Query 040603
Match_columns 172
No_of_seqs 178 out of 376
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 100.0 9.7E-41 2.1E-45 261.1 9.1 105 1-107 1-105 (181)
2 PF02824 TGS: TGS domain; Int 78.0 3.7 8E-05 26.9 3.5 25 20-44 1-25 (60)
3 TIGR03793 TOMM_pelo TOMM prope 77.3 3.2 6.9E-05 29.1 3.2 25 73-98 51-75 (77)
4 PF15386 Tantalus: Drosophila 60.2 5.4 0.00012 26.9 1.3 19 153-171 29-48 (61)
5 TIGR01323 nitrile_alph nitrile 50.2 19 0.00042 29.3 3.2 29 73-101 145-174 (185)
6 PRK08053 sulfur carrier protei 49.5 63 0.0014 21.2 5.2 22 23-44 3-24 (66)
7 PRK00994 F420-dependent methyl 49.4 58 0.0013 27.9 6.0 78 17-106 61-145 (277)
8 cd00178 STI Soybean trypsin in 48.6 14 0.00031 29.3 2.3 19 67-85 6-24 (172)
9 cd01668 TGS_RelA_SpoT TGS_RelA 48.6 25 0.00053 21.8 3.0 23 22-44 3-25 (60)
10 PF00197 Kunitz_legume: Trypsi 45.5 19 0.0004 28.7 2.5 20 67-86 6-25 (176)
11 PRK05659 sulfur carrier protei 45.4 21 0.00046 23.2 2.4 22 23-44 3-24 (66)
12 PRK06944 sulfur carrier protei 44.8 82 0.0018 20.2 5.5 54 23-81 3-60 (65)
13 TIGR01683 thiS thiamine biosyn 44.0 69 0.0015 20.8 4.7 55 23-81 1-59 (64)
14 cd00565 ThiS ThiaminS ubiquiti 38.8 56 0.0012 21.2 3.7 23 23-45 2-24 (65)
15 smart00452 STI Soybean trypsin 37.3 27 0.00058 27.8 2.2 19 67-85 5-23 (172)
16 PF08140 Cuticle_1: Crustacean 36.8 20 0.00042 22.2 1.0 27 22-50 5-31 (40)
17 COG1927 Mtd Coenzyme F420-depe 35.8 53 0.0011 27.8 3.7 64 34-106 75-145 (277)
18 PRK07440 hypothetical protein; 34.0 42 0.00091 22.6 2.5 23 22-44 6-28 (70)
19 PRK06083 sulfur carrier protei 30.2 70 0.0015 22.5 3.2 23 22-44 20-42 (84)
20 KOG4224 Armadillo repeat prote 30.1 23 0.00049 32.5 0.8 11 1-11 1-11 (550)
21 PRK05863 sulfur carrier protei 29.7 55 0.0012 21.5 2.4 22 23-44 3-24 (65)
22 PRK06437 hypothetical protein; 29.6 1.7E+02 0.0037 19.3 5.3 51 24-81 6-62 (67)
23 cd01667 TGS_ThrRS_N TGS _ThrRS 27.5 1E+02 0.0022 18.3 3.3 25 21-45 2-26 (61)
24 PF06200 tify: tify domain; I 26.8 47 0.001 19.9 1.5 23 21-43 8-32 (36)
25 COG2895 CysN GTPases - Sulfate 26.8 33 0.00071 31.2 1.2 65 16-80 264-336 (431)
26 cd01775 CYR1_RA Ubiquitin doma 25.5 83 0.0018 23.1 2.9 27 19-45 4-32 (97)
27 PRK08364 sulfur carrier protei 24.8 1.9E+02 0.004 19.2 4.4 49 26-82 10-66 (70)
28 COG0396 sufC Cysteine desulfur 24.0 2.8E+02 0.006 23.8 6.1 79 22-101 25-108 (251)
29 cd01616 TGS The TGS domain, na 23.7 1.3E+02 0.0028 17.6 3.3 25 21-45 2-26 (60)
30 PF08428 Rib: Rib/alpha-like r 23.2 33 0.00071 22.8 0.4 24 16-39 41-64 (65)
31 PF11211 DUF2997: Protein of u 22.0 63 0.0014 20.4 1.5 13 22-34 4-16 (48)
32 PF02979 NHase_alpha: Nitrile 20.8 52 0.0011 26.9 1.1 29 73-101 151-180 (188)
33 PRK07696 sulfur carrier protei 20.2 1E+02 0.0023 20.4 2.4 22 23-44 3-25 (67)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=100.00 E-value=9.7e-41 Score=261.15 Aligned_cols=105 Identities=39% Similarity=0.741 Sum_probs=97.4
Q ss_pred CCCcccCCcCCCCCCCCcceEEEccCCcEEEecCCccHHHHHhhCCCcEEEccCCcccCCcccCCCCCCCCCCCCeEEEE
Q 040603 1 MGNHISCTLSKPLGKHTRSAKVIFPGGEIRQIQTPIKAAELMLEKPNFFLINSRSLKIGQRFSPLNADEDLEPKNVYVMF 80 (172)
Q Consensus 1 MGN~~Sc~~~~~~~~~~~~~kVv~~dG~v~~~~~pv~aaevm~e~P~h~Vc~s~~l~~g~~~~~L~~de~L~~G~~Yfll 80 (172)
||||+||... ......++||||+||+|++|+.||+|+|||.+||+||||+++.+.+|.++++|++||+|++|++||||
T Consensus 1 MGn~~~~~~~--~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~~~~~~~~~l~~d~~L~~G~~Y~ll 78 (181)
T PF14009_consen 1 MGNCVSCCLA--SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSFRFGRRIKPLPPDEELQPGQIYFLL 78 (181)
T ss_pred CCCccccccc--ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccccCCCcccCCCccCeecCCCEEEEE
Confidence 9999998764 12467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHhHhhhh
Q 040603 81 PMKRATSKITATDMATLFVLANKAVKR 107 (172)
Q Consensus 81 P~~~~~~~ls~~~~a~L~~~a~~~~~~ 107 (172)
|+++++..++..++++++.+++.+...
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (181)
T PF14009_consen 79 PMSRLQSVLSASDMASLASSASSASSS 105 (181)
T ss_pred EccccCcccccchhcccccchhhcccc
Confidence 999999999999999999988777664
No 2
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=78.02 E-value=3.7 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEccCCcEEEecCCccHHHHHhh
Q 040603 20 AKVIFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 20 ~kVv~~dG~v~~~~~pv~aaevm~e 44 (172)
++|..+||++.+|....|+.|+-..
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~ 25 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYS 25 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHH
Confidence 5788999999999999999999854
No 3
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=77.28 E-value=3.2 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCCCCCHHHHHHHH
Q 040603 73 PKNVYVMFPMKRATSKITATDMATLF 98 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~ls~~~~a~L~ 98 (172)
+...|++||+..-. .||.+++++++
T Consensus 51 ~~~~~lVlP~~P~~-~lse~~L~~va 75 (77)
T TIGR03793 51 PTVLYLVLPVNPDI-ELTDEQLDAVA 75 (77)
T ss_pred CCeEEEEecCCCCC-CCCHHHHHHhh
Confidence 67899999999887 89999999876
No 4
>PF15386 Tantalus: Drosophila Tantalus-like
Probab=60.21 E-value=5.4 Score=26.86 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCCcC-cccccccccccc
Q 040603 153 VSRSKKP-LLETIEEETTYA 171 (172)
Q Consensus 153 ~~r~WkP-~LeTI~E~~~~r 171 (172)
+.+.-.+ .||||-|++..+
T Consensus 29 n~k~~~~~~LETIfEEp~~~ 48 (61)
T PF15386_consen 29 NYKKPTPKNLETIFEEPKNE 48 (61)
T ss_pred ccCCCCcCCcchhhcccccc
Confidence 4456666 899999998764
No 5
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=50.20 E-value=19 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.403 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLA 101 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a 101 (172)
+...||+||+...... +|.+++++|..+-
T Consensus 145 ae~rYlVLP~RP~gte~lsEeqLa~lVtrd 174 (185)
T TIGR01323 145 AESRYLVLPQRPAGTEHMSEEQLQQLVTRD 174 (185)
T ss_pred CCeEEEEEecCCCCCCCCCHHHHHHhhccc
Confidence 6789999999987654 9999999998654
No 6
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=49.48 E-value=63 Score=21.18 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.4
Q ss_pred EccCCcEEEecCCccHHHHHhh
Q 040603 23 IFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e 44 (172)
|.-||+..++..++|+++|+.+
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~ 24 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQ 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHH
Confidence 5669999999999999999963
No 7
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=49.38 E-value=58 Score=27.95 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=54.3
Q ss_pred CcceEEEccCCcEEEecCCccHHHHHhhC--CCcEEEccCCcccCCcccCCCCCCCCC-CCCeEEEEecCCCC---CC-C
Q 040603 17 TRSAKVIFPGGEIRQIQTPIKAAELMLEK--PNFFLINSRSLKIGQRFSPLNADEDLE-PKNVYVMFPMKRAT---SK-I 89 (172)
Q Consensus 17 ~~~~kVv~~dG~v~~~~~pv~aaevm~e~--P~h~Vc~s~~l~~g~~~~~L~~de~L~-~G~~YfllP~~~~~---~~-l 89 (172)
+..+-||-||+. ...|..|.|++.+. |--+|.|.-..+ ..++|+ .|.=|++++.+..- +. |
T Consensus 61 pDf~i~isPN~a---~PGP~~ARE~l~~~~iP~IvI~D~p~~K---------~~d~l~~~g~GYIivk~DpMIGArREFL 128 (277)
T PRK00994 61 PDFVIVISPNPA---APGPKKAREILKAAGIPCIVIGDAPGKK---------VKDAMEEQGLGYIIVKADPMIGARREFL 128 (277)
T ss_pred CCEEEEECCCCC---CCCchHHHHHHHhcCCCEEEEcCCCccc---------hHHHHHhcCCcEEEEecCccccchhhcc
Confidence 345666677764 46789999999866 776775553322 234454 78889999998753 23 9
Q ss_pred CHHHHHHHHHHHhHhhh
Q 040603 90 TATDMATLFVLANKAVK 106 (172)
Q Consensus 90 s~~~~a~L~~~a~~~~~ 106 (172)
.+.||+.+....-+.+.
T Consensus 129 DP~EMa~fNaD~~kVLa 145 (277)
T PRK00994 129 DPVEMALFNADVLKVLA 145 (277)
T ss_pred CHHHHHHhhhhHHHHHH
Confidence 99999999876655554
No 8
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=48.62 E-value=14 Score=29.28 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCCCCCCCeEEEEecCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~ 85 (172)
.+++|+.|.-||++|..+.
T Consensus 6 ~G~~l~~g~~YyI~p~~~g 24 (172)
T cd00178 6 DGNPLRNGGRYYILPAIRG 24 (172)
T ss_pred CCCCCcCCCeEEEEEceeC
Confidence 4789999999999999874
No 9
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=48.59 E-value=25 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEccCCcEEEecCCccHHHHHhh
Q 040603 22 VIFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 22 Vv~~dG~v~~~~~pv~aaevm~e 44 (172)
|..+||...++..+++++++...
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~ 25 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYA 25 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHH
Confidence 56789999999999999998853
No 10
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=45.47 E-value=19 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.3
Q ss_pred CCCCCCCCCeEEEEecCCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~~ 86 (172)
.+++|++|.-||++|..+..
T Consensus 6 ~G~~l~~g~~YyI~p~~~~~ 25 (176)
T PF00197_consen 6 DGNPLRNGGEYYILPAIRGA 25 (176)
T ss_dssp TSCB-BTTSEEEEEESSTGC
T ss_pred CCCCCcCCCCEEEEeCccCC
Confidence 47889999999999987765
No 11
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.39 E-value=21 Score=23.18 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EccCCcEEEecCCccHHHHHhh
Q 040603 23 IFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e 44 (172)
|..||+..++..+.|+++++..
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~ 24 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAR 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHh
Confidence 5679999999999999999964
No 12
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=44.83 E-value=82 Score=20.18 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred EccCCcEEEecCCccHHHHHhhC---CCcEEEccCCcccCCccc-CCCCCCCCCCCCeEEEEe
Q 040603 23 IFPGGEIRQIQTPIKAAELMLEK---PNFFLINSRSLKIGQRFS-PLNADEDLEPKNVYVMFP 81 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e~---P~h~Vc~s~~l~~g~~~~-~L~~de~L~~G~~YfllP 81 (172)
|..||+..++....|++|++... |+..| . ..|.-++ .-..+..|+.|-..-++|
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v-~----vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 3 IQLNQQTLSLPDGATVADALAAYGARPPFAV-A----VNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCEEEECCCCCcHHHHHHhhCCCCCeEE-E----ECCEEcCchhcccccCCCCCEEEEEe
Confidence 56699999999999999999643 33322 1 1122222 134466677775555555
No 13
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=44.00 E-value=69 Score=20.75 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=32.7
Q ss_pred EccCCcEEEecCCccHHHHHhhC---CCcEEEccCCcccCCcccC-CCCCCCCCCCCeEEEEe
Q 040603 23 IFPGGEIRQIQTPIKAAELMLEK---PNFFLINSRSLKIGQRFSP-LNADEDLEPKNVYVMFP 81 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e~---P~h~Vc~s~~l~~g~~~~~-L~~de~L~~G~~YfllP 81 (172)
|.-||+..++..++|++||+.+. |..++..-+. .-++. -..+..|+.|-..-++|
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~----~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESLGLDPRRVAVAVNG----EIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECC----EEcCHHHcCceecCCCCEEEEEE
Confidence 34689999999999999999754 4444322221 11111 13345676665555555
No 14
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=38.81 E-value=56 Score=21.21 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.6
Q ss_pred EccCCcEEEecCCccHHHHHhhC
Q 040603 23 IFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e~ 45 (172)
|.-||+..++..+.|+.+|+.+.
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l 24 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEEL 24 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHc
Confidence 45689999999999999999644
No 15
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=37.35 E-value=27 Score=27.80 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.6
Q ss_pred CCCCCCCCCeEEEEecCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~ 85 (172)
.+++|+.|.-||++|..+.
T Consensus 5 ~G~~l~~G~~YyI~p~~~g 23 (172)
T smart00452 5 DGNPLRNGGTYYILPAIRG 23 (172)
T ss_pred CCCCCcCCCcEEEEEcccc
Confidence 4789999999999999764
No 16
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=36.79 E-value=20 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEccCCcEEEecCCccHHHHHhhCCCcEE
Q 040603 22 VIFPGGEIRQIQTPIKAAELMLEKPNFFL 50 (172)
Q Consensus 22 Vv~~dG~v~~~~~pv~aaevm~e~P~h~V 50 (172)
+|++||+.++|...+. +|.+.-|.-.|
T Consensus 5 ii~~dG~~~q~~~~~a--~ivl~GpSG~v 31 (40)
T PF08140_consen 5 IITPDGTNVQFPHGVA--NIVLIGPSGAV 31 (40)
T ss_pred eECCCCCEEECCcccc--eEEEECCceEE
Confidence 7899999999998874 66666665443
No 17
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.84 E-value=53 Score=27.80 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=44.5
Q ss_pred CCccHHHHHh--hCCCcEEEccCCcccCCcccCCCCCCCC-CCCCeEEEEecCCCC---CC-CCHHHHHHHHHHHhHhhh
Q 040603 34 TPIKAAELML--EKPNFFLINSRSLKIGQRFSPLNADEDL-EPKNVYVMFPMKRAT---SK-ITATDMATLFVLANKAVK 106 (172)
Q Consensus 34 ~pv~aaevm~--e~P~h~Vc~s~~l~~g~~~~~L~~de~L-~~G~~YfllP~~~~~---~~-ls~~~~a~L~~~a~~~~~ 106 (172)
.|.+|.|++. +.|--+|.++-.+ ..-++| +-|-=|.+++.+..- +. |.+.|||.+...+-..+.
T Consensus 75 GP~kARE~l~~s~~PaiiigDaPg~---------~vkdeleeqGlGYIivk~DpmiGArREFLDPvEMA~fNaDv~kVLa 145 (277)
T COG1927 75 GPKKAREILSDSDVPAIIIGDAPGL---------KVKDELEEQGLGYIIVKADPMIGARREFLDPVEMASFNADVMKVLA 145 (277)
T ss_pred CchHHHHHHhhcCCCEEEecCCccc---------hhHHHHHhcCCeEEEecCCcccchhhhhcCHHHHHhhhhHHHHHHH
Confidence 5778888887 6677666555433 333444 588899999988653 23 999999999876555444
No 18
>PRK07440 hypothetical protein; Provisional
Probab=34.00 E-value=42 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEccCCcEEEecCCccHHHHHhh
Q 040603 22 VIFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 22 Vv~~dG~v~~~~~pv~aaevm~e 44 (172)
-|.-||+..++..++|+.+|+.+
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~ 28 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQ 28 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHH
Confidence 35569999999999999999964
No 19
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=30.18 E-value=70 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=20.2
Q ss_pred EEccCCcEEEecCCccHHHHHhh
Q 040603 22 VIFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 22 Vv~~dG~v~~~~~pv~aaevm~e 44 (172)
-|.-||+..+++.++++++|+.+
T Consensus 20 ~I~VNG~~~~~~~~~tl~~LL~~ 42 (84)
T PRK06083 20 TISINDQSIQVDISSSLAQIIAQ 42 (84)
T ss_pred EEEECCeEEEcCCCCcHHHHHHH
Confidence 36779999999999999999964
No 20
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.15 E-value=23 Score=32.49 Aligned_cols=11 Identities=55% Similarity=0.875 Sum_probs=9.0
Q ss_pred CCCcccCCcCC
Q 040603 1 MGNHISCTLSK 11 (172)
Q Consensus 1 MGN~~Sc~~~~ 11 (172)
||||.||+-.+
T Consensus 1 MG~c~sc~~~S 11 (550)
T KOG4224|consen 1 MGNCLSCCESS 11 (550)
T ss_pred CCccccccccc
Confidence 99999997553
No 21
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=29.69 E-value=55 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.4
Q ss_pred EccCCcEEEecCCccHHHHHhh
Q 040603 23 IFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e 44 (172)
|.-||+..++..+.|+.|++.+
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~ 24 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDS 24 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHH
Confidence 4569999999999999999964
No 22
>PRK06437 hypothetical protein; Provisional
Probab=29.61 E-value=1.7e+02 Score=19.33 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=30.7
Q ss_pred ccCC---cEEEecCCccHHHHHhhC---CCcEEEccCCcccCCcccCCCCCCCCCCCCeEEEEe
Q 040603 24 FPGG---EIRQIQTPIKAAELMLEK---PNFFLINSRSLKIGQRFSPLNADEDLEPKNVYVMFP 81 (172)
Q Consensus 24 ~~dG---~v~~~~~pv~aaevm~e~---P~h~Vc~s~~l~~g~~~~~L~~de~L~~G~~YfllP 81 (172)
.-+| +..++..+.|++||+.+. |..++.- ..|. .++.|..|..|--.-++|
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~----vNg~---iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVI----VNGS---PVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEE----ECCE---ECCCceEcCCCCEEEEEe
Confidence 3457 557778889999999643 3333322 1122 233788888876555555
No 23
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=27.50 E-value=1e+02 Score=18.29 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEccCCcEEEecCCccHHHHHhhC
Q 040603 21 KVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 21 kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
++..++|...++..+++..++..+.
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSI 26 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHH
Confidence 5677899999999999999988654
No 24
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=26.77 E-value=47 Score=19.92 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=18.5
Q ss_pred EEEccCCcEEEec--CCccHHHHHh
Q 040603 21 KVIFPGGEIRQIQ--TPIKAAELML 43 (172)
Q Consensus 21 kVv~~dG~v~~~~--~pv~aaevm~ 43 (172)
--|+-+|+|.-|. .|-+|.+||.
T Consensus 8 LTIfY~G~V~Vfd~v~~~Ka~~im~ 32 (36)
T PF06200_consen 8 LTIFYGGQVCVFDDVPPDKAQEIML 32 (36)
T ss_pred EEEEECCEEEEeCCCCHHHHHHHHH
Confidence 3467799999998 3678999995
No 25
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=26.76 E-value=33 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=38.9
Q ss_pred CCcceEEEccCCcEEEecCCccHHHHHhh----CCCcEEEccCC-cccCCccc--CCC-CCCCCCCCCeEEEE
Q 040603 16 HTRSAKVIFPGGEIRQIQTPIKAAELMLE----KPNFFLINSRS-LKIGQRFS--PLN-ADEDLEPKNVYVMF 80 (172)
Q Consensus 16 ~~~~~kVv~~dG~v~~~~~pv~aaevm~e----~P~h~Vc~s~~-l~~g~~~~--~L~-~de~L~~G~~Yfll 80 (172)
.....+|+.+||.+.+....-.+.=++.+ .-|-++|+.+. ......+. .++ +++.|+||+-|.|=
T Consensus 264 ~s~V~~Ivt~dg~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~~~~~f~A~vvWm~~~pl~pGr~Y~lK 336 (431)
T COG2895 264 TSRVKRIVTFDGELAQASAGEAVTLVLADEIDISRGDLIVAADAPPAVADAFDADVVWMDEEPLLPGRSYDLK 336 (431)
T ss_pred eeeEEEEeccCCchhhccCCceEEEEEcceeecccCcEEEccCCCcchhhhcceeEEEecCCCCCCCceEEEE
Confidence 45677888888888887765433323322 13566666553 22222222 223 57889999999983
No 26
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.46 E-value=83 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred ceEEEccCCcEEEecCC--ccHHHHHhhC
Q 040603 19 SAKVIFPGGEIRQIQTP--IKAAELMLEK 45 (172)
Q Consensus 19 ~~kVv~~dG~v~~~~~p--v~aaevm~e~ 45 (172)
.+||-..||+-.-+.-| +||+||+..-
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L 32 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQL 32 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHH
Confidence 68999999998888876 6999999644
No 27
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=24.81 E-value=1.9e+02 Score=19.16 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCc----EEEecCCccHHHHHhhC--C-Cc-EEEccCCcccCCcccCCCCCCCCCCCCeEEEEec
Q 040603 26 GGE----IRQIQTPIKAAELMLEK--P-NF-FLINSRSLKIGQRFSPLNADEDLEPKNVYVMFPM 82 (172)
Q Consensus 26 dG~----v~~~~~pv~aaevm~e~--P-~h-~Vc~s~~l~~g~~~~~L~~de~L~~G~~YfllP~ 82 (172)
+|+ ..++....|++||+.+. + .. .|..- | ..+++|..|+.|--.-++|.
T Consensus 10 ng~~~~~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN-----g---~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 10 IGRGIEKEIEWRKGMKVADILRAVGFNTESAIAKVN-----G---KVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred eccccceEEEcCCCCcHHHHHHHcCCCCccEEEEEC-----C---EECCCCcCcCCCCEEEEEcc
Confidence 666 55667889999999643 2 22 22211 1 12356888888877777663
No 28
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=2.8e+02 Score=23.77 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=58.8
Q ss_pred EEccCCcEEEecCC-----ccHHHHHhhCCCcEEEccCCcccCCcccCCCCCCCCCCCCeEEEEecCCCCCCCCHHHHHH
Q 040603 22 VIFPGGEIRQIQTP-----IKAAELMLEKPNFFLINSRSLKIGQRFSPLNADEDLEPKNVYVMFPMKRATSKITATDMAT 96 (172)
Q Consensus 22 Vv~~dG~v~~~~~p-----v~aaevm~e~P~h~Vc~s~~l~~g~~~~~L~~de~L~~G~~YfllP~~~~~~~ls~~~~a~ 96 (172)
+--..|++..+=.| -|-+.++..+|+|=|...+-++-|..+.-|++||.-+.|- ++.+-.+.--+-++..+.-+
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi-fLafQ~P~ei~GV~~~~fLr 103 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI-FLAFQYPVEIPGVTNSDFLR 103 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC-EEeecCCccCCCeeHHHHHH
Confidence 33345666555544 5888999999999999999999999999999999999984 44444444444577777777
Q ss_pred HHHHH
Q 040603 97 LFVLA 101 (172)
Q Consensus 97 L~~~a 101 (172)
.+..+
T Consensus 104 ~a~n~ 108 (251)
T COG0396 104 AAMNA 108 (251)
T ss_pred HHHHh
Confidence 76665
No 29
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=23.73 E-value=1.3e+02 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEccCCcEEEecCCccHHHHHhhC
Q 040603 21 KVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 21 kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
.++..||...++....++.++..+.
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~ 26 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 4677889999999999999988644
No 30
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=23.23 E-value=33 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=19.5
Q ss_pred CCcceEEEccCCcEEEecCCccHH
Q 040603 16 HTRSAKVIFPGGEIRQIQTPIKAA 39 (172)
Q Consensus 16 ~~~~~kVv~~dG~v~~~~~pv~aa 39 (172)
....++|-++||...+..-+++|.
T Consensus 41 ~~~~V~VtypDgS~~~V~v~V~V~ 64 (65)
T PF08428_consen 41 KTGKVKVTYPDGSTDEVPVPVTVT 64 (65)
T ss_pred EEEEEEEEcCCCCEEEEEeEEEEe
Confidence 355789999999999998887653
No 31
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=21.97 E-value=63 Score=20.45 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.4
Q ss_pred EEccCCcEEEecC
Q 040603 22 VIFPGGEIRQIQT 34 (172)
Q Consensus 22 Vv~~dG~v~~~~~ 34 (172)
.|++||+|++=..
T Consensus 4 ~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 4 TIYPDGRVEEEVE 16 (48)
T ss_pred EECCCcEEEEEEE
Confidence 4688999887543
No 32
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=20.80 E-value=52 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=16.6
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLA 101 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a 101 (172)
+...|++||+..-... +|.++++.|..+-
T Consensus 151 a~~rylVLP~rP~gte~~see~La~lVtrd 180 (188)
T PF02979_consen 151 AEVRYLVLPMRPAGTEGWSEEQLAALVTRD 180 (188)
T ss_dssp SSEEEEEE----TT-TT--HHHHHCTS-HH
T ss_pred cceEEEEecCCCCCCCCCCHHHHHHHhccc
Confidence 4568999999987654 9999999887554
No 33
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=20.21 E-value=1e+02 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.4
Q ss_pred EccCCcEEEecCC-ccHHHHHhh
Q 040603 23 IFPGGEIRQIQTP-IKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~~p-v~aaevm~e 44 (172)
|.-||+..++..+ .|++|++.+
T Consensus 3 I~vNG~~~~~~~~~~tv~~lL~~ 25 (67)
T PRK07696 3 LKINGNQIEVPESVKTVAELLTH 25 (67)
T ss_pred EEECCEEEEcCCCcccHHHHHHH
Confidence 4569999999987 789999963
Done!