BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040603
         (172 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480 OS=Arabidopsis thaliana
          GN=At1g66480 PE=1 SV=1
          Length = 225

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 1  MGNHISCTLSKPLGKHTRSAKVIFPGGEIRQIQTPIKAAELMLEKPNFFLINSRSLK-IG 59
          MGN I+           + AKV+   GE  +I+TP+ A E+  + P + L++S+++K  G
Sbjct: 1  MGNSITV--------KRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFG 52

Query: 60 QRFSPLNADEDLEPKNVYVMFPMKRATSKITATD 93
           R  PL  ++ L+PK  Y +  + +   + TA D
Sbjct: 53 VRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVD 86


>sp|B3QWS9|RSMH_CHLT3 Ribosomal RNA small subunit methyltransferase H OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=rsmH PE=3 SV=1
          Length = 321

 Score = 35.8 bits (81), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 27  GEIRQIQTPIKAA-ELMLEKPNFFLINSRSL--KIGQRFSPLNADEDLEPKNVYVMFPMK 83
           GE+ +++  ++AA E++ EK    +I+  SL  +I ++F    A ED  PK V +  P+K
Sbjct: 226 GELDELKAVLQAAHEVLSEKGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIK 285

Query: 84  RATSKI 89
            AT KI
Sbjct: 286 TATMKI 291


>sp|Q9KG49|RSIW_BACHD Anti-sigma-W factor RsiW OS=Bacillus halodurans (strain ATCC
           BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
           GN=rsiW PE=3 SV=1
          Length = 213

 Score = 34.3 bits (77), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2   GNHISCTLSKPLGKHTRSAKVIFPGGEIRQIQTPIKAAELMLE---KPNFFLINS 53
           G H++ T +  +     S +VI P GE+ Q    ++  EL++E   + N  L+NS
Sbjct: 112 GEHVTVTGTGNVSIDQESGRVIVPEGEVIQGDLVVRNGELIIEGEVQGNVLLVNS 166


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,333,118
Number of Sequences: 539616
Number of extensions: 2232173
Number of successful extensions: 5033
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5031
Number of HSP's gapped (non-prelim): 18
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)