BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040602
MNSMSFLLNLHHRSVFMKSLPSLLWRSVMVGVVVNILTPFFNQTIDASLSLFVDSLDLLD
FSTDELSCLYTFVFNKTRKLNGSGDLSSDLRTWLSAALINHETCIDGFDGTNSIVKELLT
MVHPSPNQWSNGFSNSNSGGKGCGGGGKSINGVQGDVVVAADGTWNFTKIMDTVLATKDY
NMKRFVIYIKRGLIPLPHWDRLFVAVFLHLLSEMTETLMNSMRFLLNLHYKSVFMKSLPS
LLWRSVMVGVVVNVLTPFFNPTIYASLSLFVDMALFF

High Scoring Gene Products

Symbol, full name Information P value
AT3G43270 protein from Arabidopsis thaliana 8.8e-15
PME44
pectin methylesterase 44
protein from Arabidopsis thaliana 1.8e-14
PMEPCRF
pectin methylesterase PCR fragment F
protein from Arabidopsis thaliana 0.00055
AT3G05620 protein from Arabidopsis thaliana 0.00094

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040602
        (277 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084751 - symbol:AT3G43270 species:3702 "Arabi...   149  8.8e-15   2
TAIR|locus:2125949 - symbol:PME44 "pectin methylesterase ...   145  1.8e-14   2
TAIR|locus:2154277 - symbol:PMEPCRF "pectin methylesteras...   101  0.00055   2
TAIR|locus:2078047 - symbol:AT3G05620 species:3702 "Arabi...   100  0.00094   2


>TAIR|locus:2084751 [details] [associations]
            symbol:AT3G43270 species:3702 "Arabidopsis thaliana"
            [GO:0004857 "enzyme inhibitor activity" evidence=IEA] [GO:0005618
            "cell wall" evidence=IEA] [GO:0009505 "plant-type cell wall"
            evidence=ISS;IDA] [GO:0030599 "pectinesterase activity"
            evidence=IEA;ISS] [GO:0042545 "cell wall modification"
            evidence=IEA] [GO:0006865 "amino acid transport" evidence=RCA]
            [GO:0015824 "proline transport" evidence=RCA] InterPro:IPR000070
            InterPro:IPR006501 Pfam:PF01095 Pfam:PF04043 SMART:SM00856
            UniPathway:UPA00545 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0005576 GO:GO:0004857 GO:GO:0045490 GO:GO:0009505
            Gene3D:2.160.20.10 InterPro:IPR012334 InterPro:IPR011050
            SUPFAM:SSF51126 GO:GO:0043086 EMBL:AL353871 GO:GO:0042545
            GO:GO:0030599 Gene3D:1.20.140.40 SUPFAM:SSF101148
            TIGRFAMs:TIGR01614 eggNOG:COG4677 HOGENOM:HOG000217409
            GO:GO:0045330 PROSITE:PS00800 PROSITE:PS00503 KO:K01051 HSSP:P14280
            InterPro:IPR018040 EMBL:AY070071 EMBL:AY096694 EMBL:AY065349
            EMBL:AY096720 IPI:IPI00547727 IPI:IPI00929955 PIR:T49241
            RefSeq:NP_189913.3 UniGene:At.28622 ProteinModelPortal:Q9LXK7
            SMR:Q9LXK7 STRING:Q9LXK7 PaxDb:Q9LXK7 PRIDE:Q9LXK7
            EnsemblPlants:AT3G43270.1 GeneID:823402 KEGG:ath:AT3G43270
            GeneFarm:312 TAIR:At3g43270 InParanoid:Q9LXK7 OMA:KFPSWVK
            PhylomeDB:Q9LXK7 ProtClustDB:PLN02201 Genevestigator:Q9LXK7
            Uniprot:Q9LXK7
        Length = 527

 Score = 149 (57.5 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
 Identities = 25/41 (60%), Positives = 35/41 (85%)

Query:    79 KLNGSGDLSSDLRTWLSAALINHETCIDGFDGTNSIVKELL 119
             K N +GD+ SDLRTW+SAAL N +TC+DGF+GTN I+K+++
Sbjct:   108 KDNSTGDVGSDLRTWISAALSNQDTCLDGFEGTNGIIKKIV 148

 Score = 95 (38.5 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query:   164 TWNFTKIMDTVLATKDYNMKRFVIYIKRGL 193
             T NFT I D VLA  DY+ KR+VI++KRG+
Sbjct:   222 TGNFTTISDAVLAAPDYSTKRYVIHVKRGV 251


>TAIR|locus:2125949 [details] [associations]
            symbol:PME44 "pectin methylesterase 44" species:3702
            "Arabidopsis thaliana" [GO:0004857 "enzyme inhibitor activity"
            evidence=IEA] [GO:0005576 "extracellular region" evidence=ISM]
            [GO:0005618 "cell wall" evidence=IEA] [GO:0009505 "plant-type cell
            wall" evidence=ISS] [GO:0030599 "pectinesterase activity"
            evidence=IEA;ISS] [GO:0042545 "cell wall modification"
            evidence=IEA] InterPro:IPR000070 InterPro:IPR006501 Pfam:PF01095
            Pfam:PF04043 SMART:SM00856 UniPathway:UPA00545 GO:GO:0005618
            GO:GO:0005576 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0004857
            EMBL:AL161583 GO:GO:0045490 Gene3D:2.160.20.10 InterPro:IPR012334
            InterPro:IPR011050 SUPFAM:SSF51126 GO:GO:0043086 GO:GO:0042545
            GO:GO:0030599 Gene3D:1.20.140.40 SUPFAM:SSF101148 EMBL:AL035525
            eggNOG:COG4677 HOGENOM:HOG000217409 GO:GO:0045330 PROSITE:PS00800
            PROSITE:PS00503 KO:K01051 HSSP:P14280 InterPro:IPR018040
            ProtClustDB:PLN02201 EMBL:AF378892 EMBL:BT029770 EMBL:AK222013
            IPI:IPI00546847 PIR:T05202 RefSeq:NP_567917.4 UniGene:At.2679
            UniGene:At.74199 ProteinModelPortal:Q9SMY7 SMR:Q9SMY7 PaxDb:Q9SMY7
            PRIDE:Q9SMY7 EnsemblPlants:AT4G33220.1 GeneID:829458
            KEGG:ath:AT4G33220 TAIR:At4g33220 InParanoid:Q9SMY7 OMA:NFTKIMD
            PhylomeDB:Q9SMY7 Genevestigator:Q9SMY7 Uniprot:Q9SMY7
        Length = 525

 Score = 145 (56.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query:    75 NKTRKLNGSGDLSSDLRTWLSAALINHETCIDGFDGTNSIVKELL 119
             N   K NG+GD+ SD RTWLSAAL N  TC++GFDGT+ +VK L+
Sbjct:    92 NPKGKGNGTGDVGSDTRTWLSAALSNQATCMEGFDGTSGLVKSLV 136

 Score = 98 (39.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query:   164 TWNFTKIMDTVLATKDYNMKRFVIYIKRGL 193
             T NFTKIMD +    DY+  RFVIYIK+GL
Sbjct:   220 TGNFTKIMDAIKKAPDYSSTRFVIYIKKGL 249


>TAIR|locus:2154277 [details] [associations]
            symbol:PMEPCRF "pectin methylesterase PCR fragment F"
            species:3702 "Arabidopsis thaliana" [GO:0004857 "enzyme inhibitor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0030599 "pectinesterase activity" evidence=IEA;ISS] [GO:0042545
            "cell wall modification" evidence=IEA] [GO:0006612 "protein
            targeting to membrane" evidence=RCA] [GO:0006833 "water transport"
            evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
            [GO:0009750 "response to fructose stimulus" evidence=RCA]
            [GO:0009963 "positive regulation of flavonoid biosynthetic process"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] InterPro:IPR000070 InterPro:IPR006501
            Pfam:PF01095 Pfam:PF04043 SMART:SM00856 UniPathway:UPA00545
            GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0004857 GO:GO:0045490 Gene3D:2.160.20.10 InterPro:IPR012334
            InterPro:IPR011050 SUPFAM:SSF51126 EMBL:AB013388 GO:GO:0043086
            GO:GO:0042545 GO:GO:0030599 Gene3D:1.20.140.40 SUPFAM:SSF101148
            TIGRFAMs:TIGR01614 HSSP:P83218 eggNOG:COG4677 HOGENOM:HOG000217409
            GO:GO:0045330 PROSITE:PS00800 PROSITE:PS00503 InterPro:IPR018040
            ProtClustDB:PLN02484 EMBL:AF360340 EMBL:AY051077 IPI:IPI00530003
            RefSeq:NP_200149.1 UniGene:At.24561 UniGene:At.29558
            ProteinModelPortal:Q9FK05 SMR:Q9FK05 PaxDb:Q9FK05 PRIDE:Q9FK05
            EnsemblPlants:AT5G53370.1 GeneID:835418 KEGG:ath:AT5G53370
            GeneFarm:298 TAIR:At5g53370 InParanoid:Q9FK05 OMA:RVVYMMS
            PhylomeDB:Q9FK05 Genevestigator:Q9FK05 Uniprot:Q9FK05
        Length = 587

 Score = 101 (40.6 bits), Expect = 0.00055, Sum P(2) = 0.00055
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query:    83 SGDLS-SDLRTWLSAALINHETCIDGFD 109
             SGD S SD+ TWLS+A+ NH+TC DGFD
Sbjct:   166 SGDESHSDVMTWLSSAMTNHDTCTDGFD 193

 Score = 53 (23.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query:   167 FTKIMDTVLATKDYNMKRFVIYIKRG 192
             F  I + +    +++ +RFVIY+K G
Sbjct:   284 FKTIAEAIKKAPEHSSRRFVIYVKAG 309


>TAIR|locus:2078047 [details] [associations]
            symbol:AT3G05620 species:3702 "Arabidopsis thaliana"
            [GO:0004857 "enzyme inhibitor activity" evidence=IEA] [GO:0005618
            "cell wall" evidence=IEA] [GO:0009505 "plant-type cell wall"
            evidence=ISS] [GO:0030599 "pectinesterase activity"
            evidence=IEA;ISS] [GO:0042545 "cell wall modification"
            evidence=IEA] InterPro:IPR000070 InterPro:IPR006501 Pfam:PF01095
            Pfam:PF04043 SMART:SM00856 UniPathway:UPA00545 GO:GO:0005618
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005576 GO:GO:0004857
            GO:GO:0045490 Gene3D:2.160.20.10 InterPro:IPR012334
            InterPro:IPR011050 SUPFAM:SSF51126 GO:GO:0043086 GO:GO:0042545
            GO:GO:0030599 Gene3D:1.20.140.40 SUPFAM:SSF101148
            TIGRFAMs:TIGR01614 EMBL:AC011620 HSSP:P83218 eggNOG:COG4677
            HOGENOM:HOG000217409 GO:GO:0045330 PROSITE:PS00800 PROSITE:PS00503
            InterPro:IPR018040 IPI:IPI00526672 RefSeq:NP_187213.1
            UniGene:At.53193 ProteinModelPortal:Q9M9W7 SMR:Q9M9W7
            EnsemblPlants:AT3G05620.1 GeneID:819728 KEGG:ath:AT3G05620
            GeneFarm:334 TAIR:At3g05620 InParanoid:Q9M9W7 OMA:NQDTCLE
            PhylomeDB:Q9M9W7 ProtClustDB:PLN02506 Genevestigator:Q9M9W7
            Uniprot:Q9M9W7
        Length = 543

 Score = 100 (40.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query:    81 NGSGDLSS---DLRTWLSAALINHETCIDGFDGTNSIVKELL 119
             +GS D ++   +L+TWLSAA+ N +TC++GF+GT    +EL+
Sbjct:   139 DGSHDAAAAGGNLKTWLSAAMSNQDTCLEGFEGTERKYEELI 180

 Score = 51 (23.0 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query:   167 FTKIMDTVLATKDYNMKRFVIYIKRGL 193
             +  I + +    +++ KR+VIY+K+G+
Sbjct:   251 YRTINEAINEAPNHSTKRYVIYVKKGV 277


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.139   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       221   0.00095  112 3  11 22  0.41    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  181 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.84u 0.09s 16.93t   Elapsed:  00:00:01
  Total cpu time:  16.84u 0.09s 16.93t   Elapsed:  00:00:01
  Start:  Sat May 11 02:46:28 2013   End:  Sat May 11 02:46:29 2013

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