Query 040602
Match_columns 277
No_of_seqs 203 out of 1031
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x91_A Invertase/pectin methyl 99.6 2.8E-16 9.6E-21 129.9 8.4 85 18-111 31-122 (153)
2 1xg2_B Pectinesterase inhibito 99.6 3.8E-16 1.3E-20 128.7 8.9 85 18-111 31-122 (153)
3 1xg2_A Pectinesterase 1; prote 99.6 6.9E-16 2.3E-20 144.6 8.4 70 153-228 1-76 (317)
4 1gq8_A Pectinesterase; hydrola 99.6 1E-15 3.5E-20 143.6 8.7 71 152-228 4-80 (319)
5 2cj4_A Invertase inhibitor; pr 99.6 1.1E-14 3.6E-19 120.2 9.7 83 19-110 33-123 (150)
6 2nsp_A Pectinesterase A; micha 99.5 2.6E-14 8.9E-19 135.1 7.1 66 153-225 2-73 (342)
7 3grh_A YBHC, acyl-COA thioeste 99.5 4.6E-14 1.6E-18 136.7 6.8 64 153-222 73-145 (422)
8 3uw0_A Pectinesterase; right-h 99.4 5.8E-14 2E-18 133.9 6.2 66 153-225 29-99 (364)
9 1ru4_A Pectate lyase, PEL9A; p 93.2 0.14 4.7E-06 49.0 6.5 57 153-220 13-95 (400)
10 1dbg_A Chondroitinase B; beta 89.5 0.28 9.7E-06 48.4 4.5 52 156-222 25-86 (506)
11 2pyg_A Poly(beta-D-mannuronate 84.9 1 3.4E-05 41.3 5.1 51 165-223 17-79 (377)
12 2inu_A Insulin fructotransfera 53.8 8.7 0.0003 37.0 3.5 38 170-207 38-86 (410)
13 2koe_A Human cannabinoid recep 44.6 3.5 0.00012 25.5 -0.6 16 253-268 10-25 (40)
14 3eqn_A Glucan 1,3-beta-glucosi 37.1 40 0.0014 34.9 5.5 51 166-222 65-127 (758)
15 3dxr_B Mitochondrial import in 26.0 1.4E+02 0.0046 22.8 5.6 31 44-74 56-86 (95)
16 1r7c_A Genome polyprotein; mem 25.7 32 0.0011 21.4 1.6 12 87-98 16-27 (31)
No 1
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=99.64 E-value=2.8e-16 Score=129.91 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=69.4
Q ss_pred hcChHHHHHHHHHHHHHhhhchhh--hcc----cc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCchhH
Q 040602 18 KSLPSLLWRSVMVGVVVNILTPFF--NQT----ID-ASLSLFVDSLDLLDFSTDELSCLYTFVFNKTRKLNGSGDLSSDL 90 (277)
Q Consensus 18 ~~~p~~l~~~a~~~~~~~~~~~~~--~~l----~~-~~k~AL~DC~eLlddSid~L~~Sl~~L~~~~~~~~~~~~~~~Dv 90 (277)
..+|..+++.++..++.++.+... ..+ .+ ..+.|++||.|+|++++++|++++.+++. ..++|+
T Consensus 31 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~---------~~~~d~ 101 (153)
T 1x91_A 31 SANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLAS---------GDGMGM 101 (153)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCHHHH
Confidence 468999999999877776655542 112 11 22899999999999999999999999963 248999
Q ss_pred HHHHHHHHhhhhhhhhccCCC
Q 040602 91 RTWLSAALINHETCIDGFDGT 111 (277)
Q Consensus 91 qTWLSAALTnq~TClDGF~e~ 111 (277)
+||||||||||+||.|||.+.
T Consensus 102 ~t~lSaAlt~~~tC~dgf~~~ 122 (153)
T 1x91_A 102 NMKVSAALDGADTCLDDVKRL 122 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHhHHHHHhccC
Confidence 999999999999999999875
No 2
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=99.64 E-value=3.8e-16 Score=128.69 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred hcChHHHHHHHHHHHHHhhhchhh--hcc---cccc--hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCchhH
Q 040602 18 KSLPSLLWRSVMVGVVVNILTPFF--NQT---IDAS--LSLFVDSLDLLDFSTDELSCLYTFVFNKTRKLNGSGDLSSDL 90 (277)
Q Consensus 18 ~~~p~~l~~~a~~~~~~~~~~~~~--~~l---~~~~--k~AL~DC~eLlddSid~L~~Sl~~L~~~~~~~~~~~~~~~Dv 90 (277)
..+|..+++.++..++.++.+... ..+ ..++ +.|++||.|+|++++++|++++.+++. ...+|+
T Consensus 31 ~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~---------~~~~d~ 101 (153)
T 1xg2_B 31 SKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTS---------GDYNSL 101 (153)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHH
Confidence 458999999999877766655542 112 1122 899999999999999999999999964 247999
Q ss_pred HHHHHHHHhhhhhhhhccCCC
Q 040602 91 RTWLSAALINHETCIDGFDGT 111 (277)
Q Consensus 91 qTWLSAALTnq~TClDGF~e~ 111 (277)
+|||||||||++||.|||.+.
T Consensus 102 ~t~lSaAlt~~~tC~dgf~~~ 122 (153)
T 1xg2_B 102 NIYASAAFDGAGTCEDSFEGP 122 (153)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHhcccchHHHHhccC
Confidence 999999999999999999865
No 3
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}
Probab=99.61 E-value=6.9e-16 Score=144.64 Aligned_cols=70 Identities=27% Similarity=0.427 Sum_probs=64.5
Q ss_pred cceeEEEecCCCcCcccHHHHHHHhhcCCCceEEEEEeccc------ccccCccEEEEeccccCCCCCCCeEEEcccccc
Q 040602 153 VQGDVVVAADGTWNFTKIMDTVLATKDYNMKRFVIYIKRGL------IPLPHWDRLFVAVFLHLLSEMTETLMNSMRFLL 226 (277)
Q Consensus 153 ~~~~vvVa~dGsg~F~TIq~Aida~P~~~~~~~vI~Ik~Gv------I~~~k~nI~l~Gd~~~~~~g~~~TiIt~~~~~~ 226 (277)
++++++|++||+|+|+|||+||+++|+++.+|++|+|++|+ |++.|+||+|+|+ |+++|||+|+++..
T Consensus 1 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~------g~~~tiI~~~~~~~ 74 (317)
T 1xg2_A 1 IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD------GMYATTITGSLNVV 74 (317)
T ss_dssp CCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEES------CTTTEEEEECCCTT
T ss_pred CCceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEc------CCCCcEEEeccccc
Confidence 35789999999999999999999999999999999999999 8888999999999 89999999998765
Q ss_pred cc
Q 040602 227 NL 228 (277)
Q Consensus 227 ~~ 228 (277)
++
T Consensus 75 ~g 76 (317)
T 1xg2_A 75 DG 76 (317)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 4
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5
Probab=99.60 E-value=1e-15 Score=143.56 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=65.4
Q ss_pred CcceeEEEecCCCcCcccHHHHHHHhhcCCCceEEEEEeccc------ccccCccEEEEeccccCCCCCCCeEEEccccc
Q 040602 152 GVQGDVVVAADGTWNFTKIMDTVLATKDYNMKRFVIYIKRGL------IPLPHWDRLFVAVFLHLLSEMTETLMNSMRFL 225 (277)
Q Consensus 152 ~~~~~vvVa~dGsg~F~TIq~Aida~P~~~~~~~vI~Ik~Gv------I~~~k~nI~l~Gd~~~~~~g~~~TiIt~~~~~ 225 (277)
.++++++|++||+|+|+|||+||+++|+++.+|++|+|++|+ |++.|+||+|+|+ |+++|||+|+++.
T Consensus 4 ~~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~------g~~~tiI~~~~~~ 77 (319)
T 1gq8_A 4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD------GRTSTIITASKNV 77 (319)
T ss_dssp SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEES------CTTTEEEEECCCT
T ss_pred CccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEc------CCCccEEEecccc
Confidence 367899999999999999999999999999999999999999 8888999999999 8999999999876
Q ss_pred ccc
Q 040602 226 LNL 228 (277)
Q Consensus 226 ~~~ 228 (277)
.++
T Consensus 78 ~~g 80 (319)
T 1gq8_A 78 QDG 80 (319)
T ss_dssp TTT
T ss_pred cCC
Confidence 543
No 5
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=99.56 E-value=1.1e-14 Score=120.21 Aligned_cols=83 Identities=7% Similarity=-0.080 Sum_probs=67.2
Q ss_pred cChHHHHHHHHHHHHHhhhchhh--hcc---c--ccchHHHHHHHHHHHHHH-HHHHHHHHHHhcccccCCCCCCCchhH
Q 040602 19 SLPSLLWRSVMVGVVVNILTPFF--NQT---I--DASLSLFVDSLDLLDFST-DELSCLYTFVFNKTRKLNGSGDLSSDL 90 (277)
Q Consensus 19 ~~p~~l~~~a~~~~~~~~~~~~~--~~l---~--~~~k~AL~DC~eLlddSi-d~L~~Sl~~L~~~~~~~~~~~~~~~Dv 90 (277)
.+|..+++.++..+..++.+... ..+ . ...+.|++||.|+|++++ ++|++++.+++. ...+|+
T Consensus 33 ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~~~~~~~~al~dC~e~y~~a~~~~L~~a~~~l~~---------~~~~~~ 103 (150)
T 2cj4_A 33 GDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTK---------GDPKFA 103 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHHHTHHHHHHHHHHH---------SCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHH
Confidence 48999999999876665555442 112 1 223899999999999999 799999999964 247899
Q ss_pred HHHHHHHHhhhhhhhhccCC
Q 040602 91 RTWLSAALINHETCIDGFDG 110 (277)
Q Consensus 91 qTWLSAALTnq~TClDGF~e 110 (277)
+||||||+||++||.|||.+
T Consensus 104 ~t~lsaAlt~~~tC~dgf~~ 123 (150)
T 2cj4_A 104 EDGMVGSSGDAQECEEYFKG 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999975
No 6
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A
Probab=99.49 E-value=2.6e-14 Score=135.14 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=60.4
Q ss_pred cceeEEEe--cCCCcCcccHHHHHHHhhcCCCceEEEEEeccc----ccccCccEEEEeccccCCCCCCCeEEEccccc
Q 040602 153 VQGDVVVA--ADGTWNFTKIMDTVLATKDYNMKRFVIYIKRGL----IPLPHWDRLFVAVFLHLLSEMTETLMNSMRFL 225 (277)
Q Consensus 153 ~~~~vvVa--~dGsg~F~TIq~Aida~P~~~~~~~vI~Ik~Gv----I~~~k~nI~l~Gd~~~~~~g~~~TiIt~~~~~ 225 (277)
..++++|+ +||+|+|+|||+||+++|+++ +|++|+||+|+ |.+.|+||+|+|+ |+++|||+|++.+
T Consensus 2 ~~~~~vV~~~~~g~g~f~TIq~Ai~aap~~~-~~~~I~I~~G~Y~E~V~I~k~~Itl~G~------g~~~tiI~~~~~~ 73 (342)
T 2nsp_A 2 TTYNAVVSKSSSDGKTFKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNNLHLKGE------SRNGAVIAAATAA 73 (342)
T ss_dssp CCCSEEECSCSSSCSCBSSHHHHHHTSCSSS-SCEEEEECSEEEECCEEECSTTEEEEES------CTTTEEEEECCCT
T ss_pred CccEEEEccCCCCCCCcchHHHHHHhcccCC-CcEEEEEeCCEEEEEEEEecCeEEEEec------CCCCeEEEecccc
Confidence 35789999 999999999999999999987 89999999999 6667899999999 8999999999764
No 7
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}
Probab=99.46 E-value=4.6e-14 Score=136.72 Aligned_cols=64 Identities=23% Similarity=0.136 Sum_probs=58.2
Q ss_pred cceeEEEecCCCc--CcccHHHHHHHhh-cCCCceEEEEEeccc------ccccCccEEEEeccccCCCCCCCeEEEcc
Q 040602 153 VQGDVVVAADGTW--NFTKIMDTVLATK-DYNMKRFVIYIKRGL------IPLPHWDRLFVAVFLHLLSEMTETLMNSM 222 (277)
Q Consensus 153 ~~~~vvVa~dGsg--~F~TIq~Aida~P-~~~~~~~vI~Ik~Gv------I~~~k~nI~l~Gd~~~~~~g~~~TiIt~~ 222 (277)
.+++++|++||+| +|+||||||+++| .++.+|++||||+|+ ||+.|+||+|+|+ |+++|+|+..
T Consensus 73 ~~~~ivVa~dGsG~~~f~TIqeAVdaap~~~~~~r~vI~Ik~GvY~E~V~Ip~~K~~ItL~G~------G~~~t~Iti~ 145 (422)
T 3grh_A 73 AQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGT------GEKPIDVKIG 145 (422)
T ss_dssp SSCSEEECSTTCTTCCBSSHHHHHHHHHTTCCSSCEEEEECSEEEESCEEECCCSSCEEEEEC------SSSGGGEEEE
T ss_pred CCccEEEeCCCCCCcCcCCHHHHHHhchhcCCCccEEEEEeCCeEeeeEEecCCCCcEEEEec------cCCCceEEEe
Confidence 5689999999998 9999999999997 467889999999999 8889999999999 8888888754
No 8
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=5.8e-14 Score=133.92 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=47.6
Q ss_pred cceeEEEecC-CCcCcccHHHHHHHhhcCCCceEEEEEeccc----ccccCccEEEEeccccCCCCCCCeEEEccccc
Q 040602 153 VQGDVVVAAD-GTWNFTKIMDTVLATKDYNMKRFVIYIKRGL----IPLPHWDRLFVAVFLHLLSEMTETLMNSMRFL 225 (277)
Q Consensus 153 ~~~~vvVa~d-Gsg~F~TIq~Aida~P~~~~~~~vI~Ik~Gv----I~~~k~nI~l~Gd~~~~~~g~~~TiIt~~~~~ 225 (277)
..++++|++| |+|+|+|||+||+++|+++ +|++|+|++|+ |.+.|+||+|+|+ |+++|||+|++++
T Consensus 29 ~~~~~~V~~~~g~g~f~TIq~Ai~aa~~~~-~~~~I~I~~G~Y~E~v~I~k~~itl~G~------g~~~TiIt~~~~~ 99 (364)
T 3uw0_A 29 AQYNAVVSTTPQGDEFSSINAALKSAPKDD-TPFIIFLKNGVYTERLEVARSHVTLKGE------NRDGTVIGANTAA 99 (364)
T ss_dssp ---------------CCCHHHHHHHSCSSS-SCEEEEECSEEECCCEEECSTTEEEEES------CTTTEEEEECCCT
T ss_pred cCceEEEcCCCCCCCcccHHHHHhhcccCC-CcEEEEEeCCEEEEEEEEcCCeEEEEec------CCCCeEEEccccc
Confidence 4578999999 9999999999999999986 68999999999 6667899999999 8999999999865
No 9
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9
Probab=93.21 E-value=0.14 Score=48.99 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=42.4
Q ss_pred cceeEEEecCCCc---------CcccHHHHHHHhhcCCCceEEEEEeccccc------------ccCc-----cEEEEec
Q 040602 153 VQGDVVVAADGTW---------NFTKIMDTVLATKDYNMKRFVIYIKRGLIP------------LPHW-----DRLFVAV 206 (277)
Q Consensus 153 ~~~~vvVa~dGsg---------~F~TIq~Aida~P~~~~~~~vI~Ik~GvI~------------~~k~-----nI~l~Gd 206 (277)
...++.|+++|+. -| |||+|+++++.+ -+|+|++|+.. ..|. -|+|.|.
T Consensus 13 ~~~~~yVsp~Gsd~~~G~t~~~P~-tiq~Ai~~a~pG----dtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~ 87 (400)
T 1ru4_A 13 TKRIYYVAPNGNSSNNGSSFNAPM-SFSAAMAAVNPG----ELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAA 87 (400)
T ss_dssp CSCEEEECTTCCTTCCSSSTTSCB-CHHHHHHHCCTT----CEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEG
T ss_pred CccEEEEcCCCCCCCCCccccCCc-cHHHHHhhCCCC----CEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEe
Confidence 3457899998863 59 999999999765 26999998722 2222 2999998
Q ss_pred cccCCCCCCCeEEE
Q 040602 207 FLHLLSEMTETLMN 220 (277)
Q Consensus 207 ~~~~~~g~~~TiIt 220 (277)
+.+++||.
T Consensus 88 ------~g~~~vI~ 95 (400)
T 1ru4_A 88 ------NCGRAVFD 95 (400)
T ss_dssp ------GGCCEEEE
T ss_pred ------cCCCCEEe
Confidence 55688887
No 10
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=89.52 E-value=0.28 Score=48.36 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=39.0
Q ss_pred eEEEecCCCcCcccHHHHHHHhhcCCCceEEEEEeccc-----ccc-----cCccEEEEeccccCCCCCCCeEEEcc
Q 040602 156 DVVVAADGTWNFTKIMDTVLATKDYNMKRFVIYIKRGL-----IPL-----PHWDRLFVAVFLHLLSEMTETLMNSM 222 (277)
Q Consensus 156 ~vvVa~dGsg~F~TIq~Aida~P~~~~~~~vI~Ik~Gv-----I~~-----~k~nI~l~Gd~~~~~~g~~~TiIt~~ 222 (277)
++.|+ ++.+||+||++++.+ -+|+|++|+ |.. ....|++.|. +.++++|.|.
T Consensus 25 ~i~V~-----~~~~Lq~Ai~~A~pG----DtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~------~~~~~vi~G~ 86 (506)
T 1dbg_A 25 GQVVA-----SNETLYQVVKEVKPG----GLVQIADGTYKDVQLIVSNSGKSGLPITIKAL------NPGKVFFTGD 86 (506)
T ss_dssp -CEEC-----SHHHHHHHHHHCCTT----CEEEECSEEEETCEEEECCCCBTTBCEEEEES------STTSEEEEES
T ss_pred EEEeC-----CHHHHHHHHHhCCCC----CEEEECCCEEecceEEEecCCcCCCCEEEECC------CCCccEEeCC
Confidence 35665 588999999999877 479999998 332 1455999997 6667888875
No 11
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Probab=84.89 E-value=1 Score=41.27 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=38.9
Q ss_pred cCcccHHHHHHHhhcCCCceEEEEEeccc--cc---------c-cCccEEEEeccccCCCCCCCeEEEccc
Q 040602 165 WNFTKIMDTVLATKDYNMKRFVIYIKRGL--IP---------L-PHWDRLFVAVFLHLLSEMTETLMNSMR 223 (277)
Q Consensus 165 g~F~TIq~Aida~P~~~~~~~vI~Ik~Gv--I~---------~-~k~nI~l~Gd~~~~~~g~~~TiIt~~~ 223 (277)
.+-..||+||++++.. ..-+|||-+|+ +. . -+++++|.|+ |+++|+|....
T Consensus 17 ddt~aiq~Ai~~a~~~--gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~------g~~~t~l~~~~ 79 (377)
T 2pyg_A 17 DDRASIQAAIDAAYAA--GGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGA------GMGETVIKLID 79 (377)
T ss_dssp ECHHHHHHHHHHHHHT--TSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEES------SBTTEEEEECT
T ss_pred chHHHHHHHHHHHHhc--CCCEEEECCeEEEEcccccCCcccEEecCCeEEEEc------CCCCcEEEecC
Confidence 4578899999999864 34578999998 42 1 3678999999 88888887543
No 12
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*
Probab=53.80 E-value=8.7 Score=37.01 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=27.0
Q ss_pred HHHHHHHhhcC-----CCceEEEEEeccc------ccccCccEEEEecc
Q 040602 170 IMDTVLATKDY-----NMKRFVIYIKRGL------IPLPHWDRLFVAVF 207 (277)
Q Consensus 170 Iq~Aida~P~~-----~~~~~vI~Ik~Gv------I~~~k~nI~l~Gd~ 207 (277)
|+++|+.+|.. -+.-=+|+|.+|. |.+.||||+|.|++
T Consensus 38 i~~~ia~~~~~~~~~~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~ 86 (410)
T 2inu_A 38 INDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFG 86 (410)
T ss_dssp HHHHHHHHHHHCCCTTSCCCEEEECCSEEEEECSCEEECCTTEEEECSC
T ss_pred HHHHHHHhhcccccccCCCCCEEEECCCeeccCCcEEEecCcEEEEecC
Confidence 44455555541 1223599999999 77899999999984
No 13
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=44.61 E-value=3.5 Score=25.53 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=12.0
Q ss_pred eecccccChhhhhhhh
Q 040602 253 NVLTPFFNPTIYASLS 268 (277)
Q Consensus 253 ~~~~~~~~~~~~~~~~ 268 (277)
-.+.|.+||.||+-.+
T Consensus 10 ~~~ns~lNPiIY~~~~ 25 (40)
T 2koe_A 10 CLLNSTVNPIIYALRS 25 (40)
T ss_dssp HHHHHHSSTTTTBTTB
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3457889999998653
No 14
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*
Probab=37.08 E-value=40 Score=34.88 Aligned_cols=51 Identities=8% Similarity=0.116 Sum_probs=36.6
Q ss_pred CcccHHHHHHHhhcCC-------CceEEEEEeccc--ccc---cCccEEEEeccccCCCCCCCeEEEcc
Q 040602 166 NFTKIMDTVLATKDYN-------MKRFVIYIKRGL--IPL---PHWDRLFVAVFLHLLSEMTETLMNSM 222 (277)
Q Consensus 166 ~F~TIq~Aida~P~~~-------~~~~vI~Ik~Gv--I~~---~k~nI~l~Gd~~~~~~g~~~TiIt~~ 222 (277)
|=.-||+||+++.... ..+-+|||-+|. |.. -+.++.|+|+ +...++|...
T Consensus 65 DT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~------~~~~pvIka~ 127 (758)
T 3eqn_A 65 DTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGD------AKNLPTLLAA 127 (758)
T ss_dssp CHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEEC------SSSCCEEEEC
T ss_pred hHHHHHHHHHHhhhcccccccccccceEEEECCceEEEcccEEccCCeEEEec------CCCCCeEecC
Confidence 3567999999986432 345789999998 221 3689999999 7766777543
No 15
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=26.01 E-value=1.4e+02 Score=22.81 Aligned_cols=31 Identities=3% Similarity=-0.269 Sum_probs=25.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040602 44 TIDASLSLFVDSLDLLDFSTDELSCLYTFVF 74 (277)
Q Consensus 44 l~~~~k~AL~DC~eLlddSid~L~~Sl~~L~ 74 (277)
|+..+..++..|.+=|-++-..+.+.+.++.
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999888764
No 16
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=25.72 E-value=32 Score=21.43 Aligned_cols=12 Identities=58% Similarity=1.007 Sum_probs=8.7
Q ss_pred chhHHHHHHHHH
Q 040602 87 SSDLRTWLSAAL 98 (277)
Q Consensus 87 ~~DvqTWLSAAL 98 (277)
..|.+|||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 467788888765
Done!