 56-95 140-180 (273)
119 PLN02580 trehalose-phosphatase 94.4 0.11 2.3E-06 40.0 5.2 60 4-92 116-175 (384)
120 TIGR01545 YfhB_g-proteo haloac 94.4 0.075 1.6E-06 37.1 4.1 37 57-93 93-131 (210)
121 TIGR01993 Pyr-5-nucltdase pyri 94.4 0.06 1.3E-06 36.1 3.5 37 57-95 83-119 (184)
122 PRK10725 fructose-1-P/6-phosph 94.3 0.024 5.2E-07 37.9 1.5 38 57-95 87-124 (188)
123 TIGR01691 enolase-ppase 2,3-di 94.2 0.091 2E-06 37.2 4.3 40 55-94 92-132 (220)
124 COG4359 Uncharacterized conser 94.1 0.091 2E-06 37.0 4.0 39 56-94 71-110 (220)
125 COG0560 SerB Phosphoserine pho 94.1 0.1 2.2E-06 36.7 4.3 39 57-95 76-115 (212)
126 PLN02575 haloacid dehalogenase 94.1 0.094 2E-06 40.2 4.4 39 57-95 215-254 (381)
127 TIGR01549 HAD-SF-IA-v1 haloaci 94.0 0.14 3E-06 33.1 4.6 38 56-93 62-100 (154)
128 TIGR01548 HAD-SF-IA-hyp1 haloa 94.0 0.033 7.1E-07 37.9 1.7 37 59-95 107-144 (197)
129 PRK13226 phosphoglycolate phos 94.0 0.12 2.6E-06 36.1 4.6 40 56-95 93-133 (229)
130 PRK11587 putative phosphatase; 93.8 0.03 6.5E-07 38.7 1.2 17 7-23 3-19 (218)
131 PRK14501 putative bifunctional 93.8 0.13 2.8E-06 42.0 5.0 19 4-22 489-507 (726)
132 PRK10826 2-deoxyglucose-6-phos 93.7 0.04 8.6E-07 38.1 1.7 38 57-94 91-129 (222)
133 PRK10826 2-deoxyglucose-6-phos 93.6 0.12 2.6E-06 35.7 4.0 22 1-22 1-22 (222)
134 TIGR02009 PGMB-YQAB-SF beta-ph 93.6 0.12 2.5E-06 34.3 3.8 36 57-94 87-123 (185)
135 TIGR01680 Veg_Stor_Prot vegeta 93.6 0.63 1.4E-05 34.3 7.8 31 59-89 146-177 (275)
136 PHA02597 30.2 hypothetical pro 93.6 0.043 9.4E-07 37.2 1.7 37 56-92 72-108 (197)
137 PRK13223 phosphoglycolate phos 93.6 0.14 3.1E-06 36.9 4.4 38 57-94 100-138 (272)
138 PRK10563 6-phosphogluconate ph 93.5 0.11 2.3E-06 35.8 3.6 37 56-94 86-122 (221)
139 PRK13288 pyrophosphatase PpaX; 93.4 0.043 9.2E-07 37.7 1.3 17 7-23 3-19 (214)
140 PF12710 HAD: haloacid dehalog 93.3 0.17 3.6E-06 33.6 4.1 35 61-95 92-127 (192)
141 TIGR01993 Pyr-5-nucltdase pyri 93.2 0.04 8.7E-07 36.9 1.0 14 9-22 2-15 (184)
142 COG3769 Predicted hydrolase (H 93.2 0.37 8.1E-06 34.9 5.9 24 1-24 1-24 (274)
143 PLN03243 haloacid dehalogenase 93.1 0.06 1.3E-06 38.8 1.8 18 5-22 22-39 (260)
144 TIGR03351 PhnX-like phosphonat 93.1 0.055 1.2E-06 37.2 1.6 16 8-23 2-17 (220)
145 TIGR01511 ATPase-IB1_Cu copper 93.1 0.44 9.6E-06 37.9 6.8 40 56-95 403-443 (562)
146 COG3882 FkbH Predicted enzyme 93.0 0.052 1.1E-06 43.0 1.5 71 4-92 219-290 (574)
147 PRK13226 phosphoglycolate phos 92.9 0.053 1.2E-06 37.9 1.3 16 7-22 12-27 (229)
148 PRK11590 hypothetical protein; 92.9 0.066 1.4E-06 37.1 1.7 17 5-21 4-20 (211)
149 TIGR02252 DREG-2 REG-2-like, H 92.8 0.071 1.5E-06 36.1 1.8 37 57-94 104-141 (203)
150 TIGR02253 CTE7 HAD superfamily 92.8 0.053 1.2E-06 37.1 1.2 16 8-23 3-18 (221)
151 PRK13223 phosphoglycolate phos 92.8 0.052 1.1E-06 39.2 1.2 16 7-22 13-28 (272)
152 COG0546 Gph Predicted phosphat 92.8 0.23 5E-06 34.5 4.4 39 57-95 88-127 (220)
153 PRK13222 phosphoglycolate phos 92.4 0.089 1.9E-06 36.0 1.8 21 1-22 1-21 (226)
154 PF00702 Hydrolase: haloacid d 92.3 0.64 1.4E-05 31.1 6.0 42 54-95 123-165 (215)
155 COG0546 Gph Predicted phosphat 92.3 0.081 1.7E-06 36.8 1.6 18 6-23 3-20 (220)
156 PRK13225 phosphoglycolate phos 92.2 0.061 1.3E-06 39.1 0.9 17 6-22 61-77 (273)
157 TIGR02009 PGMB-YQAB-SF beta-ph 92.2 0.065 1.4E-06 35.5 1.0 16 8-23 2-17 (185)
158 TIGR01548 HAD-SF-IA-hyp1 haloa 92.2 0.31 6.8E-06 33.0 4.3 15 9-23 2-16 (197)
159 TIGR01549 HAD-SF-IA-v1 haloaci 92.1 0.062 1.4E-06 34.8 0.8 14 9-22 1-14 (154)
160 PRK14988 GMP/IMP nucleotidase; 92.1 0.078 1.7E-06 37.1 1.3 16 6-21 9-24 (224)
161 PLN02770 haloacid dehalogenase 92.0 0.07 1.5E-06 37.8 1.0 16 8-23 23-38 (248)
162 PLN02779 haloacid dehalogenase 91.8 0.12 2.6E-06 37.6 2.0 17 6-22 39-55 (286)
163 TIGR01990 bPGM beta-phosphoglu 91.7 0.07 1.5E-06 35.4 0.7 36 57-94 86-122 (185)
164 TIGR01454 AHBA_synth_RP 3-amin 91.7 0.059 1.3E-06 36.7 0.3 13 10-22 1-13 (205)
165 COG1011 Predicted hydrolase (H 91.7 0.34 7.3E-06 33.1 4.1 38 57-94 98-135 (229)
166 TIGR02726 phenyl_P_delta pheny 91.6 1.7 3.7E-05 29.5 7.4 65 7-95 7-72 (169)
167 TIGR01509 HAD-SF-IA-v3 haloaci 91.5 0.087 1.9E-06 34.7 1.0 15 9-23 1-15 (183)
168 PRK10748 flavin mononucleotide 91.5 0.092 2E-06 36.9 1.2 29 57-85 112-140 (238)
169 TIGR01449 PGP_bact 2-phosphogl 91.2 0.072 1.6E-06 36.2 0.4 13 10-22 1-13 (213)
170 TIGR02254 YjjG/YfnB HAD superf 91.1 0.11 2.4E-06 35.4 1.1 16 8-23 2-17 (224)
171 TIGR01428 HAD_type_II 2-haloal 91.0 0.11 2.3E-06 35.2 1.0 15 8-22 2-16 (198)
172 TIGR01493 HAD-SF-IA-v2 Haloaci 91.0 0.1 2.2E-06 34.4 0.9 33 56-94 88-120 (175)
173 PF13419 HAD_2: Haloacid dehal 91.0 0.1 2.2E-06 33.5 0.9 14 10-23 1-14 (176)
174 TIGR02247 HAD-1A3-hyp Epoxide 90.9 0.14 2.9E-06 35.0 1.5 31 56-86 92-123 (211)
175 PLN02940 riboflavin kinase 90.9 0.35 7.6E-06 36.8 3.8 36 57-92 92-128 (382)
176 TIGR02471 sucr_syn_bact_C sucr 90.8 0.42 9.1E-06 33.3 4.0 62 10-84 2-66 (236)
177 PRK10725 fructose-1-P/6-phosph 90.6 0.44 9.5E-06 31.7 3.7 18 6-23 4-21 (188)
178 TIGR01525 ATPase-IB_hvy heavy 90.5 0.51 1.1E-05 37.4 4.6 42 54-95 380-423 (556)
179 TIGR02252 DREG-2 REG-2-like, H 90.5 0.65 1.4E-05 31.4 4.6 14 9-22 2-15 (203)
180 TIGR01491 HAD-SF-IB-PSPlk HAD- 90.5 0.16 3.5E-06 34.0 1.5 15 7-21 4-18 (201)
181 TIGR01489 DKMTPPase-SF 2,3-dik 90.3 0.15 3.3E-06 33.7 1.3 17 7-23 1-17 (188)
182 PRK09449 dUMP phosphatase; Pro 90.2 0.13 2.9E-06 35.3 1.0 15 7-21 3-17 (224)
183 PF08235 LNS2: LNS2 (Lipin/Ned 89.4 1.1 2.4E-05 30.4 4.9 59 9-90 1-60 (157)
184 PRK10563 6-phosphogluconate ph 89.2 0.19 4.1E-06 34.5 1.1 17 7-23 4-20 (221)
185 PLN02954 phosphoserine phospha 89.1 0.22 4.8E-06 34.2 1.4 18 6-23 11-28 (224)
186 PRK13582 thrH phosphoserine ph 88.8 0.22 4.7E-06 33.7 1.2 14 8-21 2-15 (205)
187 PHA02597 30.2 hypothetical pro 88.8 0.66 1.4E-05 31.3 3.6 16 7-22 2-17 (197)
188 COG0637 Predicted phosphatase/ 88.7 0.19 4.2E-06 35.2 0.9 39 56-94 84-123 (221)
189 PRK09456 ?-D-glucose-1-phospha 88.6 0.81 1.7E-05 31.1 3.9 35 56-90 82-117 (199)
190 TIGR01512 ATPase-IB2_Cd heavy 88.6 0.77 1.7E-05 36.3 4.2 41 55-95 359-401 (536)
191 PF05116 S6PP: Sucrose-6F-phos 88.5 1 2.3E-05 32.1 4.6 13 7-19 2-14 (247)
192 TIGR02247 HAD-1A3-hyp Epoxide 88.5 0.54 1.2E-05 32.0 3.0 15 8-22 3-17 (211)
193 PLN02575 haloacid dehalogenase 88.4 0.29 6.3E-06 37.5 1.7 18 6-23 130-147 (381)
194 TIGR01990 bPGM beta-phosphoglu 88.4 0.86 1.9E-05 30.1 3.9 15 9-23 1-15 (185)
195 PLN02811 hydrolase 88.3 0.72 1.6E-05 31.8 3.6 34 56-89 76-110 (220)
196 PRK06698 bifunctional 5'-methy 88.3 0.22 4.7E-06 38.5 1.0 16 8-23 242-257 (459)
197 COG0637 Predicted phosphatase/ 87.2 1 2.2E-05 31.5 3.9 15 8-22 3-17 (221)
198 PLN03063 alpha,alpha-trehalose 87.0 1.6 3.4E-05 36.4 5.3 62 4-91 504-567 (797)
199 PLN02919 haloacid dehalogenase 87.0 1.2 2.5E-05 38.4 4.6 37 59-95 162-199 (1057)
200 PRK09552 mtnX 2-hydroxy-3-keto 85.9 0.43 9.2E-06 33.0 1.3 17 7-23 3-19 (219)
201 COG0560 SerB Phosphoserine pho 85.9 0.44 9.5E-06 33.5 1.4 16 5-20 3-18 (212)
202 KOG3120 Predicted haloacid deh 85.8 1.4 3.1E-05 31.9 4.0 40 56-95 82-123 (256)
203 PF11019 DUF2608: Protein of u 85.7 4.5 9.8E-05 29.2 6.5 89 6-94 19-118 (252)
204 TIGR01493 HAD-SF-IA-v2 Haloaci 85.6 0.47 1E-05 31.2 1.4 14 10-23 2-15 (175)
205 COG1011 Predicted hydrolase (H 85.6 0.48 1E-05 32.3 1.4 18 6-23 3-20 (229)
206 TIGR02137 HSK-PSP phosphoserin 85.3 0.38 8.3E-06 33.4 0.9 12 10-21 4-15 (203)
207 PLN02940 riboflavin kinase 85.1 0.49 1.1E-05 36.0 1.4 16 7-22 11-26 (382)
208 PLN02382 probable sucrose-phos 84.8 0.56 1.2E-05 36.1 1.6 19 3-21 5-23 (413)
209 PF05822 UMPH-1: Pyrimidine 5' 84.8 1.5 3.3E-05 31.8 3.7 38 56-93 88-126 (246)
210 PF02358 Trehalose_PPase: Treh 84.5 1.3 2.8E-05 31.0 3.2 50 11-89 1-52 (235)
211 PRK09456 ?-D-glucose-1-phospha 83.8 0.58 1.3E-05 31.8 1.2 14 9-22 2-15 (199)
212 KOG2134 Polynucleotide kinase 83.6 2 4.3E-05 33.4 4.0 58 4-83 72-130 (422)
213 PF06888 Put_Phosphatase: Puta 83.0 2.1 4.6E-05 30.7 3.9 38 56-93 69-109 (234)
214 PLN02205 alpha,alpha-trehalose 82.6 1.3 2.9E-05 37.2 3.1 19 4-22 593-611 (854)
215 TIGR01545 YfhB_g-proteo haloac 82.2 0.72 1.6E-05 32.1 1.2 18 6-23 4-21 (210)
216 PRK10748 flavin mononucleotide 82.2 1.3 2.9E-05 31.0 2.6 15 8-22 11-25 (238)
217 PLN03064 alpha,alpha-trehalose 82.2 3.8 8.3E-05 35.0 5.6 70 4-93 588-659 (934)
218 KOG1615 Phosphoserine phosphat 81.3 3.7 7.9E-05 29.3 4.4 39 57-95 87-126 (227)
219 PF05761 5_nucleotid: 5' nucle 79.5 3.7 8.1E-05 32.2 4.4 42 53-94 178-220 (448)
220 COG4502 5'(3')-deoxyribonucleo 77.9 4.3 9.2E-05 27.6 3.7 27 57-83 67-93 (180)
221 PRK10671 copA copper exporting 76.8 4.6 9.9E-05 33.7 4.4 38 58-95 650-688 (834)
222 PF06941 NT5C: 5' nucleotidase 75.6 1.4 3E-05 29.9 1.0 29 57-85 72-101 (191)
223 PLN02919 haloacid dehalogenase 73.8 1.9 4.1E-05 37.1 1.5 16 8-23 76-91 (1057)
224 TIGR01658 EYA-cons_domain eyes 72.8 1.4 3.1E-05 32.3 0.5 12 8-19 3-14 (274)
225 PRK11033 zntA zinc/cadmium/mer 71.7 7.6 0.00017 32.1 4.5 42 54-95 564-606 (741)
226 PF13701 DDE_Tnp_1_4: Transpos 71.0 8.5 0.00018 30.1 4.4 63 5-70 137-207 (448)
227 cd02974 AhpF_NTD_N Alkyl hydro 67.3 9.5 0.00021 23.4 3.3 30 61-91 8-37 (94)
228 PLN02177 glycerol-3-phosphate 64.7 3.4 7.5E-05 32.8 1.1 32 59-93 111-142 (497)
229 COG4030 Uncharacterized protei 63.2 11 0.00025 27.7 3.4 40 56-95 81-120 (315)
230 KOG2914 Predicted haloacid-hal 63.0 11 0.00024 26.8 3.4 40 54-93 88-128 (222)
231 COG3700 AphA Acid phosphatase 60.8 7.7 0.00017 27.5 2.2 22 2-23 58-79 (237)
232 PHA03050 glutaredoxin; Provisi 60.0 17 0.00037 22.7 3.6 32 64-95 3-34 (108)
233 TIGR01497 kdpB K+-transporting 58.6 20 0.00043 29.7 4.5 38 58-95 446-484 (675)
234 PLN02499 glycerol-3-phosphate 56.8 7.7 0.00017 31.0 1.8 19 75-93 110-128 (498)
235 cd06535 CIDE_N_CAD CIDE_N doma 56.1 15 0.00032 22.1 2.6 16 4-19 37-52 (77)
236 PF09107 SelB-wing_3: Elongati 54.7 7.6 0.00016 21.2 1.1 16 81-96 21-36 (50)
237 TIGR03278 methan_mark_10 putat 54.3 19 0.00042 27.9 3.6 38 59-96 87-131 (404)
238 PF09119 SicP-binding: SicP bi 54.1 16 0.00034 22.2 2.5 29 59-95 36-64 (81)
239 TIGR02826 RNR_activ_nrdG3 anae 54.0 30 0.00066 22.8 4.1 38 58-95 72-111 (147)
240 cd01615 CIDE_N CIDE_N domain, 53.7 14 0.0003 22.2 2.2 17 5-21 38-54 (78)
241 cd08568 GDPD_TmGDE_like Glycer 53.5 30 0.00065 23.9 4.3 32 64-95 184-216 (226)
242 PF06941 NT5C: 5' nucleotidase 53.4 14 0.0003 24.9 2.5 17 6-22 1-17 (191)
243 TIGR01522 ATPase-IIA2_Ca golgi 53.2 26 0.00055 29.7 4.4 38 58-95 528-566 (884)
244 cd04907 ACT_ThrD-I_2 Second of 52.8 15 0.00033 21.8 2.3 23 56-78 7-30 (81)
245 smart00266 CAD Domains present 52.5 15 0.00033 21.9 2.2 18 5-22 36-53 (74)
246 COG5083 SMP2 Uncharacterized p 51.9 9.8 0.00021 30.4 1.7 21 2-22 370-390 (580)
247 PF05320 Pox_RNA_Pol_19: Poxvi 51.2 3.2 6.9E-05 28.3 -0.9 18 2-19 95-113 (167)
248 PF02017 CIDE-N: CIDE-N domain 51.0 13 0.00027 22.4 1.7 17 5-21 38-54 (78)
249 cd06539 CIDE_N_A CIDE_N domain 49.8 18 0.00038 21.8 2.2 19 4-22 37-55 (78)
250 KOG4549 Magnesium-dependent ph 48.2 81 0.0018 21.1 7.5 78 5-94 3-82 (144)
251 PF04312 DUF460: Protein of un 47.9 18 0.00039 24.1 2.2 65 11-86 47-111 (138)
252 TIGR01124 ilvA_2Cterm threonin 46.7 17 0.00037 28.8 2.3 27 54-80 423-450 (499)
253 PRK01122 potassium-transportin 46.1 41 0.00089 27.9 4.5 38 58-95 445-483 (679)
254 cd06536 CIDE_N_ICAD CIDE_N dom 44.8 21 0.00046 21.6 2.1 17 6-22 41-57 (80)
255 PF08030 NAD_binding_6: Ferric 44.4 54 0.0012 20.9 4.1 37 56-92 114-153 (156)
256 COG4850 Uncharacterized conser 44.0 1.1E+02 0.0024 23.6 6.1 75 3-94 157-234 (373)
257 PF07615 Ykof: YKOF-related Fa 43.7 25 0.00053 21.0 2.2 22 74-95 4-25 (81)
258 COG1880 CdhB CO dehydrogenase/ 43.6 30 0.00065 23.8 2.8 22 73-94 108-129 (170)
259 KOG3107 Predicted haloacid deh 43.6 9.8 0.00021 29.8 0.5 14 8-21 198-211 (468)
260 KOG3189 Phosphomannomutase [Li 43.0 45 0.00098 24.1 3.7 19 4-22 8-26 (252)
261 KOG0693 Myo-inositol-1-phospha 42.7 12 0.00026 29.2 0.9 33 58-90 208-240 (512)
262 PRK14010 potassium-transportin 41.9 50 0.0011 27.4 4.4 38 58-95 441-479 (673)
263 cd06537 CIDE_N_B CIDE_N domain 41.4 25 0.00054 21.3 2.0 17 6-22 38-54 (81)
264 KOG3128 Uncharacterized conser 41.3 45 0.00098 24.8 3.6 38 54-91 134-172 (298)
265 PHA01818 hypothetical protein 41.3 38 0.00083 26.1 3.3 31 66-96 236-270 (458)
266 TIGR01116 ATPase-IIA1_Ca sarco 41.2 50 0.0011 28.2 4.4 38 58-95 537-575 (917)
267 TIGR01281 DPOR_bchL light-inde 40.9 13 0.00029 26.2 0.9 15 3-17 25-39 (268)
268 TIGR02109 PQQ_syn_pqqE coenzym 40.9 60 0.0013 24.0 4.4 34 59-92 66-103 (358)
269 TIGR01647 ATPase-IIIA_H plasma 39.6 55 0.0012 27.3 4.3 38 58-95 442-480 (755)
270 cd06538 CIDE_N_FSP27 CIDE_N do 39.6 23 0.00051 21.3 1.7 16 7-22 39-54 (79)
271 cd03769 SR_IS607_transposase_l 38.3 38 0.00082 21.8 2.6 24 58-81 46-70 (134)
272 PRK09224 threonine dehydratase 38.0 31 0.00067 27.3 2.6 33 54-86 427-462 (504)
273 PRK11145 pflA pyruvate formate 37.9 71 0.0015 22.3 4.2 37 59-95 83-125 (246)
274 PLN02588 glycerol-3-phosphate 36.5 21 0.00045 28.8 1.4 17 7-23 50-66 (525)
275 PRK10824 glutaredoxin-4; Provi 36.1 68 0.0015 20.4 3.5 18 65-82 6-23 (115)
276 PF12641 Flavodoxin_3: Flavodo 35.8 79 0.0017 21.2 4.0 36 57-93 52-91 (160)
277 smart00857 Resolvase Resolvase 35.4 47 0.001 21.0 2.7 25 59-83 50-75 (148)
278 PRK05301 pyrroloquinoline quin 35.0 77 0.0017 23.7 4.2 34 59-92 75-112 (378)
279 PF00239 Resolvase: Resolvase, 34.9 47 0.001 20.7 2.7 21 59-80 46-66 (141)
280 PRK15122 magnesium-transportin 34.7 75 0.0016 27.2 4.4 38 58-95 550-588 (903)
281 PF13394 Fer4_14: 4Fe-4S singl 34.4 23 0.0005 21.6 1.1 30 60-89 64-96 (119)
282 PRK13762 tRNA-modifying enzyme 34.0 59 0.0013 24.2 3.4 26 59-84 143-169 (322)
283 COG1117 PstB ABC-type phosphat 33.8 67 0.0014 23.5 3.5 26 63-88 188-213 (253)
284 TIGR01524 ATPase-IIIB_Mg magne 33.2 84 0.0018 26.7 4.5 38 58-95 515-553 (867)
285 PF02196 RBD: Raf-like Ras-bin 32.8 80 0.0017 18.2 3.2 31 52-82 10-47 (71)
286 PRK13185 chlL protochlorophyll 32.2 22 0.00047 25.2 0.8 14 3-16 27-40 (270)
287 COG2217 ZntA Cation transport 32.0 89 0.0019 26.2 4.4 38 58-95 537-575 (713)
288 PF08559 Cut8_C: Cut8 six-heli 31.9 8.1 0.00018 25.7 -1.3 20 55-74 32-51 (143)
289 cd02514 GT13_GLCNAC-TI GT13_GL 31.8 1.2E+02 0.0026 22.9 4.8 37 55-91 6-49 (334)
290 cd00338 Ser_Recombinase Serine 31.8 61 0.0013 20.1 2.8 26 57-82 48-74 (137)
291 cd02117 NifH_like This family 31.8 23 0.00049 24.2 0.8 13 3-15 25-37 (212)
292 COG0731 Fe-S oxidoreductases [ 31.8 1E+02 0.0022 23.1 4.2 33 59-94 93-127 (296)
293 PRK10517 magnesium-transportin 31.3 95 0.0021 26.6 4.5 38 58-95 550-588 (902)
294 TIGR02495 NrdG2 anaerobic ribo 30.3 1.3E+02 0.0027 20.0 4.3 33 59-91 75-109 (191)
295 PHA02122 hypothetical protein 30.3 34 0.00075 19.4 1.2 13 12-24 27-39 (65)
296 KOG0039 Ferric reductase, NADH 30.2 93 0.002 25.6 4.2 34 60-93 591-627 (646)
297 COG1778 Low specificity phosph 29.9 35 0.00076 23.5 1.5 17 7-23 8-24 (170)
298 TIGR01287 nifH nitrogenase iro 29.6 26 0.00056 24.9 0.9 14 2-15 24-37 (275)
299 PF10035 DUF2179: Uncharacteri 29.4 80 0.0017 16.8 2.7 14 84-97 29-42 (55)
300 PRK10037 cell division protein 28.7 28 0.00062 24.4 0.9 15 3-17 27-41 (250)
301 cd03768 SR_ResInv Serine Recom 28.5 61 0.0013 19.9 2.4 23 58-80 40-62 (126)
302 cd02032 Bchl_like This family 27.7 29 0.00064 24.5 0.8 14 3-16 25-38 (267)
303 COG1961 PinR Site-specific rec 27.7 65 0.0014 22.2 2.6 21 60-80 50-71 (222)
304 TIGR03365 Bsubt_queE 7-cyano-7 27.3 64 0.0014 22.8 2.5 28 59-86 85-113 (238)
305 PRK10076 pyruvate formate lyas 27.1 1.4E+02 0.0031 20.9 4.2 36 60-95 53-91 (213)
306 TIGR01517 ATPase-IIB_Ca plasma 26.9 1.2E+02 0.0027 25.9 4.5 38 58-95 579-617 (941)
307 PRK13230 nitrogenase reductase 26.6 30 0.00066 24.6 0.8 15 3-17 26-40 (279)
308 PRK00164 moaA molybdenum cofac 26.0 1.3E+02 0.0027 22.1 4.0 33 59-91 78-115 (331)
309 cd03770 SR_TndX_transposase Se 25.5 88 0.0019 20.0 2.8 24 58-81 52-76 (140)
310 TIGR01494 ATPase_P-type ATPase 25.3 1.4E+02 0.0031 23.2 4.3 37 58-94 347-384 (499)
311 PF05440 MtrB: Tetrahydrometha 25.2 57 0.0012 20.4 1.7 15 83-97 42-56 (97)
312 PRK13235 nifH nitrogenase redu 24.8 35 0.00077 24.2 0.8 15 3-17 26-40 (274)
313 KOG0832 Mitochondrial/chloropl 24.6 60 0.0013 23.7 1.9 65 4-84 77-150 (251)
314 COG4555 NatA ABC-type Na+ tran 24.6 1.2E+02 0.0027 22.0 3.5 41 53-93 162-202 (245)
315 smart00455 RBD Raf-like Ras-bi 24.5 96 0.0021 17.8 2.5 32 52-83 9-47 (70)
316 cd02040 NifH NifH gene encodes 24.5 37 0.00081 23.7 0.9 14 3-16 26-39 (270)
317 PF08821 CGGC: CGGC domain; I 24.3 73 0.0016 20.1 2.1 23 59-81 83-107 (107)
318 PF01976 DUF116: Protein of un 24.2 1.1E+02 0.0024 20.5 3.2 31 67-97 78-108 (158)
319 cd03029 GRX_hybridPRX5 Glutare 23.9 92 0.002 17.2 2.4 21 75-95 2-22 (72)
320 PF03009 GDPD: Glycerophosphor 23.6 1.3E+02 0.0029 20.2 3.5 29 65-93 213-244 (256)
321 TIGR01106 ATPase-IIC_X-K sodiu 23.5 1.4E+02 0.0031 25.7 4.3 37 58-94 568-605 (997)
322 TIGR02666 moaA molybdenum cofa 23.1 1.8E+02 0.0039 21.3 4.3 33 59-91 72-109 (334)
323 PF13184 KH_5: NusA-like KH do 23.1 1.2E+02 0.0025 17.5 2.7 29 63-91 30-59 (69)
324 TIGR01523 ATPase-IID_K-Na pota 22.8 1.6E+02 0.0035 25.7 4.5 38 58-95 646-684 (1053)
325 PF02552 CO_dh: CO dehydrogena 22.5 1.1E+02 0.0024 20.9 2.8 33 62-94 83-125 (167)
326 PRK13361 molybdenum cofactor b 22.4 1.8E+02 0.0039 21.4 4.2 33 59-91 74-111 (329)
327 TIGR03143 AhpF_homolog putativ 22.4 1.2E+02 0.0026 24.1 3.5 33 62-94 356-388 (555)
328 cd08612 GDPD_GDE4 Glycerophosp 22.3 1.8E+02 0.0038 21.2 4.1 29 64-92 251-280 (300)
329 cd08555 PI-PLCc_GDPD_SF Cataly 22.3 2E+02 0.0043 19.1 4.1 29 64-92 139-169 (179)
330 TIGR01652 ATPase-Plipid phosph 21.8 1.2E+02 0.0025 26.4 3.4 35 58-92 631-666 (1057)
331 TIGR02190 GlrX-dom Glutaredoxi 21.8 84 0.0018 17.9 1.9 15 63-77 24-38 (79)
332 TIGR00333 nrdI ribonucleoside- 21.7 2.1E+02 0.0045 18.5 3.9 26 61-87 52-77 (125)
333 PF13728 TraF: F plasmid trans 21.5 1.6E+02 0.0034 20.6 3.6 29 63-91 111-139 (215)
334 cd08609 GDPD_GDE3 Glycerophosp 21.4 1.8E+02 0.0039 21.7 4.0 29 64-92 235-264 (315)
335 cd02955 SSP411 TRX domain, SSP 21.2 1.3E+02 0.0028 19.2 2.9 15 59-73 107-121 (124)
336 TIGR03470 HpnH hopanoid biosyn 21.1 1E+02 0.0023 22.7 2.7 26 59-84 85-111 (318)
337 PRK00103 rRNA large subunit me 20.9 2.1E+02 0.0046 19.1 4.0 38 59-96 16-66 (157)
338 CHL00072 chlL photochlorophyll 20.8 47 0.001 24.2 0.8 15 3-17 25-39 (290)
339 cd02036 MinD Bacterial cell di 20.7 42 0.0009 21.6 0.5 15 3-17 25-39 (179)
340 cd08585 GDPD_like_3 Glyceropho 20.4 2.1E+02 0.0045 20.1 4.0 29 65-93 199-229 (237)
341 cd03767 SR_Res_par Serine reco 20.3 1.2E+02 0.0026 19.6 2.6 23 58-80 45-67 (146)
342 TIGR03371 cellulose_yhjQ cellu 20.3 53 0.0011 22.5 1.0 13 4-16 28-40 (246)
343 PRK00965 tetrahydromethanopter 20.2 82 0.0018 19.7 1.7 15 83-97 43-57 (96)
No 1
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.95 E-value=3.1e-27 Score=159.27 Aligned_cols=95 Identities=43% Similarity=0.681 Sum_probs=76.3
Q ss_pred CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhC--CCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEE
Q 040601 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLG--SSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLC 79 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~ 79 (97)
|++++|++||||||||||||+..+..+.+ +.+..... +...+...|.+++..+++++|||+.+||+++++.|+++||
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~ 79 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSEW-EKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVY 79 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccchh-hhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEE
Confidence 68999999999999999999988754443 22211110 1112345566667889999999999999999999999999
Q ss_pred eCCchHHHHHHHHhhCCC
Q 040601 80 TTGIRSYAVMMAKLLDLK 97 (97)
Q Consensus 80 T~~~~~YA~~v~~~LDP~ 97 (97)
|++.++||++|++.|||+
T Consensus 80 T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 80 TMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred eCCcHHHHHHHHHHhCcC
Confidence 999999999999999995
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.92 E-value=3.9e-25 Score=149.43 Aligned_cols=81 Identities=31% Similarity=0.351 Sum_probs=63.6
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHH
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY 86 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~Y 86 (97)
|++||||||||||||+..+..... .+ .. ...+..+...+||++|||+.+||+++++.||++|||++++.|
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~--~~-~~-------~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~y 70 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDA--DF-KV-------PVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEY 70 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCC--ce-EE-------EEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHH
Confidence 689999999999999876521111 00 00 111122356899999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 040601 87 AVMMAKLLDLK 97 (97)
Q Consensus 87 A~~v~~~LDP~ 97 (97)
|++|++.|||.
T Consensus 71 A~~il~~ldp~ 81 (162)
T TIGR02251 71 ADPVLDILDRG 81 (162)
T ss_pred HHHHHHHHCcC
Confidence 99999999984
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.88 E-value=1.8e-23 Score=150.71 Aligned_cols=83 Identities=30% Similarity=0.355 Sum_probs=66.6
Q ss_pred cCCCCceEEEeCCCeeeeeec--cCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEe
Q 040601 3 YRQKKLHLVLDLDHTLLHAVD--IDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T 80 (97)
-.++|++||||||||||||+. .+...+ ++.. ++.+......+||.+|||+++||.+++++||+++||
T Consensus 85 ~~~~kk~lVLDLDeTLvHss~~~~~~~~~----d~~~-------~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FT 153 (262)
T KOG1605|consen 85 ATVGRKTLVLDLDETLVHSSLNLKPIVNA----DFTV-------PVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFT 153 (262)
T ss_pred ccCCCceEEEeCCCcccccccccCCCCCc----ceee-------eeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHH
Confidence 357899999999999999994 331111 1111 222333357899999999999999999999999999
Q ss_pred CCchHHHHHHHHhhCC
Q 040601 81 TGIRSYAVMMAKLLDL 96 (97)
Q Consensus 81 ~~~~~YA~~v~~~LDP 96 (97)
|+.+.||++|+++|||
T Consensus 154 As~~~Ya~~v~D~LD~ 169 (262)
T KOG1605|consen 154 ASLEVYADPLLDILDP 169 (262)
T ss_pred hhhHHHHHHHHHHccC
Confidence 9999999999999998
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.88 E-value=3e-22 Score=133.58 Aligned_cols=75 Identities=36% Similarity=0.437 Sum_probs=57.3
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHHH
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYA 87 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA 87 (97)
++|||||||||||+...+..+.. ... .. ....+++++|||+++||+++++.||++|||++++.||
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~-------------~~~-~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya 65 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYD-------------FKI-ID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYA 65 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-S-------------EEE-ET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcc-------------cce-ec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhh
Confidence 68999999999999876432110 000 01 2467899999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 040601 88 VMMAKLLDLK 97 (97)
Q Consensus 88 ~~v~~~LDP~ 97 (97)
++|++.|||+
T Consensus 66 ~~v~~~ldp~ 75 (159)
T PF03031_consen 66 EPVLDALDPN 75 (159)
T ss_dssp HHHHHHHTTT
T ss_pred hHHHHhhhhh
Confidence 9999999993
No 5
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.87 E-value=3.5e-22 Score=138.99 Aligned_cols=67 Identities=28% Similarity=0.360 Sum_probs=58.0
Q ss_pred cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCC
Q 040601 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTG 82 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~ 82 (97)
-+.+|++|||||||||||+.... ...++.+|||+++||+.++++|||+||||+
T Consensus 17 ~~~~kklLVLDLDeTLvh~~~~~---------------------------~~~~~~kRP~l~eFL~~~~~~feIvVwTAa 69 (195)
T TIGR02245 17 PREGKKLLVLDIDYTLFDHRSPA---------------------------ETGEELMRPYLHEFLTSAYEDYDIVIWSAT 69 (195)
T ss_pred CCCCCcEEEEeCCCceEcccccC---------------------------CCceEEeCCCHHHHHHHHHhCCEEEEEecC
Confidence 46789999999999999984311 123678999999999999999999999999
Q ss_pred chHHHHHHHHhhCC
Q 040601 83 IRSYAVMMAKLLDL 96 (97)
Q Consensus 83 ~~~YA~~v~~~LDP 96 (97)
++.||+++++.|++
T Consensus 70 ~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 70 SMKWIEIKMTELGV 83 (195)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998864
No 6
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=4.5e-20 Score=145.40 Aligned_cols=94 Identities=48% Similarity=0.780 Sum_probs=80.4
Q ss_pred cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCC-CCCCceeeec----ceEEEEEecchHHHHHHHHhhcceEE
Q 040601 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSS-SSDGDLFKMA----GELFLVKLRPYIRKFLKEASKMYEIY 77 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~RP~~~~FL~~ls~~~ei~ 77 (97)
++++++.||+|||+||+|+...+.+..+ +++++.+..+ .++..++.++ ...++|++|||+.+||+.+++.||++
T Consensus 142 ~~~~~L~lv~Dld~tllh~~~~~~l~e~-~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemh 220 (635)
T KOG0323|consen 142 LNRKKLHLVLDLDHTLLHTILKSDLSET-EKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMH 220 (635)
T ss_pred HhhhcceeehhhhhHHHHhhccchhhhh-hhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeE
Confidence 5667789999999999999998887777 6777776554 3445555554 36899999999999999999999999
Q ss_pred EEeCCchHHHHHHHHhhCCC
Q 040601 78 LCTTGIRSYAVMMAKLLDLK 97 (97)
Q Consensus 78 i~T~~~~~YA~~v~~~LDP~ 97 (97)
|||.|.+.||..|+++|||+
T Consensus 221 VyTmg~R~YA~~i~~liDP~ 240 (635)
T KOG0323|consen 221 VYTMGTRDYALEIAKLIDPE 240 (635)
T ss_pred EEeccchHHHHHHHHHhCCC
Confidence 99999999999999999996
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.78 E-value=7.1e-19 Score=116.93 Aligned_cols=83 Identities=36% Similarity=0.430 Sum_probs=63.0
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchH
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRS 85 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~ 85 (97)
||++|||||||||||++..+.. ++ .+ +...-...+......+++.+|||+.+||+++.+.|+++|||++.+.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~ 72 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-EW-TN------RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRM 72 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-CC-Cc------cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHH
Confidence 6899999999999999753221 11 00 0000011122335688999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 040601 86 YAVMMAKLLDL 96 (97)
Q Consensus 86 YA~~v~~~LDP 96 (97)
||+.+++.+|+
T Consensus 73 ~~~~il~~l~~ 83 (148)
T smart00577 73 YADPVLDLLDP 83 (148)
T ss_pred HHHHHHHHhCc
Confidence 99999999987
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.43 E-value=1.7e-13 Score=102.33 Aligned_cols=68 Identities=28% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI 83 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~ 83 (97)
.+.+.||||+|.++|||..+.-. ..+.+++|||++.||..++++|||+|||+..
T Consensus 186 ~Qp~yTLVleledvLVhpdws~~--------------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~ 239 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWSYK--------------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQ 239 (393)
T ss_pred cCCCceEEEEeeeeEeccchhhh--------------------------cCceeccCchHHHHHHhhcccceEEEEecCC
Confidence 36789999999999999977421 1247889999999999999999999999999
Q ss_pred hHHHHHHHHhhCCC
Q 040601 84 RSYAVMMAKLLDLK 97 (97)
Q Consensus 84 ~~YA~~v~~~LDP~ 97 (97)
.-||.++++.|||+
T Consensus 240 gmt~~pl~d~lDP~ 253 (393)
T KOG2832|consen 240 GMTVFPLLDALDPK 253 (393)
T ss_pred ccchhhhHhhcCCc
Confidence 99999999999995
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.41 E-value=3.5e-13 Score=101.90 Aligned_cols=83 Identities=30% Similarity=0.366 Sum_probs=65.0
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI 83 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~ 83 (97)
.+.+.+|++|||+||+||+.... .. ++ +... .........+||..|||+.+|+..+++.|++++||++.
T Consensus 209 ~~~~k~L~l~lde~l~~S~~~~~-~~--~d-f~~~-------~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~ 277 (390)
T COG5190 209 TSPKKTLVLDLDETLVHSSFRYI-TL--LD-FLVK-------VEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASV 277 (390)
T ss_pred CCCccccccCCCccceeeccccc-cc--cc-hhhc-------cccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecch
Confidence 35689999999999999987531 11 11 2211 11111236889999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCC
Q 040601 84 RSYAVMMAKLLDLK 97 (97)
Q Consensus 84 ~~YA~~v~~~LDP~ 97 (97)
+.||++|+++||++
T Consensus 278 ~~y~~~v~d~l~~~ 291 (390)
T COG5190 278 KRYADPVLDILDSD 291 (390)
T ss_pred hhhcchHHHhcccc
Confidence 99999999999974
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.76 E-value=6.4e-09 Score=78.95 Aligned_cols=94 Identities=31% Similarity=0.382 Sum_probs=69.4
Q ss_pred CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhh-hCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEe
Q 040601 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMK-LGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T 80 (97)
|-.++++.||.|+|.|.+||...+..+.. .+.... ...+..+ ..+....+.++++.||++..|+...++.||+.++|
T Consensus 21 l~q~~~~~l~~~~~~~~~h~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~ 98 (390)
T COG5190 21 LRQDKKLILVVDLDQTIIHTTVDPNDPNN-VNQSLERTLKSVND-RDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYT 98 (390)
T ss_pred hhcCcccccccccccceecccccCCCCCc-hhhhhhccccchhc-cccccccccceeeecccccchhhhhchhcceeeEe
Confidence 34678899999999999999987632222 111000 0001111 11222257899999999999999999999999999
Q ss_pred CCchHHHHHHHHhhCCC
Q 040601 81 TGIRSYAVMMAKLLDLK 97 (97)
Q Consensus 81 ~~~~~YA~~v~~~LDP~ 97 (97)
.|+++||+.+..++||.
T Consensus 99 ~~~~~~~~~~~~i~d~~ 115 (390)
T COG5190 99 MGTRAYAERIAKIIDPT 115 (390)
T ss_pred eccccchhhhhhccccc
Confidence 99999999999999995
No 11
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.66 E-value=6.3e-08 Score=71.36 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=50.0
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEec-chHHHHHHHHh-hcceEEEEeCC
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLR-PYIRKFLKEAS-KMYEIYLCTTG 82 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R-P~~~~FL~~ls-~~~ei~i~T~~ 82 (97)
+.+..+|+||||||+-... -|.+| ||+.+.|++|. +++.++|+|++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~--------------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~ 171 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE--------------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYG 171 (301)
T ss_pred ccceEEEEecCCCCcCCCC--------------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4567899999999997742 14478 99999999995 56999999999
Q ss_pred chHHHHHHHHhhC
Q 040601 83 IRSYAVMMAKLLD 95 (97)
Q Consensus 83 ~~~YA~~v~~~LD 95 (97)
.+++|..+++.++
T Consensus 172 ~Re~v~~~L~~lG 184 (301)
T TIGR01684 172 DRDHVVESMRKVK 184 (301)
T ss_pred CHHHHHHHHHHcC
Confidence 9999999998765
No 12
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.62 E-value=7.2e-08 Score=71.10 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=50.7
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEec-chHHHHHHHHh-hcceEEEEeC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLR-PYIRKFLKEAS-KMYEIYLCTT 81 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R-P~~~~FL~~ls-~~~ei~i~T~ 81 (97)
.+.+..+|+||||||+.... -|.+| |++.+.|++|. +++.++|+|+
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~--------------------------------~v~irdp~V~EtL~eLkekGikLaIvTN 172 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE--------------------------------PVRIRDPFVYDSLDELKERGCVLVLWSY 172 (303)
T ss_pred eeeccEEEEecCCCccCCCC--------------------------------ccccCChhHHHHHHHHHHCCCEEEEEcC
Confidence 45678899999999998732 14478 99999999995 5799999999
Q ss_pred CchHHHHHHHHhhC
Q 040601 82 GIRSYAVMMAKLLD 95 (97)
Q Consensus 82 ~~~~YA~~v~~~LD 95 (97)
+.+++|..+++.+.
T Consensus 173 g~Re~v~~~Le~lg 186 (303)
T PHA03398 173 GNREHVVHSLKETK 186 (303)
T ss_pred CChHHHHHHHHHcC
Confidence 99999999998764
No 13
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.41 E-value=8.4e-07 Score=55.32 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=48.4
Q ss_pred eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-cceEEEEeCCchHHH
Q 040601 9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYA 87 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA 87 (97)
++|+|+|+||......... ......+|++.++|+.+.+ .+.++|.|++.+.++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~ 54 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE--------------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREV 54 (139)
T ss_pred CeEEccCCceEccCccccc--------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHH
Confidence 4799999999887542110 1235689999999999965 599999999999999
Q ss_pred HHHHHhhC
Q 040601 88 VMMAKLLD 95 (97)
Q Consensus 88 ~~v~~~LD 95 (97)
..+++.+.
T Consensus 55 ~~~~~~~~ 62 (139)
T cd01427 55 LELLEELG 62 (139)
T ss_pred HHHHHHcC
Confidence 99987653
No 14
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.38 E-value=7.2e-07 Score=57.88 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=33.6
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCC-chHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTG-IRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~-~~~YA~~v~~~LD 95 (97)
...||+.++|+.+ ++.+.++|.|++ .+.++..+++...
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 5889999999999 468999999999 9999999887643
No 15
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.34 E-value=2.3e-06 Score=54.95 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=46.7
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc---
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI--- 83 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~--- 83 (97)
+.+++|+|+||++.. .....+ -.....||+.++|+.|. ..+.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~--~~~~~~------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~ 54 (132)
T TIGR01662 1 KGVVLDLDGTLTDDV--PYVDDE------------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIG 54 (132)
T ss_pred CEEEEeCCCceecCC--CCCCCH------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCcccc
Confidence 368999999999641 111111 02347899999999994 679999999999
Q ss_pred -----hHHHHHHHHhhC
Q 040601 84 -----RSYAVMMAKLLD 95 (97)
Q Consensus 84 -----~~YA~~v~~~LD 95 (97)
..+++++++.+.
T Consensus 55 ~~~~~~~~~~~~l~~~~ 71 (132)
T TIGR01662 55 RGKFSSGRVARRLEELG 71 (132)
T ss_pred ccHHHHHHHHHHHHHCC
Confidence 888888887654
No 16
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.33 E-value=2.6e-06 Score=61.01 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCCceEEEeCCCeeeeeecc-----CccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEE
Q 040601 4 RQKKLHLVLDLDHTLLHAVDI-----DILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIY 77 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~ 77 (97)
.++++.++|||||||+.|+.. +..++....++..+ .....+. ....-.....|++.+||+.+ .+.+.++
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~----~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G~~i~ 134 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQ----VFWEKVN-NGWDEFSIPKEVARQLIDMHQRRGDAIF 134 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcCh----HHHHHHH-HhcccCCcchhHHHHHHHHHHHCCCEEE
Confidence 344569999999999999762 10111100111110 0000000 01122334566699999999 5689999
Q ss_pred EEeCC----chHHHHHHHHhhC
Q 040601 78 LCTTG----IRSYAVMMAKLLD 95 (97)
Q Consensus 78 i~T~~----~~~YA~~v~~~LD 95 (97)
|.|+. .+.+++.+++.+.
T Consensus 135 iVTnr~~~k~~~~a~~ll~~lG 156 (237)
T TIGR01672 135 FVTGRTPGKTDTVSKTLAKNFH 156 (237)
T ss_pred EEeCCCCCcCHHHHHHHHHHhC
Confidence 99998 6779999987653
No 17
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.26 E-value=5.9e-06 Score=56.68 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=52.9
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC-ch
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG-IR 84 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~-~~ 84 (97)
+..+|+|||.||..-....-..+. +-.. +..+..+ .....--+.++||+.++|+.| ++.+.+.|.|++ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~---~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~ 73 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGP---FKPV--KQNNSII---IDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVP 73 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCC---ceec--cCCCCeE---EeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCCh
Confidence 357899999999866543321111 0000 0000000 011223567899999999999 578999999998 99
Q ss_pred HHHHHHHHhhC
Q 040601 85 SYAVMMAKLLD 95 (97)
Q Consensus 85 ~YA~~v~~~LD 95 (97)
.+++.+++.++
T Consensus 74 ~~~~~~L~~~~ 84 (174)
T TIGR01685 74 EWAYEILGTFE 84 (174)
T ss_pred HHHHHHHHhCC
Confidence 99999988765
No 18
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.24 E-value=4.5e-06 Score=55.00 Aligned_cols=53 Identities=23% Similarity=0.082 Sum_probs=39.9
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCch
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIR 84 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~ 84 (97)
+++++|+||||+..........+ --+...||+.++|+.| .+.|.++|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~------------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSL------------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCH------------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 36899999999998653211111 0135789999999999 57899999999874
No 19
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.19 E-value=1e-05 Score=54.83 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=46.1
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS 85 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~ 85 (97)
++.+++|+||||+-+......... ..-+....||+.+.|+.| .+.+.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~----------------------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTS----------------------ASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGI 70 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCC----------------------hHHeEEecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 467899999999976431100000 001334679999999999 578999999998763
Q ss_pred ------------HHHHHHHhhC
Q 040601 86 ------------YAVMMAKLLD 95 (97)
Q Consensus 86 ------------YA~~v~~~LD 95 (97)
+++.+++.++
T Consensus 71 ~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 71 GRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred ccCcccHHHHHHHHHHHHHHcC
Confidence 5666776654
No 20
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.06 E-value=1.7e-05 Score=57.71 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=48.5
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
+.+|+.+|+|+|||++..+... .+ ........ +...+.--...--...-||+.+||+.+ ++...+++.|+.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~---~~----~~~~~~~~-~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR 143 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQ---GY----QVLNNKPF-DPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNR 143 (266)
T ss_pred CCCCCEEEEeCccccccChHHH---HH----HhcCCCcC-CHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCC
Confidence 4678999999999999876320 00 00000000 000000000011234679999999999 677899999998
Q ss_pred chHHHHHHHHh
Q 040601 83 IRSYAVMMAKL 93 (97)
Q Consensus 83 ~~~YA~~v~~~ 93 (97)
.....+...+.
T Consensus 144 ~~~~~~~T~~~ 154 (266)
T TIGR01533 144 SEKEKAATLKN 154 (266)
T ss_pred CcchHHHHHHH
Confidence 87776655443
No 21
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.03 E-value=2.4e-05 Score=53.52 Aligned_cols=81 Identities=22% Similarity=0.207 Sum_probs=46.0
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEe-CCc
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCT-TGI 83 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T-~~~ 83 (97)
-++.+|+|||.||-.........+. +... ....... .....-+.+.|++.+.|+.+. ...++++.| +..
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~P----f~~~---~~~~~v~--D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~ 72 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPP----FKKI---SNGNVVV--DSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE 72 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-----EEE----TTS--EE--ETT--EE---TTHHHHHHHHHHCT--EEEEE--S-
T ss_pred CCcEEEEcCcCCCCchhHhhccCCC----ceec---CCCCEEE--eCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC
Confidence 4678999999999877655433221 0000 0000111 123446889999999999995 689999999 567
Q ss_pred hHHHHHHHHhhC
Q 040601 84 RSYAVMMAKLLD 95 (97)
Q Consensus 84 ~~YA~~v~~~LD 95 (97)
++.|+++++.|+
T Consensus 73 P~~A~~~L~~l~ 84 (169)
T PF12689_consen 73 PDWARELLKLLE 84 (169)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHHhcC
Confidence 899999999875
No 22
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.01 E-value=3e-06 Score=58.48 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=35.3
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.+||+.+. +.+.++|.|++...+++.+++.+.
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~ 123 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLG 123 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 3568999999999995 579999999999999999998753
No 23
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.01 E-value=2.3e-05 Score=52.91 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=46.7
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC----
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG---- 82 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~---- 82 (97)
+.+.||.||||++..... .... ..-.++..||+.++|+.|. +.|.++|.||.
T Consensus 2 ~~~~~d~dg~l~~~~~~~-~~~~----------------------~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~ 58 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD-FQVD----------------------ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLG 58 (161)
T ss_pred CEEEEeCCCCccccCCCc-cccC----------------------CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 578999999999953211 0000 0114678999999999996 57999999996
Q ss_pred -----------chHHHHHHHHhhC
Q 040601 83 -----------IRSYAVMMAKLLD 95 (97)
Q Consensus 83 -----------~~~YA~~v~~~LD 95 (97)
...++..+++.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~g 82 (161)
T TIGR01261 59 TPSFPQADFDGPHNLMLQIFRSQG 82 (161)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHCC
Confidence 3667888877643
No 24
>PRK08238 hypothetical protein; Validated
Probab=97.96 E-value=5.9e-06 Score=64.43 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=34.8
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..+|++.++++++ ++.+.++|.|++.+.+++++++++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG 110 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG 110 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 4789999999999 6789999999999999999998864
No 25
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.96 E-value=3.8e-05 Score=55.05 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCC-CCCceee--ecceEEEEEecchHHHHHHHH-hhcceEEEEe
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSS-SDGDLFK--MAGELFLVKLRPYIRKFLKEA-SKMYEIYLCT 80 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T 80 (97)
++|+.+++|+|||+++++...-.. . ..+....... ++...+. ..+...+....||+.+||+.+ ++.+++++-|
T Consensus 61 ~~p~av~~DIDeTvldnsp~~~~~-~--~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVT 137 (237)
T PRK11009 61 RPPMAVGFDIDDTVLFSSPGFWRG-K--KTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFIT 137 (237)
T ss_pred CCCcEEEEECcCccccCCchheee-e--eccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEe
Confidence 346699999999999975422111 1 0010000000 0000000 011234566788899999999 7899999999
Q ss_pred C----CchHHHHHHHHhh
Q 040601 81 T----GIRSYAVMMAKLL 94 (97)
Q Consensus 81 ~----~~~~YA~~v~~~L 94 (97)
+ ....+++.+++.+
T Consensus 138 nR~~~k~~~t~~~Llk~~ 155 (237)
T PRK11009 138 GRTATKTETVSKTLADDF 155 (237)
T ss_pred CCCCcccHHHHHHHHHHc
Confidence 9 4567888887644
No 26
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.95 E-value=4.6e-05 Score=51.53 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=37.3
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
+.+.||.||||+-.... .... --+.+.||+.++|++|. +.|.++|.||+..
T Consensus 2 ~~~~~D~Dgtl~~~~~~--~~~~------------------------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGY--VHEI------------------------DNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCC--CCCH------------------------HHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 56899999999942111 1111 02447799999999995 6799999999985
No 27
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.92 E-value=4.6e-05 Score=60.15 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=49.4
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
+.+.+.+.||+||||+.+......+.. .. =|..+.||+.+.|+.| .+.|.++|+||.
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~--------------~~--------d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ 222 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKG--------------PD--------DWQIIFPEIPEKLKELEADGFKICIFTNQ 222 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCC--------------HH--------HeeecccCHHHHHHHHHHCCCEEEEEECC
Confidence 456789999999999976431111100 00 0334679999999999 578999999998
Q ss_pred ch------------HHHHHHHHhhC
Q 040601 83 IR------------SYAVMMAKLLD 95 (97)
Q Consensus 83 ~~------------~YA~~v~~~LD 95 (97)
.. ..++.+++.++
T Consensus 223 ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 223 GGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred cccccCcccHHHHHHHHHHHHHHcC
Confidence 77 56777877664
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.91 E-value=5.7e-05 Score=51.12 Aligned_cols=53 Identities=13% Similarity=-0.034 Sum_probs=38.2
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
.+.+++|+||||+-.... .... . -.+...||+.++|++|. +.+.++|.|+++.
T Consensus 3 ~~~~~~d~~~t~~~~~~~--~~~~----~-------------------~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG--YVKS----P-------------------DEWIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred ccEEEEECCCCcccCCcc--ccCC----H-------------------HHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 578999999998655321 1110 0 02457899999999996 4699999999873
No 29
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.88 E-value=4.7e-05 Score=56.00 Aligned_cols=61 Identities=23% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-cceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-MYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~ 82 (97)
-+.+-.+|+|||+|||-....-.+ .-|.+.+-|.++.+ +.-+++|+.|
T Consensus 119 ~~~phVIVfDlD~TLItd~~~v~I-------------------------------r~~~v~~sL~~Lk~~g~vLvLWSyG 167 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLITDEGDVRI-------------------------------RDPAVYDSLRELKEQGCVLVLWSYG 167 (297)
T ss_pred CCCCcEEEEECCCcccccCCcccc-------------------------------CChHHHHHHHHHHHcCCEEEEecCC
Confidence 356678999999999987542110 23678889999964 5589999999
Q ss_pred chHHHHHHHHhhC
Q 040601 83 IRSYAVMMAKLLD 95 (97)
Q Consensus 83 ~~~YA~~v~~~LD 95 (97)
.+++|...++.++
T Consensus 168 ~~eHV~~sl~~~~ 180 (297)
T PF05152_consen 168 NREHVRHSLKELK 180 (297)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999988765
No 30
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.83 E-value=3.8e-05 Score=56.67 Aligned_cols=65 Identities=22% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
.++++|+|||+||.....-.. ... +.. .....||+.++|+.+. +.+.+.|.|++.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~-g~~---------------------~i~-~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~ 58 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGED-GID---------------------NLN-LSPLHKTLQEKIKTLKKQGFLLALASKNDE 58 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccC-Ccc---------------------ccc-cCccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence 468999999999997653210 000 000 1225899999999994 7899999999999
Q ss_pred HHHHHHHHh
Q 040601 85 SYAVMMAKL 93 (97)
Q Consensus 85 ~YA~~v~~~ 93 (97)
..|..+++.
T Consensus 59 ~~a~~~l~~ 67 (320)
T TIGR01686 59 DDAKKVFER 67 (320)
T ss_pred HHHHHHHHh
Confidence 999999886
No 31
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.74 E-value=4e-05 Score=51.65 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=34.7
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
+.+.+|+|||||........+.. ... |...-|++.+-|+++ .+.|.|+|+||.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~--------------~~D--------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKD--------------PDD--------WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SS--------------TCG--------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcCC--------------HHH--------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 36789999999999653221110 000 345678999999999 468999999996
No 32
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.72 E-value=5.9e-05 Score=53.38 Aligned_cols=38 Identities=13% Similarity=-0.047 Sum_probs=33.8
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.|. +.+.++|.|++.+.+++.+++.+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA 136 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH
Confidence 578899999999994 67999999999999999998754
No 33
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.55 E-value=0.00024 Score=44.45 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=23.8
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCc----hHHHHHH
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGI----RSYAVMM 90 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~----~~YA~~v 90 (97)
.-||+.+|++.+. ....+++.||++ .+|++..
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 3489999999995 569999999998 4555544
No 34
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.54 E-value=0.00023 Score=51.44 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=52.2
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~ 82 (97)
+.++..+++|+|+||......... .| .. ..-....|++.++|+.+. +.+.++|.|+.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~~~-~~----~~-----------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r 212 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRSPY-DW----TK-----------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGR 212 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCCcc-ch----hh-----------------cccCCCChhHHHHHHHHHhCCCEEEEEeCC
Confidence 345688999999999977542110 11 00 012347899999999994 57999999999
Q ss_pred chHHHHHHHHhhC
Q 040601 83 IRSYAVMMAKLLD 95 (97)
Q Consensus 83 ~~~YA~~v~~~LD 95 (97)
....++.+++.|+
T Consensus 213 ~~~~~~~~l~~l~ 225 (300)
T PHA02530 213 DGVCEEDTVEWLR 225 (300)
T ss_pred ChhhHHHHHHHHH
Confidence 9999999998864
No 35
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.52 E-value=0.00032 Score=52.98 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG 82 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~ 82 (97)
+|+.|+||=|+||+...... ++. .....+.++||+.++|+.|. +.+.++|.|++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~--------y~~---------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD--------FQV---------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc--------ccc---------------cCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 47899999999999985321 110 01124779999999999995 57999999995
No 36
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.52 E-value=0.00027 Score=47.76 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=45.1
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~ 82 (97)
+.+-..+|+|+|+||..... ....||+.++|+.|. ..+.++|.|++
T Consensus 22 ~~~v~~vv~D~Dgtl~~~~~---------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~ 68 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYPDH---------------------------------NEAYPALRDWIEELKAAGRKLLIVSNN 68 (170)
T ss_pred HCCCCEEEEecCCccccCCC---------------------------------CCcChhHHHHHHHHHHcCCEEEEEeCC
Confidence 34456788999999885421 114689999999995 56999999999
Q ss_pred c-hHHHHHHHHhhC
Q 040601 83 I-RSYAVMMAKLLD 95 (97)
Q Consensus 83 ~-~~YA~~v~~~LD 95 (97)
. ...+..+++.++
T Consensus 69 ~~~~~~~~~~~~~g 82 (170)
T TIGR01668 69 AGEQRAKAVEKALG 82 (170)
T ss_pred chHHHHHHHHHHcC
Confidence 9 688888777654
No 37
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.47 E-value=0.00017 Score=51.63 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=33.1
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
+...||+.++|+.|. +.+.++|.|++.+..++.+++.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~ 137 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPL 137 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH
Confidence 567899999999994 6799999999999999988874
No 38
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.39 E-value=0.00037 Score=45.57 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=38.6
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHH
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSY 86 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~Y 86 (97)
+.+++|+||||......+ .. .....|.+.+.|+++ .+.++++++|+-....
T Consensus 2 K~i~~DiDGTL~~~~~~~---y~-------------------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGD---YA-------------------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred CEEEEeCCCCcccCCCCc---cc-------------------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 478999999997542111 00 123678889999998 6789999999888777
Q ss_pred HH
Q 040601 87 AV 88 (97)
Q Consensus 87 A~ 88 (97)
..
T Consensus 54 ~~ 55 (126)
T TIGR01689 54 YE 55 (126)
T ss_pred hh
Confidence 65
No 39
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.39 E-value=0.001 Score=44.25 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=30.1
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..++|+. -+++|. +.+.++|.|+..+..+..+++.+.
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g 66 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLG 66 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC
Confidence 4577776 688884 679999999999999999887653
No 40
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.38 E-value=0.0011 Score=44.32 Aligned_cols=76 Identities=24% Similarity=0.228 Sum_probs=52.7
Q ss_pred eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeee-cceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHH
Q 040601 9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKM-AGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSY 86 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~Y 86 (97)
.+|+|+|+||-.....+.+.+. + +....-.+ +....-|.++|++++||+++ ...|-+..+|=+-..=
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pP----f-------~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k 70 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPP----F-------RRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK 70 (164)
T ss_pred cEEEeCCCcccccccchhcCCc----c-------eecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH
Confidence 4799999999865443322221 0 00011111 12345688999999999999 4788899999999999
Q ss_pred HHHHHHhhC
Q 040601 87 AVMMAKLLD 95 (97)
Q Consensus 87 A~~v~~~LD 95 (97)
|-+++..||
T Consensus 71 A~~aLral~ 79 (164)
T COG4996 71 AIKALRALD 79 (164)
T ss_pred HHHHHHHhc
Confidence 999988877
No 41
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.35 E-value=9e-05 Score=55.19 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=35.1
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+.++||+.++++.+. ..+.++|.|++...+++.+.+.++
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lg 219 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLR 219 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcC
Confidence 3668999999999995 679999999999999999888654
No 42
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.34 E-value=0.00065 Score=46.65 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=46.9
Q ss_pred CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEe
Q 040601 2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCT 80 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T 80 (97)
|.+++-..+++|||+|||-=.. +. .-|.+++-++.+. ..-.++|.+
T Consensus 23 L~~~Gikgvi~DlDNTLv~wd~-~~--------------------------------~tpe~~~W~~e~k~~gi~v~vvS 69 (175)
T COG2179 23 LKAHGIKGVILDLDNTLVPWDN-PD--------------------------------ATPELRAWLAELKEAGIKVVVVS 69 (175)
T ss_pred HHHcCCcEEEEeccCceecccC-CC--------------------------------CCHHHHHHHHHHHhcCCEEEEEe
Confidence 4567889999999999996532 11 2366778888884 568899999
Q ss_pred CCchHHHHHHHHhhC
Q 040601 81 TGIRSYAVMMAKLLD 95 (97)
Q Consensus 81 ~~~~~YA~~v~~~LD 95 (97)
|+++.-+..+++.||
T Consensus 70 Nn~e~RV~~~~~~l~ 84 (175)
T COG2179 70 NNKESRVARAAEKLG 84 (175)
T ss_pred CCCHHHHHhhhhhcC
Confidence 999888888887776
No 43
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.34 E-value=0.00048 Score=48.71 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=37.4
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
+-..+++|+||||.+... ..||+.++|+++. +.+.++|.||+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~-----------------------------------~~pga~e~L~~L~~~G~~~~ivTN~~~ 51 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH-----------------------------------TYPGAVQNLNKIIAQGKPVYFVSNSPR 51 (242)
T ss_pred cCCEEEEecccccccCCc-----------------------------------cCccHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345688999999986532 3577778888874 5677788887777
Q ss_pred HHHH--HHHHhh
Q 040601 85 SYAV--MMAKLL 94 (97)
Q Consensus 85 ~YA~--~v~~~L 94 (97)
..++ +.++.+
T Consensus 52 ~~~~~~~~L~~~ 63 (242)
T TIGR01459 52 NIFSLHKTLKSL 63 (242)
T ss_pred ChHHHHHHHHHC
Confidence 6655 445544
No 44
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.32 E-value=0.00061 Score=48.91 Aligned_cols=55 Identities=27% Similarity=0.242 Sum_probs=36.7
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS 85 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~ 85 (97)
.+.+++||||||+.+... ..|...+.|+.+. +...++|.|.-...
T Consensus 4 ~kli~~DlDGTLl~~~~~----------------------------------~~~~~~~ai~~l~~~Gi~~~iaTgR~~~ 49 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTY----------------------------------SYEPAKPALKALKEKGIPVIPCTSKTAA 49 (273)
T ss_pred ceEEEEcCcccCcCCCCc----------------------------------CcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 468999999999975321 1244556666664 45677777777777
Q ss_pred HHHHHHHhhC
Q 040601 86 YAVMMAKLLD 95 (97)
Q Consensus 86 YA~~v~~~LD 95 (97)
.+..+++.++
T Consensus 50 ~~~~~~~~l~ 59 (273)
T PRK00192 50 EVEVLRKELG 59 (273)
T ss_pred HHHHHHHHcC
Confidence 7777666554
No 45
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.25 E-value=0.0007 Score=46.38 Aligned_cols=51 Identities=29% Similarity=0.258 Sum_probs=35.0
Q ss_pred EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHH
Q 040601 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAV 88 (97)
Q Consensus 10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~ 88 (97)
+++||||||+++... ++ |...+.|+++ ++...+++.|.-....+.
T Consensus 1 i~~DlDGTLl~~~~~--i~--------------------------------~~~~~al~~l~~~g~~~~i~TGR~~~~~~ 46 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK--IS--------------------------------PETIEALKELQEKGIKLVIATGRSYSSIK 46 (254)
T ss_dssp EEEECCTTTCSTTSS--SC--------------------------------HHHHHHHHHHHHTTCEEEEECSSTHHHHH
T ss_pred cEEEECCceecCCCe--eC--------------------------------HHHHHHHHhhcccceEEEEEccCcccccc
Confidence 689999999996432 22 3445566666 367777777777777777
Q ss_pred HHHHhh
Q 040601 89 MMAKLL 94 (97)
Q Consensus 89 ~v~~~L 94 (97)
.++..+
T Consensus 47 ~~~~~~ 52 (254)
T PF08282_consen 47 RLLKEL 52 (254)
T ss_dssp HHHHHT
T ss_pred cccccc
Confidence 776643
No 46
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.23 E-value=0.0014 Score=47.08 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=18.0
Q ss_pred CCcCCCCceEEEeCCCeeeeee
Q 040601 1 MVYRQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 1 ~ll~~~k~~LVLDLDeTLvhs~ 22 (97)
||--+.++.+++||||||+++.
T Consensus 1 ~~~~~~~~lI~~DlDGTLL~~~ 22 (271)
T PRK03669 1 MLSLQDPLLIFTDLDGTLLDSH 22 (271)
T ss_pred CCCcCCCeEEEEeCccCCcCCC
Confidence 5555678889999999999864
No 47
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.15 E-value=0.0014 Score=46.60 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
..+.+++||||||+.+..
T Consensus 2 ~~kli~~DlDGTLl~~~~ 19 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK 19 (264)
T ss_pred CeeEEEEcCCCCccCCCC
Confidence 357899999999998865
No 48
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.07 E-value=0.0016 Score=44.96 Aligned_cols=13 Identities=46% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEEeCCCeeeeee
Q 040601 10 LVLDLDHTLLHAV 22 (97)
Q Consensus 10 LVLDLDeTLvhs~ 22 (97)
+++||||||+.+.
T Consensus 2 i~~DlDGTLL~~~ 14 (221)
T TIGR02463 2 VFSDLDGTLLDSH 14 (221)
T ss_pred EEEeCCCCCcCCC
Confidence 7899999999764
No 49
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.02 E-value=0.0023 Score=44.22 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.8
Q ss_pred ceEEEeCCCeeeee
Q 040601 8 LHLVLDLDHTLLHA 21 (97)
Q Consensus 8 ~~LVLDLDeTLvhs 21 (97)
+.+++||||||+..
T Consensus 2 k~v~~DlDGTLl~~ 15 (215)
T TIGR01487 2 KLVAIDIDGTLTEP 15 (215)
T ss_pred cEEEEecCCCcCCC
Confidence 46899999999964
No 50
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.00 E-value=0.0023 Score=45.23 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=11.3
Q ss_pred EEEeCCCeeeeee
Q 040601 10 LVLDLDHTLLHAV 22 (97)
Q Consensus 10 LVLDLDeTLvhs~ 22 (97)
+++||||||+...
T Consensus 2 i~~DlDGTLl~~~ 14 (256)
T TIGR00099 2 IFIDLDGTLLNDD 14 (256)
T ss_pred EEEeCCCCCCCCC
Confidence 7899999999863
No 51
>PRK10444 UMP phosphatase; Provisional
Probab=96.99 E-value=0.0018 Score=46.38 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=12.3
Q ss_pred eEEEeCCCeeeeee
Q 040601 9 HLVLDLDHTLLHAV 22 (97)
Q Consensus 9 ~LVLDLDeTLvhs~ 22 (97)
.+++|+||||+++.
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 67899999999874
No 52
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.91 E-value=0.0028 Score=44.66 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=10.9
Q ss_pred EEEeCCCeeeee
Q 040601 10 LVLDLDHTLLHA 21 (97)
Q Consensus 10 LVLDLDeTLvhs 21 (97)
+++||||||++.
T Consensus 2 i~~DlDGTLl~~ 13 (225)
T TIGR02461 2 IFTDLDGTLLPP 13 (225)
T ss_pred EEEeCCCCCcCC
Confidence 689999999994
No 53
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.90 E-value=0.0032 Score=44.72 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.5
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
.+.+++||||||+++.
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD 18 (270)
T ss_pred eEEEEEecCCcCcCCC
Confidence 4678999999999864
No 54
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.85 E-value=0.005 Score=43.55 Aligned_cols=16 Identities=44% Similarity=0.447 Sum_probs=13.5
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
.+.+++||||||+.+.
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 3 YRVIALDLDGTLLTPK 18 (272)
T ss_pred ccEEEEeCCCceECCC
Confidence 4688999999999764
No 55
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.80 E-value=0.0042 Score=45.95 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=36.8
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-----cceEEEEeCC
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-----MYEIYLCTTG 82 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-----~~ei~i~T~~ 82 (97)
+.+++|+||||+++.. .-||+.++++.+.. ...+.+.||+
T Consensus 1 ~~~ifD~DGvL~~g~~-----------------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn 45 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK-----------------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNG 45 (321)
T ss_pred CEEEEeCcCceECCcc-----------------------------------ccHHHHHHHHHHhccccccCCCEEEEecC
Confidence 4689999999998742 24677888888854 7778888877
Q ss_pred c----hHHHHHHHHh
Q 040601 83 I----RSYAVMMAKL 93 (97)
Q Consensus 83 ~----~~YA~~v~~~ 93 (97)
. +.+|+.+.+.
T Consensus 46 ~g~s~~~~~~~l~~~ 60 (321)
T TIGR01456 46 GGFSERARAEEISSL 60 (321)
T ss_pred CCCCHHHHHHHHHHH
Confidence 5 5566665443
No 56
>PRK06769 hypothetical protein; Validated
Probab=96.72 E-value=0.0045 Score=41.86 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.0
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
+...||+.++|++|. +.+.++|.|++..
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 347899999999994 6799999999874
No 57
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.71 E-value=0.0044 Score=41.57 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=31.3
Q ss_pred EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHHH
Q 040601 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYA 87 (97)
Q Consensus 10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA 87 (97)
+++|+||||+.+.....+..- + +.. +..|++.++++++. +.+.+++.|+.....+
T Consensus 2 VisDIDGTL~~sd~~~~~~~~----~----------------~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~ 57 (157)
T smart00775 2 VISDIDGTITKSDVLGHVVPI----I----------------GKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQA 57 (157)
T ss_pred EEEecCCCCcccccccccccc----c----------------ccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHH
Confidence 789999999987522110000 0 000 23577777777773 4566666666655544
No 58
>PLN02645 phosphoglycolate phosphatase
Probab=96.70 E-value=0.0038 Score=45.96 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=34.1
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS 85 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~ 85 (97)
-..+++|+||||.+... .=||+.++|+.+ .+...+++.||++..
T Consensus 28 ~~~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~ 72 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK-----------------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTK 72 (311)
T ss_pred CCEEEEeCcCCeEeCCc-----------------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 35789999999987632 126777888887 457778888877644
Q ss_pred HHHHHH
Q 040601 86 YAVMMA 91 (97)
Q Consensus 86 YA~~v~ 91 (97)
-...++
T Consensus 73 ~~~~~~ 78 (311)
T PLN02645 73 SRAQYG 78 (311)
T ss_pred CHHHHH
Confidence 333333
No 59
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.68 E-value=0.0065 Score=42.01 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.8
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
+.+++||||||+.+.
T Consensus 4 kli~~DlDGTLl~~~ 18 (230)
T PRK01158 4 KAIAIDIDGTITDKD 18 (230)
T ss_pred eEEEEecCCCcCCCC
Confidence 678999999999754
No 60
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.66 E-value=0.0052 Score=44.06 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.8
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS 85 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~ 85 (97)
+.+++|+||||.+..... + ..-||..++++++. +...+++.|+.+..
T Consensus 2 k~i~~D~DGtl~~~~~~~----~---------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS----G---------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CEEEEeCCCeEEeCCCcc----c---------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 368999999999874310 0 02467888888884 56888888875544
No 61
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.66 E-value=0.0029 Score=43.93 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=35.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+.++||+.+||+.+. +.+.++|.|++.+.|++++++.+
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 3679999999999995 67999999999999999999864
No 62
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0045 Score=45.29 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI 83 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~ 83 (97)
.+..+..+||||||++... .=||+.+||+.+. +.-.+++-||++
T Consensus 6 ~~y~~~l~DlDGvl~~G~~-----------------------------------~ipga~e~l~~L~~~g~~~iflTNn~ 50 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE-----------------------------------AIPGAAEALKRLKAAGKPVIFLTNNS 50 (269)
T ss_pred hhcCEEEEcCcCceEeCCc-----------------------------------cCchHHHHHHHHHHcCCeEEEEeCCC
Confidence 3456789999999997743 2388899999994 568889999988
Q ss_pred hHHHHHHHHhh
Q 040601 84 RSYAVMMAKLL 94 (97)
Q Consensus 84 ~~YA~~v~~~L 94 (97)
..-++.+.+.|
T Consensus 51 ~~s~~~~~~~L 61 (269)
T COG0647 51 TRSREVVAARL 61 (269)
T ss_pred CCCHHHHHHHH
Confidence 66555444433
No 63
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.61 E-value=0.0067 Score=41.32 Aligned_cols=12 Identities=58% Similarity=0.814 Sum_probs=10.8
Q ss_pred EEEeCCCeeeee
Q 040601 10 LVLDLDHTLLHA 21 (97)
Q Consensus 10 LVLDLDeTLvhs 21 (97)
+++|+||||+..
T Consensus 2 i~~D~DgTL~~~ 13 (204)
T TIGR01484 2 LFFDLDGTLLDP 13 (204)
T ss_pred EEEeCcCCCcCC
Confidence 789999999975
No 64
>PRK10976 putative hydrolase; Provisional
Probab=96.60 E-value=0.007 Score=42.91 Aligned_cols=15 Identities=40% Similarity=0.355 Sum_probs=13.1
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
+.+++||||||+.+.
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 578999999999874
No 65
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.56 E-value=0.008 Score=42.89 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.9
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
+.+++||||||+.+.
T Consensus 3 kli~~DlDGTLl~~~ 17 (272)
T PRK15126 3 RLAAFDMDGTLLMPD 17 (272)
T ss_pred cEEEEeCCCcCcCCC
Confidence 578999999999764
No 66
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.47 E-value=0.0052 Score=42.62 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=36.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+.+|||+.+||+.+. ....++|.|++.+.|++++++.+.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 4789999999999995 579999999999999999998864
No 67
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.47 E-value=0.008 Score=42.64 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=12.0
Q ss_pred EEEeCCCeeeeeec
Q 040601 10 LVLDLDHTLLHAVD 23 (97)
Q Consensus 10 LVLDLDeTLvhs~~ 23 (97)
+++||||||+++..
T Consensus 2 i~~DlDGTll~~~~ 15 (256)
T TIGR01486 2 IFTDLDGTLLDPHG 15 (256)
T ss_pred EEEcCCCCCcCCCC
Confidence 78999999998754
No 68
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.46 E-value=0.022 Score=40.76 Aligned_cols=83 Identities=16% Similarity=0.039 Sum_probs=47.2
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
..+|..+|||+|||++....-. .. ..+.. ... +...|.-=-..--...-|++.+|++.+ +..++|++.|.=
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~---~~--~~~g~--~~~-~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR 145 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYY---KK--HGYGT--EKT-DPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGR 145 (229)
T ss_pred CCCCcEEEEccccccccCHHHH---HH--hccCC--CcC-CHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4589999999999999875311 00 00000 000 000000000000124678999999998 678999999988
Q ss_pred chHHHHHHHHhh
Q 040601 83 IRSYAVMMAKLL 94 (97)
Q Consensus 83 ~~~YA~~v~~~L 94 (97)
.....+...+.|
T Consensus 146 ~e~~r~~T~~nL 157 (229)
T TIGR01675 146 WEELRNATLDNL 157 (229)
T ss_pred ChHHHHHHHHHH
Confidence 776655554443
No 69
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.45 E-value=0.0068 Score=41.69 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=11.2
Q ss_pred EEEeCCCeeeeee
Q 040601 10 LVLDLDHTLLHAV 22 (97)
Q Consensus 10 LVLDLDeTLvhs~ 22 (97)
+++||||||+.+.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5799999999864
No 70
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.43 E-value=0.0084 Score=43.29 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.5
Q ss_pred ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601 8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI 83 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~ 83 (97)
..+++|+||||++... .-||+.++|+++. +...+++.|+++
T Consensus 3 ~~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGER-----------------------------------VVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCCe-----------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4688999999977532 2356777777774 456777777643
No 71
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.37 E-value=0.0085 Score=43.27 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.7
Q ss_pred CceEEEeCCCeeeeeecc
Q 040601 7 KLHLVLDLDHTLLHAVDI 24 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~ 24 (97)
+..+++|+||||+.....
T Consensus 14 ~~li~~D~DGTLl~~~~~ 31 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPH 31 (266)
T ss_pred CEEEEEecCCCCCCCCCC
Confidence 578999999999986443
No 72
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.36 E-value=0.0081 Score=43.08 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.4
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
++.-|-+|+||-++.+.+ .++||||.+..|..++..|-
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LG 136 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLG 136 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhC
Confidence 677778999999997766 99999999999999998873
No 73
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.34 E-value=0.013 Score=40.17 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.9
Q ss_pred CcCCCCceEEEeCCCeeeeee
Q 040601 2 VYRQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~ 22 (97)
|.+.+=..+|+|+|+||+.-.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~ 56 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPY 56 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCC
Confidence 556677899999999997553
No 74
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.31 E-value=0.01 Score=42.31 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.5
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
..+++|+||||....
T Consensus 2 ~~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 2 KGYLIDLDGTMYKGK 16 (249)
T ss_pred CEEEEeCCCceEcCC
Confidence 368999999999764
No 75
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=96.30 E-value=0.022 Score=38.85 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=18.3
Q ss_pred hcceEEEEeCCchHHHHHHHHhh
Q 040601 72 KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 72 ~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+.++++|.|+.....+.++++.+
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHc
Confidence 67888888888888888887765
No 76
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.28 E-value=0.0068 Score=44.54 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=35.5
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
-+.+|||+.+|++.| .....++|+|+|...+++.+++.+
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 578999999999999 567999999999999999999853
No 77
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.28 E-value=0.016 Score=37.44 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=37.0
Q ss_pred EEEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 55 FLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 55 ~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
......||+.++|+.++ +.+.+++.|++.+.+++.+++.+.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccc
Confidence 46789999999999997 899999999999999999988653
No 78
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.15 E-value=0.01 Score=40.40 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=35.6
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.++|+.+. +.+.++|.|++.+.+++.+++.++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 123 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLG 123 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 4678999999999995 679999999999999999998754
No 79
>PTZ00174 phosphomannomutase; Provisional
Probab=96.10 E-value=0.021 Score=40.53 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.8
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
..+.+++||||||+++..
T Consensus 4 ~~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN 21 (247)
T ss_pred CCeEEEEECcCCCcCCCC
Confidence 356789999999998753
No 80
>PLN02423 phosphomannomutase
Probab=96.08 E-value=0.02 Score=40.81 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=15.5
Q ss_pred cCCCCceEEEeCCCeeeeeec
Q 040601 3 YRQKKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~ 23 (97)
-++.|..+++||||||+.+..
T Consensus 3 ~~~~~~i~~~D~DGTLl~~~~ 23 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTAPRK 23 (245)
T ss_pred CCccceEEEEeccCCCcCCCC
Confidence 345556667999999997753
No 81
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.07 E-value=0.013 Score=39.43 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=35.2
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+..+||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g 118 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN 118 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC
Confidence 568999999999994 689999999999999999998763
No 82
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.06 E-value=0.011 Score=40.24 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=35.2
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.++|+.+.+.+.++|.|++.+.+++.+++.++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~g 105 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLG 105 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcC
Confidence 4567899999999996559999999999999999988764
No 83
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.04 E-value=0.012 Score=38.91 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.++++.+ +..+.++|.|++.+.|++++++.+.
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g 111 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLG 111 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 355799999999999 5679999999999999999998753
No 84
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.01 E-value=0.012 Score=41.03 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=35.5
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+.++||+.+|++.+.+...++|-|++...+++++++.+.
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lg 105 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLG 105 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcC
Confidence 468999999999997778999999999999999998865
No 85
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.00 E-value=0.012 Score=40.37 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.0
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
++.++||+.++|+.+. +.+.++|.|++.+.++...++.++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~ 132 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLG 132 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCC
Confidence 4678999999999996 469999999999999998887664
No 86
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=95.88 E-value=0.013 Score=41.46 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=30.7
Q ss_pred EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc----h
Q 040601 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI----R 84 (97)
Q Consensus 10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~----~ 84 (97)
+++|+||||+.+.. .-|++.++++.+. +.+.+.+.||+. .
T Consensus 1 ~lfD~DGvL~~~~~-----------------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~ 45 (236)
T TIGR01460 1 FLFDIDGVLWLGHK-----------------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEE 45 (236)
T ss_pred CEEeCcCccCcCCc-----------------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 47999999998743 1246667777773 456777776544 4
Q ss_pred HHHHHHHH
Q 040601 85 SYAVMMAK 92 (97)
Q Consensus 85 ~YA~~v~~ 92 (97)
++++.+.+
T Consensus 46 ~~~~~l~~ 53 (236)
T TIGR01460 46 DYAEKLSS 53 (236)
T ss_pred HHHHHHHH
Confidence 44444444
No 87
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=95.87 E-value=0.0088 Score=42.39 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=16.3
Q ss_pred CCCceEEEeCCCeeeeeeccC
Q 040601 5 QKKLHLVLDLDHTLLHAVDID 25 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~ 25 (97)
.+|..|+||+||||+-....|
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p 21 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDP 21 (244)
T ss_pred CCcEEEEEecCccccCCcCCC
Confidence 367889999999999754433
No 88
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.80 E-value=0.032 Score=41.49 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.1
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
+.+++||||||+.+..
T Consensus 2 KLIftDLDGTLLd~~~ 17 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF 17 (302)
T ss_pred cEEEEeCCCCCcCCCC
Confidence 5789999999997543
No 89
>PLN02887 hydrolase family protein
Probab=95.79 E-value=0.03 Score=44.99 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCCceEEEeCCCeeeeee
Q 040601 4 RQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~ 22 (97)
..+.+.+++||||||+.+.
T Consensus 305 ~~~iKLIa~DLDGTLLn~d 323 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNSK 323 (580)
T ss_pred ccCccEEEEeCCCCCCCCC
Confidence 3456789999999999874
No 90
>PLN02954 phosphoserine phosphatase
Probab=95.69 E-value=0.023 Score=39.17 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=34.7
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..++||+.++|+.+ .+.+.++|.|++.+.+++.+++.+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~g 122 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILG 122 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhC
Confidence 45789999999999 5678999999999999999998763
No 91
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=95.63 E-value=0.026 Score=38.71 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=35.3
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+...||+.++|+.+. +.+.++|.|++.+.+++.+++.++
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~g 120 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTG 120 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 4678899999999995 579999999999999999988753
No 92
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.57 E-value=0.037 Score=38.33 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
+..+.|+||.||||+--... .+... + -..+.||+.+-|..+ ...|.++|+||.
T Consensus 3 ~~~k~lflDRDGtin~d~~~-yv~~~-~-----------------------~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 3 KDQKALFLDRDGTINIDKGD-YVDSL-D-----------------------DFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CCCcEEEEcCCCceecCCCc-ccCcH-H-----------------------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 34789999999999865431 11221 0 123789999999999 578999999994
No 93
>PRK09449 dUMP phosphatase; Provisional
Probab=95.56 E-value=0.025 Score=38.97 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=34.4
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.|.+.+.++|.||+.+.+++.+++.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~ 131 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERT 131 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhC
Confidence 56899999999999888999999999999999987764
No 94
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=95.54 E-value=0.021 Score=43.16 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=38.4
Q ss_pred eEEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh-C
Q 040601 53 ELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL-D 95 (97)
Q Consensus 53 ~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L-D 95 (97)
..-|+.+-||+.++|+++ +....+.|-||+...|++.+++.+ +
T Consensus 179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 345888999999999999 467999999999999999999986 5
No 95
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.53 E-value=0.025 Score=40.76 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=35.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.++|+.+. ..+.++|.|++.+.+++.+++.++
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g 147 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVG 147 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcC
Confidence 3567999999999995 679999999999999999988653
No 96
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.50 E-value=0.025 Score=40.16 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+...||+.++|+.| ++.+.++|.|++.+.+++.+++.++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g 146 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLG 146 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC
Confidence 467889999999999 5789999999999999999998764
No 97
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=95.49 E-value=0.028 Score=38.34 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=35.4
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+...||+.++|+++. +.+.++|.|++.+.+++.+++.++
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~ 113 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALG 113 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcC
Confidence 4678999999999994 689999999999999999888754
No 98
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.44 E-value=0.038 Score=40.29 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhc-ceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKM-YEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~-~ei~i~T~~ 82 (97)
+.+++.+|+|||||++..+.-. . +.......++ +..+.-=-..---+.=||+.|||+.+.++ -.|.--|+-
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yq---g----y~v~nnk~f~-pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR 147 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQ---G----YQVLNNKGFT-PETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNR 147 (274)
T ss_pred cCCCceEEEecchHhhcCcccc---c----hhhhcCCCCC-ccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEecc
Confidence 4577899999999999886432 1 1111000000 00000000001234569999999999544 444443443
No 99
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.42 E-value=0.05 Score=44.56 Aligned_cols=19 Identities=42% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCCceEEEeCCCeeeeeec
Q 040601 5 QKKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~ 23 (97)
++++.++.||||||++...
T Consensus 414 ~~~KLIfsDLDGTLLd~d~ 432 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT 432 (694)
T ss_pred ceeeEEEEECcCCCcCCCC
Confidence 4678899999999998743
No 100
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.40 E-value=0.03 Score=38.46 Aligned_cols=39 Identities=18% Similarity=0.019 Sum_probs=35.3
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..+.||+.++|+.+ ++.+.++|.|++.+.+++.+++.++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~ 125 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG 125 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh
Confidence 57999999999999 5789999999999999999998664
No 101
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=95.32 E-value=0.036 Score=37.53 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
...+||+.++++.+ ++.+.++|.|++...+++++++.+.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg 125 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG 125 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence 45899999999999 4679999999999999999998764
No 102
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=95.21 E-value=0.035 Score=37.56 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=33.7
Q ss_pred EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.+.+ .+.++|.|++...+++.+++.+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~ 129 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA 129 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC
Confidence 4678999999999976 5999999999999999988764
No 103
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.20 E-value=0.039 Score=37.81 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=35.4
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
....+||+.++|+.+. +.+.++|.|++...+++.+++.++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 131 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALG 131 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 3678999999999996 579999999999999999988754
No 104
>PTZ00445 p36-lilke protein; Provisional
Probab=95.18 E-value=0.018 Score=41.01 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=43.5
Q ss_pred cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeC
Q 040601 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTT 81 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~ 81 (97)
.+.+=+.+++|+|.|||-.-.. ++... .+ ....+.-..+|.+.++++.+. ..+.|+|-|-
T Consensus 39 ~~~GIk~Va~D~DnTlI~~Hsg----G~~~~--~~-------------~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 39 NECGIKVIASDFDLTMITKHSG----GYIDP--DN-------------DDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHcCCeEEEecchhhhhhhhcc----cccCC--Cc-------------chhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3456678999999999853211 11000 00 012234568999999999995 6899999999
Q ss_pred CchHH
Q 040601 82 GIRSY 86 (97)
Q Consensus 82 ~~~~Y 86 (97)
+.+.-
T Consensus 100 Sd~~~ 104 (219)
T PTZ00445 100 SDKEL 104 (219)
T ss_pred cchhh
Confidence 98754
No 105
>PLN03017 trehalose-phosphatase
Probab=95.14 E-value=0.052 Score=41.41 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=15.0
Q ss_pred cCCCCceEEEeCCCeee
Q 040601 3 YRQKKLHLVLDLDHTLL 19 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLv 19 (97)
.+.++..|+||+||||+
T Consensus 107 ~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLS 123 (366)
T ss_pred hcCCCeEEEEecCCcCc
Confidence 45678999999999999
No 106
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.13 E-value=0.048 Score=37.21 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=34.7
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+..+||+.++|+++.+.+.++|-|++.+.+++.+++.+
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~ 133 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKS 133 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHC
Confidence 367899999999999766999999999999999988764
No 107
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.05 E-value=0.036 Score=42.80 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=35.6
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+.++||+.++|+.+ ++.+.++|.|++.+.+++.+++.++
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~ 368 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYD 368 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCC
Confidence 357789999999999 5679999999999999999998764
No 108
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.04 E-value=0.055 Score=38.23 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=12.2
Q ss_pred CceEEEeCCCeeee
Q 040601 7 KLHLVLDLDHTLLH 20 (97)
Q Consensus 7 k~~LVLDLDeTLvh 20 (97)
++.++.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 46789999999996
No 109
>PRK11590 hypothetical protein; Provisional
Probab=94.97 E-value=0.046 Score=37.84 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=33.1
Q ss_pred EEecchHHHHH-HHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFL-KEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL-~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+..+||+.+.| +.+. +.+.++|.|++.+.|+++++..+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l 133 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT 133 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc
Confidence 45699999999 5675 68999999999999999998764
No 110
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=94.93 E-value=0.021 Score=40.53 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhh-hCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMK-LGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
.++..+|||+|||++.++... .. ..... ... ...-..+...+.. ..=||+.+|++.+ +..++|++-|+=
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~---~~--~~~~~~~~~-~~~w~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~R 140 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYY---AY--LIFGGESFS-PEDWDEWVASGKA---PAIPGALELYNYARSRGVKVFFITGR 140 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHH---HH--HHHHTHHH--CCHHHHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHHH---HH--HhhccCCCC-hHHHHHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEecC
Confidence 578999999999999553310 00 00000 000 0000000000111 3558899999999 577999988875
Q ss_pred chH
Q 040601 83 IRS 85 (97)
Q Consensus 83 ~~~ 85 (97)
...
T Consensus 141 ~~~ 143 (229)
T PF03767_consen 141 PES 143 (229)
T ss_dssp ETT
T ss_pred Cch
Confidence 554
No 111
>PLN02151 trehalose-phosphatase
Probab=94.92 E-value=0.064 Score=40.74 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI 83 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~ 83 (97)
+.++..|+||+||||+--...|. -+..-|.+.+-|+.|++.+.++|-|--.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~-----------------------------~A~~~~~~~~aL~~La~~~~vaIvSGR~ 145 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPD-----------------------------RAFMSKKMRNTVRKLAKCFPTAIVSGRC 145 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcc-----------------------------cccCCHHHHHHHHHHhcCCCEEEEECCC
Confidence 45789999999999994332221 1224466666666666666666666555
Q ss_pred hHHHHHHH
Q 040601 84 RSYAVMMA 91 (97)
Q Consensus 84 ~~YA~~v~ 91 (97)
..-++.++
T Consensus 146 ~~~l~~~~ 153 (354)
T PLN02151 146 REKVSSFV 153 (354)
T ss_pred HHHHHHHc
Confidence 55444443
No 112
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=94.91 E-value=0.049 Score=36.09 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=34.8
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+.++||+.++|+.+. ..+.++|.|++...+++.+++.++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 110 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIG 110 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcC
Confidence 689999999999995 579999999999999999988753
No 113
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=94.84 E-value=0.054 Score=35.68 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.2
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHH
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~ 92 (97)
+...||+.++|+.+. ..+.++|.|++...+ ..+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~ 119 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQ 119 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHH
Confidence 678999999999995 579999999999988 55554
No 114
>PRK11587 putative phosphatase; Provisional
Probab=94.71 E-value=0.061 Score=37.14 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=33.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+...||+.++|+.|. +.+.++|.|++...++..+++..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~ 120 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA 120 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc
Confidence 4578999999999994 78999999999999887776543
No 115
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.085 Score=38.59 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=42.1
Q ss_pred cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcce--EEEEe
Q 040601 3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYE--IYLCT 80 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~e--i~i~T 80 (97)
.+.+|..++||.||||.+-...|.. +..-+++.+.|+.|+..+. ++|.|
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~~-----------------------------a~~~~~l~~lL~~Las~~~~~v~iiS 64 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPEA-----------------------------AVPDDRLLSLLQDLASDPRNVVAIIS 64 (266)
T ss_pred ccccceEEEEeccccccccccCccc-----------------------------cCCCHHHHHHHHHHHhcCCCeEEEEe
Confidence 4678999999999999998776521 1234667777777777766 66666
Q ss_pred CCchHHHHHHHH
Q 040601 81 TGIRSYAVMMAK 92 (97)
Q Consensus 81 ~~~~~YA~~v~~ 92 (97)
--+.+-.+..+.
T Consensus 65 GR~~~~l~~~~~ 76 (266)
T COG1877 65 GRSLAELERLFG 76 (266)
T ss_pred CCCHHHHHHhcC
Confidence 655555554443
No 116
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=94.70 E-value=0.06 Score=37.70 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=33.9
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.+. +.+.++|.|++.+.+++..++.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~ 130 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT 130 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC
Confidence 578899999999995 57999999999999999988764
No 117
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.62 E-value=0.061 Score=39.16 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=34.0
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.+. +.+.++|.|++...+++.+++.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 578999999999995 67999999999999999988754
No 118
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=94.48 E-value=0.07 Score=38.76 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=35.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+...||+.++|+.|. +.+.++|.|++.+.+++.+++.++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~g 180 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQG 180 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 3467899999999995 679999999999999999998764
No 119
>PLN02580 trehalose-phosphatase
Probab=94.38 E-value=0.11 Score=39.95 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI 83 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~ 83 (97)
+.++..|+||.||||.--...|. -+..-|++++-|++|++.+.++|-|--.
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~Pd-----------------------------~A~~s~~~~~aL~~La~~~~VAIVSGR~ 166 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDPD-----------------------------RALMSDAMRSAVKNVAKYFPTAIISGRS 166 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCcc-----------------------------cccCCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 56788999999999985443331 1335578888888888888888888777
Q ss_pred hHHHHHHHH
Q 040601 84 RSYAVMMAK 92 (97)
Q Consensus 84 ~~YA~~v~~ 92 (97)
..-.+..+.
T Consensus 167 ~~~L~~~l~ 175 (384)
T PLN02580 167 RDKVYELVG 175 (384)
T ss_pred HHHHHHHhC
Confidence 766665553
No 120
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=94.36 E-value=0.075 Score=37.11 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=32.7
Q ss_pred EEecchHHHHHH-HHh-hcceEEEEeCCchHHHHHHHHh
Q 040601 57 VKLRPYIRKFLK-EAS-KMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 57 v~~RP~~~~FL~-~ls-~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
+..+||+.+.|+ .+. +...++|.|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 357999999996 776 6999999999999999999865
No 121
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=94.35 E-value=0.06 Score=36.06 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=32.6
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+...||+.++|++|. +.++|.|++.+.++..+++.++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~g 119 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLG 119 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcC
Confidence 457899999999997 6899999999999999988753
No 122
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.33 E-value=0.024 Score=37.88 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=31.6
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+...|+ .+.|+.+.+.+.++|.|++.+.+++.+++.+.
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~ 124 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLG 124 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCC
Confidence 445676 48999998778999999999999999988653
No 123
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.20 E-value=0.091 Score=37.17 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=34.2
Q ss_pred EEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601 55 FLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 55 ~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
....+.||+.++|+++ ++.+.++|+|+++....+.+++..
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 3456899999999999 578999999999999988887653
No 124
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.091 Score=37.01 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=35.1
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
-++++||.++|.+++ ++.-.++|-++|...|.+++++.|
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~i 110 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI 110 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence 478999999999999 567899999999999999998765
No 125
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.09 E-value=0.1 Score=36.67 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..++||+.+.++.+ +..+.++|.|+|...++++|.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg 115 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLG 115 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhC
Confidence 88999999999999 5779999999999999999998875
No 126
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=94.05 E-value=0.094 Score=40.18 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=34.8
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
+...||+.+||+.| ...+.++|.|++.+.+++.+++.++
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lg 254 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIG 254 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 46789999999999 5679999999999999999998754
No 127
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=94.02 E-value=0.14 Score=33.14 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=33.1
Q ss_pred EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHh
Q 040601 56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
.....||+.++|+.+ ++.+.++|.|++.+..++.+++.
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~ 100 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK 100 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH
Confidence 344569999999999 56799999999999999998876
No 128
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=94.01 E-value=0.033 Score=37.88 Aligned_cols=37 Identities=14% Similarity=-0.025 Sum_probs=31.3
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..|+..++|+.+. +.+.++|.|++.+.+++.+++.+.
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~g 144 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHG 144 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcC
Confidence 4556699999996 579999999999999999988653
No 129
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=94.01 E-value=0.12 Score=36.08 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=34.7
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+..+||+.++|+.|. +.+.++|.|++...++..+++.++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~ 133 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLG 133 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 4678999999999995 568999999999999998887653
No 130
>PRK11587 putative phosphatase; Provisional
Probab=93.83 E-value=0.03 Score=38.69 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
...+++|+||||+.|..
T Consensus 3 ~k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 3 CKGFLFDLDGTLVDSLP 19 (218)
T ss_pred CCEEEEcCCCCcCcCHH
Confidence 35799999999999953
No 131
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.77 E-value=0.13 Score=42.02 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCCCceEEEeCCCeeeeee
Q 040601 4 RQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~ 22 (97)
+.++..+++|+||||+-..
T Consensus 489 ~~~~rLi~~D~DGTL~~~~ 507 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFA 507 (726)
T ss_pred hccceEEEEecCccccCCC
Confidence 4567899999999999653
No 132
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=93.75 E-value=0.04 Score=38.09 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=34.1
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+.+.||+.++|+.+. +.+.++|.|++.+..++.+++.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~ 129 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF 129 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC
Confidence 568899999999995 67999999999999999998764
No 133
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=93.63 E-value=0.12 Score=35.68 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=17.4
Q ss_pred CCcCCCCceEEEeCCCeeeeee
Q 040601 1 MVYRQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 1 ~ll~~~k~~LVLDLDeTLvhs~ 22 (97)
|.-+.+-..+++|+||||+++.
T Consensus 1 ~~~~~~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 1 MSTPRQILAAIFDMDGLLIDSE 22 (222)
T ss_pred CCCcccCcEEEEcCCCCCCcCH
Confidence 3345567889999999999884
No 134
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=93.63 E-value=0.12 Score=34.29 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.6
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.+. ..+.++|.|++ .+++.+++.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~ 123 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL 123 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc
Confidence 678999999999995 57999999988 7788887754
No 135
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=93.60 E-value=0.63 Score=34.30 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=22.5
Q ss_pred ecchHHHHHHHH-hhcceEEEEeCCchHHHHH
Q 040601 59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVM 89 (97)
Q Consensus 59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~ 89 (97)
.=|++.+|.+.+ +..+.|++-|+=....-+.
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~a 177 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAV 177 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHH
Confidence 447888888888 5788888888776554443
No 136
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.59 E-value=0.043 Score=37.16 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=27.5
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHH
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~ 92 (97)
.+...||+.++|++|.+.+.+++.|++.........+
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~ 108 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNR 108 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHh
Confidence 4568999999999998777787778776554443443
No 137
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=93.56 E-value=0.14 Score=36.88 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=33.8
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+..+||+.++|+.+. +.+.++|.|++...+++.+++.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~ 138 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM 138 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc
Confidence 567999999999995 67999999999999999988764
No 138
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.53 E-value=0.11 Score=35.81 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=32.6
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+...||+.++|+.+. +.++|.|++.+.+++.+++..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~ 122 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKT 122 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhc
Confidence 4677899999999994 899999999999999988754
No 139
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=93.35 E-value=0.043 Score=37.66 Aligned_cols=17 Identities=29% Similarity=0.467 Sum_probs=14.4
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
...+++|+||||+++..
T Consensus 3 ~~~viFD~DGTL~ds~~ 19 (214)
T PRK13288 3 INTVLFDLDGTLINTNE 19 (214)
T ss_pred ccEEEEeCCCcCccCHH
Confidence 45789999999999853
No 140
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=93.29 E-value=0.17 Score=33.63 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=30.1
Q ss_pred chHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 61 PYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 61 P~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
|++.+|++.+ ++.++++|-|++...+++++++.+.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~ 127 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLG 127 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 4444999998 7899999999999999999997653
No 141
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.23 E-value=0.04 Score=36.91 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.3
Q ss_pred eEEEeCCCeeeeee
Q 040601 9 HLVLDLDHTLLHAV 22 (97)
Q Consensus 9 ~LVLDLDeTLvhs~ 22 (97)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 57999999999874
No 142
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.15 E-value=0.37 Score=34.93 Aligned_cols=24 Identities=38% Similarity=0.260 Sum_probs=18.4
Q ss_pred CCcCCCCceEEEeCCCeeeeeecc
Q 040601 1 MVYRQKKLHLVLDLDHTLLHAVDI 24 (97)
Q Consensus 1 ~ll~~~k~~LVLDLDeTLvhs~~~ 24 (97)
|+-.+-.+.+.+|||+|||-.+.+
T Consensus 1 m~s~~~~~lIFtDlD~TLl~~~ye 24 (274)
T COG3769 1 MFSIQMPLLIFTDLDGTLLPHSYE 24 (274)
T ss_pred CCccccceEEEEcccCcccCCCCC
Confidence 455667889999999999974443
No 143
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=93.09 E-value=0.06 Score=38.82 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.8
Q ss_pred CCCceEEEeCCCeeeeee
Q 040601 5 QKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~ 22 (97)
..-+.+++|+||||+.|.
T Consensus 22 ~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred CCceEEEEeCCCceeCCc
Confidence 345678999999999984
No 144
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=93.09 E-value=0.055 Score=37.15 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.6
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.+..
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
Confidence 4789999999999853
No 145
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=93.08 E-value=0.44 Score=37.94 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=35.6
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.-..||++.++++++. ..++++|.|+..+.+|+.+++.+.
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lg 443 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELG 443 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcC
Confidence 4468999999999995 579999999999999999998764
No 146
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.98 E-value=0.052 Score=43.01 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
...|++||||||+||.-...- ..+ -.-+.-.++.. |.. ---..+|...+ .+.+=+.|++-+
T Consensus 219 g~~kK~LVLDLDNTLWGGVIG----edG-v~GI~Ls~~~~--------G~~-----fk~fQ~~Ik~l~kqGVlLav~SKN 280 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVIG----EDG-VDGIRLSNSAE--------GEA-----FKTFQNFIKGLKKQGVLLAVCSKN 280 (574)
T ss_pred CcccceEEEecCCcccccccc----ccc-ccceeecCCCC--------chh-----HHHHHHHHHHHHhccEEEEEecCC
Confidence 567899999999999876532 110 00000000000 000 01145566666 356667777777
Q ss_pred chHHHHHHHH
Q 040601 83 IRSYAVMMAK 92 (97)
Q Consensus 83 ~~~YA~~v~~ 92 (97)
...=|+.+..
T Consensus 281 ~~~da~evF~ 290 (574)
T COG3882 281 TEKDAKEVFR 290 (574)
T ss_pred chhhHHHHHh
Confidence 7777766653
No 147
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=92.90 E-value=0.053 Score=37.88 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=14.0
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
...+++|+||||+.|.
T Consensus 12 ~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 12 PRAVLFDLDGTLLDSA 27 (229)
T ss_pred CCEEEEcCcCccccCH
Confidence 4579999999999994
No 148
>PRK11590 hypothetical protein; Provisional
Probab=92.87 E-value=0.066 Score=37.07 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.9
Q ss_pred CCCceEEEeCCCeeeee
Q 040601 5 QKKLHLVLDLDHTLLHA 21 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs 21 (97)
..++.+++|+||||++.
T Consensus 4 ~~~k~~iFD~DGTL~~~ 20 (211)
T PRK11590 4 HERRVVFFDLDGTLHQQ 20 (211)
T ss_pred ccceEEEEecCCCCccc
Confidence 35668999999999944
No 149
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=92.83 E-value=0.071 Score=36.14 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=29.6
Q ss_pred EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
....||+.++|+.+. ..+.++|.||+.+.. ..+++.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~ 141 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEAL 141 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHC
Confidence 367899999999996 469999999998764 6666543
No 150
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=92.81 E-value=0.053 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.8
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999999854
No 151
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=92.80 E-value=0.052 Score=39.16 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.3
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
++.+++|+||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 5689999999999994
No 152
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=92.77 E-value=0.23 Score=34.53 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=35.3
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
...-||+.+.|..+ ++.|.++|.|+.....++.+++.++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~g 127 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALG 127 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhC
Confidence 57899999999999 5789999999999999999998753
No 153
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=92.36 E-value=0.089 Score=36.00 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=15.5
Q ss_pred CCcCCCCceEEEeCCCeeeeee
Q 040601 1 MVYRQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 1 ~ll~~~k~~LVLDLDeTLvhs~ 22 (97)
|-+.. -..+++|+||||+++.
T Consensus 1 ~~~~~-~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 1 MKFMD-IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CCCCc-CcEEEEcCCcccccCH
Confidence 33444 3478999999999884
No 154
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.31 E-value=0.64 Score=31.13 Aligned_cols=42 Identities=26% Similarity=0.193 Sum_probs=36.5
Q ss_pred EEEEEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601 54 LFLVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 54 ~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
...-.+||++.++|++|.+ .+.++|.|......|..+++.+.
T Consensus 123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lg 165 (215)
T PF00702_consen 123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLG 165 (215)
T ss_dssp EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT
T ss_pred eecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccc
Confidence 3455789999999999965 59999999999999999998764
No 155
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=92.29 E-value=0.081 Score=36.85 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.3
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
...++++|+||||+.|..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 356899999999999964
No 156
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=92.22 E-value=0.061 Score=39.05 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.4
Q ss_pred CCceEEEeCCCeeeeee
Q 040601 6 KKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~ 22 (97)
....+++|+||||+.|.
T Consensus 61 ~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hcCEEEECCcCccccCH
Confidence 34579999999999995
No 157
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=92.22 E-value=0.065 Score=35.53 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=13.8
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.+..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 4689999999999964
No 158
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=92.17 E-value=0.31 Score=33.00 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.9
Q ss_pred eEEEeCCCeeeeeec
Q 040601 9 HLVLDLDHTLLHAVD 23 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~ 23 (97)
.+++|+||||+.|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999853
No 159
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=92.13 E-value=0.062 Score=34.78 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=12.5
Q ss_pred eEEEeCCCeeeeee
Q 040601 9 HLVLDLDHTLLHAV 22 (97)
Q Consensus 9 ~LVLDLDeTLvhs~ 22 (97)
++++|+||||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 160
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=92.11 E-value=0.078 Score=37.11 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.8
Q ss_pred CCceEEEeCCCeeeee
Q 040601 6 KKLHLVLDLDHTLLHA 21 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs 21 (97)
+-+.+++||||||+.+
T Consensus 9 ~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 9 DVDTVLLDMDGTLLDL 24 (224)
T ss_pred cCCEEEEcCCCCccch
Confidence 4567999999999996
No 161
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=92.01 E-value=0.07 Score=37.81 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.9
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 5789999999999853
No 162
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=91.75 E-value=0.12 Score=37.65 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCceEEEeCCCeeeeee
Q 040601 6 KKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~ 22 (97)
+-..+|+|+||||+.|.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34579999999999997
No 163
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=91.70 E-value=0.07 Score=35.38 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=27.5
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...||+.++|+.| +..+.++|.|++.. +..+++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~ 122 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL 122 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc
Confidence 46789999999999 46799999998643 45555544
No 164
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=91.70 E-value=0.059 Score=36.71 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.6
Q ss_pred EEEeCCCeeeeee
Q 040601 10 LVLDLDHTLLHAV 22 (97)
Q Consensus 10 LVLDLDeTLvhs~ 22 (97)
+++||||||+.|.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999984
No 165
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.66 E-value=0.34 Score=33.10 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=33.9
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+...|++.++|+.+...|.++|.|||...++...+..+
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~ 135 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQL 135 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHc
Confidence 68889999999999766999999999999999888754
No 166
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=91.60 E-value=1.7 Score=29.48 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=40.0
Q ss_pred CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchH-HHHHHHHhhcceEEEEeCCchH
Q 040601 7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYI-RKFLKEASKMYEIYLCTTGIRS 85 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~-~~FL~~ls~~~ei~i~T~~~~~ 85 (97)
-+.+|+|.||+|-..+..- .+.+ .....+..|-|. -..|+ ...+.++|.|++...
T Consensus 7 i~~~v~d~dGv~tdg~~~~--~~~g--------------------~~~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~ 62 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVI--NDEG--------------------IESRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSG 62 (169)
T ss_pred CeEEEEeCceeeECCeEEE--cCCC--------------------cEEEEEecchHHHHHHHH--HCCCEEEEEECCCcH
Confidence 4678999999998664311 1110 011123344443 22222 457899999999999
Q ss_pred HHHHHHHhhC
Q 040601 86 YAVMMAKLLD 95 (97)
Q Consensus 86 YA~~v~~~LD 95 (97)
+++.+++.+.
T Consensus 63 ~~~~~l~~lg 72 (169)
T TIGR02726 63 AVRHRAEELK 72 (169)
T ss_pred HHHHHHHHCC
Confidence 9999888763
No 167
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=91.54 E-value=0.087 Score=34.66 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.6
Q ss_pred eEEEeCCCeeeeeec
Q 040601 9 HLVLDLDHTLLHAVD 23 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~ 23 (97)
.+++||||||+.+..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999943
No 168
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=91.51 E-value=0.092 Score=36.94 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.2
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCchH
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGIRS 85 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~ 85 (97)
+...||+.++|+.|.+.+.++|.||+...
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~ 140 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ 140 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch
Confidence 55679999999999877999999998754
No 169
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=91.24 E-value=0.072 Score=36.20 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.5
Q ss_pred EEEeCCCeeeeee
Q 040601 10 LVLDLDHTLLHAV 22 (97)
Q Consensus 10 LVLDLDeTLvhs~ 22 (97)
+|+|+||||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999874
No 170
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.07 E-value=0.11 Score=35.44 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.7
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.+..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 4689999999999854
No 171
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=91.02 E-value=0.11 Score=35.20 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.0
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
+.+++|+||||+.+.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 368999999999875
No 172
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=91.00 E-value=0.1 Score=34.45 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=28.3
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+..+||+.++|+. ++|.||+.+.+++.+++.+
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~ 120 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQA 120 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHC
Confidence 35689999999983 7899999999999988764
No 173
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=90.95 E-value=0.1 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.3
Q ss_pred EEEeCCCeeeeeec
Q 040601 10 LVLDLDHTLLHAVD 23 (97)
Q Consensus 10 LVLDLDeTLvhs~~ 23 (97)
+++|+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999865
No 174
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=90.94 E-value=0.14 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHH
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSY 86 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~Y 86 (97)
.+...||+.++|+.|. +.+.++|.||+....
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~ 123 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTD 123 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 4668999999999995 579999999987644
No 175
>PLN02940 riboflavin kinase
Probab=90.89 E-value=0.35 Score=36.75 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=32.2
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHH
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~ 92 (97)
+...||+.++|+.| +..+.++|.|++.+.+++.+++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~ 128 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKIS 128 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH
Confidence 46789999999999 5679999999999999998775
No 176
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=90.81 E-value=0.42 Score=33.32 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=31.2
Q ss_pred EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEE--EecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLV--KLRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
++.||||||+++.. .+++. ...... ...... -..+ +..+.++++++.+. +....+|..+|..
T Consensus 2 i~~DlDgTLl~~~~--~~~~~--~~~~~~---~~~gi~------~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~ 66 (236)
T TIGR02471 2 IITDLDNTLLGDDE--GLASF--VELLRG---SGDAVG------FGIATGRSVESAKSRYAKLNLPSPDVLIARVGTE 66 (236)
T ss_pred eEEeccccccCCHH--HHHHH--HHHHHh---cCCCce------EEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCce
Confidence 78999999998532 22222 111110 111111 1223 34456888887774 2334466666654
No 177
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=90.57 E-value=0.44 Score=31.70 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
+...+++|+||||+.|..
T Consensus 4 ~~~~viFD~DGTLiDs~~ 21 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEP 21 (188)
T ss_pred cceEEEEcCCCcCccCHH
Confidence 456789999999999853
No 178
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=90.53 E-value=0.51 Score=37.42 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=36.8
Q ss_pred EEEEEecchHHHHHHHHh-hc-ceEEEEeCCchHHHHHHHHhhC
Q 040601 54 LFLVKLRPYIRKFLKEAS-KM-YEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 54 ~~~v~~RP~~~~FL~~ls-~~-~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+.-..|||+.+.|+++. .. ++++|.|+..+.+|+.+++.++
T Consensus 380 ~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lg 423 (556)
T TIGR01525 380 ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELG 423 (556)
T ss_pred EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhC
Confidence 334579999999999994 57 9999999999999999998875
No 179
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=90.48 E-value=0.65 Score=31.36 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=12.5
Q ss_pred eEEEeCCCeeeeee
Q 040601 9 HLVLDLDHTLLHAV 22 (97)
Q Consensus 9 ~LVLDLDeTLvhs~ 22 (97)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999874
No 180
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=90.45 E-value=0.16 Score=34.03 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=13.1
Q ss_pred CceEEEeCCCeeeee
Q 040601 7 KLHLVLDLDHTLLHA 21 (97)
Q Consensus 7 k~~LVLDLDeTLvhs 21 (97)
.+.+|+|+||||+.+
T Consensus 4 ~k~viFD~DGTLid~ 18 (201)
T TIGR01491 4 IKLIIFDLDGTLTDV 18 (201)
T ss_pred ceEEEEeCCCCCcCC
Confidence 457999999999985
No 181
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=90.30 E-value=0.15 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.5
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
|..+|+|+||||+....
T Consensus 1 ~~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDS 17 (188)
T ss_pred CeEEEEeCCCcccCCCc
Confidence 57899999999998754
No 182
>PRK09449 dUMP phosphatase; Provisional
Probab=90.20 E-value=0.13 Score=35.31 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.6
Q ss_pred CceEEEeCCCeeeee
Q 040601 7 KLHLVLDLDHTLLHA 21 (97)
Q Consensus 7 k~~LVLDLDeTLvhs 21 (97)
-..+++||||||++.
T Consensus 3 ~k~iiFDlDGTLid~ 17 (224)
T PRK09449 3 YDWILFDADETLFHF 17 (224)
T ss_pred ccEEEEcCCCchhcc
Confidence 357999999999963
No 183
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=89.38 E-value=1.1 Score=30.41 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHHH
Q 040601 9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYA 87 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA 87 (97)
.+|-|+|||+--|-..-++.+ .-+.. +.+||+.++.+.+. +.|.++=-|+-.-..|
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~--------------------~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa 57 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILP--------------------ILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQA 57 (157)
T ss_pred CEEEeccCCcCccchhhhhhh--------------------ccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHH
Confidence 378999999988842111000 00111 46777777777774 5566655555544444
Q ss_pred HHH
Q 040601 88 VMM 90 (97)
Q Consensus 88 ~~v 90 (97)
+..
T Consensus 58 ~~T 60 (157)
T PF08235_consen 58 NRT 60 (157)
T ss_pred HHH
Confidence 433
No 184
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=89.20 E-value=0.19 Score=34.51 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.2
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
...+++|+||||+.+..
T Consensus 4 ~~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEV 20 (221)
T ss_pred CCEEEECCCCCCCCChH
Confidence 46789999999998743
No 185
>PLN02954 phosphoserine phosphatase
Probab=89.10 E-value=0.22 Score=34.22 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.7
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
..+.+++|+||||+.+..
T Consensus 11 ~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG 28 (224)
T ss_pred cCCEEEEeCCCcccchHH
Confidence 357889999999998743
No 186
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=88.85 E-value=0.22 Score=33.71 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.7
Q ss_pred ceEEEeCCCeeeee
Q 040601 8 LHLVLDLDHTLLHA 21 (97)
Q Consensus 8 ~~LVLDLDeTLvhs 21 (97)
..+++|+||||+..
T Consensus 2 ~~v~FD~DGTL~~~ 15 (205)
T PRK13582 2 EIVCLDLEGVLVPE 15 (205)
T ss_pred eEEEEeCCCCChhh
Confidence 36899999999953
No 187
>PHA02597 30.2 hypothetical protein; Provisional
Probab=88.77 E-value=0.66 Score=31.27 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.7
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
.+.+++||||||+.+.
T Consensus 2 ~k~viFDlDGTLiD~~ 17 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ 17 (197)
T ss_pred CcEEEEecCCceEchh
Confidence 4679999999999964
No 188
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=88.71 E-value=0.19 Score=35.17 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=33.6
Q ss_pred EEEecchHHHHHHHHhhc-ceEEEEeCCchHHHHHHHHhh
Q 040601 56 LVKLRPYIRKFLKEASKM-YEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~-~ei~i~T~~~~~YA~~v~~~L 94 (97)
-+...||+.+||+.|... .-+++.|++.+.-++.+++.+
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~ 123 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL 123 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc
Confidence 468999999999999654 999999999999998888654
No 189
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=88.63 E-value=0.81 Score=31.06 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=29.2
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHH
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMM 90 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v 90 (97)
+...+||+.++|+.+. +.+.++|.||+.+..+...
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~ 117 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFW 117 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHH
Confidence 4568999999999995 6799999999988765543
No 190
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=88.56 E-value=0.77 Score=36.32 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=36.2
Q ss_pred EEEEecchHHHHHHHHh-hcc-eEEEEeCCchHHHHHHHHhhC
Q 040601 55 FLVKLRPYIRKFLKEAS-KMY-EIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 55 ~~v~~RP~~~~FL~~ls-~~~-ei~i~T~~~~~YA~~v~~~LD 95 (97)
..-..|||+.+.++++. ..+ +++|.|+..+.+|+.+++.+.
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lg 401 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELG 401 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcC
Confidence 34578999999999995 578 999999999999999998864
No 191
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=88.49 E-value=1 Score=32.05 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=12.1
Q ss_pred CceEEEeCCCeee
Q 040601 7 KLHLVLDLDHTLL 19 (97)
Q Consensus 7 k~~LVLDLDeTLv 19 (97)
|+.|+-|||+||+
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6789999999999
No 192
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=88.49 E-value=0.54 Score=31.99 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.9
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
..+++||||||+.+.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999873
No 193
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=88.43 E-value=0.29 Score=37.53 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=15.1
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
+-+.+|+|+|||||.|..
T Consensus 130 ~~~~VIFDlDGTLIDS~~ 147 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNP 147 (381)
T ss_pred CCCEEEEcCcCcceeCHH
Confidence 456899999999998864
No 194
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=88.41 E-value=0.86 Score=30.07 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=12.8
Q ss_pred eEEEeCCCeeeeeec
Q 040601 9 HLVLDLDHTLLHAVD 23 (97)
Q Consensus 9 ~LVLDLDeTLvhs~~ 23 (97)
.+++|+||||+.+..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999864
No 195
>PLN02811 hydrolase
Probab=88.33 E-value=0.72 Score=31.85 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=28.3
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHH
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVM 89 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~ 89 (97)
.+...||+.++|+.|. ..+.++|-|++.+.++..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~ 110 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDL 110 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHH
Confidence 3567899999999995 579999999999876553
No 196
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=88.30 E-value=0.22 Score=38.52 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.8
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+.|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 5789999999999854
No 197
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=87.25 E-value=1 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.2
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
..+++|+|||||.|.
T Consensus 3 ~avIFD~DGvLvDse 17 (221)
T COG0637 3 KAVIFDMDGTLVDSE 17 (221)
T ss_pred cEEEEcCCCCcCcch
Confidence 468999999999994
No 198
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.01 E-value=1.6 Score=36.45 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=35.8
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh--cceEEEEeC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK--MYEIYLCTT 81 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~--~~ei~i~T~ 81 (97)
+.++..|+||.||||+.-...+. .+ .-+..-|++.+-|+.|++ .-.++|-|-
T Consensus 504 ~a~~rll~LDyDGTL~~~~~~~~-~p-------------------------~~a~p~~~l~~~L~~L~~d~~~~V~IvSG 557 (797)
T PLN03063 504 KSNNRLLILGFYGTLTEPRNSQI-KE-------------------------MDLGLHPELKETLKALCSDPKTTVVVLSR 557 (797)
T ss_pred hccCeEEEEecCccccCCCCCcc-cc-------------------------ccCCCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 45678899999999994332210 00 012234667777777753 345666665
Q ss_pred CchHHHHHHH
Q 040601 82 GIRSYAVMMA 91 (97)
Q Consensus 82 ~~~~YA~~v~ 91 (97)
-..+-.+..+
T Consensus 558 R~~~~L~~~~ 567 (797)
T PLN03063 558 SGKDILDKNF 567 (797)
T ss_pred CCHHHHHHHh
Confidence 5555555444
No 199
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.98 E-value=1.2 Score=38.36 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=33.2
Q ss_pred ecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||+.++|+.| ++.+.++|.|++.+.+++.+++.+.
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~g 199 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAG 199 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcC
Confidence 589999999999 5789999999999999999987653
No 200
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=85.94 E-value=0.43 Score=33.02 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=14.4
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
|.++++|+||||+.+..
T Consensus 3 ~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 3 SIQIFCDFDGTITNNDN 19 (219)
T ss_pred CcEEEEcCCCCCCcchh
Confidence 56899999999998754
No 201
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=85.89 E-value=0.44 Score=33.45 Aligned_cols=16 Identities=44% Similarity=0.542 Sum_probs=14.1
Q ss_pred CCCceEEEeCCCeeee
Q 040601 5 QKKLHLVLDLDHTLLH 20 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvh 20 (97)
..+..+|+|||+||+.
T Consensus 3 ~~~~L~vFD~D~TLi~ 18 (212)
T COG0560 3 RMKKLAVFDLDGTLIN 18 (212)
T ss_pred CccceEEEecccchhh
Confidence 4577889999999999
No 202
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=85.84 E-value=1.4 Score=31.86 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=33.4
Q ss_pred EEEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
-+..-||.-+.++.+++ .||++|-+.+..-+.+.+++..+
T Consensus 82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~ 123 (256)
T KOG3120|consen 82 SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAG 123 (256)
T ss_pred cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHcc
Confidence 45678999998888853 48999999999999999998753
No 203
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=85.66 E-value=4.5 Score=29.16 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=52.6
Q ss_pred CCceEEEeCCCeeeeeeccCccchhhHHHHhhh---CCCCCC--Ccee--ee---cceEEEEEecchHHHHHHHHh-hcc
Q 040601 6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKL---GSSSSD--GDLF--KM---AGELFLVKLRPYIRKFLKEAS-KMY 74 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--~~---~~~~~~v~~RP~~~~FL~~ls-~~~ 74 (97)
....+|+|+|+||+-+...-.-+.|....+..- ..+... ...+ .+ ....-....-|.+-++++.++ +..
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 567789999999997762212233421112110 010000 0111 00 012335567889999999996 679
Q ss_pred eEEEEeCCchHHHHHHHHhh
Q 040601 75 EIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 75 ei~i~T~~~~~YA~~v~~~L 94 (97)
-++..|+..+.+...-++.|
T Consensus 99 ~v~alT~~~~~~~~~t~~~L 118 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLREL 118 (252)
T ss_pred cEEEEcCCChhhHHHHHHHH
Confidence 99999999988887766543
No 204
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=85.60 E-value=0.47 Score=31.24 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.3
Q ss_pred EEEeCCCeeeeeec
Q 040601 10 LVLDLDHTLLHAVD 23 (97)
Q Consensus 10 LVLDLDeTLvhs~~ 23 (97)
+++|+||||+.+..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 78999999999863
No 205
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=85.55 E-value=0.48 Score=32.35 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=14.8
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
....+++|+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 456789999999999754
No 206
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=85.31 E-value=0.38 Score=33.41 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=10.8
Q ss_pred EEEeCCCeeeee
Q 040601 10 LVLDLDHTLLHA 21 (97)
Q Consensus 10 LVLDLDeTLvhs 21 (97)
.++|||+|||..
T Consensus 4 a~FDlD~TLi~~ 15 (203)
T TIGR02137 4 ACLDLEGVLVPE 15 (203)
T ss_pred EEEeCCcccHHH
Confidence 799999999965
No 207
>PLN02940 riboflavin kinase
Probab=85.11 E-value=0.49 Score=35.98 Aligned_cols=16 Identities=50% Similarity=0.677 Sum_probs=13.5
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
-..+++|+||||+.+.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 3568999999999985
No 208
>PLN02382 probable sucrose-phosphatase
Probab=84.84 E-value=0.56 Score=36.11 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=15.7
Q ss_pred cCCCCceEEEeCCCeeeee
Q 040601 3 YRQKKLHLVLDLDHTLLHA 21 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs 21 (97)
-...++.|+.||||||+.+
T Consensus 5 ~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cCCCCEEEEEcCCCcCcCC
Confidence 3556888999999999965
No 209
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=84.80 E-value=1.5 Score=31.82 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=28.7
Q ss_pred EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHh
Q 040601 56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
-+.+|.|..+|++.|. ..--+.||+||.-.-.+.+++.
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q 126 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQ 126 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHH
Confidence 5889999999999996 5679999999999988888764
No 210
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=84.53 E-value=1.3 Score=31.03 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=28.7
Q ss_pred EEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcce--EEEEeCCchHHHH
Q 040601 11 VLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYE--IYLCTTGIRSYAV 88 (97)
Q Consensus 11 VLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~e--i~i~T~~~~~YA~ 88 (97)
.||.||||.--...|. -...-|++.+.|++|++... ++|-|.-...-.+
T Consensus 1 ~lDyDGTL~p~~~~p~-----------------------------~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~ 51 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPD-----------------------------AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLE 51 (235)
T ss_dssp EEE-TTTSS---S-GG-----------------------------G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHH
T ss_pred CcccCCccCCCCCCcc-----------------------------ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhH
Confidence 4899999986654331 12366889999999987666 7777776666544
Q ss_pred H
Q 040601 89 M 89 (97)
Q Consensus 89 ~ 89 (97)
.
T Consensus 52 ~ 52 (235)
T PF02358_consen 52 R 52 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 211
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=83.79 E-value=0.58 Score=31.75 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=12.3
Q ss_pred eEEEeCCCeeeeee
Q 040601 9 HLVLDLDHTLLHAV 22 (97)
Q Consensus 9 ~LVLDLDeTLvhs~ 22 (97)
.+|+||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 58999999999874
No 212
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=83.59 E-value=2 Score=33.40 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG 82 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~ 82 (97)
+.+.+.+-+|+|+|||.+....-.+.. ... |-..-|.+-.=|+++ .+.|-++|||+.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~---------------------~~d-w~~l~~~vp~Klktl~~~g~~l~iftnq 129 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKVFPKG---------------------SMD-WRILFPEVPSKLKTLYQDGIKLFIFTNQ 129 (422)
T ss_pred CCCcceEEEecCCceeecCCcceeecc---------------------Ccc-ceeeccccchhhhhhccCCeEEEEEecc
Confidence 456677899999999998653211100 001 222334444445666 477888888876
Q ss_pred c
Q 040601 83 I 83 (97)
Q Consensus 83 ~ 83 (97)
.
T Consensus 130 ~ 130 (422)
T KOG2134|consen 130 N 130 (422)
T ss_pred c
Confidence 5
No 213
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=82.97 E-value=2.1 Score=30.70 Aligned_cols=38 Identities=5% Similarity=0.238 Sum_probs=34.3
Q ss_pred EEEecchHHHHHHHHh---hcceEEEEeCCchHHHHHHHHh
Q 040601 56 LVKLRPYIRKFLKEAS---KMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls---~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
-+.+.||..+|++.++ ..++++|-+.|..-|.+.+++.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~ 109 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEH 109 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHh
Confidence 5678999999999994 4899999999999999999875
No 214
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=82.63 E-value=1.3 Score=37.25 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCCCceEEEeCCCeeeeee
Q 040601 4 RQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~ 22 (97)
+.++..++||+||||+...
T Consensus 593 ~~~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 593 RTTTRAILLDYDGTLMPQA 611 (854)
T ss_pred hhcCeEEEEecCCcccCCc
Confidence 4567889999999999543
No 215
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=82.20 E-value=0.72 Score=32.14 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=14.8
Q ss_pred CCceEEEeCCCeeeeeec
Q 040601 6 KKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~~ 23 (97)
-+...++|+||||++...
T Consensus 4 ~~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDM 21 (210)
T ss_pred cCcEEEEcCCCCCccCcc
Confidence 356789999999999854
No 216
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=82.20 E-value=1.3 Score=30.99 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=13.3
Q ss_pred ceEEEeCCCeeeeee
Q 040601 8 LHLVLDLDHTLLHAV 22 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~ 22 (97)
..+++||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 579999999999984
No 217
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=82.18 E-value=3.8 Score=35.02 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=44.1
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh--cceEEEEeC
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK--MYEIYLCTT 81 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~--~~ei~i~T~ 81 (97)
+.++..|+||.||||+--...|..... . ....-+..-|++.+.|+.|++ .-.|+|-|-
T Consensus 588 ~a~~RLlfLDyDGTLap~~~~P~~~~~-------------~-------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSG 647 (934)
T PLN03064 588 QSNNRLLILGFNATLTEPVDTPGRRGD-------------Q-------IKEMELRLHPELKEPLRALCSDPKTTIVVLSG 647 (934)
T ss_pred hccceEEEEecCceeccCCCCcccccc-------------c-------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 456788999999999976544320000 0 001123355778888888864 467888887
Q ss_pred CchHHHHHHHHh
Q 040601 82 GIRSYAVMMAKL 93 (97)
Q Consensus 82 ~~~~YA~~v~~~ 93 (97)
-..+-.+..+..
T Consensus 648 R~~~~Le~~fg~ 659 (934)
T PLN03064 648 SDRSVLDENFGE 659 (934)
T ss_pred CCHHHHHHHhCC
Confidence 777766665543
No 218
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=81.28 E-value=3.7 Score=29.30 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=35.7
Q ss_pred EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..+-||++|+...| .++..+++-+-|-+..|.+|.+.|+
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lg 126 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLG 126 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhC
Confidence 34679999999999 6889999999999999999999987
No 219
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=79.46 E-value=3.7 Score=32.20 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=31.5
Q ss_pred eEEEEEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601 53 ELFLVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 53 ~~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L 94 (97)
..-||.+-|.+..+|+++.+ .=.+.+-|||.-.|++.+++.+
T Consensus 178 p~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 220 (448)
T PF05761_consen 178 PEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL 220 (448)
T ss_dssp CCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH
T ss_pred HHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc
Confidence 34477889999999999964 4479999999999999999764
No 220
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=77.86 E-value=4.3 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.738 Sum_probs=24.4
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCCc
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTGI 83 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~~ 83 (97)
....||+.+-+++|-+.|+++|-|++.
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaam 93 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAM 93 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEecc
Confidence 457799999999999999999999994
No 221
>PRK10671 copA copper exporting ATPase; Provisional
Probab=76.77 E-value=4.6 Score=33.73 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=34.4
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.++.+ ...+.+++.|...+..|+.+++.+.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lg 688 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAG 688 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 6799999999999 5679999999999999999998764
No 222
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=75.63 E-value=1.4 Score=29.92 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=19.7
Q ss_pred EEecchHHHHHHHHhhc-ceEEEEeCCchH
Q 040601 57 VKLRPYIRKFLKEASKM-YEIYLCTTGIRS 85 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~-~ei~i~T~~~~~ 85 (97)
...-||+.|.|++|.+. +++++-|+....
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 55779999999999765 577777766554
No 223
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.80 E-value=1.9 Score=37.08 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.7
Q ss_pred ceEEEeCCCeeeeeec
Q 040601 8 LHLVLDLDHTLLHAVD 23 (97)
Q Consensus 8 ~~LVLDLDeTLvhs~~ 23 (97)
..+++|+||||+++..
T Consensus 76 kaVIFDlDGTLiDS~~ 91 (1057)
T PLN02919 76 SAVLFDMDGVLCNSEE 91 (1057)
T ss_pred CEEEECCCCCeEeChH
Confidence 4689999999999954
No 224
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=72.82 E-value=1.4 Score=32.26 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=10.4
Q ss_pred ceEEEeCCCeee
Q 040601 8 LHLVLDLDHTLL 19 (97)
Q Consensus 8 ~~LVLDLDeTLv 19 (97)
...|.|||||||
T Consensus 3 ~VfvWDlDETlI 14 (274)
T TIGR01658 3 NVYVWDMDETLI 14 (274)
T ss_pred eeEEEeccchHH
Confidence 357999999998
No 225
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=71.67 E-value=7.6 Score=32.15 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=37.0
Q ss_pred EEEEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 54 LFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 54 ~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+.-..||++.+.++++. ..+++++.|...+..|+.+++.++
T Consensus 564 ~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lg 606 (741)
T PRK11033 564 ALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELG 606 (741)
T ss_pred EEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 334589999999999994 679999999999999999998875
No 226
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=71.04 E-value=8.5 Score=30.07 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceee-ecceEEEEEecch-------HHHHHHHH
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFK-MAGELFLVKLRPY-------IRKFLKEA 70 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~RP~-------~~~FL~~l 70 (97)
+.+..+|||+|.|..-....++....+ .|.. .....-...|. ..+..+...+||| ..+||+.+
T Consensus 137 ~~~~~i~LDiD~T~~~~~G~Qe~~~~n-~y~g--~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~ 207 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHGEQEGAVFN-TYYG--EDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRV 207 (448)
T ss_pred cccceEEEecccccccchhhccccccc-ccCC--CcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHH
Confidence 456889999999985433222111110 0100 00110011121 1356677899998 66777776
No 227
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=67.26 E-value=9.5 Score=23.43 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=14.7
Q ss_pred chHHHHHHHHhhcceEEEEeCCchHHHHHHH
Q 040601 61 PYIRKFLKEASKMYEIYLCTTGIRSYAVMMA 91 (97)
Q Consensus 61 P~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~ 91 (97)
-.+++.++.+.+-.++++||.+. +|.+.+.
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~ 37 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELL 37 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHH
Confidence 34445555555555555555543 4444433
No 228
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=64.70 E-value=3.4 Score=32.76 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=21.8
Q ss_pred ecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHh
Q 040601 59 LRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
+||...+-+++ .. +.+|-|++.+.|++++++.
T Consensus 111 l~~~a~~~~~~--~g-~~vvVSASp~~~Vepfa~~ 142 (497)
T PLN02177 111 VHPETWRVFNS--FG-KRYIITASPRIMVEPFVKT 142 (497)
T ss_pred cCHHHHHHHHh--CC-CEEEEECCcHHHHHHHHHH
Confidence 44554443332 22 3599999999999999954
No 229
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.20 E-value=11 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=35.6
Q ss_pred EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
-.++-||+++-++.+.+...=+|-+.+-..|+..++.+|.
T Consensus 81 sa~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~ig 120 (315)
T COG4030 81 SAKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASMIG 120 (315)
T ss_pred hcccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHhcC
Confidence 4678899999999999888888888899999999998864
No 230
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=63.03 E-value=11 Score=26.82 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=33.3
Q ss_pred EEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHh
Q 040601 54 LFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 54 ~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
.-....-||+.++++.| +..-.+.++|++.+..++..++.
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~ 128 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISR 128 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHH
Confidence 34667889999999999 57789999999988888776654
No 231
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=60.82 E-value=7.7 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.4
Q ss_pred CcCCCCceEEEeCCCeeeeeec
Q 040601 2 VYRQKKLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~~ 23 (97)
|-.+.+.++-+|+|.|++.|+.
T Consensus 58 LeG~~Pi~VsFDIDDTvLFsSp 79 (237)
T COG3700 58 LEGRPPIAVSFDIDDTVLFSSP 79 (237)
T ss_pred hcCCCCeeEeeccCCeeEeccc
Confidence 4456788999999999999974
No 232
>PHA03050 glutaredoxin; Provisional
Probab=60.05 E-value=17 Score=22.71 Aligned_cols=32 Identities=6% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 64 RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 64 ~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+|++++-+...|.|||.+.=.|...+.+.|+
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~ 34 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILN 34 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHH
Confidence 35556665555566666666666666555543
No 233
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=58.56 E-value=20 Score=29.70 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=34.6
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.++++ +...++++.|-..+.-|.++++.+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lG 484 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAG 484 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 7899999999999 4689999999999999999998764
No 234
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=56.78 E-value=7.7 Score=30.99 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=16.7
Q ss_pred eEEEEeCCchHHHHHHHHh
Q 040601 75 EIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 75 ei~i~T~~~~~YA~~v~~~ 93 (97)
+++|.|++.+.++++-++.
T Consensus 110 ~~vVVTAsPrvmVEpFake 128 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKE 128 (498)
T ss_pred eEEEEeCCHHHHHHHHHHH
Confidence 8999999999999987764
No 235
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=56.14 E-value=15 Score=22.13 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.3
Q ss_pred CCCCceEEEeCCCeee
Q 040601 4 RQKKLHLVLDLDHTLL 19 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLv 19 (97)
.....+|||+-|||.|
T Consensus 37 ~~~~~~l~L~eDGTeV 52 (77)
T cd06535 37 PCAGSRLCLYEDGTEV 52 (77)
T ss_pred CCCCcEEEEecCCcEe
Confidence 3446789999999999
No 236
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=54.71 E-value=7.6 Score=21.25 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHhhCC
Q 040601 81 TGIRSYAVMMAKLLDL 96 (97)
Q Consensus 81 ~~~~~YA~~v~~~LDP 96 (97)
..++.||-++++.+|-
T Consensus 21 g~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 21 GLSRKYAIPLLEYLDR 36 (50)
T ss_dssp TS-HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhc
Confidence 5689999999999883
No 237
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=54.29 E-value=19 Score=27.86 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=29.8
Q ss_pred ecchHHHHHHHHhh-cceEEE-EeCC----chHHHHHHHHh-hCC
Q 040601 59 LRPYIRKFLKEASK-MYEIYL-CTTG----IRSYAVMMAKL-LDL 96 (97)
Q Consensus 59 ~RP~~~~FL~~ls~-~~ei~i-~T~~----~~~YA~~v~~~-LDP 96 (97)
.+|++.+.|+.+.+ .+.+.| +|++ .++-++.+++. +||
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 68999999999965 667787 6996 45778888776 664
No 238
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=54.09 E-value=16 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.3
Q ss_pred ecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601 59 LRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
-+--+.-||+.|++.| ..++|.++++..|
T Consensus 36 nqktL~vFl~ALa~~Y--------Ge~~a~~~~~~~~ 64 (81)
T PF09119_consen 36 NQKTLQVFLEALAERY--------GEETANKVLDKMD 64 (81)
T ss_dssp -HHHHHHHHHHHHHTT--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------hHHHHHHHHHHhc
Confidence 3445788999999999 8899999988754
No 239
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=54.00 E-value=30 Score=22.83 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=28.1
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchH-HHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRS-YAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~-YA~~v~~~LD 95 (97)
..++.+.++++.+. ..+.+.|+|++..+ --+.+++.+|
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD 111 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLD 111 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCC
Confidence 47789999999995 56899999987652 2345666665
No 240
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=53.74 E-value=14 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.9
Q ss_pred CCCceEEEeCCCeeeee
Q 040601 5 QKKLHLVLDLDHTLLHA 21 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs 21 (97)
....+|||+-|||.|.+
T Consensus 38 ~~~~~lvL~eDGTeVdd 54 (78)
T cd01615 38 SAPVTLVLEEDGTEVDD 54 (78)
T ss_pred CCCeEEEEeCCCcEEcc
Confidence 56789999999999976
No 241
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=53.52 E-value=30 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 64 RKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 64 ~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.+|.+.+ ..+.++++||-..++.++.+.+..|
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~~~~~~l~~~vd 216 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDPELVPKLKGLVD 216 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhCC
Confidence 5788888 5689999999999999988776443
No 242
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=53.39 E-value=14 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=12.3
Q ss_pred CCceEEEeCCCeeeeee
Q 040601 6 KKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~ 22 (97)
+|+.|.+|+||||....
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 46679999999999763
No 243
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=53.15 E-value=26 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=34.3
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++| .....+++-|...+.-|..+++.+.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~G 566 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLG 566 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 6799999999999 5689999999999999999998763
No 244
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.84 E-value=15 Score=21.79 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=16.5
Q ss_pred EEEecch-HHHHHHHHhhcceEEE
Q 040601 56 LVKLRPY-IRKFLKEASKMYEIYL 78 (97)
Q Consensus 56 ~v~~RP~-~~~FL~~ls~~~ei~i 78 (97)
-+.-||| +++|++.+++...|.-
T Consensus 7 ~iPErpGal~~Fl~~l~p~~~ITe 30 (81)
T cd04907 7 EFPERPGALKKFLNELLPKWNITL 30 (81)
T ss_pred EcCCCCCHHHHHHHHhCCCCeEeE
Confidence 3456999 8999999985544443
No 245
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=52.49 E-value=15 Score=21.89 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.0
Q ss_pred CCCceEEEeCCCeeeeee
Q 040601 5 QKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~ 22 (97)
....+|||+=|||.|.+.
T Consensus 36 ~~~~~l~L~eDGT~VddE 53 (74)
T smart00266 36 DSPVTLVLEEDGTIVDDE 53 (74)
T ss_pred CCCcEEEEecCCcEEccH
Confidence 357899999999999763
No 246
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=51.86 E-value=9.8 Score=30.36 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.6
Q ss_pred CcCCCCceEEEeCCCeeeeee
Q 040601 2 VYRQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 2 ll~~~k~~LVLDLDeTLvhs~ 22 (97)
+.+..++.+|.|+|||+-.|-
T Consensus 370 vwr~n~kiVVsDiDGTITkSD 390 (580)
T COG5083 370 VWRNNKKIVVSDIDGTITKSD 390 (580)
T ss_pred EEeCCCcEEEEecCCcEEehh
Confidence 356778999999999998874
No 247
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=51.20 E-value=3.2 Score=28.29 Aligned_cols=18 Identities=44% Similarity=0.608 Sum_probs=15.7
Q ss_pred CcCCCCceEEEeC-CCeee
Q 040601 2 VYRQKKLHLVLDL-DHTLL 19 (97)
Q Consensus 2 ll~~~k~~LVLDL-DeTLv 19 (97)
||..+++.||.|| |+|+=
T Consensus 95 LLqRGRlPLv~dlsdeT~k 113 (167)
T PF05320_consen 95 LLQRGRLPLVSDLSDETLK 113 (167)
T ss_pred HHHccccccccccchHHHH
Confidence 6788999999999 88883
No 248
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=50.97 E-value=13 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.6
Q ss_pred CCCceEEEeCCCeeeee
Q 040601 5 QKKLHLVLDLDHTLLHA 21 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs 21 (97)
....+|||+-|||.|..
T Consensus 38 ~~~~~lvL~eDGT~Vdd 54 (78)
T PF02017_consen 38 EEPVRLVLEEDGTEVDD 54 (78)
T ss_dssp SSTCEEEETTTTCBESS
T ss_pred CcCcEEEEeCCCcEEcc
Confidence 46788999999999976
No 249
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=49.81 E-value=18 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.6
Q ss_pred CCCCceEEEeCCCeeeeee
Q 040601 4 RQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~ 22 (97)
.....+|||+=|||.|.+.
T Consensus 37 ~~~~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 37 TSGLVTLVLEEDGTVVDTE 55 (78)
T ss_pred CCCCcEEEEeCCCCEEccH
Confidence 3457899999999999773
No 250
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=48.23 E-value=81 Score=21.05 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=50.3
Q ss_pred CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC-
Q 040601 5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG- 82 (97)
Q Consensus 5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~- 82 (97)
+++-+.++|||-|+.-+-...++... + - + ....-+....-....|-++..|..|+ +..++++.+.+
T Consensus 3 ~~p~~~~fdldytiwP~~vdthl~~p---f-k---P-----~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ 70 (144)
T KOG4549|consen 3 EKPEAMQFDLDYTIWPRLVDTHLDYP---F-K---P-----FKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTM 70 (144)
T ss_pred CCCceeEEeccceeeeEEEEeccccc---c-c---c-----cccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCC
Confidence 36778999999999866544433221 0 0 0 00000112334567899999999996 56788877766
Q ss_pred chHHHHHHHHhh
Q 040601 83 IRSYAVMMAKLL 94 (97)
Q Consensus 83 ~~~YA~~v~~~L 94 (97)
.++||.+.++.+
T Consensus 71 ap~iA~q~L~~f 82 (144)
T KOG4549|consen 71 APQIASQGLETF 82 (144)
T ss_pred CHHHHHHHHHHh
Confidence 478999988865
No 251
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=47.86 E-value=18 Score=24.14 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=34.9
Q ss_pred EEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHH
Q 040601 11 VLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY 86 (97)
Q Consensus 11 VLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~Y 86 (97)
+|||||.+++.......+.. ..+...-+...+... -.-..|- -++.++++..|.-.+|+-...--
T Consensus 47 ildL~G~~l~l~S~R~~~~~---evi~~I~~~G~PviV-------AtDV~p~-P~~V~Kia~~f~A~ly~P~~dls 111 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRS---EVIEWISEYGKPVIV-------ATDVSPP-PETVKKIARSFNAVLYTPERDLS 111 (138)
T ss_pred EEecCCcEEEEEeecCCCHH---HHHHHHHHcCCEEEE-------EecCCCC-cHHHHHHHHHhCCcccCCCCcCC
Confidence 69999999999876655443 122111011111111 1112222 35677777778888887765433
No 252
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=46.74 E-value=17 Score=28.84 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEecch-HHHHHHHHhhcceEEEEe
Q 040601 54 LFLVKLRPY-IRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 54 ~~~v~~RP~-~~~FL~~ls~~~ei~i~T 80 (97)
.+-..-||| +++||..|+...+|..|-
T Consensus 423 ~~~fperpgaL~~Fl~~l~~~~~It~f~ 450 (499)
T TIGR01124 423 SFEFPERPGALLRFLNTLQGYWNISLFH 450 (499)
T ss_pred EEeCCCCccHHHHHHHhcCCCCceeeEE
Confidence 345667999 999999999888777663
No 253
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=46.12 E-value=41 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=34.2
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++|. ...++++.|-..+.-|.+|++.+.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elG 483 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAG 483 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 56999999999995 579999999999999999998764
No 254
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=44.82 E-value=21 Score=21.56 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.6
Q ss_pred CCceEEEeCCCeeeeee
Q 040601 6 KKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~ 22 (97)
...+|||+=|||.|.+.
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 46899999999999763
No 255
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=44.40 E-value=54 Score=20.85 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=26.2
Q ss_pred EEEecchHHHHHHHH---hhcceEEEEeCCchHHHHHHHH
Q 040601 56 LVKLRPYIRKFLKEA---SKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 56 ~v~~RP~~~~FL~~l---s~~~ei~i~T~~~~~YA~~v~~ 92 (97)
...-||.+.+.++.. ...-.+.|++.|++.-.+.+-+
T Consensus 114 ~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~ 153 (156)
T PF08030_consen 114 VHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRN 153 (156)
T ss_dssp EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHH
Confidence 445699999999999 3556799999999999888765
No 256
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=44.01 E-value=1.1e+02 Score=23.60 Aligned_cols=75 Identities=9% Similarity=0.209 Sum_probs=40.4
Q ss_pred cCCCCceEEEeCCCeeeeeeccCccchh-hHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcc--eEEEE
Q 040601 3 YRQKKLHLVLDLDHTLLHAVDIDILASK-DREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMY--EIYLC 79 (97)
Q Consensus 3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~--ei~i~ 79 (97)
++.-...||=|+|.|.+|+--... +.. .+..+.. ..--+.=||+..|.+.+.+.- .++--
T Consensus 157 ~~~a~igiISDiDDTV~~T~V~~~-~r~~~~s~~l~----------------~~tr~~ipGV~~~yr~l~~~~~apvfYv 219 (373)
T COG4850 157 LNRAGIGIISDIDDTVKVTGVTEG-PRKAGRSLLLH----------------ALTRQVIPGVSAWYRALTNLGDAPVFYV 219 (373)
T ss_pred ecccceeeeeccccceEecccccc-hHHHHHHhhhc----------------ccccCCCCCHHHHHHHHHhcCCCCeEEe
Confidence 455677899999999999964321 111 0111111 011224488888888885544 34444
Q ss_pred eCCchHHHHHHHHhh
Q 040601 80 TTGIRSYAVMMAKLL 94 (97)
Q Consensus 80 T~~~~~YA~~v~~~L 94 (97)
++|.-..-...-+.|
T Consensus 220 SnSPw~~f~~L~efi 234 (373)
T COG4850 220 SNSPWQLFPTLQEFI 234 (373)
T ss_pred cCChhHhHHHHHHHH
Confidence 454444444444443
No 257
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=43.74 E-value=25 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.2
Q ss_pred ceEEEEeCCchHHHHHHHHhhC
Q 040601 74 YEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 74 ~ei~i~T~~~~~YA~~v~~~LD 95 (97)
.++.+|..+...|.+.|.+.||
T Consensus 4 a~~SLYPmg~~dy~~~I~~~i~ 25 (81)
T PF07615_consen 4 AQFSLYPMGTDDYMDVILGAID 25 (81)
T ss_dssp EEEEEEETTSTTHHHHHHHHHH
T ss_pred EEEEecccCCccHHHHHHHHHH
Confidence 4788999999999999998875
No 258
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=43.65 E-value=30 Score=23.77 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.3
Q ss_pred cceEEEEeCCchHHHHHHHHhh
Q 040601 73 MYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 73 ~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+|+++||+-+..-|+.++++.|
T Consensus 108 ~yDlviflG~~~yy~sq~Ls~l 129 (170)
T COG1880 108 NYDLVIFLGSIYYYLSQVLSGL 129 (170)
T ss_pred CcceEEEEeccHHHHHHHHHHh
Confidence 6899999999999999999865
No 259
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=43.56 E-value=9.8 Score=29.76 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.2
Q ss_pred ceEEEeCCCeeeee
Q 040601 8 LHLVLDLDHTLLHA 21 (97)
Q Consensus 8 ~~LVLDLDeTLvhs 21 (97)
.+.|.|||||+|-.
T Consensus 198 RVFiWDlDEtiIif 211 (468)
T KOG3107|consen 198 RVFIWDLDETIIIF 211 (468)
T ss_pred eEEEeeccchHHHH
Confidence 46799999999843
No 260
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=42.96 E-value=45 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=13.8
Q ss_pred CCCCceEEEeCCCeeeeee
Q 040601 4 RQKKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~ 22 (97)
+..+..+.+|.|+||--+.
T Consensus 8 r~~~~l~lfdvdgtLt~~r 26 (252)
T KOG3189|consen 8 RDEETLCLFDVDGTLTPPR 26 (252)
T ss_pred cCCceEEEEecCCcccccc
Confidence 3445667789999997664
No 261
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=42.65 E-value=12 Score=29.21 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=24.5
Q ss_pred EecchHHHHHHHHhhcceEEEEeCCchHHHHHH
Q 040601 58 KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMM 90 (97)
Q Consensus 58 ~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v 90 (97)
.+|-.+++|=++-.-.--|++|||.+..|++-+
T Consensus 208 ~Ir~Dir~Fke~~~ldkViVLWTANTERy~~V~ 240 (512)
T KOG0693|consen 208 QIRKDIREFKEENKLDKVIVLWTANTERYSNVI 240 (512)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCcceeeccc
Confidence 456667777766655566999999999997643
No 262
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=41.90 E-value=50 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=34.6
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++|. ...++++-|--.+.-|.+|++.+.
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elG 479 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAG 479 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 78999999999995 588999999999999999998764
No 263
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=41.40 E-value=25 Score=21.34 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.5
Q ss_pred CCceEEEeCCCeeeeee
Q 040601 6 KKLHLVLDLDHTLLHAV 22 (97)
Q Consensus 6 ~k~~LVLDLDeTLvhs~ 22 (97)
...+|||+=|||.|.+.
T Consensus 38 ~~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 38 GVLTLVLEEDGTAVDSE 54 (81)
T ss_pred CceEEEEecCCCEEccH
Confidence 45899999999999773
No 264
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.31 E-value=45 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=31.5
Q ss_pred EEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHH
Q 040601 54 LFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMA 91 (97)
Q Consensus 54 ~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~ 91 (97)
..-+.+|-|..+|.+.| .....+.|||||.-.-.+.++
T Consensus 134 ~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~ 172 (298)
T KOG3128|consen 134 ESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVT 172 (298)
T ss_pred HhhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHH
Confidence 44678999999999999 467889999999877666655
No 265
>PHA01818 hypothetical protein
Probab=41.30 E-value=38 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHH----hhcceEEEEeCCchHHHHHHHHhhCC
Q 040601 66 FLKEA----SKMYEIYLCTTGIRSYAVMMAKLLDL 96 (97)
Q Consensus 66 FL~~l----s~~~ei~i~T~~~~~YA~~v~~~LDP 96 (97)
.|..+ +.-|.+.|||+..+.+-.+|+++||.
T Consensus 236 lls~~~~~~~~sf~llvyt~~~ktf~~~i~~~~~~ 270 (458)
T PHA01818 236 LLSSIRDDGSASFPLLVYTSDSKTFQQAIIDHIDR 270 (458)
T ss_pred HHhhcccCCCCceeEEEEecCCchHHHHHHHHHhc
Confidence 35555 55799999999999999999999874
No 266
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=41.21 E-value=50 Score=28.15 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=34.1
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.++.+ .....+++.|......|..+++.+.
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~g 575 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIG 575 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcC
Confidence 5799999999999 5789999999999999999998763
No 267
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=40.86 E-value=13 Score=26.21 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=12.2
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
.++++.+||+|+|--
T Consensus 25 a~~g~rVLliD~D~q 39 (268)
T TIGR01281 25 AKLGKRVLQIGCDPK 39 (268)
T ss_pred HhCCCeEEEEecCcc
Confidence 456888999999964
No 268
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=40.86 E-value=60 Score=24.03 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=27.2
Q ss_pred ecchHHHHHHHHhh-cceEEEEeCCc---hHHHHHHHH
Q 040601 59 LRPYIRKFLKEASK-MYEIYLCTTGI---RSYAVMMAK 92 (97)
Q Consensus 59 ~RP~~~~FL~~ls~-~~ei~i~T~~~---~~YA~~v~~ 92 (97)
+||.+.++++.+.+ .+.+.|.|||. .+.++.+.+
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~ 103 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALAD 103 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHh
Confidence 58999999999954 67789999996 567777654
No 269
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=39.63 E-value=55 Score=27.27 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=34.4
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++|. ...++++-|-..+.-|..|++.+.
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lG 480 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLG 480 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 68999999999994 679999999999999999998763
No 270
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=39.62 E-value=23 Score=21.35 Aligned_cols=16 Identities=38% Similarity=0.235 Sum_probs=13.9
Q ss_pred CceEEEeCCCeeeeee
Q 040601 7 KLHLVLDLDHTLLHAV 22 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~ 22 (97)
..+|||+=|||.|.+.
T Consensus 39 ~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 39 ISSLVLDEDGTGVDTE 54 (79)
T ss_pred ccEEEEecCCcEEccH
Confidence 5889999999999763
No 271
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=38.25 E-value=38 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=17.5
Q ss_pred EecchHHHHHHHHhhc-ceEEEEeC
Q 040601 58 KLRPYIRKFLKEASKM-YEIYLCTT 81 (97)
Q Consensus 58 ~~RP~~~~FL~~ls~~-~ei~i~T~ 81 (97)
.-||++.++|+.+.+. ++++|.+.
T Consensus 46 ~~Rp~l~~ll~~i~~g~~d~lvV~~ 70 (134)
T cd03769 46 EKRKGLLKLLEDVLAGKVERVVITY 70 (134)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 3799999999999654 55555443
No 272
>PRK09224 threonine dehydratase; Reviewed
Probab=37.98 E-value=31 Score=27.33 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred EEEEEecch-HHHHHHHHhhcceEEEE--eCCchHH
Q 040601 54 LFLVKLRPY-IRKFLKEASKMYEIYLC--TTGIRSY 86 (97)
Q Consensus 54 ~~~v~~RP~-~~~FL~~ls~~~ei~i~--T~~~~~Y 86 (97)
.+-+.-||| +++||+.+++..+|..| ++..+++
T Consensus 427 ~~~fPerpGal~~Fl~~l~~~~~It~f~Yr~~~~~~ 462 (504)
T PRK09224 427 RFEFPERPGALLKFLSTLGTHWNISLFHYRNHGADY 462 (504)
T ss_pred EEeCCCCCCHHHHHHHhcCCCCeeEEEEEccCCccc
Confidence 345667999 99999999887766554 4444433
No 273
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=37.86 E-value=71 Score=22.27 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=26.7
Q ss_pred ecch-HHHHHHHHh-hcceEEEEeCCch----HHHHHHHHhhC
Q 040601 59 LRPY-IRKFLKEAS-KMYEIYLCTTGIR----SYAVMMAKLLD 95 (97)
Q Consensus 59 ~RP~-~~~FL~~ls-~~~ei~i~T~~~~----~YA~~v~~~LD 95 (97)
++|. +.++++.+. ..+.+.+-|+|.. +.++.+++.+|
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d 125 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTD 125 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCC
Confidence 4666 578999994 5788999999973 56666655554
No 274
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=36.54 E-value=21 Score=28.80 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.1
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
.-++|.|+||||+.|..
T Consensus 50 ~~t~v~d~~g~Ll~s~s 66 (525)
T PLN02588 50 NHTLIFNVEGALLKSNS 66 (525)
T ss_pred cceEEEecccceeccCC
Confidence 45799999999998754
No 275
>PRK10824 glutaredoxin-4; Provisional
Probab=36.09 E-value=68 Score=20.43 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=8.7
Q ss_pred HHHHHHhhcceEEEEeCC
Q 040601 65 KFLKEASKMYEIYLCTTG 82 (97)
Q Consensus 65 ~FL~~ls~~~ei~i~T~~ 82 (97)
++++.+-+...|+||+.|
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg 23 (115)
T PRK10824 6 EKIQRQIAENPILLYMKG 23 (115)
T ss_pred HHHHHHHhcCCEEEEECC
Confidence 444444444455555544
No 276
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=35.78 E-value=79 Score=21.19 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=26.5
Q ss_pred EEecchHHHHHHHHhhcceEEEEeCC----chHHHHHHHHh
Q 040601 57 VKLRPYIRKFLKEASKMYEIYLCTTG----IRSYAVMMAKL 93 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~~~ei~i~T~~----~~~YA~~v~~~ 93 (97)
-..=+.+.+||+++... .|++|... ..+|+..+++.
T Consensus 52 G~~d~~~~~fl~~l~~K-kV~lF~T~G~~~~s~~~~~~~~~ 91 (160)
T PF12641_consen 52 GTPDKDMKEFLKKLKGK-KVALFGTAGAGPDSEYAKKILKN 91 (160)
T ss_pred CCCCHHHHHHHHHccCC-eEEEEEecCCCCchHHHHHHHHH
Confidence 35667899999999643 57777653 67898888754
No 277
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=35.35 E-value=47 Score=20.99 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.3
Q ss_pred ecchHHHHHHHHhh-cceEEEEeCCc
Q 040601 59 LRPYIRKFLKEASK-MYEIYLCTTGI 83 (97)
Q Consensus 59 ~RP~~~~FL~~ls~-~~ei~i~T~~~ 83 (97)
-||++.++|+.+.+ .+.++|.+.-.
T Consensus 50 ~Rp~l~~ll~~~~~g~~~~ivv~~~~ 75 (148)
T smart00857 50 DRPGLQRLLADLRAGDIDVLVVYKLD 75 (148)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEeccc
Confidence 59999999999964 35566655544
No 278
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=34.97 E-value=77 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.6
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCc---hHHHHHHHH
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGI---RSYAVMMAK 92 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~---~~YA~~v~~ 92 (97)
+||.+.++++.+. ..+.+.|.|||. .+.++.+.+
T Consensus 75 l~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~ 112 (378)
T PRK05301 75 LRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKD 112 (378)
T ss_pred CchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHH
Confidence 4899999999995 477889999996 466666554
No 279
>PF00239 Resolvase: Resolvase, N terminal domain; InterPro: IPR006119 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA, and a C-terminal helix-turn-helix DNA-binding domain IPR006120 from INTERPRO. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 3PLO_X 3BVP_B 2RSL_C 1ZR2_A 2GM4_B 2GM5_D 1ZR4_A 1GDT_B 1HX7_A 1GHT_A ....
Probab=34.93 E-value=47 Score=20.72 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=16.5
Q ss_pred ecchHHHHHHHHhhcceEEEEe
Q 040601 59 LRPYIRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~~ei~i~T 80 (97)
-||++.++|+.+.. .+++|..
T Consensus 46 ~R~~~~~ll~~~~~-~d~ivv~ 66 (141)
T PF00239_consen 46 ERPGFQELLEDIES-GDVIVVY 66 (141)
T ss_dssp TCHHHHHHHHHHHT-EEEEEES
T ss_pred cccceeeecccccc-cceEEEE
Confidence 39999999999987 5655544
No 280
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=34.66 E-value=75 Score=27.16 Aligned_cols=38 Identities=3% Similarity=-0.080 Sum_probs=34.6
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++|. ...++++-|--.+.-|.+|++.+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lG 588 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVG 588 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 68999999999994 679999999999999999998764
No 281
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=34.37 E-value=23 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhc---ceEEEEeCCchHHHHH
Q 040601 60 RPYIRKFLKEASKM---YEIYLCTTGIRSYAVM 89 (97)
Q Consensus 60 RP~~~~FL~~ls~~---~ei~i~T~~~~~YA~~ 89 (97)
+|.+.++++.+.+. ..+.|.|+|....-..
T Consensus 64 ~~~l~~~i~~~~~~~~~~~i~i~TNg~~~~~~~ 96 (119)
T PF13394_consen 64 PEDLIELIEYLKERGPEIKIRIETNGTLPTEEK 96 (119)
T ss_dssp HHHHHHHHCTSTT-----EEEEEE-STTHHHHH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCeeccccc
Confidence 46788888888655 6999999998875444
No 282
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=33.96 E-value=59 Score=24.25 Aligned_cols=26 Identities=31% Similarity=0.695 Sum_probs=22.3
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
++|++.++++.+. ..+.+.|-|||..
T Consensus 143 L~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 143 LYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred chhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 4799999999995 5788999999975
No 283
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.76 E-value=67 Score=23.49 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcceEEEEeCCchHHHH
Q 040601 63 IRKFLKEASKMYEIYLCTTGIRSYAV 88 (97)
Q Consensus 63 ~~~FL~~ls~~~ei~i~T~~~~~YA~ 88 (97)
+.|.+.+|.+.|.|+|-|.+.+.-|+
T Consensus 188 IEeLi~eLk~~yTIviVTHnmqQAaR 213 (253)
T COG1117 188 IEELITELKKKYTIVIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHhccEEEEEeCCHHHHHH
Confidence 78999999999999999999876554
No 284
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=33.15 E-value=84 Score=26.68 Aligned_cols=38 Identities=3% Similarity=-0.046 Sum_probs=34.5
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+-+++|. ...++++-|-..+.-|.+|++.+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lG 553 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVG 553 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 67999999999995 589999999999999999998764
No 285
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=32.85 E-value=80 Score=18.17 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=21.6
Q ss_pred ceEEEEEecch--HHHHHHHHhhcc-----eEEEEeCC
Q 040601 52 GELFLVKLRPY--IRKFLKEASKMY-----EIYLCTTG 82 (97)
Q Consensus 52 ~~~~~v~~RP~--~~~FL~~ls~~~-----ei~i~T~~ 82 (97)
++...|..||| ++++|..+-+.. .+.||..+
T Consensus 10 ~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 10 GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 46678999999 899999995433 45666544
No 286
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.21 E-value=22 Score=25.17 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=11.5
Q ss_pred cCCCCceEEEeCCC
Q 040601 3 YRQKKLHLVLDLDH 16 (97)
Q Consensus 3 l~~~k~~LVLDLDe 16 (97)
-++++.+||+|+|-
T Consensus 27 a~~G~kVLliD~Dp 40 (270)
T PRK13185 27 AKLGKKVLQIGCDP 40 (270)
T ss_pred HHCCCeEEEEeccC
Confidence 35688999999994
No 287
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=31.96 E-value=89 Score=26.19 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=34.9
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||...+.++.| ....++++-|--.+.-|++|.+.|.
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lG 575 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELG 575 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 6899999999999 5789999999999999999998764
No 288
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=31.86 E-value=8.1 Score=25.68 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.7
Q ss_pred EEEEecchHHHHHHHHhhcc
Q 040601 55 FLVKLRPYIRKFLKEASKMY 74 (97)
Q Consensus 55 ~~v~~RP~~~~FL~~ls~~~ 74 (97)
.|.+.||++.+|++.|++.-
T Consensus 32 aY~Rvk~~L~~F~~~L~D~~ 51 (143)
T PF08559_consen 32 AYNRVKPHLLEFLKALSDFG 51 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999997644
No 289
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=31.83 E-value=1.2e+02 Score=22.93 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.1
Q ss_pred EEEEecc-hHHHHHHHHhh------cceEEEEeCCchHHHHHHH
Q 040601 55 FLVKLRP-YIRKFLKEASK------MYEIYLCTTGIRSYAVMMA 91 (97)
Q Consensus 55 ~~v~~RP-~~~~FL~~ls~------~~ei~i~T~~~~~YA~~v~ 91 (97)
+.+..|| ++++-|+.+.+ .++|+|+-.|..+-+..++
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v 49 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVA 49 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHH
Confidence 4677899 69999999953 5889999888876544444
No 290
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.79 E-value=61 Score=20.06 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=18.7
Q ss_pred EEecchHHHHHHHHhh-cceEEEEeCC
Q 040601 57 VKLRPYIRKFLKEASK-MYEIYLCTTG 82 (97)
Q Consensus 57 v~~RP~~~~FL~~ls~-~~ei~i~T~~ 82 (97)
..-||++.++|+.+.+ .+.++|.+.-
T Consensus 48 ~~~R~~~~~ll~~~~~~~~d~ivv~~~ 74 (137)
T cd00338 48 LVDRPGLQRLLADVKAGKIDVVLVEKL 74 (137)
T ss_pred ccCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 4579999999999963 5555555443
No 291
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=31.77 E-value=23 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=11.0
Q ss_pred cCCCCceEEEeCC
Q 040601 3 YRQKKLHLVLDLD 15 (97)
Q Consensus 3 l~~~k~~LVLDLD 15 (97)
-+.+|.+||+|+|
T Consensus 25 a~~G~rvLliD~D 37 (212)
T cd02117 25 AEMGKKVLQVGCD 37 (212)
T ss_pred HHCCCcEEEEeCC
Confidence 3567899999999
No 292
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=31.75 E-value=1e+02 Score=23.11 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.1
Q ss_pred ecchHHHHHHHHhh-c-ceEEEEeCCchHHHHHHHHhh
Q 040601 59 LRPYIRKFLKEASK-M-YEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 59 ~RP~~~~FL~~ls~-~-~ei~i~T~~~~~YA~~v~~~L 94 (97)
+.|++.++++.+.+ . +..+|-|||+. ..|++.|
T Consensus 93 Ly~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L 127 (296)
T COG0731 93 LYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL 127 (296)
T ss_pred cccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh
Confidence 67999999999953 4 58999999999 5555555
No 293
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=31.33 E-value=95 Score=26.58 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=34.3
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.+++|. ...++++-|--.+.-|.+|++.+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lG 588 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVG 588 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 57999999999994 689999999999999999998764
No 294
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=30.29 E-value=1.3e+02 Score=19.97 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=23.6
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCch-HHHHHHH
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGIR-SYAVMMA 91 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~-~YA~~v~ 91 (97)
++|.+.++++.+. ..+.+.|-|+|.. +.++.++
T Consensus 75 l~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~ 109 (191)
T TIGR02495 75 LQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELL 109 (191)
T ss_pred CcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHH
Confidence 4777889999984 5678999999963 3344443
No 295
>PHA02122 hypothetical protein
Probab=30.26 E-value=34 Score=19.43 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=10.9
Q ss_pred EeCCCeeeeeecc
Q 040601 12 LDLDHTLLHAVDI 24 (97)
Q Consensus 12 LDLDeTLvhs~~~ 24 (97)
=|+|+.+|||..+
T Consensus 27 ~~~~~iiihs~~~ 39 (65)
T PHA02122 27 DGCENIIIHSFKD 39 (65)
T ss_pred CCCCcEEEEeecc
Confidence 3899999999764
No 296
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.23 E-value=93 Score=25.60 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred cchHHHHHHHHhhcc---eEEEEeCCchHHHHHHHHh
Q 040601 60 RPYIRKFLKEASKMY---EIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 60 RP~~~~FL~~ls~~~---ei~i~T~~~~~YA~~v~~~ 93 (97)
||-.++++++..... .+.||..|++.-++.+.+.
T Consensus 591 RPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~ 627 (646)
T KOG0039|consen 591 RPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKL 627 (646)
T ss_pred CCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHH
Confidence 999999999996433 3999999999999988765
No 297
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=29.85 E-value=35 Score=23.50 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=13.5
Q ss_pred CceEEEeCCCeeeeeec
Q 040601 7 KLHLVLDLDHTLLHAVD 23 (97)
Q Consensus 7 k~~LVLDLDeTLvhs~~ 23 (97)
=+.|++|.||||-....
T Consensus 8 IkLli~DVDGvLTDG~l 24 (170)
T COG1778 8 IKLLILDVDGVLTDGKL 24 (170)
T ss_pred ceEEEEeccceeecCeE
Confidence 35689999999987753
No 298
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=29.65 E-value=26 Score=24.86 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=11.3
Q ss_pred CcCCCCceEEEeCC
Q 040601 2 VYRQKKLHLVLDLD 15 (97)
Q Consensus 2 ll~~~k~~LVLDLD 15 (97)
|-++++.+|++|+|
T Consensus 24 La~~G~~VlliD~D 37 (275)
T TIGR01287 24 LAEMGKKVMIVGCD 37 (275)
T ss_pred HHHCCCeEEEEeCC
Confidence 34567889999999
No 299
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=29.40 E-value=80 Score=16.85 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=6.5
Q ss_pred hHHHHHHHHhhCCC
Q 040601 84 RSYAVMMAKLLDLK 97 (97)
Q Consensus 84 ~~YA~~v~~~LDP~ 97 (97)
-.-+..+++.+||+
T Consensus 29 ~~~l~~~I~~~Dp~ 42 (55)
T PF10035_consen 29 LPKLKKIIKEIDPK 42 (55)
T ss_dssp HHHHHHHHHCC-TT
T ss_pred HHHHHHHHHHhCCC
Confidence 33444555556654
No 300
>PRK10037 cell division protein; Provisional
Probab=28.71 E-value=28 Score=24.42 Aligned_cols=15 Identities=20% Similarity=-0.009 Sum_probs=12.1
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
-+++|.+|++|+|.-
T Consensus 27 a~~G~rVLlID~D~q 41 (250)
T PRK10037 27 QMLGENVLVIDACPD 41 (250)
T ss_pred HhcCCcEEEEeCChh
Confidence 356789999999964
No 301
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=28.53 E-value=61 Score=19.93 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.5
Q ss_pred EecchHHHHHHHHhhcceEEEEe
Q 040601 58 KLRPYIRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 58 ~~RP~~~~FL~~ls~~~ei~i~T 80 (97)
..||++.++|+.+.+.-.|+|+.
T Consensus 40 ~~R~~~~~ll~~~~~~d~lvv~~ 62 (126)
T cd03768 40 KERPELQKLLEDLREGDTLVVTK 62 (126)
T ss_pred cCCHHHHHHHHhCcCCCEEEEEE
Confidence 67999999999998554455554
No 302
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=27.69 E-value=29 Score=24.48 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=11.6
Q ss_pred cCCCCceEEEeCCC
Q 040601 3 YRQKKLHLVLDLDH 16 (97)
Q Consensus 3 l~~~k~~LVLDLDe 16 (97)
-++++.+|++|+|-
T Consensus 25 a~~G~rvlliD~Dp 38 (267)
T cd02032 25 AKRGKKVLQIGCDP 38 (267)
T ss_pred HHCCCcEEEEecCC
Confidence 35688999999995
No 303
>COG1961 PinR Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]
Probab=27.67 E-value=65 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=16.4
Q ss_pred cchHHHHHHHHhhc-ceEEEEe
Q 040601 60 RPYIRKFLKEASKM-YEIYLCT 80 (97)
Q Consensus 60 RP~~~~FL~~ls~~-~ei~i~T 80 (97)
||++.++|+.+.+. =.++|+-
T Consensus 50 Rp~l~~ll~~i~~g~d~lvV~~ 71 (222)
T COG1961 50 RPGLQRLLEDIEEGKDTLVVYK 71 (222)
T ss_pred CHHHHHHHHHHHcCCcEEEEEE
Confidence 99999999999876 4455543
No 304
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=27.26 E-value=64 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.6
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCchHH
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSY 86 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~Y 86 (97)
++|++.++++.+. ..+.+.|=|||+..-
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 4689999999994 689999999998644
No 305
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.09 E-value=1.4e+02 Score=20.88 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=27.6
Q ss_pred cchHHHHHHHH-hhcceEEEEeCC--chHHHHHHHHhhC
Q 040601 60 RPYIRKFLKEA-SKMYEIYLCTTG--IRSYAVMMAKLLD 95 (97)
Q Consensus 60 RP~~~~FL~~l-s~~~ei~i~T~~--~~~YA~~v~~~LD 95 (97)
.+++.++++.+ .....+.|=|+| ..+..+.++..+|
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D 91 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCD 91 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999 467889999999 4556667777666
No 306
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=26.87 E-value=1.2e+02 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=34.3
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+.++.|. ....+++-|--.+.-|..|++.+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~G 617 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCG 617 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 78999999999994 588999999999999999988763
No 307
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=26.58 E-value=30 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.177 Sum_probs=11.8
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
-+.++.+|++|+|-=
T Consensus 26 a~~G~rVLliD~Dpq 40 (279)
T PRK13230 26 AESGKKVLVVGCDPK 40 (279)
T ss_pred HhCCCEEEEEeeCCc
Confidence 456788999999963
No 308
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.97 E-value=1.3e+02 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=24.3
Q ss_pred ecchHHHHHHHHhhc---ceEEEEeCCc--hHHHHHHH
Q 040601 59 LRPYIRKFLKEASKM---YEIYLCTTGI--RSYAVMMA 91 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~---~ei~i~T~~~--~~YA~~v~ 91 (97)
+||.+.++++.+.+. .++.|.|+|. .+.++.+.
T Consensus 78 l~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~ 115 (331)
T PRK00164 78 LRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALK 115 (331)
T ss_pred CccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHH
Confidence 478999999999754 5899999995 34444443
No 309
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.46 E-value=88 Score=20.05 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=18.2
Q ss_pred EecchHHHHHHHHhh-cceEEEEeC
Q 040601 58 KLRPYIRKFLKEASK-MYEIYLCTT 81 (97)
Q Consensus 58 ~~RP~~~~FL~~ls~-~~ei~i~T~ 81 (97)
.-||++.++|+.+.+ .++++|.+.
T Consensus 52 ~~Rp~l~~ll~~~~~g~vd~vvv~~ 76 (140)
T cd03770 52 FDRPGFNRMIEDIEAGKIDIVIVKD 76 (140)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEec
Confidence 469999999999964 466666654
No 310
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=25.26 E-value=1.4e+02 Score=23.21 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=33.1
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
..||++.+.++.+. ....+++.|-..+.-|..+.+.+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l 384 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL 384 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 78999999999995 57889999999999999998765
No 311
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.15 E-value=57 Score=20.45 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.9
Q ss_pred chHHHHHHHHhhCCC
Q 040601 83 IRSYAVMMAKLLDLK 97 (97)
Q Consensus 83 ~~~YA~~v~~~LDP~ 97 (97)
...||+...+.|||+
T Consensus 42 Le~~addl~nsLdP~ 56 (97)
T PF05440_consen 42 LEKAADDLVNSLDPR 56 (97)
T ss_pred HHHHHHHHHhccCCC
Confidence 468999999999995
No 312
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=24.84 E-value=35 Score=24.24 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=11.8
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
-+.++.+|++|+|--
T Consensus 26 a~~G~rVLlID~Dpq 40 (274)
T PRK13235 26 AEMGKKVMVVGCDPK 40 (274)
T ss_pred HHCCCcEEEEecCCc
Confidence 356889999999854
No 313
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=24.64 E-value=60 Score=23.69 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=41.3
Q ss_pred CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh---------cc
Q 040601 4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK---------MY 74 (97)
Q Consensus 4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~---------~~ 74 (97)
.+++=..++|||.|++|=...- .+.... -..+|.-++|--+++..+-++..++ .+
T Consensus 77 G~R~Gi~IIdLdqT~~~Lr~A~--------~fVa~v--------A~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w 140 (251)
T KOG0832|consen 77 GKRLGIHIIDLDQTASYLRRAL--------NFVAHV--------AHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKW 140 (251)
T ss_pred ccccCcEEEecHHHHHHHHHHH--------HHHHHH--------HhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeee
Confidence 4556677999999999875321 111100 0112566788899999999988854 23
Q ss_pred eEEEEeCCch
Q 040601 75 EIYLCTTGIR 84 (97)
Q Consensus 75 ei~i~T~~~~ 84 (97)
...+||++..
T Consensus 141 ~~G~lTN~~~ 150 (251)
T KOG0832|consen 141 LGGLLTNARE 150 (251)
T ss_pred ccceeecchh
Confidence 4567777653
No 314
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.59 E-value=1.2e+02 Score=22.00 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.1
Q ss_pred eEEEEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHh
Q 040601 53 ELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 53 ~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~ 93 (97)
..+-+..|--+++|+.++.+-=.++||++-..+=++++++.
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 44556677788999999987777899999888888888875
No 315
>smart00455 RBD Raf-like Ras-binding domain.
Probab=24.52 E-value=96 Score=17.83 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=23.2
Q ss_pred ceEEEEEecch--HHHHHHHHhhc-----ceEEEEeCCc
Q 040601 52 GELFLVKLRPY--IRKFLKEASKM-----YEIYLCTTGI 83 (97)
Q Consensus 52 ~~~~~v~~RP~--~~~FL~~ls~~-----~ei~i~T~~~ 83 (97)
+...-|..||| +++.|+.+-+. .++.+|-.|.
T Consensus 9 ~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~ 47 (70)
T smart00455 9 NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGE 47 (70)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCC
Confidence 45668899999 89999998432 2577776653
No 316
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.46 E-value=37 Score=23.72 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=11.5
Q ss_pred cCCCCceEEEeCCC
Q 040601 3 YRQKKLHLVLDLDH 16 (97)
Q Consensus 3 l~~~k~~LVLDLDe 16 (97)
-+.++.+|++|+|.
T Consensus 26 a~~G~kVlliD~Dp 39 (270)
T cd02040 26 AEMGKKVMIVGCDP 39 (270)
T ss_pred HhCCCeEEEEEcCC
Confidence 35788999999994
No 317
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.26 E-value=73 Score=20.06 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=18.1
Q ss_pred ecchHHHHHHHHhhc--ceEEEEeC
Q 040601 59 LRPYIRKFLKEASKM--YEIYLCTT 81 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~--~ei~i~T~ 81 (97)
.=|+++++.+.+++. ++|+.+|.
T Consensus 83 ~CP~~~~~~~~I~~~~gi~VV~GTH 107 (107)
T PF08821_consen 83 PCPHIDEIKKIIEEKFGIEVVEGTH 107 (107)
T ss_pred CCCCHHHHHHHHHHHhCCCEeeecC
Confidence 448999999999655 48998884
No 318
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=24.20 E-value=1.1e+02 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=18.9
Q ss_pred HHHHhhcceEEEEeCCchHHHHHHHHhhCCC
Q 040601 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97 (97)
Q Consensus 67 L~~ls~~~ei~i~T~~~~~YA~~v~~~LDP~ 97 (97)
|.++++.|.+-+|.+.....|.+++....|+
T Consensus 78 l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p~ 108 (158)
T PF01976_consen 78 LKKLAEKYGYKVYIATGGTLARKIIKEYRPK 108 (158)
T ss_pred HHHHHHHcCCEEEEEcChHHHHHHHHHhCCC
Confidence 3344444445566666667788887776664
No 319
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=23.89 E-value=92 Score=17.17 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=17.0
Q ss_pred eEEEEeCCchHHHHHHHHhhC
Q 040601 75 EIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 75 ei~i~T~~~~~YA~~v~~~LD 95 (97)
.|.|||...=.|..++.+.|+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~ 22 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQ 22 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHH
Confidence 478899998888888877764
No 320
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=23.58 E-value=1.3e+02 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHH-hhcceEEEEeCCch--HHHHHHHHh
Q 040601 65 KFLKEA-SKMYEIYLCTTGIR--SYAVMMAKL 93 (97)
Q Consensus 65 ~FL~~l-s~~~ei~i~T~~~~--~YA~~v~~~ 93 (97)
++++.+ ..+..+++||-... ++++..++.
T Consensus 213 ~~v~~~~~~g~~v~~wtvn~~~~~~~~~l~~~ 244 (256)
T PF03009_consen 213 RLVQEAHKAGLKVYVWTVNDPDVEDMKRLLDL 244 (256)
T ss_dssp HHHHHHHHTT-EEEEBSB-SHSHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCCcHHHHHHHHHhC
Confidence 488888 57899999999999 888777653
No 321
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=23.55 E-value=1.4e+02 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=33.3
Q ss_pred EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601 58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
..||++.+-++++. ....+++.|--...-|.++++.+
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~ 605 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV 605 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 57999999999995 67999999999999999998765
No 322
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=23.13 E-value=1.8e+02 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred ecchHHHHHHHHhh--cc-eEEEEeCCc--hHHHHHHH
Q 040601 59 LRPYIRKFLKEASK--MY-EIYLCTTGI--RSYAVMMA 91 (97)
Q Consensus 59 ~RP~~~~FL~~ls~--~~-ei~i~T~~~--~~YA~~v~ 91 (97)
+||.+.++++.+++ .. ++.|-|||. .++++.+.
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~ 109 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLK 109 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHH
Confidence 58999999999965 46 789999986 44555544
No 323
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A.
Probab=23.12 E-value=1.2e+02 Score=17.48 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=20.9
Q ss_pred HHHHHHHH-hhcceEEEEeCCchHHHHHHH
Q 040601 63 IRKFLKEA-SKMYEIYLCTTGIRSYAVMMA 91 (97)
Q Consensus 63 ~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~ 91 (97)
++..-++| .+..+++-||...++|+...+
T Consensus 30 ik~i~~~L~gekIdvV~~s~d~~~fI~nal 59 (69)
T PF13184_consen 30 IKAISEELNGEKIDVVEYSDDPKEFIKNAL 59 (69)
T ss_dssp HHHHHHHTTT-EEEEEE--SSHHHHHHHHT
T ss_pred HHHHHHHhCCCeEEEEEcCCCHHHHHHHhC
Confidence 56777888 788999999999999886554
No 324
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=22.76 E-value=1.6e+02 Score=25.73 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=34.3
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD 95 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD 95 (97)
..||++.+-++.| +....+++-|-..+.-|..|++.+.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~G 684 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVG 684 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcC
Confidence 6899999999999 5789999999999999999987653
No 325
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=22.51 E-value=1.1e+02 Score=20.93 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=24.2
Q ss_pred hHHHHHHHHhh----------cceEEEEeCCchHHHHHHHHhh
Q 040601 62 YIRKFLKEASK----------MYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 62 ~~~~FL~~ls~----------~~ei~i~T~~~~~YA~~v~~~L 94 (97)
+..+.-..+.+ .|+++||.--..-||+.+++.|
T Consensus 83 ~~~~~~~~l~~p~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~L 125 (167)
T PF02552_consen 83 PKIEPENELNDPHWNGTDGHGNYDLVIFIGVHCYYANQVLSIL 125 (167)
T ss_dssp -HHHHHHHCCSTT--TTTSS---SEEEEES--HHHHHHHHHHH
T ss_pred ccccHHHhcCCCCCCccccCCcccEEEEecchHHHHHHHHHHH
Confidence 67777777765 8999999999999999999876
No 326
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=22.40 E-value=1.8e+02 Score=21.45 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=24.1
Q ss_pred ecchHHHHHHHHhhcc---eEEEEeCCch--HHHHHHH
Q 040601 59 LRPYIRKFLKEASKMY---EIYLCTTGIR--SYAVMMA 91 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~~---ei~i~T~~~~--~YA~~v~ 91 (97)
+||.+.++++.+.+.. ++.|-|||.. +.|+.+.
T Consensus 74 lr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~ 111 (329)
T PRK13361 74 VRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELA 111 (329)
T ss_pred ccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHH
Confidence 6899999999996542 6889999963 3444443
No 327
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.39 E-value=1.2e+02 Score=24.10 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601 62 YIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL 94 (97)
Q Consensus 62 ~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L 94 (97)
.+++.|+.+.+-.++.+|++...+|...+.+.|
T Consensus 356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l 388 (555)
T TIGR03143 356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFL 388 (555)
T ss_pred HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHH
Confidence 377788888888899999998776777766655
No 328
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=22.33 E-value=1.8e+02 Score=21.21 Aligned_cols=29 Identities=3% Similarity=-0.039 Sum_probs=23.2
Q ss_pred HHHHHHH-hhcceEEEEeCCchHHHHHHHH
Q 040601 64 RKFLKEA-SKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 64 ~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~ 92 (97)
.+|.+.+ ....++++||-..++-++..++
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~ 280 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERAFE 280 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHHHh
Confidence 4677777 4689999999999888887765
No 329
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.29 E-value=2e+02 Score=19.07 Aligned_cols=29 Identities=7% Similarity=-0.062 Sum_probs=22.5
Q ss_pred HHHHHHHh-hcceEEEEeCCc-hHHHHHHHH
Q 040601 64 RKFLKEAS-KMYEIYLCTTGI-RSYAVMMAK 92 (97)
Q Consensus 64 ~~FL~~ls-~~~ei~i~T~~~-~~YA~~v~~ 92 (97)
.++.+.+. ....+.+||-.. ++-++..++
T Consensus 139 ~~~v~~~~~~g~~v~~wtvn~~~~~~~~l~~ 169 (179)
T cd08555 139 TELIASANKLGLLSRIWTVNDNNEIINKFLN 169 (179)
T ss_pred HHHHHHHHHCCCEEEEEeeCChHHHHHHHHH
Confidence 56667773 578999999998 888777765
No 330
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=21.76 E-value=1.2e+02 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=32.2
Q ss_pred EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHH
Q 040601 58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~ 92 (97)
++||++.+.++.| .....+++-|-...+.|..|+.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~ 666 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGY 666 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHH
Confidence 7999999999999 4689999999999999999963
No 331
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=21.75 E-value=84 Score=17.91 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=8.2
Q ss_pred HHHHHHHHhhcceEE
Q 040601 63 IRKFLKEASKMYEIY 77 (97)
Q Consensus 63 ~~~FL~~ls~~~ei~ 77 (97)
++++|+...=-|+.+
T Consensus 24 ak~~L~~~gi~y~~i 38 (79)
T TIGR02190 24 AKATLKEKGYDFEEI 38 (79)
T ss_pred HHHHHHHcCCCcEEE
Confidence 566666665444443
No 332
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=21.74 E-value=2.1e+02 Score=18.45 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=21.9
Q ss_pred chHHHHHHHHhhcceEEEEeCCchHHH
Q 040601 61 PYIRKFLKEASKMYEIYLCTTGIRSYA 87 (97)
Q Consensus 61 P~~~~FL~~ls~~~ei~i~T~~~~~YA 87 (97)
.-+..||+.+.+ .-..|+-+|.+.|.
T Consensus 52 ~~~~~Fle~~~n-~~~gV~gSGn~n~g 77 (125)
T TIGR00333 52 KQTISFLNKKHN-LLRGVAASGNKVWG 77 (125)
T ss_pred HHHHHHHHhhhh-cEEEEEEcCCCchH
Confidence 558899998877 77889999999983
No 333
>PF13728 TraF: F plasmid transfer operon protein
Probab=21.51 E-value=1.6e+02 Score=20.64 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcceEEEEeCCchHHHHHHH
Q 040601 63 IRKFLKEASKMYEIYLCTTGIRSYAVMMA 91 (97)
Q Consensus 63 ~~~FL~~ls~~~ei~i~T~~~~~YA~~v~ 91 (97)
-.++|+.+++.|-+++|..|.-.|+..-.
T Consensus 111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~ 139 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRSDCPYCQQQA 139 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcCCCchhHHHH
Confidence 35566667777777777766666665543
No 334
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=21.40 E-value=1.8e+02 Score=21.69 Aligned_cols=29 Identities=10% Similarity=-0.073 Sum_probs=23.7
Q ss_pred HHHHHHH-hhcceEEEEeCCchHHHHHHHH
Q 040601 64 RKFLKEA-SKMYEIYLCTTGIRSYAVMMAK 92 (97)
Q Consensus 64 ~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~ 92 (97)
.+|.+.+ +...++++||-+.++-++..++
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~ 264 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNEPWLFSLLWC 264 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHh
Confidence 4677777 4589999999999998888775
No 335
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=21.19 E-value=1.3e+02 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=11.8
Q ss_pred ecchHHHHHHHHhhc
Q 040601 59 LRPYIRKFLKEASKM 73 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~ 73 (97)
.+||...+|+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~ 121 (124)
T cd02955 107 GRPGFKTVLEKIREL 121 (124)
T ss_pred CCcCHHHHHHHHHHH
Confidence 568999999888654
No 336
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=21.09 E-value=1e+02 Score=22.71 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.8
Q ss_pred ecchHHHHHHHHh-hcceEEEEeCCch
Q 040601 59 LRPYIRKFLKEAS-KMYEIYLCTTGIR 84 (97)
Q Consensus 59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~ 84 (97)
+||.+.++++.+. ....+.|.|||..
T Consensus 85 L~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 85 LHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccHHHHHHHHHHcCCeEEEecCcee
Confidence 5799999999995 4667999999974
No 337
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.90 E-value=2.1e+02 Score=19.14 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=19.5
Q ss_pred ecchHHHHHHHHhhc--ceEEEEeCC-----------chHHHHHHHHhhCC
Q 040601 59 LRPYIRKFLKEASKM--YEIYLCTTG-----------IRSYAVMMAKLLDL 96 (97)
Q Consensus 59 ~RP~~~~FL~~ls~~--~ei~i~T~~-----------~~~YA~~v~~~LDP 96 (97)
.+.++.+++++++.+ ++++-.... ...+++.+++.|.|
T Consensus 16 ~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~ 66 (157)
T PRK00103 16 LKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPK 66 (157)
T ss_pred HHHHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCC
Confidence 345566666666543 333333222 24566666666554
No 338
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=20.85 E-value=47 Score=24.21 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=11.6
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
-+.++.+|++|+|.=
T Consensus 25 a~~G~rVLlID~DpQ 39 (290)
T CHL00072 25 ARRGKKVLQIGCDPK 39 (290)
T ss_pred HHCCCeEEEEeccCC
Confidence 356788999999943
No 339
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=20.74 E-value=42 Score=21.65 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=11.9
Q ss_pred cCCCCceEEEeCCCe
Q 040601 3 YRQKKLHLVLDLDHT 17 (97)
Q Consensus 3 l~~~k~~LVLDLDeT 17 (97)
-++++.++++|+|-.
T Consensus 25 ~~~g~~vllvD~D~~ 39 (179)
T cd02036 25 AQLGYKVVLIDADLG 39 (179)
T ss_pred HhCCCeEEEEeCCCC
Confidence 356789999999953
No 340
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.41 E-value=2.1e+02 Score=20.13 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHH-hh-cceEEEEeCCchHHHHHHHHh
Q 040601 65 KFLKEA-SK-MYEIYLCTTGIRSYAVMMAKL 93 (97)
Q Consensus 65 ~FL~~l-s~-~~ei~i~T~~~~~YA~~v~~~ 93 (97)
+|++.+ .. .+.+++||-..++-++..++.
T Consensus 199 ~~v~~~~~~~G~~v~vWTVnd~~~~~~l~~~ 229 (237)
T cd08585 199 PFVTLARALLGMPVIVWTVRTEEDIARLKQY 229 (237)
T ss_pred HHHHHHHHhcCCcEEEEeCCCHHHHHHHHHh
Confidence 577777 35 899999999999988887763
No 341
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=20.32 E-value=1.2e+02 Score=19.62 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.4
Q ss_pred EecchHHHHHHHHhhcceEEEEe
Q 040601 58 KLRPYIRKFLKEASKMYEIYLCT 80 (97)
Q Consensus 58 ~~RP~~~~FL~~ls~~~ei~i~T 80 (97)
..||++.++|+.+.+.-.|+|+.
T Consensus 45 ~~Rp~~~~ll~~~~~gd~lvv~~ 67 (146)
T cd03767 45 LDRPELFRLLDDAQSGDVLLVEQ 67 (146)
T ss_pred CCCHHHHHHHHHhhCCCEEEEEe
Confidence 36999999999998774455544
No 342
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.31 E-value=53 Score=22.54 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=11.1
Q ss_pred CCCCceEEEeCCC
Q 040601 4 RQKKLHLVLDLDH 16 (97)
Q Consensus 4 ~~~k~~LVLDLDe 16 (97)
++++.+|++|+|.
T Consensus 28 ~~g~~VlliD~D~ 40 (246)
T TIGR03371 28 LLGEPVLAIDLDP 40 (246)
T ss_pred hCCCcEEEEeCCC
Confidence 4678899999995
No 343
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=20.16 E-value=82 Score=19.70 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.8
Q ss_pred chHHHHHHHHhhCCC
Q 040601 83 IRSYAVMMAKLLDLK 97 (97)
Q Consensus 83 ~~~YA~~v~~~LDP~ 97 (97)
...+|+...+.|||+
T Consensus 43 Le~~addL~nsLdP~ 57 (96)
T PRK00965 43 LEALADDLENSLDPR 57 (96)
T ss_pred HHHHHHHHHhccCCC
Confidence 367999999999995
Done!