Query 040603
Match_columns 172
No_of_seqs 178 out of 376
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmm_A Guanosine-3',5'-BIS(dip 73.5 4 0.00014 26.0 3.8 26 20-45 3-28 (73)
2 1wwt_A Threonyl-tRNA synthetas 69.0 9 0.00031 25.4 4.9 29 17-45 9-38 (88)
3 3hvz_A Uncharacterized protein 56.8 11 0.00037 25.2 3.5 60 18-83 6-69 (78)
4 1r8o_A STI, kunitz trypsin inh 48.7 12 0.0004 26.1 2.7 20 67-86 6-26 (96)
5 1ryj_A Unknown; beta/alpha pro 43.4 47 0.0016 21.0 4.9 53 23-82 7-66 (70)
6 1tie_A Erythrina trypsin inhib 40.7 17 0.00057 27.9 2.6 19 67-85 6-24 (172)
7 3s8k_A Latex serine proteinase 39.3 15 0.00052 28.5 2.2 19 67-85 10-28 (184)
8 3tc2_A Kunitz-type proteinase 38.8 16 0.00055 28.3 2.3 19 67-85 12-30 (187)
9 1r8n_A STI, kunitz trypsin inh 38.4 19 0.00064 28.0 2.6 21 66-86 9-29 (185)
10 3a8g_A NitrIle hydratase subun 38.3 24 0.00081 28.2 3.2 30 73-102 165-195 (207)
11 2dre_A Water-soluble chlorophy 37.5 19 0.00065 27.8 2.5 21 66-86 10-30 (180)
12 1avw_B STI, trypsin inhibitor; 36.6 18 0.00061 27.8 2.2 20 67-86 7-26 (177)
13 1eyl_A RWCI-3, chymotrypsin in 35.8 19 0.00066 27.9 2.3 20 66-85 10-29 (186)
14 3qyh_A CO-type nitrIle hydrata 35.4 23 0.00078 28.6 2.7 30 73-102 182-212 (226)
15 2zzd_C Thiocyanate hydrolase s 34.8 19 0.00063 29.4 2.1 31 73-103 183-214 (243)
16 3bx1_D BASI, alpha-amylase/sub 34.6 19 0.00065 27.8 2.1 20 66-85 9-28 (181)
17 3hht_A NitrIle hydratase alpha 33.7 25 0.00086 28.2 2.7 29 73-101 171-200 (216)
18 2qn4_A RASI, alpha-amylase/sub 32.1 25 0.00085 27.6 2.4 23 64-86 27-50 (200)
19 2gzb_A Kunitz-type proteinase 30.9 26 0.00089 26.7 2.3 21 66-86 8-29 (166)
20 3iir_A Trypsin inhibitor; beta 30.3 19 0.00063 28.1 1.4 20 67-86 7-26 (190)
21 1tke_A Threonyl-tRNA synthetas 29.2 41 0.0014 26.1 3.3 26 20-45 2-27 (224)
22 3e8l_C Serine proteinase inhib 27.3 35 0.0012 26.5 2.5 19 68-86 21-39 (185)
23 4an6_A Trypsin inhibitor; kuni 27.0 40 0.0014 25.9 2.8 19 68-86 9-28 (185)
24 4fm4_A NitrIle hydratase alpha 25.7 34 0.0012 27.2 2.1 31 73-103 156-187 (209)
25 1wba_A Winged bean albumin 1; 25.7 28 0.00096 26.7 1.7 15 67-81 9-23 (175)
26 1shx_A Ephrin-A5; ephrin signa 25.5 43 0.0015 24.9 2.6 25 60-84 92-116 (138)
27 2wo3_B Ephrin-A2; transferase- 23.6 60 0.002 24.6 3.1 26 60-85 102-127 (157)
28 1f0z_A THis protein; ubiquitin 23.2 44 0.0015 20.8 2.0 22 23-44 3-24 (66)
29 1ugp_A NitrIle hydratase alpha 22.7 43 0.0015 26.5 2.2 29 73-101 163-192 (203)
30 3hei_B Ephrin-A1; EPH receptor 22.2 67 0.0023 23.6 3.1 26 60-85 92-117 (132)
31 1qf6_A THRRS, threonyl-tRNA sy 22.0 58 0.002 29.6 3.3 26 20-45 2-27 (642)
32 1tyg_B YJBS; alpha beta barrel 21.2 1.8E+02 0.0061 19.5 4.9 56 22-81 22-82 (87)
33 3d12_B Ephrin-B3; beta propell 21.1 72 0.0025 23.7 3.1 27 60-86 90-116 (141)
34 1m2d_A [2Fe-2S] ferredoxin; th 20.6 68 0.0023 22.0 2.7 27 19-45 63-89 (110)
35 2k5p_A THis protein, thiamine- 20.1 56 0.0019 21.4 2.1 22 23-44 3-26 (78)
No 1
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=73.53 E-value=4 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.1
Q ss_pred eEEEccCCcEEEecCCccHHHHHhhC
Q 040603 20 AKVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 20 ~kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
++|..+||+..+|...+|+.|+..+.
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 67888999999999999999998654
No 2
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=69.05 E-value=9 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=25.3
Q ss_pred CcceEEEccCCcEEEecC-CccHHHHHhhC
Q 040603 17 TRSAKVIFPGGEIRQIQT-PIKAAELMLEK 45 (172)
Q Consensus 17 ~~~~kVv~~dG~v~~~~~-pv~aaevm~e~ 45 (172)
...++|..+||.+.+|.. ++|+.|+..+.
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i 38 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGI 38 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHh
Confidence 456889999999999997 99999999765
No 3
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=56.83 E-value=11 Score=25.20 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=38.0
Q ss_pred cceEEEccCCcEEEecCCccHHHHHhh-CC---CcEEEccCCcccCCcccCCCCCCCCCCCCeEEEEecC
Q 040603 18 RSAKVIFPGGEIRQIQTPIKAAELMLE-KP---NFFLINSRSLKIGQRFSPLNADEDLEPKNVYVMFPMK 83 (172)
Q Consensus 18 ~~~kVv~~dG~v~~~~~pv~aaevm~e-~P---~h~Vc~s~~l~~g~~~~~L~~de~L~~G~~YfllP~~ 83 (172)
..+.|..|||.+.+|....|+.|+-.. ++ ..++.- ++..+. ++.+..|+-|..-=++..+
T Consensus 6 ~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~A----kVNG~~--v~L~~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGA----KVDGRI--VPIDYKVKTGEIIDVLTTK 69 (78)
T ss_dssp CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEE----EETTEE--ECTTCBCCTTCBEEEEECC
T ss_pred ceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEE----EECCEE--cCCCcccCCCCEEEEEccC
Confidence 478999999999999999999998743 33 123321 111222 3336677777655554443
No 4
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=48.70 E-value=12 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=17.0
Q ss_pred CCCCC-CCCCeEEEEecCCCC
Q 040603 67 ADEDL-EPKNVYVMFPMKRAT 86 (172)
Q Consensus 67 ~de~L-~~G~~YfllP~~~~~ 86 (172)
.+++| ++|.-||++|..+..
T Consensus 6 ~G~~l~~~G~~YyI~p~~~g~ 26 (96)
T 1r8o_A 6 DGKPIENDGAEYYILPSVRGK 26 (96)
T ss_dssp TSCCCBSSSSCEEEEESSSSS
T ss_pred CCCEeeeCCCcEEEeeCccCC
Confidence 47899 999999999987653
No 5
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=43.42 E-value=47 Score=21.03 Aligned_cols=53 Identities=6% Similarity=0.064 Sum_probs=33.2
Q ss_pred EccCCcE----EEecCCccHHHHHhhC---CCcEEEccCCcccCCcccCCCCCCCCCCCCeEEEEec
Q 040603 23 IFPGGEI----RQIQTPIKAAELMLEK---PNFFLINSRSLKIGQRFSPLNADEDLEPKNVYVMFPM 82 (172)
Q Consensus 23 v~~dG~v----~~~~~pv~aaevm~e~---P~h~Vc~s~~l~~g~~~~~L~~de~L~~G~~YfllP~ 82 (172)
|.-||+. .++....|+++|+.+. +..+++--+. ..++.|+.|+.|-.--++|.
T Consensus 7 i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~-------~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 7 FTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNG-------QIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETT-------EECCTTSBCCTTCEEEEEEC
T ss_pred EEEeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECC-------EECCCcccCCCCCEEEEEec
Confidence 4456776 8888889999999764 3333322211 22445667888776666663
No 6
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin); 2.50A {Erythrina caffra} SCOP: b.42.4.1
Probab=40.70 E-value=17 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.6
Q ss_pred CCCCCCCCCeEEEEecCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~ 85 (172)
.+++|++|.-||++|..+.
T Consensus 6 ~G~~l~~G~~YyI~p~~~g 24 (172)
T 1tie_A 6 NGEVVQNGGTYYLLPQVWA 24 (172)
T ss_dssp TSCBCCTTCEEEEEESSGG
T ss_pred CCCCCcCCCCEEEeECccC
Confidence 4789999999999998765
No 7
>3s8k_A Latex serine proteinase inhibitor; kunitz-STI fold, protease inhibitor, hydrolase inhibitor; HET: NAG FUC; 1.70A {Carica papaya} PDB: 3s8j_A*
Probab=39.30 E-value=15 Score=28.48 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=16.7
Q ss_pred CCCCCCCCCeEEEEecCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~ 85 (172)
.+++|++|.-||++|..+.
T Consensus 10 ~G~~l~~g~~YyI~p~~~g 28 (184)
T 3s8k_A 10 DGKPVLYGVDYFVVSAIWG 28 (184)
T ss_dssp TSCBCBTTSCEEEEESSCG
T ss_pred CCCCCcCCCcEEEEEcccC
Confidence 4789999999999998874
No 8
>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease inhibitor, hydrolase inhibitor; 1.60A {Solanum tuberosum}
Probab=38.81 E-value=16 Score=28.32 Aligned_cols=19 Identities=16% Similarity=0.393 Sum_probs=16.8
Q ss_pred CCCCCCCCCeEEEEecCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~ 85 (172)
.+++|++|.-||++|..+.
T Consensus 12 ~G~~l~~g~~YyI~p~~~g 30 (187)
T 3tc2_A 12 TGKELDPRLSYRIISTFWG 30 (187)
T ss_dssp TSCBCCTTSCEEEECSCCG
T ss_pred CCCCCcCCCCEEEEEcccC
Confidence 4789999999999999874
No 9
>1r8n_A STI, kunitz trypsin inhibitor; kunitz-type trypsin/kallikrein inhibitor, beta-trefoil fold, flamboyant, hydrolase inhibitor; 1.75A {Delonix regia} SCOP: b.42.4.1
Probab=38.40 E-value=19 Score=27.97 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeEEEEecCCCC
Q 040603 66 NADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 66 ~~de~L~~G~~YfllP~~~~~ 86 (172)
-.+++|++|.-||++|..+..
T Consensus 9 ~~G~~l~~G~~YyI~p~~~g~ 29 (185)
T 1r8n_A 9 IEGYPVFLGSEYYIVSAIIGA 29 (185)
T ss_dssp TTSCBCBTTSEEEEEECTTSS
T ss_pred CCCCCCcCCCCEEEEECccCC
Confidence 368999999999999987653
No 10
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=38.35 E-value=24 Score=28.15 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHHh
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLAN 102 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a~ 102 (172)
+...|++||+...... +|.++++.|..+-+
T Consensus 165 ae~rYlVLP~rPagte~lseeqLa~lvtrd~ 195 (207)
T 3a8g_A 165 AETRYMVLPQRPAGTEGWSQEQLQEIVTKDC 195 (207)
T ss_dssp SSEEEEEECCCCTTCTTCCHHHHHHHCCHHH
T ss_pred CCeEEEEecCCCCCCCCCCHHHHHHHhcccc
Confidence 6789999999987765 99999999986643
No 11
>2dre_A Water-soluble chlorophyll protein; beta-trefoil, tetramer, plant, singlet oxygen, photooxidation, chlorophyll carrier; HET: CLA; 2.00A {Lepidium virginicum}
Probab=37.54 E-value=19 Score=27.83 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeEEEEecCCCC
Q 040603 66 NADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 66 ~~de~L~~G~~YfllP~~~~~ 86 (172)
..+++|++|.-||++|..+..
T Consensus 10 ~~G~~l~~G~~YyI~p~~~g~ 30 (180)
T 2dre_A 10 TNGNPLKIETRYFIQPASDNN 30 (180)
T ss_dssp TTSCBCBTTCCEEEEESSCSS
T ss_pred CCCCCCcCCCCEEEEeCccCC
Confidence 368999999999999987653
No 12
>1avw_B STI, trypsin inhibitor; complex (proteinase/inhibitor), porcine trypsin, soybean trypsin inhibitor, kunitz-type, beta-trefoil fold; 1.75A {Glycine max} SCOP: b.42.4.1 PDB: 1avx_B 1avu_A 1ba7_A
Probab=36.56 E-value=18 Score=27.84 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.1
Q ss_pred CCCCCCCCCeEEEEecCCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~~ 86 (172)
.+++|++|.-||++|..+..
T Consensus 7 ~G~~l~~G~~YyI~p~~~g~ 26 (177)
T 1avw_B 7 EGNPLENGGTYYILSDITAF 26 (177)
T ss_dssp TSCBCBTTEEEEEEESSTTC
T ss_pred CCCCCcCCCcEEEEeCccCC
Confidence 57899999999999987643
No 13
>1eyl_A RWCI-3, chymotrypsin inhibitor; beta trefoil, hydrolase inhibitor; HET: SO4; 1.90A {Psophocarpus tetragonolobus} SCOP: b.42.4.1 PDB: 1fn0_A* 2beb_A 2esu_A 1fmz_A* 2bea_A 2et2_A 4wbc_A* 1wbc_A 2wbc_A* 1xg6_A 2qyi_B 3i29_B 3i2x_A 3i2a_A 3qyd_A
Probab=35.82 E-value=19 Score=27.92 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.2
Q ss_pred CCCCCCCCCCeEEEEecCCC
Q 040603 66 NADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 66 ~~de~L~~G~~YfllP~~~~ 85 (172)
..+++|++|.-||++|..+.
T Consensus 10 ~~G~~l~~G~~YYI~p~~~g 29 (186)
T 1eyl_A 10 AEGNLVENGGTYYLLPHIWA 29 (186)
T ss_dssp TTSSBCBTTCEEEEEESSGG
T ss_pred CCCCCCcCCCCEEEeecccC
Confidence 36889999999999998764
No 14
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=35.36 E-value=23 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHHh
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLAN 102 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a~ 102 (172)
+...|++||+...... +|.+++++|..+-+
T Consensus 182 ae~rYlVLP~RP~gte~lseeqLa~lVTrds 212 (226)
T 3qyh_A 182 AELRYMVLPERPAGTEAYSEEQLAELVTRDS 212 (226)
T ss_dssp SSCEEEEECCCCSSCTTCCHHHHHTTCCHHH
T ss_pred CCeEEEEecCCCCCCCCCCHHHHHHHhcccc
Confidence 6789999999987655 99999999986643
No 15
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=34.80 E-value=19 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=25.7
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHHhH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLANK 103 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a~~ 103 (172)
+...|++||+...... +|.++|+.|+.+-+-
T Consensus 183 ae~rYlVLP~RPaGteglsEeqLa~lvTrdsm 214 (243)
T 2zzd_C 183 QKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCL 214 (243)
T ss_dssp SSEEEEEECCCCSSCTTCCHHHHHHTCCHHHH
T ss_pred CCeEEEEecCCCCCCCCCCHHHHHHHhcccce
Confidence 6688999999987665 999999999866543
No 16
>3bx1_D BASI, alpha-amylase/subtilisin inhibitor; complex (proteinase/inhibitor) enzyme inhibition, savinase, barley alpha-amylase/subtilisin inhibitor; 1.85A {Hordeum vulgare} SCOP: b.42.4.1 PDB: 1ava_C 2iwt_B*
Probab=34.65 E-value=19 Score=27.77 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCCCCCCCCCeEEEEecCCC
Q 040603 66 NADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 66 ~~de~L~~G~~YfllP~~~~ 85 (172)
..+++|++|.-||++|..+.
T Consensus 9 ~~G~~l~~G~~YyI~p~~~g 28 (181)
T 3bx1_D 9 TDGHELRADANYYVLSANRA 28 (181)
T ss_dssp TTSCBCBTTSCEEEEESSGG
T ss_pred CCCCCCcCCCCEEEEecccC
Confidence 36899999999999998664
No 17
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=33.71 E-value=25 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLA 101 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a 101 (172)
+...|++||+..-... +|.++|+.|..+-
T Consensus 171 ae~rylVLP~RP~gte~lseeqLa~lVTrd 200 (216)
T 3hht_A 171 SEIRFMVLPQRPEGTEGMTEEELAKLVTRD 200 (216)
T ss_dssp SSCEEEEECCCCTTCTTCCHHHHHTTCCTG
T ss_pred CceEEEEecCCCCCCCCCCHHHHHHhhccc
Confidence 6688999999988665 9999999987553
No 18
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=32.12 E-value=25 Score=27.61 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=18.9
Q ss_pred CC-CCCCCCCCCCeEEEEecCCCC
Q 040603 64 PL-NADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 64 ~L-~~de~L~~G~~YfllP~~~~~ 86 (172)
.| -.+++|++|.-||++|..+..
T Consensus 27 VlD~~G~~l~~G~~YyI~p~~~g~ 50 (200)
T 2qn4_A 27 VYDTEGHELSADGSYYVLPASPGH 50 (200)
T ss_dssp CBCTTSCBCBTTSCEEEEESSTTS
T ss_pred eEeCCCCCCcCCCcEEEEeCccCC
Confidence 34 468999999999999987654
No 19
>2gzb_A Kunitz-type proteinase inhibitor BBCI; cruzipain, cysteine proteinase inhibitor, hydrolase; 1.70A {Bauhinia bauhinioides} PDB: 2go2_A
Probab=30.91 E-value=26 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=17.6
Q ss_pred CCCCCCCC-CCeEEEEecCCCC
Q 040603 66 NADEDLEP-KNVYVMFPMKRAT 86 (172)
Q Consensus 66 ~~de~L~~-G~~YfllP~~~~~ 86 (172)
..+++|++ |.-||++|..+..
T Consensus 8 ~~G~~l~~~g~~YyI~p~~~g~ 29 (166)
T 2gzb_A 8 TKGEPVSNAADAYYLVPVSHGE 29 (166)
T ss_dssp TTSCBCBBSCSCEEEEESSSCC
T ss_pred CCCCEeecCCCCEEEEeCccCC
Confidence 35889999 9999999987654
No 20
>3iir_A Trypsin inhibitor; beta-trefoil fold, hydrolase inhib; 2.90A {Murraya koenigii} SCOP: b.42.4.0
Probab=30.26 E-value=19 Score=28.10 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=16.8
Q ss_pred CCCCCCCCCeEEEEecCCCC
Q 040603 67 ADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 67 ~de~L~~G~~YfllP~~~~~ 86 (172)
.+++|++|.-||++|..+..
T Consensus 7 ~G~~l~~g~~YyI~p~~~g~ 26 (190)
T 3iir_A 7 NGNVVEASRDYYLVSVIGGA 26 (190)
T ss_dssp TSCBCBTTSCBEEEEEEEET
T ss_pred CCCCCcCCCCEEEEECccCC
Confidence 47899999999999987643
No 21
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=29.17 E-value=41 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=22.5
Q ss_pred eEEEccCCcEEEecCCccHHHHHhhC
Q 040603 20 AKVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 20 ~kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
++|..+||.+.++...+|+.|+..+.
T Consensus 2 i~I~~p~G~~~~~~~g~T~~dia~~i 27 (224)
T 1tke_A 2 PVITLPDGSQRHYDHAVSPMDVALDI 27 (224)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHH
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHH
Confidence 57888999999999999999998543
No 22
>3e8l_C Serine proteinase inhibitor A; beta-trefoil fold, protease inhibitor, complex, DIG hydrolase, metal-binding, protease, secreted; 2.48A {Sagittaria sagittifolia}
Probab=27.34 E-value=35 Score=26.47 Aligned_cols=19 Identities=5% Similarity=-0.199 Sum_probs=16.8
Q ss_pred CCCCCCCCeEEEEecCCCC
Q 040603 68 DEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 68 de~L~~G~~YfllP~~~~~ 86 (172)
.++|+.|.-||++|..+..
T Consensus 21 ~~~~~nG~~YYIlPai~g~ 39 (185)
T 3e8l_C 21 LNLGGNYPLYTIQSAAIGF 39 (185)
T ss_dssp CCCSSSCCCEEEEECCTTC
T ss_pred ccccCCCCcEEEEEeecCC
Confidence 6789999999999998754
No 23
>4an6_A Trypsin inhibitor; kunitz type inhibitor, factor XA inhibitor, hydrolase inhibi; 1.94A {Tamarindus indica} PDB: 4an7_B
Probab=27.02 E-value=40 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCC-CCCCCeEEEEecCCCC
Q 040603 68 DED-LEPKNVYVMFPMKRAT 86 (172)
Q Consensus 68 de~-L~~G~~YfllP~~~~~ 86 (172)
+++ |+.|.-||++|..+..
T Consensus 9 G~pvl~~g~~YYIlP~~~g~ 28 (185)
T 4an6_A 9 GKPVLNNAGQYYILPAKQGK 28 (185)
T ss_dssp SCBCBSSSSEEEEEESSCCS
T ss_pred CCEeecCCCCEEEEECccCC
Confidence 355 7899999999987643
No 24
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=25.71 E-value=34 Score=27.25 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHHhH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLANK 103 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a~~ 103 (172)
+...|++||+...... +|.++++.|-.+-+-
T Consensus 156 ae~rYlVLP~rPagte~~see~La~lVtrdsm 187 (209)
T 4fm4_A 156 ADTRYMVLPLRPQGTEDWSEAQLATLITQDCL 187 (209)
T ss_dssp SSEEEEEECCCCTTCTTCCHHHHHTTCCHHHH
T ss_pred CCeEEEEeCCCCCCcCCCCHHHHHHHhhhhhh
Confidence 5578999999987765 999999998765433
No 25
>1wba_A Winged bean albumin 1; SEED storage protein; 1.80A {Psophocarpus tetragonolobus} SCOP: b.42.4.1
Probab=25.69 E-value=28 Score=26.73 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=14.1
Q ss_pred CCCCCCCCCeEEEEe
Q 040603 67 ADEDLEPKNVYVMFP 81 (172)
Q Consensus 67 ~de~L~~G~~YfllP 81 (172)
.+++|++|.-||++|
T Consensus 9 ~G~~l~~g~~YyI~p 23 (175)
T 1wba_A 9 EGNKLVNRGKYTIVS 23 (175)
T ss_dssp TSCBCBTTEEEEEEE
T ss_pred CCCCCcCCCcEEEee
Confidence 588999999999999
No 26
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=25.50 E-value=43 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.8
Q ss_pred CcccCCCCCCCCCCCCeEEEEecCC
Q 040603 60 QRFSPLNADEDLEPKNVYVMFPMKR 84 (172)
Q Consensus 60 ~~~~~L~~de~L~~G~~YfllP~~~ 84 (172)
+++.|.+-+-|-++|+-||.+-.+.
T Consensus 92 q~fsP~p~G~EF~pG~~YY~ISts~ 116 (138)
T 1shx_A 92 QLFTPFSLGFEFRPGREYFYISSAI 116 (138)
T ss_dssp CSCCSSTTCCCCCTTEEEEEEEEES
T ss_pred EEcCCCCCceeecCCCeEEEEEcCC
Confidence 5789999999999999999996553
No 27
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=23.55 E-value=60 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.9
Q ss_pred CcccCCCCCCCCCCCCeEEEEecCCC
Q 040603 60 QRFSPLNADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 60 ~~~~~L~~de~L~~G~~YfllP~~~~ 85 (172)
+++.|.+-+-|-++|+-||.+-.+..
T Consensus 102 Q~fSP~p~G~EF~pG~~YY~ISTS~g 127 (157)
T 2wo3_B 102 QLFTPFSLGFEFRPGHEYYYISATPP 127 (157)
T ss_dssp CSSCSSTTSCCCCTTCEEEEEEECTT
T ss_pred EECCCCCCCeeeeCCCeEEEEEecCC
Confidence 57899999999999999999976655
No 28
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=23.15 E-value=44 Score=20.79 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.0
Q ss_pred EccCCcEEEecCCccHHHHHhh
Q 040603 23 IFPGGEIRQIQTPIKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~~pv~aaevm~e 44 (172)
|.-||+..++....|+++|+.+
T Consensus 3 i~vNg~~~~~~~~~tv~~ll~~ 24 (66)
T 1f0z_A 3 ILFNDQAMQCAAGQTVHELLEQ 24 (66)
T ss_dssp EEESSCEECCCTTCCHHHHHHH
T ss_pred EEECCEEEEcCCCCcHHHHHHH
Confidence 4569999999999999999954
No 29
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=22.66 E-value=43 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCCCC-CCHHHHHHHHHHH
Q 040603 73 PKNVYVMFPMKRATSK-ITATDMATLFVLA 101 (172)
Q Consensus 73 ~G~~YfllP~~~~~~~-ls~~~~a~L~~~a 101 (172)
+...|++||+...... +|.++++.|..+-
T Consensus 163 ae~rylVlP~RPagteg~seeqLa~lvTrD 192 (203)
T 1ugp_A 163 SEMRFVVLPQRPAGTDGWSEEELATLVTRE 192 (203)
T ss_dssp SSEEEEEECCCCSSCTTCCHHHHHTTCCHH
T ss_pred CCeEEEEecCCCCCCCCCCHHHHHHHhccc
Confidence 4568999999987765 9999999987654
No 30
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=22.21 E-value=67 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.4
Q ss_pred CcccCCCCCCCCCCCCeEEEEecCCC
Q 040603 60 QRFSPLNADEDLEPKNVYVMFPMKRA 85 (172)
Q Consensus 60 ~~~~~L~~de~L~~G~~YfllP~~~~ 85 (172)
+++.|.+-+-|-++|+-||.+-.+.-
T Consensus 92 Q~FSP~p~G~EF~pG~~YY~ISt~~~ 117 (132)
T 3hei_B 92 QRFTPFTLGKEFKEGHSYYYISKPIH 117 (132)
T ss_dssp CSCCSCTTSCCCCTTCEEEEEEEESS
T ss_pred EEcCCCCCCeeecCCCcEEEEEccCC
Confidence 57899999999999999999866543
No 31
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=22.00 E-value=58 Score=29.60 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=23.0
Q ss_pred eEEEccCCcEEEecCCccHHHHHhhC
Q 040603 20 AKVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 20 ~kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
++|.++||.+++|..++|+.||....
T Consensus 2 ~~~~~~d~~~~~~~~~~t~~~~a~~i 27 (642)
T 1qf6_A 2 PVITLPDGSQRHYDHAVSPMDVALDI 27 (642)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHH
T ss_pred ceEEcCCCCeEEecCCCCHHHHHHHh
Confidence 57889999999999999999998653
No 32
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.23 E-value=1.8e+02 Score=19.47 Aligned_cols=56 Identities=7% Similarity=0.103 Sum_probs=33.0
Q ss_pred EEccCCcEEEecCC-ccHHHHHhhC---CCcEEEccCCcccCCcccC-CCCCCCCCCCCeEEEEe
Q 040603 22 VIFPGGEIRQIQTP-IKAAELMLEK---PNFFLINSRSLKIGQRFSP-LNADEDLEPKNVYVMFP 81 (172)
Q Consensus 22 Vv~~dG~v~~~~~p-v~aaevm~e~---P~h~Vc~s~~l~~g~~~~~-L~~de~L~~G~~YfllP 81 (172)
-|..||+..++... .|+++|+.+. +..+++.-+ |.-++. -.++..|+.|-.--++|
T Consensus 22 ~I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavN----g~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 22 MLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERN----KEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp CEEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEET----TEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEEC----CEECChhhcCCcCCCCCCEEEEEc
Confidence 36679999999987 9999999654 222221111 111111 23356677665555555
No 33
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=21.09 E-value=72 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred CcccCCCCCCCCCCCCeEEEEecCCCC
Q 040603 60 QRFSPLNADEDLEPKNVYVMFPMKRAT 86 (172)
Q Consensus 60 ~~~~~L~~de~L~~G~~YfllP~~~~~ 86 (172)
+++.|.+-+-|-++|+-||.+-.+...
T Consensus 90 q~fsP~p~G~EF~pG~~YY~ISts~G~ 116 (141)
T 3d12_B 90 QEYSPNLWGHEFRSHHDYYIIATSDGT 116 (141)
T ss_dssp SSCCSCCSCCCCCTTCEEEEEECSCSS
T ss_pred EEcCCCCCceeeeCCCeEEEEecCCCC
Confidence 578899999999999999998776543
No 34
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=20.63 E-value=68 Score=21.99 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=18.5
Q ss_pred ceEEEccCCcEEEecCCccHHHHHhhC
Q 040603 19 SAKVIFPGGEIRQIQTPIKAAELMLEK 45 (172)
Q Consensus 19 ~~kVv~~dG~v~~~~~pv~aaevm~e~ 45 (172)
.+-+|++||.+..--.|-.+.+|+.+|
T Consensus 63 P~v~V~P~~~~y~~vt~e~v~~il~~~ 89 (110)
T 1m2d_A 63 PVVVVYPDGVWYGQVKPEDVDEIVEKH 89 (110)
T ss_dssp SCEEEETTTEEECSCCGGGHHHHHHHT
T ss_pred CEEEEEeCCEEEecCCHHHHHHHHHHH
Confidence 455666998554444567788888875
No 35
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=20.07 E-value=56 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.6
Q ss_pred EccCCcEEEec--CCccHHHHHhh
Q 040603 23 IFPGGEIRQIQ--TPIKAAELMLE 44 (172)
Q Consensus 23 v~~dG~v~~~~--~pv~aaevm~e 44 (172)
|.-||+..++. .+.|+++|+.+
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~ 26 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSA 26 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHH
T ss_pred EEECCEEEEcCCCCCCcHHHHHHH
Confidence 45689999998 78999999954
Done!