Citrus Sinensis ID: 040605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL
Secondary Structure (PSIPRED)
cccccEEccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccHHHHHHHHccccccccEEEccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHcccccccccEEEEEccccccEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccccccccEccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHccccccEcHHHHHHHHccccHcHEEccccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcHHHHHcEccccccEEEEEEccccccHHHHHccccccccc
Coil and Loop (DISEMBL)
MQGLLFIDISyndlqglipnstafrnapleslkgnkglcgsvkglqtckaltphkqsfgtKWLIIVFHLLGALFTSIVLTAIFFIFQkrtldsgegqrspqnSQELLSILNFKGKFIYVEIIRAKndfdakycigngghgsvykaelpsgeflavkkfhsplpgdqiADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERgslatnlsNDAAAEEL
Flexible Loop (DISEMBL)
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL
Low Complexity Region (SEG)
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL
Disordered region (IsUnstruct)
***LLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKR****************LLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL*************
Disordered Region (DISOPRED)
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGS***********************IVFHLLGALFTSIVLTAIFFIF**********************ILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD*IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL*********
Disordered Region (DISEMBL)
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTL***********SQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL
Disordered Region (DISPRO)
*QGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVK***************GTKWLIIVFHLLGALFTSIVLTAIFFIFQKRT***************LLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPL****IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.986	0.213	0.484	1e-51
Q9LP24	1120	Probable leucine-rich rep	no	no	0.973	0.196	0.394	1e-39
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.915	0.188	0.347	6e-28
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.915	0.187	0.349	5e-25
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.969	0.183	0.302	4e-21
O49318	1124	Probable leucine-rich rep	no	no	0.946	0.190	0.336	5e-21
C0LGD7	953	Probable LRR receptor-lik	no	no	0.641	0.152	0.375	1e-20
Q9LJF3	1164	Receptor-like protein kin	no	no	0.880	0.170	0.341	1e-20
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.964	0.174	0.312	2e-20
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.889	0.196	0.313	5e-20

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 153/233 (65%), Gaps = 10/233 (4%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSV---KGLQTCKALTPHKQS 57
           M  L  +D+S+N+LQG IP++ AFRNAP ++ +GNK LCGSV   +GL+ C ++T  K+S
Sbjct: 645 MLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPC-SITSSKKS 703

Query: 58  FGTKWLII--VFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGK 115
              + LII  +  ++GA+    V   IF  F+KRT    E   S ++  E LSI +F GK
Sbjct: 704 HKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDS-ESGGETLSIFSFDGK 762

Query: 116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD--QIADQKEF 173
             Y EII+A  +FD KY IG GGHG VYKA+LP+   +AVKK +          + ++EF
Sbjct: 763 VRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEF 821

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           L EI ALT+IRHRN+VK +GFCSH R++FLVYEY+ERGSL   L ND  A++L
Sbjct: 822 LNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAKKL 874

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 142/233 (60%), Gaps = 13/233 (5%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSV--KGLQTCKALT-PHKQS 57
           M  L  +DIS N L+G +P++  FR A  ++L+ N GLC ++  + L+ C+ L  P K  
Sbjct: 724 MIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNG 783

Query: 58  FGTKWLIIVFHLLGALFT-SIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKF 116
               W+++   +LG L   SI      +  +KR L +G  + +   + E +SI +  GKF
Sbjct: 784 NLVVWILV--PILGVLVILSICANTFTYCIRKRKLQNG--RNTDPETGENMSIFSVDGKF 839

Query: 117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD---QKEF 173
            Y +II + N+FD  + IG GG+  VY+A L     +AVK+ H  +  ++I+    ++EF
Sbjct: 840 KYQDIIESTNEFDPTHLIGTGGYSKVYRANL-QDTIIAVKRLHDTI-DEEISKPVVKQEF 897

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           L E++ALT+IRHRN+VK +GFCSH RH+FL+YEY+E+GSL   L+ND  A+ L
Sbjct: 898 LNEVKALTEIRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKLLANDEEAKRL 950

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 23/230 (10%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           +  LL  +IS N+L G +P++  F+     +  GN GLC S +    C+ L PH  S   
Sbjct: 667 LMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQR--SHCQPLVPHSDS-KL 723

Query: 61  KWLI----------IVFHLLGALFTSIVLTAIFFIFQKR--TLDSGEGQRSPQNSQELLS 108
            WLI          I   ++G++F  I    + +  ++R     + E Q  P    +++ 
Sbjct: 724 NWLINGSQRQKILTITCIVIGSVFL-ITFLGLCWTIKRREPAFVALEDQTKP----DVMD 778

Query: 109 ILNFKGK-FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI 167
              F  K F Y  ++ A  +F     +G G  G+VYKAE+  GE +AVKK +S   G+  
Sbjct: 779 SYYFPKKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSR--GEGA 836

Query: 168 ADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           +    F AEI  L KIRHRNIVK YGFC H   + L+YEY+ +GSL   L
Sbjct: 837 SSDNSFRAEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQL 886

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 113/226 (50%), Gaps = 19/226 (8%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTP--HKQSF 58
           +  LL  + SYN L G IP     RN  + S  GN+GLCG    L  C    P    QS 
Sbjct: 673 LSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCG--PPLNQCIQTQPFAPSQST 727

Query: 59  G-------TKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILN 111
           G       +K + I   ++G +  S++L A+     +R + +           E+   + 
Sbjct: 728 GKPGGMRSSKIIAITAAVIGGV--SLMLIALIVYLMRRPVRTVASSAQDGQPSEMSLDIY 785

Query: 112 FKGK--FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F  K  F + +++ A ++FD  + +G G  G+VYKA LP+G  LAVKK  S   G    +
Sbjct: 786 FPPKEGFTFQDLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNNN 845

Query: 170 -QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
               F AEI  L  IRHRNIVK +GFC+H   + L+YEY+ +GSL 
Sbjct: 846 VDNSFRAEILTLGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLG 891

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 29/248 (11%)

Query: 1    MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
            +  L F++++ N+L+G +P+    ++     L GNK LCG V G       T  + ++G 
Sbjct: 771  LPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSAWGI 830

Query: 61   KWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQR-----------------SPQNS 103
              L++ F ++  +F   V +   +   KR     + +R                 S   S
Sbjct: 831  AGLMLGFTIIVFVF---VFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQNLYFLSGSRS 887

Query: 104  QELLSI--LNFKGKFIYV---EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKF 158
            +E LSI    F+   + V   +I+ A + F  K  IG+GG G+VYKA LP  + +AVKK 
Sbjct: 888  REPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKL 947

Query: 159  HSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
                   +    +EF+AE+E L K++H N+V   G+CS +    LVYEY+  GSL   L 
Sbjct: 948  SEA----KTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLR 1003

Query: 219  NDAAAEEL 226
            N     E+
Sbjct: 1004 NQTGMLEV 1011

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGS-VKGLQTCKALTPHKQSF- 58
           +  LL  + SYN+L G +P++  F+N  L S  GNKGLCG  ++      +  PH  S  
Sbjct: 685 LSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLK 744

Query: 59  ---GTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNS--QELLSILNFK 113
                +  II+         S++L AI   F +  ++        +    QE       K
Sbjct: 745 AGSARRGRIIIIVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFVPK 804

Query: 114 GKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFH---SPLPGDQIADQ 170
            +F   +I+ A   F   Y +G G  G+VYKA +PSG+ +AVKK          +     
Sbjct: 805 ERFTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTD 864

Query: 171 KEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYEYLERGSLA 214
             F AEI  L KIRHRNIV+ Y FC H  +  + L+YEY+ RGSL 
Sbjct: 865 NSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLG 910

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD7|Y1684_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 69  LLGALFTSIVLTAI--FFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKN 126
           +LG++  ++ LTAI    I +KR        R  ++S+  L I   K  F Y E+  A +
Sbjct: 565 VLGSVAAAVTLTAIIALIIMRKRMRGYSAVARRKRSSKASLKIEGVK-SFTYAELALATD 623

Query: 127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           +F++   IG GG+G VYK  L SG  +A+K+         +  +KEFL EIE L+++ HR
Sbjct: 624 NFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQE----GSLQGEKEFLTEIELLSRLHHR 679

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           N+V   GFC       LVYEY+E G+L  N+S
Sbjct: 680 NLVSLLGFCDEEGEQMLVYEYMENGTLRDNIS 711

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 109/240 (45%), Gaps = 41/240 (17%)

Query: 7   IDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCG------SVKGLQTCKALTPHKQSFGT 60
           +D+S N+L G IP        PL     N GLCG      S     T     P KQS  T
Sbjct: 716 LDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIAT 775

Query: 61  KWLI-IVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRS------PQNS---------Q 104
                IVF      F  IV+  I  +++ R +   E QR       P +           
Sbjct: 776 GMSAGIVFS-----FMCIVM-LIMALYRARKVQKKEKQREKYIESLPTSGSSSWKLSSVH 829

Query: 105 ELLSI--LNFKG---KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFH 159
           E LSI    F+    K  +  ++ A N F A   IG+GG G VYKA+L  G  +A+KK  
Sbjct: 830 EPLSINVATFEKPLRKLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKLI 889

Query: 160 SPLPGDQIADQ--KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
                 Q+  Q  +EF+AE+E + KI+HRN+V   G+C       LVYEY++ GSL T L
Sbjct: 890 ------QVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVL 943

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 22/240 (9%)

Query: 1    MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPH--KQSF 58
            M+ L ++++S+N+L G +     F   P +S  GN GLCGS   L  C  +  +  +Q  
Sbjct: 815  MKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSP--LSRCNRVRSNNKQQGL 870

Query: 59   GTKWLIIVFHL--LGALFTSIVLTAIFF-----IFQK----RTLDSGEGQRSPQNSQELL 107
              + ++I+  +  L A+   I++ A+FF      F+K     T  +     S    + L 
Sbjct: 871  SARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLF 930

Query: 108  SILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI 167
                 K    + +I+ A ++   ++ IG+GG G VYKAEL +GE +AVKK    L  D +
Sbjct: 931  RNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKI---LWKDDL 987

Query: 168  ADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH--SFLVYEYLERGSLATNLSNDAAAEE 225
               K F  E++ L +IRHR++VK  G+CS      + L+YEY++ GS+   L  D    E
Sbjct: 988  MSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLE 1047

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 16/217 (7%)

Query: 9   ISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLI--IV 66
           ++YN L G IP    F+  P  S +GN+GLCG           +PH  +  +K  I  IV
Sbjct: 612 VAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSPHGSAVKSKKNIRKIV 671

Query: 67  FHLLGALFTSIVLTAIFFIFQKRTLDSGE---GQRSPQNSQEL--LSILNFKGK-----F 116
              +G    ++ L  +  +   RT   GE    +++  +  EL   S++ F  K      
Sbjct: 672 AVAVGTGLGTVFLLTVTLLIILRTTSRGEVDPEKKADADEIELGSRSVVLFHNKDSNNEL 731

Query: 117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAE 176
              +I+++ + F+    IG GG G VYKA LP G  +A+K+    L GD     +EF AE
Sbjct: 732 SLDDILKSTSSFNQANIIGCGGFGLVYKATLPDGTKVAIKR----LSGDTGQMDREFQAE 787

Query: 177 IEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +E L++ +H N+V   G+C++     L+Y Y++ GSL
Sbjct: 788 VETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSL 824

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
225456159	1038	PREDICTED: probable LRR receptor-like se	0.933	0.203	0.557	2e-60
147772402	996	hypothetical protein VITISV_022117 [Viti	0.946	0.214	0.573	7e-59
225456161	1037	PREDICTED: probable LRR receptor-like se	0.933	0.203	0.545	8e-59
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.982	0.215	0.557	3e-58
359491509	1032	PREDICTED: probable LRR receptor-like se	0.982	0.215	0.557	5e-58
359491512	1078	PREDICTED: probable LRR receptor-like se	0.955	0.200	0.565	9e-57
297734328	2131	unnamed protein product [Vitis vinifera]	0.867	0.091	0.526	3e-54
147782364	501	hypothetical protein VITISV_038396 [Viti	0.938	0.423	0.517	3e-51
255545702	1008	receptor protein kinase, putative [Ricin	0.969	0.217	0.493	3e-51
7267528	1027	receptor protein kinase-like protein [Ar	0.986	0.217	0.484	7e-50

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/233 (55%), Positives = 156/233 (66%), Gaps = 22/233 (9%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCK-----ALTPHK 55
           M  L ++DISYN LQG IP+S AFRNA +E LKGNK LCG+VKGLQ CK        P K
Sbjct: 640 MPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVK 699

Query: 56  QSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQ-----ELLSIL 110
           +S    + II+F LLGAL        IF I ++R       +R+P+  +     +L SI 
Sbjct: 700 KSHKVVF-IIIFPLLGALVLLFAFIGIFLIAERR-------ERTPEIEEGDVQNDLFSIS 751

Query: 111 NFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIAD 169
           NF G+ +Y EII+A  DFD  YCIG GGHGSVYKAELPS   +AVKK H   P D ++A+
Sbjct: 752 NFDGRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSSNIVAVKKLH---PSDTEMAN 808

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           QK+FL EI ALT+I+HRNIVK  GFCSH RH FLVYEYLERGSLAT LS + A
Sbjct: 809 QKDFLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEYLERGSLATILSREEA 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 157/230 (68%), Gaps = 16/230 (6%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCK-----ALTPHK 55
           M GL  +DISYN LQG IPNS AFR+A +E+LKGNKGLCG+VK L+ CK        P K
Sbjct: 598 MLGLSDVDISYNQLQGPIPNSKAFRDATIEALKGNKGLCGNVKRLRPCKYGSGVDQQPVK 657

Query: 56  QSFGTKWLIIVFHLLGALFTSIVLTAIFFIF--QKRTLDSGEGQRSPQNSQELLSILNFK 113
           +S    + II+F LLGAL        IF I   ++RT +  EG+   QN  +L SI  F 
Sbjct: 658 KSHKVVF-IIIFPLLGALVLLFAFIGIFLIAARRERTPEIKEGEV--QN--DLFSISTFD 712

Query: 114 GKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIADQKE 172
           G+ +Y EII+A  DFD  YCIG GGHGSVYKAELPS   +AVKK H   P D ++A+QK+
Sbjct: 713 GRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSSNIVAVKKLH---PSDTEMANQKD 769

Query: 173 FLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           FL EI ALT+I+HRNIVK  GFCSH RH FLVYEYLERGSLAT LS + A
Sbjct: 770 FLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEYLERGSLATILSREEA 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/233 (54%), Positives = 156/233 (66%), Gaps = 22/233 (9%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCK-----ALTPHK 55
           M  L ++DISYN LQG IP+S AFRNA +E LKGNK LCG+VKGLQ CK        P K
Sbjct: 640 MPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVK 699

Query: 56  QSFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQ-----ELLSIL 110
           +S    + II+F LLGAL        IF I ++R       +R+P+  +      LLSI 
Sbjct: 700 KSHKVVF-IIIFPLLGALVLLSAFIGIFLIAERR-------ERTPEIEEGDVQNNLLSIS 751

Query: 111 NFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIAD 169
            F G+ +Y EII+A  DFD  YCIG GGHGSVYKAELPSG  +AVKK H   P D  +A+
Sbjct: 752 TFDGRAMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSGNIVAVKKLH---PSDMDMAN 808

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           QK+FL ++ A+T+I+HRNIV+  GFCS+ RHSFLVYEYLERGSLAT LS + A
Sbjct: 809 QKDFLNKVRAMTEIKHRNIVRLLGFCSYPRHSFLVYEYLERGSLATILSREEA 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 148/226 (65%), Gaps = 4/226 (1%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           M GL  +DISYNDLQG IPNS AF+N  +E L+GNKGLCGSVKGLQ C+  +  K +   
Sbjct: 637 MHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKA 696

Query: 61  KWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVE 120
            + II+F LLGAL        I  I Q R     E     Q ++ L SI  F G+  Y  
Sbjct: 697 VF-IIIFSLLGALLILSAFIGISLISQGRRNAKMEKAGDVQ-TENLFSISTFDGRTTYEA 754

Query: 121 IIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL 180
           II A  DFD  YCIG GGHGSVYKAELPSG  +AVKK H       +A QK+F+ EI AL
Sbjct: 755 IIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLHRF--DIDMAHQKDFMNEIRAL 812

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           T+I+HRNIVK  GFCSH+RHSFLVYEYLERGSL T LS +  A+E+
Sbjct: 813 TEIKHRNIVKLLGFCSHSRHSFLVYEYLERGSLGTILSKELQAKEV 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 148/226 (65%), Gaps = 4/226 (1%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           M GL  +DISYNDLQG IPNS AF+N  +E L+GNKGLCGSVKGLQ C+  +  K +   
Sbjct: 637 MHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKA 696

Query: 61  KWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVE 120
            + II+F LLGAL        I  I Q R     E     Q ++ L SI  F G+  Y  
Sbjct: 697 VF-IIIFSLLGALLILSAFIGISLISQGRRNAKMEKAGDVQ-TENLFSISTFDGRTTYEA 754

Query: 121 IIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL 180
           II A  DFD  YCIG GGHGSVYKAELPSG  +AVKK H       +A QK+F+ EI AL
Sbjct: 755 IIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLHRF--DIDMAHQKDFVNEIRAL 812

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           T+I+HRNIVK  GFCSH+RHSFLVYEYLERGSL T LS +  A+E+
Sbjct: 813 TEIKHRNIVKLLGFCSHSRHSFLVYEYLERGSLGTILSKELQAKEV 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/228 (56%), Positives = 151/228 (66%), Gaps = 12/228 (5%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           M+GL  IDISYN LQG IPNS AFR+A +E LKGNK LCG+VKGLQ CK  +   Q    
Sbjct: 647 MRGLSDIDISYNQLQGPIPNSKAFRDATIELLKGNKDLCGNVKGLQPCKNDSGAGQQPVK 706

Query: 61  KW----LIIVFHLLGALFTSIVLTAIFFIFQ--KRTLDSGEGQRSPQNSQELLSILNFKG 114
           K      IIVF LLGAL        IF I +  KRT +  EG    QN  +L SI  F G
Sbjct: 707 KGHKIVFIIVFPLLGALVLLFAFIGIFLIAERTKRTPEIEEGDV--QN--DLFSISTFDG 762

Query: 115 KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFL 174
           + +Y EII+A  DFD  YCIG GGHGSVYKAEL SG  +AVKK ++      +A+Q++F 
Sbjct: 763 RAMYEEIIKATKDFDPMYCIGKGGHGSVYKAELSSGNIVAVKKLYAS--DIDMANQRDFF 820

Query: 175 AEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
            E+ ALT+I+HRNIVK  GFCSH RHSFLVYEYLERGSLA  LS + A
Sbjct: 821 NEVRALTEIKHRNIVKLLGFCSHPRHSFLVYEYLERGSLAAMLSREEA 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734328|emb|CBI15575.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 147/228 (64%), Gaps = 32/228 (14%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           M  L ++DISYN LQG IP+S AFRNA +E LKGNK LCG+            HK  F  
Sbjct: 401 MPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNS-----------HKVVF-- 447

Query: 61  KWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQ-----ELLSILNFKGK 115
              II+F LLGAL        IF I ++R       +R+P+  +      LLSI  F G+
Sbjct: 448 ---IIIFPLLGALVLLSAFIGIFLIAERR-------ERTPEIEEGDVQNNLLSISTFDGR 497

Query: 116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIADQKEFL 174
            +Y EII+A  DFD  YCIG GGHGSVYKAELPSG  +AVKK H   P D  +A+QK+FL
Sbjct: 498 AMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSGNIVAVKKLH---PSDMDMANQKDFL 554

Query: 175 AEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
            ++ A+T+I+HRNIV+  GFCS+ RHSFLVYEYLERGSLAT LS + A
Sbjct: 555 NKVRAMTEIKHRNIVRLLGFCSYPRHSFLVYEYLERGSLATILSREEA 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782364|emb|CAN72719.1| hypothetical protein VITISV_038396 [Vitis vinifera]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/232 (51%), Positives = 150/232 (64%), Gaps = 20/232 (8%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALT----PHKQ 56
           ++GL  ++IS N LQG IPNS AFR+A +E LK N GLCG+VKGLQ CK  +    P  +
Sbjct: 260 IRGLSDVEISSNQLQGPIPNSKAFRDATIEVLKVNNGLCGNVKGLQPCKKGSGVGQPPVE 319

Query: 57  SFGTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQ-----ELLSILN 111
                  II+F LLGAL        IF   ++R       +R+P+  +     +L SI  
Sbjct: 320 KGHKIVFIIIFPLLGALLLLFAFIGIFLGAERR-------ERTPEIEEGDVQNDLSSIST 372

Query: 112 FKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIADQ 170
           F G+ +Y E I+A  DFD  YCIG GGHGS+YKAELPSG  +AVKK H   P D  +A+Q
Sbjct: 373 FDGRTMYEENIKATKDFDLMYCIGKGGHGSIYKAELPSGNIVAVKKLH---PSDIDMANQ 429

Query: 171 KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           ++FL E+ A T+I+HRNIVK  GFCSH RHSFLVYEYLERGSLAT LS +A 
Sbjct: 430 RDFLKEVRAPTEIKHRNIVKLLGFCSHPRHSFLVYEYLERGSLATILSREAV 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 158/235 (67%), Gaps = 16/235 (6%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQS--- 57
           M GL  IDISYN L+G +P++ AF+N+ +E+ +GNKGLCG V+GLQ CK  +  + S   
Sbjct: 611 MHGLSSIDISYNKLEGPVPDNKAFQNSSIEAFQGNKGLCGHVQGLQPCKPSSTEQGSSIK 670

Query: 58  FGTK-WLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKF 116
           F  + +L+I   L GA F  +    + F   KR+ ++ E ++S Q S+E+L I +F GK 
Sbjct: 671 FHKRLFLVISLPLFGA-FLILSFLGVLFFQSKRSKEALEAEKSSQESEEILLITSFDGKS 729

Query: 117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD-----QK 171
           ++ EII A + F+  YCIG GG GSVYKA+L SG  +AVKK H      Q  D     QK
Sbjct: 730 MHDEIIEATDSFNDIYCIGKGGCGSVYKAKLSSGSTVAVKKLH------QSHDAWKPYQK 783

Query: 172 EFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           EF +EI ALT+I+HRNIVKFYGFCS++ +SFLVYE +E+GSLAT L ++ AA+EL
Sbjct: 784 EFWSEIRALTEIKHRNIVKFYGFCSYSAYSFLVYECIEKGSLATILRDNEAAKEL 838

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267528|emb|CAB78010.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|7321074|emb|CAB82121.1| receptor protein kinase-like protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 153/233 (65%), Gaps = 10/233 (4%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSV---KGLQTCKALTPHKQS 57
           M  L  +D+S+N+LQG IP++ AFRNAP ++ +GNK LCGSV   +GL+ C ++T  K+S
Sbjct: 627 MLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPC-SITSSKKS 685

Query: 58  FGTKWLII--VFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGK 115
              + LII  +  ++GA+    V   IF  F+KRT    E   S ++  E LSI +F GK
Sbjct: 686 HKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDS-ESGGETLSIFSFDGK 744

Query: 116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD--QIADQKEF 173
             Y EII+A  +FD KY IG GGHG VYKA+LP+   +AVKK +          + ++EF
Sbjct: 745 VRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEF 803

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           L EI ALT+IRHRN+VK +GFCSH R++FLVYEY+ERGSL   L ND  A++L
Sbjct: 804 LNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAKKL 856

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.986	0.213	0.484	3.2e-50
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.973	0.196	0.394	2.2e-40
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.938	0.192	0.364	4.8e-28
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.933	0.187	0.356	1.6e-26
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.907	0.186	0.362	3.6e-25
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.911	0.164	0.325	9.8e-24
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.942	0.170	0.327	8.7e-23
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.539	0.094	0.407	1.5e-21
TAIR|locus:2154709	1036	PSKR2 "phytosylfokine-alpha re	0.889	0.194	0.306	4.2e-21
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.880	0.205	0.298	5.6e-21

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
 Identities = 113/233 (48%), Positives = 153/233 (65%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSV---KGLQTCKALTPHKQS 57
             M  L  +D+S+N+LQG IP++ AFRNAP ++ +GNK LCGSV   +GL+ C ++T  K+S
Sbjct:   645 MLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPC-SITSSKKS 703

Query:    58 FGTKWLII--VFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGK 115
                + LII  +  ++GA+    V   IF  F+KRT    E   S ++  E LSI +F GK
Sbjct:   704 HKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDS-ESGGETLSIFSFDGK 762

Query:   116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD--QIADQKEF 173
               Y EII+A  +FD KY IG GGHG VYKA+LP+   +AVKK +          + ++EF
Sbjct:   763 VRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEF 821

Query:   174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
             L EI ALT+IRHRN+VK +GFCSH R++FLVYEY+ERGSL   L ND  A++L
Sbjct:   822 LNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAKKL 874

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 92/233 (39%), Positives = 141/233 (60%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSV--KGLQTCKALT-PHKQS 57
             M  L  +DIS N L+G +P++  FR A  ++L+ N GLC ++  + L+ C+ L  P K  
Sbjct:   724 MIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNG 783

Query:    58 FGTKWLIIVFHLLGAL-FTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKF 116
                 W+++   +LG L   SI      +  +KR L +G     P+  + + SI +  GKF
Sbjct:   784 NLVVWILVP--ILGVLVILSICANTFTYCIRKRKLQNGRNT-DPETGENM-SIFSVDGKF 839

Query:   117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD---QKEF 173
              Y +II + N+FD  + IG GG+  VY+A L     +AVK+ H  +  ++I+    ++EF
Sbjct:   840 KYQDIIESTNEFDPTHLIGTGGYSKVYRANLQD-TIIAVKRLHDTID-EEISKPVVKQEF 897

Query:   174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
             L E++ALT+IRHRN+VK +GFCSH RH+FL+YEY+E+GSL   L+ND  A+ L
Sbjct:   898 LNEVKALTEIRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKLLANDEEAKRL 950

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
 Identities = 82/225 (36%), Positives = 113/225 (50%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
             +  LL  +IS N+L G +P++  F+     +  GN GLC S +    C+ L PH  S   
Sbjct:   667 LMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRS--HCQPLVPHSDS-KL 723

Query:    61 KWLIIVFHLLGAL-FTSIVLTAIFFI-FQKR--TLDSGEGQ---RSPQNSQELLSILNFK 113
              WLI        L  T IV+ ++F I F     T+   E        Q   +++    F 
Sbjct:   724 NWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFP 783

Query:   114 GK-FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKE 172
              K F Y  ++ A  +F     +G G  G+VYKAE+  GE +AVKK +S   G+  +    
Sbjct:   784 KKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSR--GEGASSDNS 841

Query:   173 FLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
             F AEI  L KIRHRNIVK YGFC H   + L+YEY+ +GSL   L
Sbjct:   842 FRAEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQL 886

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
 Identities = 81/227 (35%), Positives = 118/227 (51%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGS-VKGLQTCKALTPHKQSF- 58
             +  LL  + SYN+L G +P++  F+N  L S  GNKGLCG  ++      +  PH  S  
Sbjct:   685 LSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLK 744

Query:    59 -GT----KWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNF- 112
              G+    + +IIV  ++G +  S++L AI   F +  ++        +      S + F 
Sbjct:   745 AGSARRGRIIIIVSSVIGGI--SLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFV 802

Query:   113 -KGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQK 171
              K +F   +I+ A   F   Y +G G  G+VYKA +PSG+ +AVKK  S   G+      
Sbjct:   803 PKERFTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNN 862

Query:   172 ---EFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYEYLERGSL 213
                 F AEI  L KIRHRNIV+ Y FC H  +  + L+YEY+ RGSL
Sbjct:   863 TDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSL 909

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
 Identities = 82/226 (36%), Positives = 116/226 (51%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPH--KQSF 58
             +  LL  + SYN L G IP     RN  + S  GN+GLCG    L  C    P    QS 
Sbjct:   673 LSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPP--LNQCIQTQPFAPSQST 727

Query:    59 G-------TKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDS-GEGQRSPQNSQELLSIL 110
             G       +K + I   ++G +  S++L A+     +R + +     +  Q S+  L I 
Sbjct:   728 GKPGGMRSSKIIAITAAVIGGV--SLMLIALIVYLMRRPVRTVASSAQDGQPSEMSLDIY 785

Query:   111 NFKGK--FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIA 168
              F  K  F + +++ A ++FD  + +G G  G+VYKA LP+G  LAVKK  S   G    
Sbjct:   786 -FPPKEGFTFQDLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNN 844

Query:   169 D-QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             +    F AEI  L  IRHRNIVK +GFC+H   + L+YEY+ +GSL
Sbjct:   845 NVDNSFRAEILTLGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSL 890

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
 Identities = 73/224 (32%), Positives = 121/224 (54%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTC-KALTPHKQSFG 59
             M+ L ++++SYN+L+G +     F     ++  GN GLCGS   L  C +A + +++S  
Sbjct:   816 MKSLGYLNLSYNNLEGKLKKQ--FSRWQADAFVGNAGLCGSP--LSHCNRAGSKNQRSLS 871

Query:    60 TKWLIIVFHL--LGALFTSIVLTAIFF-----IFQK-RTLDSGEGQRSPQNSQELLSILN 111
              K ++I+  +  L A+   +++  +FF     +F+K R  +S     S  +   L S   
Sbjct:   872 PKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGG 931

Query:   112 FKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQK 171
              K    + +I+ A +  + ++ IG+GG G VYKAEL +GE +AVKK    L  D +   K
Sbjct:   932 AKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKI---LWKDDLMSNK 988

Query:   172 EFLAEIEALTKIRHRNIVKFYGFCSHARH--SFLVYEYLERGSL 213
              F  E++ L  IRHR++VK  G+CS      + L+YEY+  GS+
Sbjct:   989 SFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSV 1032

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
 Identities = 77/235 (32%), Positives = 122/235 (51%)

Query:     1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPH--KQSF 58
             M+ L ++++S+N+L G +     F   P +S  GN GLCGS   L  C  +  +  +Q  
Sbjct:   815 MKSLGYLNVSFNNLGGKLKKQ--FSRWPADSFLGNTGLCGSP--LSRCNRVRSNNKQQGL 870

Query:    59 GTKWLIIVFHL--LGALFTSIVLTAIFF-----IFQKRTLDSGEGQRSPQNSQELLSIL- 110
               + ++I+  +  L A+   I++ A+FF      F+K    S     S  +SQ     L 
Sbjct:   871 SARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLF 930

Query:   111 -N--FKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI 167
              N   K    + +I+ A ++   ++ IG+GG G VYKAEL +GE +AVKK    L  D +
Sbjct:   931 RNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKI---LWKDDL 987

Query:   168 ADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH--SFLVYEYLERGSLATNLSND 220
                K F  E++ L +IRHR++VK  G+CS      + L+YEY++ GS+   L  D
Sbjct:   988 MSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHED 1042

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 231 (86.4 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 53/130 (40%), Positives = 76/130 (58%)

Query:   101 QNSQELLSI--LNFKGKFIYV---EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAV 155
             + S+E LSI    F+   + V   +I++A  +F   + IG+GG G+VYKA LP G  +A+
Sbjct:   970 KKSREPLSINLATFEHALLRVTADDILKATENFSKVHIIGDGGFGTVYKAALPEGRRVAI 1029

Query:   156 KKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLAT 215
             K+ H    G Q    +EFLAE+E + K++H N+V   G+C      FL+YEY+E GSL  
Sbjct:  1030 KRLHG---GHQFQGDREFLAEMETIGKVKHPNLVPLLGYCVCGDERFLIYEYMENGSLEM 1086

Query:   216 NLSNDAAAEE 225
              L N A A E
Sbjct:  1087 WLRNRADALE 1096

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2154709 PSKR2 "phytosylfokine-alpha receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
 Identities = 69/225 (30%), Positives = 111/225 (49%)

Query:     9 ISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKG---LQTCKALTP----HKQSFGTK 61
             ++YN L G IP+   F + P  S +GN GLC ++     +     L P     + + G K
Sbjct:   615 VAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNPKGSSRRNNNGGK 674

Query:    62 W---LIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQN----SQEL--LSILNF 112
             +    I+V  +  A+  +++L+ I     ++ +D        +     S+ L    I+ F
Sbjct:   675 FGRSSIVVLTISLAIGITLLLSVILLRISRKDVDDRINDVDEETISGVSKALGPSKIVLF 734

Query:   113 KG---KFIYVE-IIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIA 168
                  K + VE ++++ N+F     IG GG G VYKA  P G   AVK+    L GD   
Sbjct:   735 HSCGCKDLSVEELLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKR----LSGDCGQ 790

Query:   169 DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
              ++EF AE+EAL++  H+N+V   G+C H     L+Y ++E GSL
Sbjct:   791 MEREFQAEVEALSRAEHKNLVSLQGYCKHGNDRLLIYSFMENGSL 835

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
 Identities = 62/208 (29%), Positives = 106/208 (50%)

Query:     7 IDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGTKWLIIV 66
             ++IS+N+L G+IP    F      S  GN  LCG+  G   C    P  Q F T+  +I 
Sbjct:   533 LNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCGNWVG-SICGPSLPKSQVF-TRVAVIC 590

Query:    67 FHLLGAL-FTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAK 125
               +LG +    ++  A++   Q++ +  G  ++ P+ S +L+ +        + +I+R  
Sbjct:   591 M-VLGFITLICMIFIAVYKSKQQKPVLKGSSKQ-PEGSTKLVILHMDMAIHTFDDIMRVT 648

Query:   126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
              + D KY IG G   +VYK    +   +A+K+ ++  P    ++ +EF  E+E +  IRH
Sbjct:   649 ENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYP----SNFREFETELETIGSIRH 704

Query:   186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
             RNIV  +G+      + L Y+Y+E GSL
Sbjct:   705 RNIVSLHGYALSPFGNLLFYDYMENGSL 732

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-17
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-15
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-14
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-14
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	7e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	7e-12
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-10
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-10
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-10
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-09
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	6e-09
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	9e-09
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-08
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-08
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-08
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	9e-08
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	9e-08
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	3e-07
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	4e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-06
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-06
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-06
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	6e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-06
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	6e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	7e-06
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	8e-06
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-05
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	2e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	4e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	5e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	6e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	7e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	7e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	8e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	9e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	9e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	9e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	2e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	4e-04
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	4e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	4e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	5e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	6e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	8e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.001
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	0.001
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.001
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.001
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.001
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.002
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	0.002
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.002
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.002
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	0.003
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	0.003
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	0.003
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	0.003
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.003
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.003
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	0.004
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G GG G+VY A    +G+ +A+K          +   +E L EIE L K+ H NIVK Y
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLL---EELLREIEILKKLNHPNIVKLY 57

Query: 193 GFCSHARHSFLVYEYLERGSLAT 215
           G      H +LV EY E GSL  
Sbjct: 58  GVFEDENHLYLVMEYCEGGSLKD 80

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G VYK +L          +AVK         QI   +EFL E   + K+ H N+
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQI---EEFLREARIMRKLDHPNV 63

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           VK  G C+     ++V EY+E G L
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDL 88

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G VYK  L          +AVK         QI   +EFL E   + K+ H NI
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQI---EEFLREARIMRKLDHPNI 63

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           VK  G C+      +V EY+  G L
Sbjct: 64  VKLLGVCTEEEPLMIVMEYMPGGDL 88

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 71.4 bits (176), Expect = 6e-15
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 134 IGNGGHGSVYKAEL---PSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G G  G VYK +L          AVK   +        ++K+FL E   + K+ H N+V
Sbjct: 3   LGEGAFGEVYKGKLKGKDGKTTEVAVK---TLKEDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           +  G C+     +LV EY+E G L
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDL 83

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 71.0 bits (175), Expect = 6e-15
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL-PSGEFL----AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G VYK  L   GE      AVK       G    +++EFL E   + K+ H NI
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLK---EGASEEEREEFLEEASIMKKLSHPNI 63

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           V+  G C+     ++V EY+  G L
Sbjct: 64  VRLLGVCTQGEPLYIVTEYMPGGDL 88

Length = 258

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 133 CIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
            IG G  G VYK   L +G+F+A+K+    L   +    K  + EI+ L  ++H NIVK+
Sbjct: 7   LIGRGAFGVVYKGLNLETGDFVAIKQIS--LEKIKEEALKSIMQEIDLLKNLKHPNIVKY 64

Query: 192 YGFCSHARHSFLVYEYLERGSLATNLSN 219
            G    +   +++ EY E GSL   +  
Sbjct: 65  IGSIETSDSLYIILEYAENGSLRQIIKK 92

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G  G VY A +  +G+ +A+K            D++  L EI+ L K++H NIV+ Y
Sbjct: 7   LGEGSFGKVYLARDKKTGKLVAIKVIK---KKKIKKDRERILREIKILKKLKHPNIVRLY 63

Query: 193 GFCSHARHSFLVYEYLERGSLATNLSN 219
                    +LV EY E G L   L  
Sbjct: 64  DVFEDEDKLYLVMEYCEGGDLFDLLKK 90

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.9 bits (171), Expect = 6e-14
 Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 32/229 (13%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCG--SVKGLQTCKALTPHKQSF 58
           ++ L+ ++IS+N L G +P++ AF      ++ GN  LCG  +  GL  CK +       
Sbjct: 570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS-- 627

Query: 59  GTKWLIIVFHLLGALFTSIVLTAIFFIFQKRTLDSGEGQRSPQNSQELLSILNFKGKF-- 116
              W   +   LGA F  + L A  F+F  R  ++ E +R  +N      +  F  K   
Sbjct: 628 ---WWFYITCTLGA-FLVLALVAFGFVFI-RGRNNLELKRV-ENEDGTWELQFFDSKVSK 681

Query: 117 -IYVE-IIRAKNDFDAKYCIGNGGHGSVYKAELPSG--EFLA--VKKFHSPLPGDQIADQ 170
            I +  I+ +  +   +  I  G  G+ YK +      +F+   +   +S +P  +IAD 
Sbjct: 682 SITINDILSSLKE---ENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-IPSSEIAD- 736

Query: 171 KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
                    + K++H NIVK  G C   + ++L++EY+E  +L+  L N
Sbjct: 737 ---------MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN 776

Length = 968

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
            +G+G  G+VYKA    +G+ +AVK        ++    +    EI  L ++ H NIV+ 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKIL--KKRSEKSKKDQTARREIRILRRLSHPNIVRL 63

Query: 192 YGFCSHARHSFLVYEYLERGSLATNLSND 220
                   H +LV EY E G L   LS  
Sbjct: 64  IDAFEDKDHLYLVMEYCEGGDLFDYLSRG 92

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
            +G G  GSVY A    +GE +AVK     L GD   + +    EI  L+ ++H NIV++
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKS--VELSGDSEEELEALEREIRILSSLQHPNIVRY 64

Query: 192 YGFC-SHARHSFLVY-EYLERGSLA 214
           YG      +++  ++ EY+  GSL+
Sbjct: 65  YGSERDEEKNTLNIFLEYVSGGSLS 89

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 65.3 bits (160), Expect = 8e-13
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            F+    IG GG G VYKA    +G+ +A+K     +  +    +++ + EI+ L K +H
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKV----IKLESKEKKEKIINEIQILKKCKH 56

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLA 214
            NIVK+YG        ++V E+   GSL 
Sbjct: 57  PNIVKYYGSYLKKDELWIVMEFCSGGSLK 85

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEF--LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+  E     P  +   +AVK        D    +K+F  E E LT  +H N
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDA---RKDFEREAELLTNFQHEN 69

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLA 214
           IVKFYG C+      +V+EY+E G L 
Sbjct: 70  IVKFYGVCTEGDPPIMVFEYMEHGDLN 96

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +D +    +G G  G VYK    P+G+  A+KK H          +K+ L E++ L    
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVD---GDEEFRKQLLRELKTLRSCE 57

Query: 185 HRNIVKFYG-FCSHARHSFLVYEYLERGSLA 214
              +VK YG F      S +V EY++ GSLA
Sbjct: 58  SPYVVKCYGAFYKEGEIS-IVLEYMDGGSLA 87

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G  G VYK  L     +AVK   S LP D    +++FL E E L +  H NIVK  G
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPD---LKRKFLQEAEILKQYDHPNIVKLIG 59

Query: 194 FCSHARHSFLVYEYLERGSLATNLSNDAAA 223
            C   +  ++V E +  GSL T L      
Sbjct: 60  VCVQKQPIYIVMELVPGGSLLTFLRKKKNR 89

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFL-----AEIEALTKIRHRN 187
           IG+G  GSVY      SGE +AVK+   P       D+K  +      EI  L +++H N
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           IV++ G    A H  +  EY+  GS+A  L+N  A EE
Sbjct: 68  IVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEE 105

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
             +      IG G  G V   +   G+ +AVK     L  D  A Q  FLAE   +T +R
Sbjct: 5   SKELKLGATIGKGEFGDVMLGDY-RGQKVAVKC----LKDDSTAAQA-FLAEASVMTTLR 58

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           H N+V+  G        ++V EY+ +GSL
Sbjct: 59  HPNLVQLLGVVLQGNPLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAEL----PSGE--FLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + D   K  +G G  G V+ AE     P+ +   +AVK    P     +A +K+F  E E
Sbjct: 4   RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAARKDFQREAE 59

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            LT ++H +IVKFYG C       +V+EY++ G L
Sbjct: 60  LLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDL 94

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 127 DFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE---FLAEIEALTK 182
           D++    IG G  G+V K      G+ L  K+            +KE    ++E+  L +
Sbjct: 1   DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDY-----GNMTEKEKQQLVSEVNILRE 55

Query: 183 IRHRNIVKFYG-FCSHARHS-FLVYEYLERGSLATNLSN 219
           ++H NIV++Y      +  + ++V EY E G LA  +  
Sbjct: 56  LKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQK 94

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 125 KNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPL-PGDQIAD-QKEFLAEIEALT 181
           + D++    IG+G +G VYKA ++ +GE +A+K     L PGD     Q+E    I  L 
Sbjct: 2   QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVI--KLEPGDDFEIIQQE----ISMLK 55

Query: 182 KIRHRNIVKFYGFCSHARHSFL--VYEYLERGSLA 214
           + RH NIV ++G  S+ R   L  V EY   GSL 
Sbjct: 56  ECRHPNIVAYFG--SYLRRDKLWIVMEYCGGGSLQ 88

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G V           +GE +AVK  +        +D   F  EIE L  + H NI
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSD---FEREIEILRTLDHENI 68

Query: 189 VKFYGFC--SHARHSFLVYEYLERGSL 213
           VK+ G C     R   L+ EYL  GSL
Sbjct: 69  VKYKGVCEKPGGRSLRLIMEYLPSGSL 95

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVK--KFHSPLPG--DQIADQKEFLAEIEALTKIRHRNI 188
           IG G  G VY A  L +GE +AVK  +     P    +IAD      E++ L  ++H N+
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIAD------EMKVLELLKHPNL 61

Query: 189 VKFYGFCSHARHSFLVYEYLERGSLA 214
           VK+YG   H    ++  EY   G+L 
Sbjct: 62  VKYYGVEVHREKVYIFMEYCSGGTLE 87

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAE----LPSGE--FLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + D   K+ +G G  G V+ AE    LP  +   +AVK     L     + +++F  E E
Sbjct: 4   RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKA----LKEASESARQDFQREAE 59

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            LT ++H++IV+FYG C+  R   +V+EY+  G L
Sbjct: 60  LLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDL 94

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G HG V+KA +  +GE +A+KK         I +Q   L EI+AL   +H  +VK  
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQ--ALREIKALQACQHPYVVKLL 65

Query: 193 GFCSHARHSFLVYEYL 208
               H     LV EY+
Sbjct: 66  DVFPHGSGFVLVMEYM 81

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G VYKA +  +GE +A+KK    L  +     K  L EI+ L ++ H NI+K  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIK--LRFESEGIPKTALREIKLLKELNHPNIIKLL 64

Query: 193 GFCSHARHSFLVYEYLE 209
               H    +LV+E+++
Sbjct: 65  DVFRHKGDLYLVFEFMD 81

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
             FD    +G G +GSVYKA    +G+ +A+K    P+      D +E + EI  L +  
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVV--PVEE----DLQEIIKEISILKQCD 56

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
              IVK+YG        ++V EY   GS+
Sbjct: 57  SPYIVKYYGSYFKNTDLWIVMEYCGAGSV 85

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            ++    IG G  G VY       G+   +K+    L      ++++ L E++ L K+ H
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKE--IDLSNMSEKEREDALNEVKILKKLNH 58

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLA 214
            NI+K+Y          +V EY + G L+
Sbjct: 59  PNIIKYYESFEEKGKLCIVMEYADGGDLS 87

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 50.9 bits (123), Expect = 9e-08
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
            +G G +G VYKA +  +GE +A+KK       + I      L EI  L +++H NIVK 
Sbjct: 6   KLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGI--PSTALREISLLKELKHPNIVKL 63

Query: 192 YGFCSHARHSFLVYEYLER 210
                  R  +LV+EY + 
Sbjct: 64  LDVIHTERKLYLVFEYCDM 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFY 192
           +G G  G VY A     + +A+K     L   +  + + FL EI+ L  + H  NIVK Y
Sbjct: 8   LGEGSFGEVYLARDR--KLVALKVLAKKLE-SKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 193 GFCSHARHSFLVYEYLERGSL 213
            F       +LV EY++ GSL
Sbjct: 65  DFFQDEGSLYLVMEYVDGGSL 85

Length = 384

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA--EIEALTKIRHRNIVK 190
           IG G  G VYKA +  +G+ +A+KK         +  Q + L   EI  +   +H NIV 
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMR-------LRKQNKELIINEILIMKDCKHPNIVD 79

Query: 191 FYGFCSHARHSFLVYEYLERGSLA 214
           +Y         ++V EY++ GSL 
Sbjct: 80  YYDSYLVGDELWVVMEYMDGGSLT 103

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G +G V K     +GE +A+KKF      D+   +K  L E++ L ++RH NIV   
Sbjct: 9   VGEGAYGVVLKCRNKATGEIVAIKKFKE-SEDDEDV-KKTALREVKVLRQLRHENIVNLK 66

Query: 193 GFCSHARHSFLVYEYLER 210
                    +LV+EY+ER
Sbjct: 67  EAFRRKGRLYLVFEYVER 84

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQ--KEFLAEIEALTKIRHRNIVK 190
           +G+G  GSVY+   L  G+F AVK+  S     Q   +  K+   EI  L+K++H NIV+
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEV-SLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 191 FYGFCSHARHSFLVYEYLERGSLA 214
           + G      + ++  E +  GSLA
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLA 90

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVK--KFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G G   S Y+A ++ +G  +AVK   +      +Q    +    EI  + ++ H +I++
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
             G      H  L  E++  GS++  LS   A +E
Sbjct: 68  MLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKE 102

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 15/89 (16%)

Query: 134 IGNGGHGSVYKAEL--PSGEFLA-------VKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +G G  G VYK EL  P+    A       +K+   P        Q+EF  E E ++ ++
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEP------KVQQEFRQEAELMSDLQ 66

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           H NIV   G C+  + + +++EYL  G L
Sbjct: 67  HPNIVCLLGVCTKEQPTCMLFEYLAHGDL 95

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G  G V K    P+G+ +AVK     L  ++ A QK+ L E++ L K     IV FY
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIR--LEINE-AIQKQILRELDILHKCNSPYIVGFY 65

Query: 193 GFCSHARHSFLVYEYLERGSLA 214
           G   +     +  EY++ GSL 
Sbjct: 66  GAFYNNGDISICMEYMDGGSLD 87

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G+G  G V+  +      +A+K        +    + +F+ E + + K+ H N+V+ YG
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-----EGAMSEDDFIEEAKVMMKLSHPNLVQLYG 66

Query: 194 FCSHARHSFLVYEYLERGSLATNL 217
            C+  R  F+V EY+  G L   L
Sbjct: 67  VCTKQRPIFIVTEYMANGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK    L        ++F  EIE L  ++H NI
Sbjct: 12  LGKGNFGSVELCRYDPLQDNTGEVVAVKK----LQHSTAEHLRDFEREIEILKSLQHDNI 67

Query: 189 VKFYGFC-SHARHSF-LVYEYLERGSLATNLSN 219
           VK+ G C S  R +  LV EYL  GSL   L  
Sbjct: 68  VKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQK 100

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIV 189
           IG G +G+VYKA +L +G F+A+KK   PL  + I      L EI  L ++    H NIV
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIP--LSTLREIALLKQLESFEHPNIV 64

Query: 190 KFYGFC-----SHARHSFLVYEYLERGSLATNLSN 219
           +    C            LV+E++++  LAT LS 
Sbjct: 65  RLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSK 98

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G+G  G V + E     G+ +  AVK   S    D + D   FL E   +  + H N++
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDD---FLKEAAIMHSLDHENLI 59

Query: 190 KFYGFCSHARHSF-LVYEYLERGSLATNLSNDAAAE 224
           + YG      H   +V E    GSL   L  DA   
Sbjct: 60  RLYGVV--LTHPLMMVTELAPLGSLLDRLRKDALGH 93

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD-QKEFLAEIEALTKIRH---RNI 188
           IG G +G+VY+   +P+G  +A+K  +   P D ++D Q+E    +  L+++R     NI
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQRE----VALLSQLRQSQPPNI 64

Query: 189 VKFYGFCSHARHSFLVYEYLERGSLAT 215
            K+YG        +++ EY E GS+ T
Sbjct: 65  TKYYGSYLKGPRLWIIMEYAEGGSVRT 91

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 154 AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           AVK      P      +++FL E++ L+++   NI +  G C+      ++ EY+E G L
Sbjct: 50  AVKV---LRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Query: 214 ATNLS 218
              L 
Sbjct: 107 NQFLQ 111

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 134 IGNGGHGSVYKA--ELPSGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G V +   +LP  +   +A+K       G     + +FL E   + +  H NI+
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTLK---AGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 190 KFYGFCSHARHSFLVYEYLERGSLATNL 217
           +  G  + +R   ++ EY+E GSL   L
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 138 GHGSVYKAEL--------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           G G   K EL         +GE +AVK       G+ IAD K+   EIE L  + H NIV
Sbjct: 13  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIV 69

Query: 190 KFYGFCSH--ARHSFLVYEYLERGSL 213
           K+ G C+        L+ E+L  GSL
Sbjct: 70  KYKGICTEDGGNGIKLIMEFLPSGSL 95

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 134 IGNGGHGSVYKAEL----PSGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+ AE     P  +   +AVK     L       +K+F  E E LT ++H +
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKT----LKDASDNARKDFHREAELLTNLQHEH 68

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IVKFYG C       +V+EY++ G L
Sbjct: 69  IVKFYGVCVEGDPLIMVFEYMKHGDL 94

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           R + +F  +  +G+G  G V++    +   +A+K   S    D +  Q++F  E++AL +
Sbjct: 3   RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKS----DDLLKQQDFQKEVQALKR 58

Query: 183 IRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           +RH++++  +  CS     +++ E +E+GSL   L +
Sbjct: 59  LRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRS 95

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 13/83 (15%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVK----KFHSPLPGDQIADQKEFLAEIEALTKI-RHR 186
            +G+G  GSVY A    +GE +A+K    KF+S        ++   L E+++L K+  H 
Sbjct: 6   QLGDGTFGSVYLARNKETGELVAIKKMKKKFYSW-------EECMNLREVKSLRKLNEHP 58

Query: 187 NIVKFYGFCSHARHSFLVYEYLE 209
           NIVK           + V+EY+E
Sbjct: 59  NIVKLKEVFRENDELYFVFEYME 81

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 134 IGNGGHGSVYKA--ELPSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G+G  GSV K    + SG+ +  AVK           A +KEFL E   + ++ H  IV
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLK---QEHIAAGKKEFLREASVMAQLDHPCIV 59

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           +  G C       LV E    G L
Sbjct: 60  RLIGVCK-GEPLMLVMELAPLGPL 82

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 134 IGNGGHGSVYK---AELPSGEF---LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G VY+     +  GE    +A+K  +       + ++ EFL E   + +    +
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN---ENASMRERIEFLNEASVMKEFNCHH 70

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           +V+  G  S  + + +V E + +G L + L
Sbjct: 71  VVRLLGVVSTGQPTLVVMELMAKGDLKSYL 100

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 134 IGNGGHGSVYKAELP------SGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           +G+G  G VY+          SG   +AVK       G    ++KEFL E   ++   H 
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRK---GATDQEKKEFLKEAHLMSNFNHP 59

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           NIVK  G C      +++ E +E G L + L
Sbjct: 60  NIVKLLGVCLLNEPQYIIMELMEGGDLLSYL 90

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD-QKEFLAEIEALTKI 183
             F+    IG G +G VYKA    +G+ +A+K          I D ++E   E   L K 
Sbjct: 6   GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDI------IEDEEEEIKEEYNILRKY 59

Query: 184 -RHRNIVKFYGFCSHARHS------FLVYEYLERGSLATNLSN 219
             H NI  FYG              +LV E    GS  T+L  
Sbjct: 60  SNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGS-VTDLVK 101

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKF 191
           IG G  G+V K    PSG  +AVK+  S +      +QK  L +++ + +      IVKF
Sbjct: 12  IGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE---KEQKRLLMDLDVVMRSSDCPYIVKF 68

Query: 192 YG 193
           YG
Sbjct: 69  YG 70

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE------FLAEIEALTKIRHR 186
           IG G +G VY A  + +GE +AVK+   P       D ++        +EIE L  + H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           NIV++ GF +   +  +  EY+  GS+ + L      EE
Sbjct: 69  NIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEE 107

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           + EF+ E + + K+ H  +V+ YG C+  R  ++V EY+  G L   L
Sbjct: 43  EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 13/83 (15%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEF----LAEIEALTKIRHRNI 188
           IG G +G VYKA    +GE +A+KK    +  +   +   F    + EI+ L K+RH NI
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKK----IRMENEKE--GFPITAIREIKLLQKLRHPNI 60

Query: 189 VKFYGFC-SHARHS-FLVYEYLE 209
           V+      S  + S ++V+EY++
Sbjct: 61  VRLKEIVTSKGKGSIYMVFEYMD 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 134 IGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G  G V+   L +     AVK     LP D  A   +FL E   L +  H NIV+  
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 59

Query: 193 GFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           G C+  +  ++V E ++ G   T L  +  
Sbjct: 60  GVCTQKQPIYIVMELVQGGDFLTFLRTEGP 89

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 134 IGNGGHGSVYKAELP-----SGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+ A+        GE L  VK             Q EF  E++   K+ H+N
Sbjct: 13  LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT---KDENLQSEFRRELDMFRKLSHKN 69

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           +V+  G C  A   +++ EY + G L
Sbjct: 70  VVRLLGLCREAEPHYMILEYTDLGDL 95

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 128 FDAKYCIGNGGHGSVYKA---ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           ++ + CIG G +G VYKA       G+  A+KKF            +    EI  L +++
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGD-KEQYTGISQSACREIALLRELK 60

Query: 185 HRNIVKFYG-FCSHARHS-FLVYEYLE 209
           H N+V     F  HA  S +L+++Y E
Sbjct: 61  HENVVSLVEVFLEHADKSVYLLFDYAE 87

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G G  G V+K  L     +AVK     LP +    + +FL+E   L +  H NIVK  G
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQEL---KIKFLSEARILKQYDHPNIVKLIG 59

Query: 194 FCSHARHSFLVYEYLERGSLATNL 217
            C+  +  ++V E +  G   + L
Sbjct: 60  VCTQRQPIYIVMELVPGGDFLSFL 83

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG+G  G V+         +A+K        +    +++F+ E + + K+ H  +V+ YG
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-----EGAMSEEDFIEEAQVMMKLSHPKLVQLYG 66

Query: 194 FCSHARHSFLVYEYLERGSLATNL 217
            C+      LV+E++E G L+  L
Sbjct: 67  VCTERSPICLVFEFMEHGCLSDYL 90

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLA---EIEALTKIRHRNIVK 190
           +G G +G+VY      G+ +AVK+       + +A +KE+     E++ L  ++H NIV+
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELD-TSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLS 218
           + G C       +  E++  GS+++ L+
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISSILN 94

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEF---LAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           ND   +  IG G  G V KA +         A+K+       D   D ++F  E+E L K
Sbjct: 7   NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 63

Query: 183 I-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +  H NI+   G C H  + +L  EY   G+L
Sbjct: 64  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNL 95

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G G  G V++    +   +AVK      PG    D K+FLAE + + K+RH  +++ Y 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLK---PGT--MDPKDFLAEAQIMKKLRHPKLIQLYA 68

Query: 194 FCSHARHSFLVYEYLERGSLATNLSNDA 221
            C+     ++V E ++ GSL   L   A
Sbjct: 69  VCTLEEPIYIVTELMKYGSLLEYLQGGA 96

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G+G  G VYKA+       A  K       +++ D   F+ EI+ L++ +H NIV  Y 
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELED---FMVEIDILSECKHPNIVGLYE 69

Query: 194 FCSHARHSFLVYEYLERGSL 213
              +    +++ E+ + G+L
Sbjct: 70  AYFYENKLWILIEFCDGGAL 89

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 34/91 (37%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G VY+A +  SGE +A+KK       D I      L EI  L  +RH NIV+  
Sbjct: 15  IGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISS--LREITLLLNLRHPNIVELK 72

Query: 193 GFC--SHARHSFLVYEYLER--GSLATNLSN 219
                 H    FLV EY E+   SL  N+  
Sbjct: 73  EVVVGKHLDSIFLVMEYCEQDLASLLDNMPT 103

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK     L  D +   +EFL E   + +I
Sbjct: 5   RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTME-VEEFLKEAAVMKEI 59

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 60  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 89

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 134 IGNGGHGSVYKAELPS-GEFLAVK--KFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           I  G +G V+ A+  S G+  A+K  K    +  +Q+    + L E + L++ +   +VK
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQV---DQVLTERDILSQAQSPYVVK 57

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
            Y      ++ +LV EYL  G LA+ L N  + +E
Sbjct: 58  LYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDE 92

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G  G V++  L   G         +  PG     +++FL+E   + +  H NI++  
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLE 72

Query: 193 GFCSHARHSFLVYEYLERGSL 213
           G  +  + + ++ EY+E G+L
Sbjct: 73  GVVTKFKPAMIITEYMENGAL 93

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD-QKEFLAEIEALTKIRHRNIVKF 191
           +G+G  G+VYKA  L +   LAVK     +P D   + QK+ ++E+E L K     I+ F
Sbjct: 9   LGHGNGGTVYKAYHLLTRRILAVKV----IPLDITVELQKQIMSELEILYKCDSPYIIGF 64

Query: 192 YG-FCSHARHSFLVYEYLERGSL 213
           YG F    R S +  E+++ GSL
Sbjct: 65  YGAFFVENRIS-ICTEFMDGGSL 86

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G G  G V+         +AVK      PG      + FL E + + K+RH  +V+ Y 
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLK---PGTM--SPEAFLQEAQIMKKLRHDKLVQLYA 68

Query: 194 FCSHARHSFLVYEYLERGSLATNLSND 220
            CS     ++V EY+ +GSL   L + 
Sbjct: 69  VCSEEEPIYIVTEYMSKGSLLDFLKSG 95

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQI-ADQKEFLAEIEALTKIRHRNIVKF 191
           IG G    VY A  LP+ E +A+K+    +  ++      E   E++A+++  H N+VK+
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKR----IDLEKCQTSVDELRKEVQAMSQCNHPNVVKY 64

Query: 192 YGFCSHARHSFLVYEYLERGSLA 214
           Y         +LV  YL  GSL 
Sbjct: 65  YTSFVVGDELWLVMPYLSGGSLL 87

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 134 IGNGGHGSVYKAE----LPSGEFL--AVKKFHSPLPGDQIAD-QKEFLAEIEALTKIRHR 186
           IG G  G V++A     LP   F   AVK     L  +  AD Q +F  E   + +  H 
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKM----LKEEASADMQADFQREAALMAEFDHP 68

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSL 213
           NIVK  G C+  +   L++EY+  G L
Sbjct: 69  NIVKLLGVCAVGKPMCLLFEYMAYGDL 95

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKF-HSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           +G G +G V K +   +G+ +A+KKF  S    D    +K  + EI  L ++RH N+V  
Sbjct: 9   VGEGSYGMVMKCKHKETGQIVAIKKFLESE---DDKMVKKIAMREIRMLKQLRHENLVNL 65

Query: 192 YGFCSHARHSFLVYEYLER 210
                  +  +LV+E+++ 
Sbjct: 66  IEVFRRKKRLYLVFEFVDH 84

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKF---HSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG+G  G+VYK    P+G   A+K     H      QI        EIE L  + H N+V
Sbjct: 82  IGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQIC------REIEILRDVNHPNVV 135

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           K +    H     ++ E+++ GSL
Sbjct: 136 KCHDMFDHNGEIQVLLEFMDGGSL 159

Length = 353

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G VYKA +  + E +A+KK    L  +        + EI  L +++H NIV+  
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIR--LEQEDEGVPSTAIREISLLKEMQHGNIVRLQ 67

Query: 193 GFCSHARHSFLVYEYLE 209
                 +  +LV+EYL+
Sbjct: 68  DVVHSEKRLYLVFEYLD 84

Length = 294

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE---FLAEIEALT 181
           +DF+    +G G  G V       SG++ A+K     L   +I   K+    L E   L 
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKI----LSKAKIVKLKQVEHVLNEKRILQ 56

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            IRH  +V  YG      + +LV EY+  G L
Sbjct: 57  SIRHPFLVNLYGSFQDDSNLYLVMEYVPGGEL 88

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G G  GSV K  L +   +   K  +  P   +  QK+ L E+E     +   IVK+YG
Sbjct: 9   LGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDL--QKQILRELEINKSCKSPYIVKYYG 66

Query: 194 FCSHARHSFL--VYEYLERGSL 213
                  S +    EY E GSL
Sbjct: 67  AFLDESSSSIGIAMEYCEGGSL 88

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 134 IGNGGHGSVYKAEL---PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           IGNG  G V  +E+        + VK+  +        +Q EFL + +    ++H NI++
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKA---NASSKEQNEFLQQGDPYRILQHPNILQ 59

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSND 220
             G C  A    LV+EY E G L + LS +
Sbjct: 60  CLGQCVEAIPYLLVFEYCELGDLKSYLSQE 89

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA---EIEALTKIRHRNI 188
            +G G  G VY   ++ +G  LAVK+   P   D    +KE  A   EI+ L  ++H  I
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQV--PFDPDSPETKKEVNALECEIQLLKNLQHERI 66

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           V++YG         +  EY+  GS+
Sbjct: 67  VQYYGCLRDDETLSIFMEYMPGGSV 91

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +++F+ E + + K+ H  +V+ YG C+  +  ++V E++E G L
Sbjct: 43  EEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G  G+V + E  +G+ +AVK     +        + FL E   +TK+ H+N+V+  G
Sbjct: 14  IGEGEFGAVLQGEY-TGQKVAVKNIKCDVTA------QAFLEETAVMTKLHHKNLVRLLG 66

Query: 194 FCSHARHSFLVYEYLERGSLATNL 217
              H    ++V E + +G+L   L
Sbjct: 67  VILH-NGLYIVMELMSKGNLVNFL 89

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G VYKA    +GE +A+KK    L  +        + EI  L ++ H NIVK  
Sbjct: 8   IGEGTYGVVYKARNKLTGEVVALKKIR--LDTETEGVPSTAIREISLLKELNHPNIVKLL 65

Query: 193 GFCSHARHSFLVYEYL 208
                    +LV+E+L
Sbjct: 66  DVIHTENKLYLVFEFL 81

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 134 IGNGGHGSVYKAEL-PSGE---FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G V +  L   G+   F+A+K   S     Q   +++FL+E   + +  H NI+
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHPNII 68

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
              G  + +R   ++ E++E G+L
Sbjct: 69  HLEGVVTKSRPVMIITEFMENGAL 92

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLA---VKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           IGNG  G V   E+ SG   A   VK+         + +Q +FL E +    ++H N+++
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRV---SASVQEQMKFLEEAQPYRSLQHSNLLQ 59

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
             G C+      LV E+   G L   L +   AE +
Sbjct: 60  CLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELM 95

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 134 IGNGGHGSVYKAE------LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V KA             +AVK           ++ ++ L+E   L ++ H +
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKE---NASSSELRDLLSEFNLLKQVNHPH 64

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           ++K YG CS      L+ EY + GSL + L
Sbjct: 65  VIKLYGACSQDGPLLLIVEYAKYGSLRSFL 94

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G VYKA +  +GE +A+KK    L  +        + EI  L ++ H NIV+  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKIR--LETEDEGVPSTAIREISLLKELNHPNIVRLL 64

Query: 193 GFCSHARHSFLVYEYLE 209
                    +LV+E+L+
Sbjct: 65  DVVHSENKLYLVFEFLD 81

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPL--PGDQIADQKEFLAEIEALTKIRHRNIVK 190
           IG G +G+VYKA +  SG F+A+K         G  ++  +E +A ++ L    H NIV+
Sbjct: 8   IGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVRE-VALLKRLEAFDHPNIVR 66

Query: 191 FYGFCSHARHS-----FLVYEYLER 210
               C+ +R        LV+E++++
Sbjct: 67  LMDVCATSRTDRETKVTLVFEHVDQ 91

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           IG G +G+V+KA    + E +A+K+        ++ D  E      L EI  L +++H+N
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRV-------RLDDDDEGVPSSALREICLLKELKHKN 60

Query: 188 IVKFYGFCSHARHSFLVYEYLER 210
           IV+ Y      +   LV+EY ++
Sbjct: 61  IVRLYDVLHSDKKLTLVFEYCDQ 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI--------ADQKEFLAEIEALTKIRH 185
           +G+G  G VY+     G +         L              D+ +FL E   ++K  H
Sbjct: 14  LGHGAFGEVYE-----GLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNH 68

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +NIV+  G        F++ E +  G L
Sbjct: 69  QNIVRLIGVSFERLPRFILLELMAGGDL 96

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           +      IG G  G V   +   G  +AVK   +       A  + FLAE   +T++RH 
Sbjct: 7   ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHS 59

Query: 187 NIVKFYGFCSHARHS-FLVYEYLERGSLATNL 217
           N+V+  G     +   ++V EY+ +GSL   L
Sbjct: 60  NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 120 EIIR--AKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAE 176
           +I+R   ++D++    +G+G +G VYKA  L +GE  AVK      PGD  +  ++   E
Sbjct: 1   DILRRNPQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLE-PGDDFSLIQQ---E 56

Query: 177 IEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           I  + + +H NIV ++G        ++  EY   GSL
Sbjct: 57  IFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSL 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 129 DAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           D KY     IG G +G V  A    + E +A+KK  +    D   D K  L EI+ L  +
Sbjct: 4   DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAF--DNRIDAKRTLREIKLLRHL 61

Query: 184 RHRNIVK 190
            H N++ 
Sbjct: 62  DHENVIA 68

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQ-KEFLAEIEALTKIRHRNIVKF 191
           IG+G  G+VY A ++ + E +A+KK      G Q  ++ ++ + E+  L K+RH N +++
Sbjct: 23  IGHGSFGAVYFARDVRNSEVVAIKKM--SYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 80

Query: 192 YGFCSHARHSFLVYEY 207
            G       ++LV EY
Sbjct: 81  RGCYLREHTAWLVMEY 96

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVK--KFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           I  G +G VY+A +  +GE +A+K  K      G  I      L EI  L K++H NIV 
Sbjct: 13  IEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITS----LREINILLKLQHPNIVT 68

Query: 191 F----YGFCSHARHSFLVYEYLE 209
                 G  S+    ++V EY+E
Sbjct: 69  VKEVVVG--SNLDKIYMVMEYVE 89

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 135 GNGGHGSVYK---AELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           G+ G  S+Y    A   +GE +AVK            +   +  EI  L  + H NIVK+
Sbjct: 15  GHFGKVSLYCYDPANDGTGEMVAVKTLKR---ECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 192 YGFCSHA--RHSFLVYEYLERGSL 213
            G CS    +   L+ EY+  GSL
Sbjct: 72  KGCCSEQGGKGLQLIMEYVPLGSL 95

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 20/91 (21%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD-QKEFLAEIEALTKIRHRNIVK 190
           CIG G  G VYKA +  + + +A+K        D+I D Q+    EI+ L++ R   I K
Sbjct: 8   CIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQ----EIQFLSQCRSPYITK 63

Query: 191 FYGFCSHARHSFL-------VYEYLERGSLA 214
           +YG       SFL       + EY   GS  
Sbjct: 64  YYG-------SFLKGSKLWIIMEYCGGGSCL 87

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 134 IGNGGHGSVYKAE------LPSGEF-LAVKKFHSPLPGDQI--AD-----QKEFLAEIEA 179
           +G G  G V+  E      LP+ +F   V+K    L   +I   D     + +FL E++ 
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKI 72

Query: 180 LTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           L++++  NI++  G C       ++ EY+E G L   LS
Sbjct: 73  LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLS 111

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G  GSV K + +P+G  +A K  H    G + + +K+ L E++ + + R   IV FY
Sbjct: 13  LGAGNGGSVSKVKHIPTGTVMAKKVVHI---GAKSSVRKQILRELQIMHECRSPYIVSFY 69

Query: 193 GFCSHARHSFLVYEYLERGSL 213
           G   +  +  +  E+++ GSL
Sbjct: 70  GAFLNENNICMCMEFMDCGSL 90

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 134 IGNGGHGSVYKAE-LPSGEF----LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G+VYK   +P GE     +A+K              KE L E   +  + H ++
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSP---KANKEILDEAYVMASVDHPHV 71

Query: 189 VKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAA 223
           V+  G C  ++   L+ + +  G L   + N    
Sbjct: 72  VRLLGICLSSQVQ-LITQLMPLGCLLDYVRNHKDN 105

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + DF+    IG+G +G VYKA  + +GE  A+K      PG+  A  ++   EI  +   
Sbjct: 8   QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLE-PGEDFAVVQQ---EIIMMKDC 63

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H NIV ++G        ++  E+   GSL
Sbjct: 64  KHSNIVAYFGSYLRRDKLWICMEFCGGGSL 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLA---VKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           IGNG  G V   E   G   A   VK+  +    D+   Q  FL E++   ++ H N+++
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDE---QLLFLQEVQPYRELNHPNVLQ 59

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSNDAAAE 224
             G C  +    LV E+   G L   L ++    
Sbjct: 60  CLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMV 93

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 127 DFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
           DF+    IG G  G V+K    +     A+K+    L      +++E + E   L K+  
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQID--LSKMNRREREEAIDEARVLAKLDS 58

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
             I+++Y          +V EY E G L
Sbjct: 59  SYIIRYYESFLDKGKLNIVMEYAENGDL 86

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQ-KEFLAEIEALTKIRHRNIVKF 191
           IG+G  G+VY A ++ + E +A+KK      G Q  ++ ++ + E+  L ++RH N +++
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMS--YSGKQSNEKWQDIIKEVRFLQQLRHPNTIEY 80

Query: 192 YGFCSHARHS-FLVYEY 207
            G C    H+ +LV EY
Sbjct: 81  KG-CYLREHTAWLVMEY 96

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 134 IGNGGHGSVYKAE---------LPSGEF------LAVKKFHSPLPGDQIADQKEFLAEIE 178
           +G G  G V+  E           + EF      +AVK   + +       + +FL EI+
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTA---RNDFLKEIK 69

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
            ++++++ NI++  G C       ++ EY+E G L   LS
Sbjct: 70  IMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLS 109

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 134 IGNGGHGSVYKAEL-----PSGEF-LAVKKFHSPLPGDQI-ADQKEFLAEIEALTKI-RH 185
           +G G  G V KAE      P+    +AVK     L  D    D  + ++E+E +  I +H
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKM----LKDDATEKDLSDLVSEMEMMKMIGKH 75

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +NI+   G C+     ++V EY   G+L
Sbjct: 76  KNIINLLGVCTQEGPLYVVVEYAAHGNL 103

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
            +F  +  IG G    VYKA  L  G  +A+KK       D  A Q   L EI+ L ++ 
Sbjct: 2   GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQD-CLKEIDLLKQLD 60

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           H N++K+           +V E  + G L
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDL 89

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.92
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.81
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.79
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.79
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.74
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.7
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.7
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.69
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.66
KOG3653	534	consensus Transforming growth factor beta/activin	99.64
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.64
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.62
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.62
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.62
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.6
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.55
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.54
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.54
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.52
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.51
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.51
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.51
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.5
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.5
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.5
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.5
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.5
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.49
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.49
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.49
PHA02988	283	hypothetical protein; Provisional	99.49
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.48
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.48
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.48
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.48
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.47
KOG0605	550	consensus NDR and related serine/threonine kinases	99.47
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.47
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.47
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.47
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.46
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.46
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.46
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.46
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.45
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.45
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.44
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.43
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.43
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.43
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.43
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.43
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.43
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.43
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.43
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.42
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.42
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.42
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.42
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.42
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.42
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.41
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.41
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.41
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.41
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.4
KOG0586	596	consensus Serine/threonine protein kinase [General	99.4
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.4
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.4
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.4
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.4
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.4
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.4
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.4
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.4
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.39
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.39
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.39
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.39
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.39
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.39
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.39
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.39
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.39
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.38
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.38
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.38
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.38
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.38
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.38
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.38
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.38
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.37
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.37
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.37
KOG0610	459	consensus Putative serine/threonine protein kinase	99.37
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.37
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.37
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.36
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.36
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.36
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.36
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.36
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.36
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.36
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.36
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.36
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.36
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.36
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.36
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.36
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.35
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.35
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.35
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.35
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.35
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.35
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.35
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.34
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.34
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.34
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.34
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.34
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.34
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.34
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.34
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.34
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.34
KOG0198	313	consensus MEKK and related serine/threonine protei	99.34
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.33
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.33
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.33
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.33
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.33
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.33
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.33
PTZ00267	478	NIMA-related protein kinase; Provisional	99.33
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.33
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.33
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.33
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.33
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.32
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.32
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.32
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.32
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.32
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.32
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.32
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.32
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.32
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.32
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.32
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.31
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.31
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.31
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.31
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.31
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.31
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.31
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.31
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.31
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.31
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.31
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.31
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.31
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.31
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.3
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.3
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.3
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.3
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.3
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.3
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.3
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.3
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.3
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.3
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.3
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.3
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.29
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.29
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.29
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.29
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.29
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.28
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.28
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.28
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.28
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.28
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.28
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.28
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.28
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.28
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.28
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.28
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.28
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.28
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.28
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.28
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.28
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.28
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.28
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.28
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.28
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.27
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.27
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.27
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.27
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.27
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.27
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.27
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.27
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.27
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.27
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.27
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.27
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.26
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.26
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.26
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.26
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.26
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.26
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.26
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.26
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.25
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.25
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.25
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.25
KOG0578	550	consensus p21-activated serine/threonine protein k	99.25
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.25
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.25
KOG0589	426	consensus Serine/threonine protein kinase [General	99.25
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.25
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.25
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.24
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.24
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.24
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.24
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.24
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.24
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.23
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.23
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.23
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.23
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.23
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.23
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.23
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.23
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.23
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.22
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.22
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.22
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.22
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.22
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.22
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.22
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.22
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.21
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.21
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.21
PHA03212	391	serine/threonine kinase US3; Provisional	99.21
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.21
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.21
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.2
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.2
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.2
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.2
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.2
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.2
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.19
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.19
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.19
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.19
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.19
PLN00009	294	cyclin-dependent kinase A; Provisional	99.19
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.19
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.18
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.18
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.18
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.18
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.18
PTZ00283	496	serine/threonine protein kinase; Provisional	99.18
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.18
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.18
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.18
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.17
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.17
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.17
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.17
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.17
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.17
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.17
PRK09188	365	serine/threonine protein kinase; Provisional	99.17
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.16
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.15
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.15
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.15
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.15
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.14
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.14
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.14
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.14
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.14
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.14
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.14
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.13
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.13
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.13
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.12
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.12
PHA03211	461	serine/threonine kinase US3; Provisional	99.12
PTZ00036	440	glycogen synthase kinase; Provisional	99.12
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.11
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.11
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.11
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.11
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.11
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.11
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.1
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.09
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.09
PHA03209	357	serine/threonine kinase US3; Provisional	99.09
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.09
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.08
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.08
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.07
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.06
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.06
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.06
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.06
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.05
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.05
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.04
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.04
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.04
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.03
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.02
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.02
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.02
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.02
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.02
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.02
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.02
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.0
PRK10345	210	hypothetical protein; Provisional	99.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.99
PHA03207	392	serine/threonine kinase US3; Provisional	98.98
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.98
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.97
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.97
KOG0584	632	consensus Serine/threonine protein kinase [General	98.96
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.95
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.95
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.94
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.92
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.91
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.89
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.89
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.89
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.89
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.89
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.88
PTZ00284	467	protein kinase; Provisional	98.87
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.85
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.85
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.82
PRK14879	211	serine/threonine protein kinase; Provisional	98.81
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.81
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.8
PHA03210	501	serine/threonine kinase US3; Provisional	98.8
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.78
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.78
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.78
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.77
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.76
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.75
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.73
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.72
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.72
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.63
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.62
KOG1152	772	consensus Signal transduction serine/threonine kin	98.61
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.6
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.6
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.56
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.5
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.46
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.42
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.36
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.36
smart00090	237	RIO RIO-like kinase.	98.33
PLN03150	623	hypothetical protein; Provisional	98.32
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.28
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.28
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.26
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.2
PRK12274	218	serine/threonine protein kinase; Provisional	98.17
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.16
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	98.14
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.08
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.05
PHA02882	294	putative serine/threonine kinase; Provisional	98.03
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.93
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.93
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.89
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.78
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	97.73
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.71
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.65
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.59
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	97.57
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.55
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.5
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	97.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.19
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	97.13
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.01
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	96.81
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	96.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.29
COG0661	517	AarF Predicted unusual protein kinase [General fun	96.04
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.98
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.94
KOG1235	538	consensus Predicted unusual protein kinase [Genera	95.72
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.68
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	95.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.65
KOG1243	690	consensus Protein kinase [General function predict	94.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	94.41
PRK10593	297	hypothetical protein; Provisional	94.36
PLN02876	822	acyl-CoA dehydrogenase	94.34
smart00370	26	LRR Leucine-rich repeats, outliers.	94.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.03
PLN03150	623	hypothetical protein; Provisional	94.01
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	93.94
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	93.58
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	92.75
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	92.74
PRK09550	401	mtnK methylthioribose kinase; Reviewed	92.61
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.56
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	92.18
KOG4258	1025	consensus Insulin/growth factor receptor (contains	92.12
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	92.03
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	91.75
KOG3087	229	consensus Serine/threonine protein kinase [General	91.72
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.53
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.35
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	91.11
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	90.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	90.34
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	90.29
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	90.24
COG0478	304	RIO-like serine/threonine protein kinase fused to	89.34
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	88.86
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	88.65
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	87.65
KOG0590	601	consensus Checkpoint kinase and related serine/thr	87.28
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	87.27
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	86.75
KOG0590	601	consensus Checkpoint kinase and related serine/thr	85.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	84.9
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	84.79
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	84.53
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.02
KOG1266	458	consensus Protein kinase [Signal transduction mech	83.67
PF01636	239	APH: Phosphotransferase enzyme family This family	83.29
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	83.29
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	83.25
KOG3021	313	consensus Predicted kinase [General function predi	82.9
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	81.8
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	81.76
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	81.56
PF15102	146	TMEM154: TMEM154 protein family	80.89
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	80.69
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	80.33

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=6.5e-26  Score=203.64  Aligned_cols=202  Identities=26%  Similarity=0.459  Sum_probs=130.4

Q ss_pred             CCCCceeeccccceeeecCCCccccccCcccccCCCCCCCCCC--CCCccCCCCCCCCCCCccEEEehhhHHHHHHHHHH
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVK--GLQTCKALTPHKQSFGTKWLIIVFHLLGALFTSIV   78 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~~Lcg~~~--~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   78 (226)
                      +++|+.||+|+|+|+|.+|..++|..+...++.||+.+||..+  +.++|...    . ....+.+++++++++++++++
T Consensus       570 l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~----~-~~~~~~~~~~~~~~~~~~~~~  644 (968)
T PLN00113        570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV----R-KTPSWWFYITCTLGAFLVLAL  644 (968)
T ss_pred             CcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc----c-ccceeeeehhHHHHHHHHHHH
Confidence            4678999999999999999988889999999999999998653  23455321    1 122233333333333333333


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCcc-chhhh-hcCCCcccHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEE
Q 040605           79 LTAIFFIFQKRTLDSGEGQRSPQNSQ-ELLSI-LNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAV  155 (226)
Q Consensus        79 ~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vav  155 (226)
                      ++++++++++|++...+ ........ +.... ......++++++.   ..+...++||+|+||.||+|.. .++..|||
T Consensus       645 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vav  720 (968)
T PLN00113        645 VAFGFVFIRGRNNLELK-RVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVV  720 (968)
T ss_pred             HHHHHHHHHhhhccccc-ccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEE
Confidence            33333333333221111 01110000 00000 0111123444443   4567788999999999999976 58899999


Q ss_pred             EEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCChhhhccC
Q 040605          156 KKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       156 k~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      |++.. ...       ....|++.+++++|||||+++|+|...+..++|||||++|+|.++++.
T Consensus       721 K~~~~-~~~-------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~  776 (968)
T PLN00113        721 KEIND-VNS-------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN  776 (968)
T ss_pred             EEccC-Ccc-------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc
Confidence            99864 111       123468889999999999999999999999999999999999999864

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-24  Score=172.55  Aligned_cols=106  Identities=41%  Similarity=0.732  Sum_probs=94.8

Q ss_pred             CCCcccHHHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccce
Q 040605          112 FKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF  191 (226)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l  191 (226)
                      ....|++.++..||++|+..+.||+|+||.||+|.+++|..||||++.......    .++|.+|++++++++|||||+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----~~eF~~Ei~~ls~l~H~Nlv~L  136 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----EREFLNEVEILSRLRHPNLVKL  136 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----hhHHHHHHHHHhcCCCcCcccE
Confidence            345699999999999999999999999999999999999999999886522110    4679999999999999999999


Q ss_pred             eeEEEeCC-eEEEEEEccCCCChhhhccCCc
Q 040605          192 YGFCSHAR-HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       192 ~g~~~~~~-~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +|||.+.+ +.+||||||+||+|.++|+...
T Consensus       137 lGyC~e~~~~~~LVYEym~nGsL~d~L~~~~  167 (361)
T KOG1187|consen  137 LGYCLEGGEHRLLVYEYMPNGSLEDHLHGKK  167 (361)
T ss_pred             EEEEecCCceEEEEEEccCCCCHHHHhCCCC
Confidence            99999988 5999999999999999999765

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.81  E-value=8.3e-20  Score=152.20  Aligned_cols=104  Identities=23%  Similarity=0.407  Sum_probs=86.5

Q ss_pred             cccHHHHHHHhc---------CccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHh
Q 040605          115 KFIYVEIIRAKN---------DFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT  181 (226)
Q Consensus       115 ~~~~~~l~~~~~---------~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~  181 (226)
                      .++|+|-.+|..         ....+++||.|.||.||+|.++    ....||||.|+..   ...+...+|+.|+.+|+
T Consensus       609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~G---ytekqrrdFL~EAsIMG  685 (996)
T KOG0196|consen  609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAG---YTEKQRRDFLSEASIMG  685 (996)
T ss_pred             CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccC---ccHHHHhhhhhhhhhcc
Confidence            456665544433         3456789999999999999874    3458999999753   23346789999999999


Q ss_pred             cCCCCcccceeeEEEeCCeEEEEEEccCCCChhhhccCCc
Q 040605          182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       182 ~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++.||||++|.|+.......|||+|||+||+|+.||+.+.
T Consensus       686 QFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~D  725 (996)
T KOG0196|consen  686 QFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQND  725 (996)
T ss_pred             cCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcC
Confidence            9999999999999999999999999999999999999764

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.2e-19  Score=150.97  Aligned_cols=95  Identities=28%  Similarity=0.524  Sum_probs=80.3

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .+......||+|.||.||+|..      .+.+.||||.++..   .+.+..++|.+|+++|+.++|||||+|+|.|..++
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~---a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~  562 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK---AENQARQDFRREAELLAELQHPNIVRLLGVCREGD  562 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc---ccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC
Confidence            3444556799999999999965      24568999999752   23336789999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCccc
Q 040605          200 HSFLVYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~~~  223 (226)
                      +.++|+|||.+|||.+||+-..+.
T Consensus       563 P~~MvFEYm~~GDL~eFLra~sP~  586 (774)
T KOG1026|consen  563 PLCMVFEYMDHGDLHEFLRARSPK  586 (774)
T ss_pred             eeEEEEEecccccHHHHHHhhCCc
Confidence            999999999999999999866554

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.79  E-value=5.1e-19  Score=137.85  Aligned_cols=95  Identities=26%  Similarity=0.399  Sum_probs=81.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|.....||+|.|++||+|..+ ++..||||.+.. .. -..+..+....|+.+|+.++|||||.++.+++.++..++|
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~-~~-l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAK-KK-LNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehh-hc-cCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            45666677999999999999775 789999999965 11 1233556789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      ||||.+|||.+||+..+.
T Consensus        88 MEyC~gGDLs~yi~~~~~  105 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRGR  105 (429)
T ss_pred             EEeCCCCCHHHHHHHcCC
Confidence            999999999999997743

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.74  E-value=9.8e-18  Score=136.16  Aligned_cols=92  Identities=30%  Similarity=0.478  Sum_probs=81.1

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      .....+.||+|.||.|..|....+..||||+++....   ....++|.+|+++|.+++||||++|+|+|..+++.++++|
T Consensus       539 ~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~---~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  539 RLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT---KNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             heehhhhhcCcccceeEEEEecCceEEEEeecCcccc---hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence            3445568999999999999998889999999986322   2256899999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      ||++|+|.+||..+.
T Consensus       616 YmEnGDLnqFl~ahe  630 (807)
T KOG1094|consen  616 YMENGDLNQFLSAHE  630 (807)
T ss_pred             HHhcCcHHHHHHhcc
Confidence            999999999998763

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=3.1e-17  Score=131.77  Aligned_cols=86  Identities=29%  Similarity=0.552  Sum_probs=76.6

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      ...+.||+|.||.|+.|.+.....||+|.++..  .   ...++|.+|+.+|.+++|+|||+++|+|..++.++||||||
T Consensus       209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~--~---m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m  283 (468)
T KOG0197|consen  209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG--S---MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYM  283 (468)
T ss_pred             HHHHHhcCCccceEEEEEEcCCCcccceEEecc--c---cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEec
Confidence            334569999999999999977779999999752  1   13578999999999999999999999999989999999999


Q ss_pred             CCCChhhhccC
Q 040605          209 ERGSLATNLSN  219 (226)
Q Consensus       209 ~~g~L~~~l~~  219 (226)
                      ++|+|.+||+.
T Consensus       284 ~~GsLl~yLr~  294 (468)
T KOG0197|consen  284 PKGSLLDYLRT  294 (468)
T ss_pred             ccCcHHHHhhh
Confidence            99999999997

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.70  E-value=6.1e-17  Score=129.23  Aligned_cols=87  Identities=36%  Similarity=0.612  Sum_probs=74.1

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-eEEEEEEccCC
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-HSFLVYEYLER  210 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-~~~lv~e~~~~  210 (226)
                      ..+|+|+||+||+|.+.....||||.+... ..... ..++|.+|+.+|.+++|||||+++|+|..+. ..+||||||++
T Consensus        47 ~~iG~G~~g~V~~~~~~g~~~vavK~~~~~-~~~~~-~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~  124 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKWRGTDVVAVKIISDP-DFDDE-SRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPG  124 (362)
T ss_pred             hhcccCCceeEEEEEeCCceeEEEEEecch-hcChH-HHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCC
Confidence            459999999999999954444999999762 22222 2679999999999999999999999999887 79999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.++|+..
T Consensus       125 GsL~~~l~~~  134 (362)
T KOG0192|consen  125 GSLSVLLHKK  134 (362)
T ss_pred             CcHHHHHhhc
Confidence            9999999873

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.69  E-value=7.3e-17  Score=131.17  Aligned_cols=97  Identities=29%  Similarity=0.459  Sum_probs=80.9

Q ss_pred             HhcCccccceeccCCceeEEEEEcCC--C---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELPS--G---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~~--g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      ..++....+.||+|.||.||+|.+..  +   ..||||..+. ..........+|++|+++|++++|||||+++|++...
T Consensus       155 ~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~-~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~  233 (474)
T KOG0194|consen  155 SHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG-SSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLE  233 (474)
T ss_pred             eccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecc-cccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC
Confidence            34555666889999999999997753  2   2389998874 2223344678999999999999999999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .+.+||||+|++|+|.+||+...
T Consensus       234 ~Pl~ivmEl~~gGsL~~~L~k~~  256 (474)
T KOG0194|consen  234 EPLMLVMELCNGGSLDDYLKKNK  256 (474)
T ss_pred             CccEEEEEecCCCcHHHHHHhCC
Confidence            99999999999999999999764

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.9e-16  Score=137.82  Aligned_cols=95  Identities=27%  Similarity=0.502  Sum_probs=81.3

Q ss_pred             cCccccceeccCCceeEEEEEcC--CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .+....+.||+|.||.||+|.+.  +|.    .||||.+...   .+.+...+|++|..+|++++|||||+++|+|.+..
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~---~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~  768 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL---SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG  768 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc---CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC
Confidence            44566789999999999999774  333    4899998652   33446789999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCccc
Q 040605          200 HSFLVYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~~~  223 (226)
                      ..+|++|||++|||..||++.++.
T Consensus       769 ~~~i~leyM~gGDL~sflr~~r~~  792 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLRESRPA  792 (1025)
T ss_pred             CcEEEehhcccCcHHHHHHhcccc
Confidence            999999999999999999987653

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.64  E-value=3.4e-15  Score=118.67  Aligned_cols=85  Identities=31%  Similarity=0.526  Sum_probs=70.4

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHh--cCCCCcccceeeEEEeCC----eE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT--KIRHRNIVKFYGFCSHAR----HS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~--~l~h~nlv~l~g~~~~~~----~~  201 (226)
                      +....++|+|+||.||||.+ +++.||||.+..       +..+.|.+|-++..  .++|+||++++++-....    +.
T Consensus       212 l~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~-------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  212 LQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPE-------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEY  283 (534)
T ss_pred             hhhHHHhhcCccceeehhhc-cCceeEEEecCH-------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccce
Confidence            34445799999999999999 569999999864       24578888888766  468999999999875544    78


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      +||+||.++|+|.+||..+
T Consensus       284 wLVt~fh~kGsL~dyL~~n  302 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKAN  302 (534)
T ss_pred             eEEeeeccCCcHHHHHHhc
Confidence            9999999999999999765

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=6.7e-16  Score=121.87  Aligned_cols=90  Identities=31%  Similarity=0.495  Sum_probs=74.3

Q ss_pred             HHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc--CCCCcccceeeEEEeC--
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK--IRHRNIVKFYGFCSHA--  198 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~--l~h~nlv~l~g~~~~~--  198 (226)
                      .....+...+.||+|.||.||+|.+ .|+.||||.+...       +.++|.+|.++...  +||+||+.+++.-..+  
T Consensus       208 TiarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~sr-------dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~g  279 (513)
T KOG2052|consen  208 TIARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSR-------DERSWFRETEIYQTVMLRHENILGFIAADNKDNG  279 (513)
T ss_pred             hhhheeEEEEEecCccccceeeccc-cCCceEEEEeccc-------chhhhhhHHHHHHHHHhccchhhhhhhccccCCC
Confidence            3345677888999999999999998 6899999998641       34678888888775  5999999999876544  


Q ss_pred             --CeEEEEEEccCCCChhhhccCC
Q 040605          199 --RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 --~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                        .+.+||+||.++|||+|||...
T Consensus       280 s~TQLwLvTdYHe~GSL~DyL~r~  303 (513)
T KOG2052|consen  280 SWTQLWLVTDYHEHGSLYDYLNRN  303 (513)
T ss_pred             ceEEEEEeeecccCCcHHHHHhhc
Confidence              3689999999999999999864

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=1.8e-15  Score=118.47  Aligned_cols=95  Identities=28%  Similarity=0.426  Sum_probs=77.2

Q ss_pred             CccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCC-c--hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGD-Q--IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~-~--~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      .|...+.||+|+||.|-.+. -++|..||||.++...... .  ........+|+++|.+++|||||++.+++..++..|
T Consensus       173 ~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~Y  252 (475)
T KOG0615|consen  173 YYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSY  252 (475)
T ss_pred             eeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceE
Confidence            45567789999999999994 4589999999996521111 1  112334679999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      ||+|||++|+|.+.+-.+.
T Consensus       253 mVlE~v~GGeLfd~vv~nk  271 (475)
T KOG0615|consen  253 MVLEYVEGGELFDKVVANK  271 (475)
T ss_pred             EEEEEecCccHHHHHHhcc
Confidence            9999999999999886544

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.2e-15  Score=123.00  Aligned_cols=97  Identities=29%  Similarity=0.462  Sum_probs=83.8

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|...+.||+|+|+++|+++. ..|..+|+|++.+ .........+...+|+++.+.++|||||++++++++.+..|||.
T Consensus        19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk-~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPK-KLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeeh-HHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            477788999999999999976 7999999999975 22223345788999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCcccc
Q 040605          206 EYLERGSLATNLSNDAAAE  224 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~~~~  224 (226)
                      |+|++|+|..+++...+..
T Consensus        98 ELC~~~sL~el~Krrk~lt  116 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLT  116 (592)
T ss_pred             EecCCccHHHHHHhcCCCC
Confidence            9999999999998555443

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.62  E-value=2.8e-16  Score=132.19  Aligned_cols=91  Identities=24%  Similarity=0.415  Sum_probs=75.7

Q ss_pred             ccccceeccCCceeEEEEEc-CCCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ...+++||+|.||+||+|.+ ++|+    +||+|++...   ...+...+++.|+-.|++++||||++|+|+|.... ..
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~---t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF---TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeecc---CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            34557899999999999955 5554    7899998642   22235689999999999999999999999998666 88


Q ss_pred             EEEEccCCCChhhhccCCcc
Q 040605          203 LVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~~  222 (226)
                      ||++|||.|+|.+|++.++.
T Consensus       774 lvtq~mP~G~LlDyvr~hr~  793 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHRD  793 (1177)
T ss_pred             HHHHhcccchHHHHHHHhhc
Confidence            99999999999999997654

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.60  E-value=5.1e-16  Score=127.50  Aligned_cols=99  Identities=25%  Similarity=0.439  Sum_probs=84.5

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      +++.....++.-.+.||-|.||.||.|.++ -...||||.++.     +....++|+.|+.+|..|+|||+|+|+|+|..
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE-----DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~  334 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-----DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH  334 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhh-----cchhHHHHHHHHHHHHhhcCccHHHHhhhhcc
Confidence            334334455677788999999999999886 567899999975     22357899999999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCCcc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +...|||+|||.+|+|.+||++.+.
T Consensus       335 EpPFYIiTEfM~yGNLLdYLRecnr  359 (1157)
T KOG4278|consen  335 EPPFYIITEFMCYGNLLDYLRECNR  359 (1157)
T ss_pred             CCCeEEEEecccCccHHHHHHHhch
Confidence            9999999999999999999997653

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.3e-15  Score=110.12  Aligned_cols=94  Identities=29%  Similarity=0.490  Sum_probs=80.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|..++.||+|.||.||.+..+ ++..||+|++.+ .......-.+.+.+|+++-+.++||||++++|++.+....|++
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfK-sqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFK-SQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeH-HHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            56888899999999999999765 678999999865 2222222457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||.++|+|...|++.
T Consensus       101 lEya~~gel~k~L~~~  116 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEG  116 (281)
T ss_pred             EEecCCchHHHHHHhc
Confidence            9999999999999843

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.4e-14  Score=116.16  Aligned_cols=92  Identities=30%  Similarity=0.479  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~  202 (226)
                      +.|.....||+|.||.||+++ ..+|..||+|+++.+..  +.....-..+|+.+|++++||||++|.+...+.  ...|
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~--~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY  194 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNE--KEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY  194 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccC--CCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence            446666789999999999995 56899999999976321  222456678999999999999999999999876  6899


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      ||+|||++ ||.-++...
T Consensus       195 lVFeYMdh-DL~GLl~~p  211 (560)
T KOG0600|consen  195 LVFEYMDH-DLSGLLSSP  211 (560)
T ss_pred             EEEecccc-hhhhhhcCC
Confidence            99999996 888887754

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.54  E-value=2.6e-14  Score=116.80  Aligned_cols=93  Identities=22%  Similarity=0.408  Sum_probs=77.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||+|...      .+..||||+++....   ....+.|.+|+.++.++. ||||++++++|..
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~  112 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR---SSEKQALMSELKIMTHLGPHLNIVNLLGACTK  112 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEcc
Confidence            456777889999999999999642      234799999865221   224568999999999995 9999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++|+..
T Consensus       113 ~~~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         113 SGPIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             CCceEEEEEecCCCcHHHHHHHh
Confidence            99999999999999999999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.52  E-value=7.9e-15  Score=115.10  Aligned_cols=95  Identities=23%  Similarity=0.334  Sum_probs=81.5

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|.||.|-++.- ..|+.||||.+++ ....+.++.-...+|+++|+.++||||++++.++...+.+.||||
T Consensus        55 yE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrK-dkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   55 YEITETLGKGTYGKVKLAYEHKSGREVAIKSIRK-DKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHhcCCcccceeehhhccCCcEeehhhhhh-hhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            44445799999999999954 6899999999987 344444566678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCccc
Q 040605          207 YLERGSLATNLSNDAAA  223 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~~~  223 (226)
                      |..+|.|.+|+.+.+..
T Consensus       134 YaS~GeLYDYiSer~~L  150 (668)
T KOG0611|consen  134 YASGGELYDYISERGSL  150 (668)
T ss_pred             ecCCccHHHHHHHhccc
Confidence            99999999999876654

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.51  E-value=3.9e-14  Score=115.11  Aligned_cols=93  Identities=24%  Similarity=0.435  Sum_probs=77.5

Q ss_pred             hcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||++..      .++..||||.++....   ....+.+.+|+.++..+ +||||++++++|..
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~  110 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHINIVNLLGACTV  110 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC---cHHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence            34577788999999999999953      2456899999864211   12356789999999999 89999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++|+..
T Consensus       111 ~~~~~lv~E~~~~g~L~~~l~~~  133 (375)
T cd05104         111 GGPTLVITEYCCYGDLLNFLRRK  133 (375)
T ss_pred             CCcceeeehhccCCcHHHHHHhc
Confidence            99999999999999999999754

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.51  E-value=7.8e-14  Score=113.58  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|...+.||+|+||+||++.. .++..+|+|.+... ..........+.+|+.++.+++|+||+++++++...+..++||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~-~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKK-DVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHH-HhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEE
Confidence            466778899999999999965 47889999998641 1111223567899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++....
T Consensus        81 E~~~gg~L~~~l~~~~   96 (381)
T cd05626          81 DYIPGGDMMSLLIRME   96 (381)
T ss_pred             ecCCCCcHHHHHHhcC
Confidence            9999999999987543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.51  E-value=7e-14  Score=108.28  Aligned_cols=92  Identities=23%  Similarity=0.396  Sum_probs=77.4

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|.+.    .+..+|+|.++...   .......|.+|+..+.+++|||++++.|++...+..
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   81 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC---SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTM   81 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC---CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCc
Confidence            45677788999999999999653    45689999986521   122356799999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~  100 (266)
T cd05064          82 MIVTEYMSNGALDSFLRKH  100 (266)
T ss_pred             EEEEEeCCCCcHHHHHHhC
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.50  E-value=6.4e-14  Score=108.47  Aligned_cols=87  Identities=31%  Similarity=0.412  Sum_probs=75.4

Q ss_pred             ccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-eEEEEEEc
Q 040605          130 AKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-HSFLVYEY  207 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-~~~lv~e~  207 (226)
                      ..+.||+|..|+||++..+ ++..+|+|.+...   .+....++..+|++++.+.+||+||.++|.+.... +..|+|||
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~---~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN---IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            3457999999999999775 7889999999542   22335688999999999999999999999999988 59999999


Q ss_pred             cCCCChhhhccC
Q 040605          208 LERGSLATNLSN  219 (226)
Q Consensus       208 ~~~g~L~~~l~~  219 (226)
                      |++|+|++++..
T Consensus       160 MDgGSLd~~~k~  171 (364)
T KOG0581|consen  160 MDGGSLDDILKR  171 (364)
T ss_pred             cCCCCHHHHHhh
Confidence            999999999874

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=8e-14  Score=113.35  Aligned_cols=94  Identities=24%  Similarity=0.310  Sum_probs=78.2

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++.. .++..+|+|++... ........+.+.+|++++.+++||||+++++++...+..++||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKS-EMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHH-HHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            577778999999999999965 47899999998541 1111223467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++...+
T Consensus        81 E~~~gg~L~~~l~~~~   96 (377)
T cd05629          81 EFLPGGDLMTMLIKYD   96 (377)
T ss_pred             eCCCCCcHHHHHHhcC
Confidence            9999999999987543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=6.6e-14  Score=113.28  Aligned_cols=95  Identities=25%  Similarity=0.360  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||||.+... ..........+.+|+.++..++|+||+++++++...+..++|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv   79 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKS-EMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLI   79 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEE
Confidence            35777889999999999999764 7899999998641 111112346688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.++++...
T Consensus        80 ~E~~~~g~L~~~l~~~~   96 (364)
T cd05599          80 MEYLPGGDMMTLLMKKD   96 (364)
T ss_pred             ECCCCCcHHHHHHHHcC
Confidence            99999999999987644

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.50  E-value=1.7e-14  Score=117.27  Aligned_cols=93  Identities=27%  Similarity=0.400  Sum_probs=79.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|.....||+|+||.||||+.+ +.+.||+|.+.+ ... ..+..+...+|++++++++|||||.++.++++..+.++|+
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K-~gr-~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDK-SGR-NEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehh-cCC-chHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            4555667999999999999765 788999999976 222 2335788999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCcc
Q 040605          206 EYLERGSLATNLSNDAA  222 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~~  222 (226)
                      ||+. |+|+.+|.....
T Consensus        81 e~a~-g~L~~il~~d~~   96 (808)
T KOG0597|consen   81 EYAV-GDLFTILEQDGK   96 (808)
T ss_pred             hhhh-hhHHHHHHhccC
Confidence            9998 499999986543

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=5.5e-14  Score=110.32  Aligned_cols=94  Identities=21%  Similarity=0.354  Sum_probs=78.5

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|+.++.+++||||+++.+++...+..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIP-EVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHH-HHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            5677788999999999999765 7899999998641 1111223467889999999999999999999999899999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++..+
T Consensus        81 e~~~~~~L~~~~~~~~   96 (291)
T cd05612          81 EYVPGGELFSYLRNSG   96 (291)
T ss_pred             eCCCCCCHHHHHHHcC
Confidence            9999999999987654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.49  E-value=9.3e-14  Score=110.95  Aligned_cols=95  Identities=22%  Similarity=0.357  Sum_probs=79.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +++.+|+|.+... ........+.+.+|+.++.+++||||+++++++...+..+++
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKR-EILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHH-HHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            45777889999999999999775 6889999998641 111112346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++++..
T Consensus        97 ~e~~~~~~L~~~l~~~~  113 (329)
T PTZ00263         97 LEFVVGGELFTHLRKAG  113 (329)
T ss_pred             EcCCCCChHHHHHHHcC
Confidence            99999999999987643

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=1.3e-13  Score=110.29  Aligned_cols=94  Identities=28%  Similarity=0.424  Sum_probs=78.9

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..||+|++.... .......+.+.+|+.++..++||||+++++++...+..++||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSL-LFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHH-HhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            5777789999999999999775 68899999986411 111223567889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++...
T Consensus        81 e~~~g~~L~~~l~~~~   96 (333)
T cd05600          81 EYVPGGDFRTLLNNLG   96 (333)
T ss_pred             eCCCCCCHHHHHHHcC
Confidence            9999999999997543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.49  E-value=1e-13  Score=113.42  Aligned_cols=93  Identities=24%  Similarity=0.454  Sum_probs=77.0

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~  198 (226)
                      +++...+.||+|+||.||++...      .+..||+|+++.... .  ...+.+.+|+.++.++. ||||++++|+|...
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~-~--~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~  113 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR-S--SEKQALMSELKIMSHLGPHLNIVNLLGACTKG  113 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC-h--hHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC
Confidence            45666778999999999999753      346899999975221 1  13457999999999997 99999999999998


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..++|+||+++|+|.++|+..+
T Consensus       114 ~~~~iv~E~~~~g~L~~~l~~~~  136 (401)
T cd05107         114 GPIYIITEYCRYGDLVDYLHRNK  136 (401)
T ss_pred             CCcEEEEeccCCCcHHHHHHhcc
Confidence            99999999999999999998643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>PHA02988 hypothetical protein; Provisional

Probab=99.49  E-value=2.8e-13  Score=105.93  Aligned_cols=89  Identities=25%  Similarity=0.349  Sum_probs=73.9

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCeEEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARHSFLVYE  206 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~~~lv~e  206 (226)
                      ...+++|+++.||+|.+ +|..||||.++.. ........+.|.+|+.+|.+++||||++++|++..    ....++|||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKF-HKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEecccc-ccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            35799999999999988 7899999998752 22222235778899999999999999999999876    346789999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      |+++|+|.++++..+
T Consensus       103 y~~~g~L~~~l~~~~  117 (283)
T PHA02988        103 YCTRGYLREVLDKEK  117 (283)
T ss_pred             eCCCCcHHHHHhhCC
Confidence            999999999998654

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.48  E-value=7.1e-14  Score=108.15  Aligned_cols=98  Identities=27%  Similarity=0.392  Sum_probs=83.6

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...++||+|+||+||..+- .+++.+|+|++++ ...-.....+...+|..+|.+++||.||.++-.+.+++..|+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K-~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKK-KKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhh-hHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            36788999999999999999955 4788999999976 222222346778899999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCccc
Q 040605          204 VYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~~~  223 (226)
                      |+||+.||+|..+|.+++..
T Consensus       103 Vld~~~GGeLf~hL~~eg~F  122 (357)
T KOG0598|consen  103 VLDYLNGGELFYHLQREGRF  122 (357)
T ss_pred             EEeccCCccHHHHHHhcCCc
Confidence            99999999999999876654

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.48  E-value=2e-13  Score=107.73  Aligned_cols=91  Identities=26%  Similarity=0.466  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-----------------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcc
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-----------------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI  188 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-----------------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl  188 (226)
                      .+|...+.||+|+||.||++...                 ++..||+|.+....   .......|.+|+.++.+++||||
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA---NKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC---CHHHHHHHHHHHHHHhhcCCCCe
Confidence            45667788999999999999643                 23479999986521   12245679999999999999999


Q ss_pred             cceeeEEEeCCeEEEEEEccCCCChhhhccC
Q 040605          189 VKFYGFCSHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       189 v~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +++++++...+..+++|||+++|+|.++|..
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  112 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSS  112 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHh
Confidence            9999999998999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.48  E-value=8.9e-14  Score=107.34  Aligned_cols=87  Identities=43%  Similarity=0.681  Sum_probs=71.9

Q ss_pred             cceeccCCceeEEEEEcC-----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .+.||+|.||.||+|.+.     .+..|+||.+..   .......+.|.+|++.+.+++||||++++|+|...+..++|+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~---~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKP---SSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEEST---TSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEE
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecc---ccccccceeeeecccccccccccccccccccccccccccccc
Confidence            467999999999999775     356899999954   122234689999999999999999999999999888899999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++|+..
T Consensus        81 e~~~~g~L~~~L~~~   95 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSK   95 (259)
T ss_dssp             E--TTEBHHHHHHHT
T ss_pred             ccccccccccccccc
Confidence            999999999999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.48  E-value=1.8e-13  Score=111.47  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|...+.||+|+||.||++.. .++..+|+|.+... ..........+.+|+.++.+++|+||+++++.+...+..++||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~-~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKK-DVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHH-HhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence            467778999999999999965 47889999998641 1111223467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++...+
T Consensus        81 E~~~gg~L~~~l~~~~   96 (382)
T cd05625          81 DYIPGGDMMSLLIRMG   96 (382)
T ss_pred             eCCCCCcHHHHHHhcC
Confidence            9999999999987543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.47  E-value=9.9e-14  Score=103.15  Aligned_cols=91  Identities=26%  Similarity=0.439  Sum_probs=76.6

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.+|+|.||.||+|.. .+|+.||||+++.....+  .......+|+..|+.++|+||+.+++++...+...||+|
T Consensus         4 Y~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd--Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    4 YEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD--GINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             hhhhhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc--CccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            44556799999999999954 589999999998632222  134678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      ||+ -||+..|++..
T Consensus        82 fm~-tdLe~vIkd~~   95 (318)
T KOG0659|consen   82 FMP-TDLEVVIKDKN   95 (318)
T ss_pred             ecc-ccHHHHhcccc
Confidence            998 68999998653

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.47  E-value=1.5e-13  Score=110.98  Aligned_cols=98  Identities=26%  Similarity=0.331  Sum_probs=84.6

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|....+||+|+||.||.++- .+|..+|+|+|++ +.............|-.+|....+++||+|+-.+.+.+..||
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK-S~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK-SEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccH-HHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            46899999999999999999965 4799999999987 333333456788999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCccc
Q 040605          204 VYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~~~  223 (226)
                      ||||+|+||+..+|...+..
T Consensus       219 iMEylPGGD~mTLL~~~~~L  238 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTL  238 (550)
T ss_pred             EEEecCCccHHHHHHhcCcC
Confidence            99999999999998866544

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.47  E-value=3e-13  Score=108.22  Aligned_cols=93  Identities=27%  Similarity=0.406  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+....   .......+.+|++++..++|+||+++++++...+..++|
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEE
Confidence            56777889999999999999765 68889999886421   112346799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.++++...
T Consensus        82 ~e~~~~~~L~~~l~~~~   98 (333)
T cd06650          82 MEHMDGGSLDQVLKKAG   98 (333)
T ss_pred             EecCCCCcHHHHHHHcC
Confidence            99999999999987543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.47  E-value=1.1e-13  Score=110.94  Aligned_cols=93  Identities=24%  Similarity=0.454  Sum_probs=75.5

Q ss_pred             hcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||++..      .++..||+|.+....   .....+.+.+|+.++..+ +||||++++++|..
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA---TASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc---chHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            35677788999999999999963      245689999986421   122356799999999999 89999999999876


Q ss_pred             CC-eEEEEEEccCCCChhhhccCC
Q 040605          198 AR-HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~-~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+ ..+++|||+++|+|.++|+..
T Consensus        83 ~~~~~~lv~ey~~~g~L~~~l~~~  106 (338)
T cd05102          83 PNGPLMVIVEFCKYGNLSNFLRAK  106 (338)
T ss_pred             CCCceEEEEecCCCCcHHHHHHhc
Confidence            54 578999999999999999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.47  E-value=1.9e-13  Score=109.64  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=77.7

Q ss_pred             cCccccceeccCCceeEEEEEcCC--CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS--GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~--g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++....  +..+|+|.+... ..........+.+|+.++..++||||+++++++...+..++
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKS-KIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHH-HhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            457778899999999999997542  368999998541 11111234678899999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.+++....
T Consensus       109 v~Ey~~~g~L~~~i~~~~  126 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK  126 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC
Confidence            999999999999997643

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.46  E-value=2.3e-13  Score=110.16  Aligned_cols=95  Identities=22%  Similarity=0.304  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++... ++..+|+|.++.. ..........+..|+.++.+++|+||+++++.+......++|
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv   79 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKA-DMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLI   79 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHH-HHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEE
Confidence            35777889999999999999654 6889999998641 111122345788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus        80 ~E~~~gg~L~~~l~~~~   96 (363)
T cd05628          80 MEFLPGGDMMTLLMKKD   96 (363)
T ss_pred             EcCCCCCcHHHHHHhcC
Confidence            99999999999997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.46  E-value=2.7e-13  Score=110.19  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=78.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+... ..........+.+|++++.+++|+||+++++.+...+..++||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKA-DVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHH-HHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            5777889999999999999654 6889999998541 1111113466889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++|...+
T Consensus        81 E~~~~g~L~~~i~~~~   96 (376)
T cd05598          81 DYIPGGDMMSLLIRLG   96 (376)
T ss_pred             eCCCCCcHHHHHHhcC
Confidence            9999999999987644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.46  E-value=4e-13  Score=107.41  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..+|+|.+....   .......+.+|++++.+++|+||+++++++...+..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            56788889999999999999765 68899999986421   122456799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++....
T Consensus        82 ~e~~~~~~L~~~l~~~~   98 (331)
T cd06649          82 MEHMDGGSLDQVLKEAK   98 (331)
T ss_pred             eecCCCCcHHHHHHHcC
Confidence            99999999999987543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.46  E-value=4.1e-13  Score=103.29  Aligned_cols=90  Identities=22%  Similarity=0.466  Sum_probs=77.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..+|+|.+.. ...    ....|.+|+.++++++|||++++++++...+..+++|
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~-~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~   78 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINE-GAM----SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT   78 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEeccc-CCc----cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence            34666778999999999999888888999998754 111    2467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        79 e~~~~~~L~~~~~~~   93 (256)
T cd05114          79 EFMENGCLLNYLRQR   93 (256)
T ss_pred             EcCCCCcHHHHHHhC
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.45  E-value=4.3e-13  Score=103.84  Aligned_cols=95  Identities=23%  Similarity=0.283  Sum_probs=80.3

Q ss_pred             HHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          122 IRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       122 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ..+++++.....||+|+||.||++... ++..+++|.+...    .....+.+.+|+.+++.++|+||+++++++...+.
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER----DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF   79 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC----CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE
Confidence            345566777778999999999999754 6788999988641    12245789999999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++++|.++++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~   99 (268)
T cd06624          80 FKIFMEQVPGGSLSALLRSK   99 (268)
T ss_pred             EEEEEecCCCCCHHHHHHHh
Confidence            99999999999999999754

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.3e-15  Score=111.88  Aligned_cols=91  Identities=27%  Similarity=0.456  Sum_probs=75.5

Q ss_pred             CccccceeccCCceeEEEE-EcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeE-EEeCCe-EEE
Q 040605          127 DFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGF-CSHARH-SFL  203 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~-~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~-~~~~~~-~~l  203 (226)
                      +|...+.||+|.||.|||+ .+.+|..+|.|.++-  ..-+.+..+....|+.+|++++|||||+..+. +.+..+ ..|
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f--~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlni   97 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQF--GMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNI   97 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcch--hhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHH
Confidence            3556678999999999999 457999999999974  33445567889999999999999999999883 344444 789


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      |||||+.|||.+.|+.
T Consensus        98 vmE~c~~GDLsqmIk~  113 (375)
T KOG0591|consen   98 VMELCDAGDLSQMIKH  113 (375)
T ss_pred             HHHhhcccCHHHHHHH
Confidence            9999999999999874

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.44  E-value=8.2e-14  Score=105.49  Aligned_cols=87  Identities=29%  Similarity=0.453  Sum_probs=72.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |.....+|+|++|.||+|+.+ +|+.||||++..  +.++..-.+-.++|++++++++|+|+|.|+.+|......++|+|
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~E--sedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVE--SEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeecc--CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            444567999999999999775 799999999965  22333345678899999999999999999999999999999999


Q ss_pred             ccCCCChhhh
Q 040605          207 YLERGSLATN  216 (226)
Q Consensus       207 ~~~~g~L~~~  216 (226)
                      ||++--|++.
T Consensus        82 ~~dhTvL~eL   91 (396)
T KOG0593|consen   82 YCDHTVLHEL   91 (396)
T ss_pred             ecchHHHHHH
Confidence            9987555544

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.43  E-value=7.9e-13  Score=104.62  Aligned_cols=91  Identities=27%  Similarity=0.358  Sum_probs=77.6

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+....   .......+.+|++++.+++||||+++++++...+..++++
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI---KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            5777889999999999999754 67889999886421   1223467899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        79 ey~~~~~L~~~l~~~   93 (308)
T cd06615          79 EHMDGGSLDQVLKKA   93 (308)
T ss_pred             eccCCCcHHHHHHhc
Confidence            999999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.43  E-value=8.2e-13  Score=102.17  Aligned_cols=92  Identities=25%  Similarity=0.435  Sum_probs=77.6

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|...    +...+|+|.++...   .......|.+|+..+.+++|+||+++.+.+...+..
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS---SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC---ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            46778889999999999999764    24579999886421   222456899999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      +++|||+++|+|.++++..
T Consensus        81 ~iv~e~~~~~~L~~~~~~~   99 (266)
T cd05033          81 MIITEYMENGSLDKFLREN   99 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhc
Confidence            9999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.43  E-value=6.2e-13  Score=105.93  Aligned_cols=88  Identities=22%  Similarity=0.272  Sum_probs=73.4

Q ss_pred             eeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .||+|+||.||++.. .+|..+|+|.++... .........+.+|+.++.+++||||+++.+++...+..++||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKILKKEV-IIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHH-hhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            689999999999966 478999999986411 111123457889999999999999999999999999999999999999


Q ss_pred             ChhhhccCCc
Q 040605          212 SLATNLSNDA  221 (226)
Q Consensus       212 ~L~~~l~~~~  221 (226)
                      +|.+++...+
T Consensus        81 ~L~~~l~~~~   90 (323)
T cd05571          81 ELFFHLSRER   90 (323)
T ss_pred             cHHHHHHHcC
Confidence            9999987544

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=6.6e-13  Score=103.89  Aligned_cols=91  Identities=23%  Similarity=0.327  Sum_probs=75.2

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++.. .++..||+|.+... ..........+.+|+.++++++|+|++++.+++...+..++|||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehh-hhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            55667899999999999975 47899999998641 11111223567889999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++|+|.++++.
T Consensus        81 ~~~~~~L~~~~~~   93 (285)
T cd05605          81 LMNGGDLKFHIYN   93 (285)
T ss_pred             ccCCCcHHHHHHh
Confidence            9999999998864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.43  E-value=4.2e-13  Score=108.84  Aligned_cols=97  Identities=22%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             HHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ...++|...+.||+|+||.||++... ++..+|+|.+... ..........+..|+.++..++||||+++.+++..++..
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKF-EMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHH-HhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            33467888889999999999999765 6789999998541 111112345688999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~  137 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNY  137 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc
Confidence            9999999999999998754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.43  E-value=3e-13  Score=109.89  Aligned_cols=93  Identities=24%  Similarity=0.456  Sum_probs=77.1

Q ss_pred             hcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||++..      .++..||+|.++....   ......+.+|+.+++.+ +|+||++++++|..
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---TDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---HHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            35677888999999999999863      2345899999865211   12346788999999999 89999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++|+..
T Consensus       114 ~~~~~lv~ey~~~g~L~~~l~~~  136 (374)
T cd05106         114 GGPVLVITEYCCYGDLLNFLRKK  136 (374)
T ss_pred             CCCeEEeHhhccCCcHHHHHHhh
Confidence            99999999999999999999754

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.43  E-value=6.4e-13  Score=107.39  Aligned_cols=94  Identities=23%  Similarity=0.335  Sum_probs=78.4

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.++.. ..........+..|+.++..++|+|++++++.+...+..++||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKA-DMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHH-HHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5777789999999999999764 6889999998641 1111123467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++...+
T Consensus        81 E~~~gg~L~~~l~~~~   96 (360)
T cd05627          81 EFLPGGDMMTLLMKKD   96 (360)
T ss_pred             eCCCCccHHHHHHhcC
Confidence            9999999999997654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.43  E-value=6.9e-13  Score=105.69  Aligned_cols=88  Identities=20%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             eeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .||+|+||.||++.. .+|..||+|.+..... ........+.+|+.++..++|||++++.+++...+..++||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKILRKEVI-IAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-hhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            689999999999975 4789999999864211 11123467789999999999999999999999999999999999999


Q ss_pred             ChhhhccCCc
Q 040605          212 SLATNLSNDA  221 (226)
Q Consensus       212 ~L~~~l~~~~  221 (226)
                      +|.+++...+
T Consensus        81 ~L~~~l~~~~   90 (323)
T cd05595          81 ELFFHLSRER   90 (323)
T ss_pred             cHHHHHHHcC
Confidence            9999887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=6.4e-13  Score=105.32  Aligned_cols=87  Identities=21%  Similarity=0.288  Sum_probs=72.7

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||.||++... ++..+|+|.+... ..........+.+|+.++.+++||||+++.+++...+..++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKA-HIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            699999999999764 6789999998641 11112245678899999999999999999999999999999999999999


Q ss_pred             hhhhccCCc
Q 040605          213 LATNLSNDA  221 (226)
Q Consensus       213 L~~~l~~~~  221 (226)
                      |.+++...+
T Consensus        80 L~~~l~~~~   88 (312)
T cd05585          80 LFHHLQREG   88 (312)
T ss_pred             HHHHHHhcC
Confidence            999997543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.42  E-value=8.5e-13  Score=103.27  Aligned_cols=91  Identities=23%  Similarity=0.320  Sum_probs=75.2

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++.. .+|..+|+|.+... ..........+.+|+.++.+++|+|++++.+++...+..++++|
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHh-hhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            55667899999999999976 47899999998641 11111233568899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++|+|.+++..
T Consensus        81 ~~~~g~L~~~~~~   93 (285)
T cd05631          81 IMNGGDLKFHIYN   93 (285)
T ss_pred             ecCCCcHHHHHHh
Confidence            9999999988754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.42  E-value=5.6e-13  Score=108.14  Aligned_cols=95  Identities=24%  Similarity=0.311  Sum_probs=78.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++... ++..+|+|.+.. ...........+..|+.+++.++||||+++++++...+..++
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK-FEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH-HHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            456888889999999999999764 688999999864 111111234567899999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.++++..
T Consensus       121 v~Ey~~gg~L~~~l~~~  137 (370)
T cd05596         121 VMEYMPGGDLVNLMSNY  137 (370)
T ss_pred             EEcCCCCCcHHHHHHhc
Confidence            99999999999998754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=8.6e-13  Score=106.28  Aligned_cols=97  Identities=23%  Similarity=0.366  Sum_probs=78.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCC-CchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPG-DQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~-~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~  202 (226)
                      ..|...+.||+|.||+|+.+.. .++..||+|.+...... ......+...+|+.+++.++ ||||+++..++.++...+
T Consensus        17 g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~   96 (370)
T KOG0583|consen   17 GKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIY   96 (370)
T ss_pred             CceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEE
Confidence            5677788999999999999955 47899999976542111 11123455668999999998 999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCcc
Q 040605          203 LVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +||||+.+|+|.+++.+...
T Consensus        97 ivmEy~~gGdL~~~i~~~g~  116 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVNKGR  116 (370)
T ss_pred             EEEEecCCccHHHHHHHcCC
Confidence            99999999999999987443

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=7.9e-13  Score=105.69  Aligned_cols=92  Identities=26%  Similarity=0.334  Sum_probs=77.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+.. .........+.+..|..++..++|+||+++.+++...+..++||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNK-WEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH-HHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            5677789999999999999764 688999999863 11111123456889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++|+|.+++..
T Consensus        81 e~~~g~~L~~~l~~   94 (331)
T cd05597          81 DYYVGGDLLTLLSK   94 (331)
T ss_pred             ecCCCCcHHHHHHH
Confidence            99999999999965

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.42  E-value=1.2e-12  Score=104.62  Aligned_cols=88  Identities=23%  Similarity=0.290  Sum_probs=73.8

Q ss_pred             eeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .||+|+||.||++.. .+|..+|+|.+.... .........+.+|+.++..++||||+++.+++...+..++||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEV-IIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            689999999999965 478999999986521 111224567889999999999999999999999999999999999999


Q ss_pred             ChhhhccCCc
Q 040605          212 SLATNLSNDA  221 (226)
Q Consensus       212 ~L~~~l~~~~  221 (226)
                      +|.+++...+
T Consensus        81 ~L~~~l~~~~   90 (328)
T cd05593          81 ELFFHLSRER   90 (328)
T ss_pred             CHHHHHHhcC
Confidence            9999887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.41  E-value=6.6e-13  Score=102.36  Aligned_cols=93  Identities=25%  Similarity=0.538  Sum_probs=80.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      +..+|...+.||+|+||.||++...++..+++|.+...    .......+..|+.++..++|+|++++++++...+..++
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSD----DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYI   79 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEecccc----chhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEE
Confidence            34557777889999999999998888999999998652    11235678999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      +|||+++|+|.+++++.
T Consensus        80 v~e~~~~~~L~~~~~~~   96 (261)
T cd05148          80 ITELMEKGSLLAFLRSP   96 (261)
T ss_pred             EEeecccCCHHHHHhcC
Confidence            99999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.41  E-value=8.8e-13  Score=105.43  Aligned_cols=93  Identities=24%  Similarity=0.256  Sum_probs=77.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+... ..........+..|..++..++|+||+++.+++...+..++|
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv   79 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKW-EMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLV   79 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHH-HHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence            35777889999999999999765 6789999998541 111112345688899999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++++.
T Consensus        80 ~Ey~~gg~L~~~l~~   94 (331)
T cd05624          80 MDYYVGGDLLTLLSK   94 (331)
T ss_pred             EeCCCCCcHHHHHHH
Confidence            999999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.41  E-value=1.7e-12  Score=113.82  Aligned_cols=93  Identities=30%  Similarity=0.476  Sum_probs=79.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||+|... +|..||+|+++... .......+.|.+|++++++++|||++++++++...+..+++
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l-~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLV   80 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDL-SENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYT   80 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECccc-ccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEE
Confidence            35777789999999999999764 68999999986522 12222456799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++|..
T Consensus        81 MEY~eGGSL~~lL~s   95 (932)
T PRK13184         81 MPYIEGYTLKSLLKS   95 (932)
T ss_pred             EEcCCCCCHHHHHHH
Confidence            999999999999864

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.41  E-value=2.4e-12  Score=99.58  Aligned_cols=92  Identities=22%  Similarity=0.361  Sum_probs=78.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+.. ....+......+.+|+++++.++|||++++++++...+..+++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~-~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQI-FEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV   80 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeec-cccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEE
Confidence            45777889999999999999764 789999998864 2222233456789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhcc
Q 040605          205 YEYLERGSLATNLS  218 (226)
Q Consensus       205 ~e~~~~g~L~~~l~  218 (226)
                      +||+++|+|.+++.
T Consensus        81 ~e~~~~~~L~~~~~   94 (267)
T cd08228          81 LELADAGDLSQMIK   94 (267)
T ss_pred             EEecCCCcHHHHHH
Confidence            99999999998885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.40  E-value=7.4e-13  Score=107.47  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=82.5

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      .++....++|...+.||+|+||.||++... ++..+|+|.+... ........+.+..|+.++..++||||+++++++..
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~-~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKF-EMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHH-HhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            344455678999999999999999999765 6789999998531 11111234568899999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++++..
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~  137 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNY  137 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc
Confidence            99999999999999999998754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.40  E-value=1.3e-12  Score=107.20  Aligned_cols=95  Identities=22%  Similarity=0.320  Sum_probs=81.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|.....||+|.|+.|..+... ++..||+|.++++ . .+....+.+.+|+++|..++|||||+++.+..++...++|
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt-~-ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKT-Q-LNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhc-c-cChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            45677788999999999999664 7999999999762 2 2233456699999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      |||+.+|.+++||..+..
T Consensus       134 ~eya~~ge~~~yl~~~gr  151 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHGR  151 (596)
T ss_pred             EEeccCchhHHHHHhccc
Confidence            999999999999987653

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.40  E-value=2.1e-12  Score=99.77  Aligned_cols=94  Identities=22%  Similarity=0.421  Sum_probs=77.7

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCC--chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD--QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~--~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|+||.||++...++..+|+|.+.......  .......+.+|++.+.+++|+|++++.+++...+..++++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            45567899999999999988889999999886421111  1122356889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++.+..
T Consensus        82 e~~~~~~L~~~l~~~~   97 (265)
T cd06631          82 EFVPGGSISSILNRFG   97 (265)
T ss_pred             ecCCCCcHHHHHHhcC
Confidence            9999999999997643

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.40  E-value=2e-13  Score=113.58  Aligned_cols=88  Identities=32%  Similarity=0.523  Sum_probs=74.0

Q ss_pred             cceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC------eEEE
Q 040605          131 KYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR------HSFL  203 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~------~~~l  203 (226)
                      ...||+|+||.||+|+ -..|+.||||.......   ....+.+.+|+++|++++|+|||++.+.-.+..      ...+
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~---~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESS---LRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhcc---cchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            4569999999999997 45899999999876332   225678999999999999999999988765543      5789


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      +||||++|||...|.++.
T Consensus        95 vmEyC~gGsL~~~L~~PE  112 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPE  112 (732)
T ss_pred             EEeecCCCcHHHHhcCcc
Confidence            999999999999998754

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.40  E-value=1.4e-12  Score=105.21  Aligned_cols=94  Identities=22%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~l  203 (226)
                      ..|...+.||+|.||.||++..+ +|..+|+|.+.+..... ..+...+.+|+.+|.++. |||+|.+.+.+.+....++
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~-~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRG-KEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccc-cccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            34566678999999999999776 59999999997632222 124578999999999998 9999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      |||++.+|.|.+.|...
T Consensus       114 vmEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK  130 (382)
T ss_pred             EEEecCCchHHHHHHHc
Confidence            99999999999988653

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.40  E-value=1.3e-12  Score=100.77  Aligned_cols=90  Identities=22%  Similarity=0.445  Sum_probs=78.3

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..+|+|.+... .    ...+.+.+|+.++.+++|+|++++.+++...+..++++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~-~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-T----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIIT   80 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC-c----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEE
Confidence            457777889999999999998888889999987641 1    13578999999999999999999999999889999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        81 e~~~~~~L~~~l~~~   95 (261)
T cd05072          81 EYMAKGSLLDFLKSD   95 (261)
T ss_pred             ecCCCCcHHHHHHHh
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.40  E-value=6.1e-13  Score=100.42  Aligned_cols=98  Identities=23%  Similarity=0.378  Sum_probs=82.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|.....||.|+||.|...+.+ +|..+|+|++.. ..--+..+.+...+|..+|..+.||.++++.+-+-.....+||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k-~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDK-QKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCH-HHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            34666678999999999999765 788999999975 2222233556788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcccc
Q 040605          205 YEYLERGSLATNLSNDAAAE  224 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~~~  224 (226)
                      |||.++|.|..+|++.+...
T Consensus       123 meyv~GGElFS~Lrk~~rF~  142 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSGRFS  142 (355)
T ss_pred             EeccCCccHHHHHHhcCCCC
Confidence            99999999999999876554

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.40  E-value=1.3e-12  Score=101.23  Aligned_cols=85  Identities=27%  Similarity=0.452  Sum_probs=71.0

Q ss_pred             eeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|+||.||+|...   .+..+|+|.++....   ......|.+|+.++++++|||++++++++......++||||++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS---VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP   78 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence            5899999999999754   345789998865211   2234578999999999999999999999998888999999999


Q ss_pred             CCChhhhccCC
Q 040605          210 RGSLATNLSND  220 (226)
Q Consensus       210 ~g~L~~~l~~~  220 (226)
                      +|+|.++|+..
T Consensus        79 ~g~L~~~l~~~   89 (269)
T cd05087          79 LGDLKGYLRSC   89 (269)
T ss_pred             CCcHHHHHHHh
Confidence            99999999753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.40  E-value=1.7e-12  Score=99.45  Aligned_cols=85  Identities=29%  Similarity=0.500  Sum_probs=73.7

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      +||+|+||.||++...++..+|+|.+....   .......|.+|++++..++|+|++++.+++...+..++||||+++|+
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDL---PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcC---CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            589999999999998888999999886421   12234578999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.+++...
T Consensus        79 L~~~~~~~   86 (250)
T cd05085          79 FLSFLRKK   86 (250)
T ss_pred             HHHHHHhc
Confidence            99998753

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=7e-13  Score=106.64  Aligned_cols=93  Identities=27%  Similarity=0.363  Sum_probs=78.6

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+... ..........+..|+.++..++|+||+++++++...+..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKS-DMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHH-HHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            5777789999999999999765 7899999998641 1111124567899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++...
T Consensus        81 e~~~~~~L~~~l~~~   95 (350)
T cd05573          81 EYMPGGDLMNLLIRK   95 (350)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999999998765

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.39  E-value=1.1e-12  Score=104.67  Aligned_cols=93  Identities=24%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... +|..+|+|.++.. ........+.+..|+.++..++|+||+++.+++...+..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKS-VLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            5777789999999999999664 7889999998752 1111224467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        81 e~~~~~~L~~~l~~~   95 (330)
T cd05601          81 EYQPGGDLLSLLNRY   95 (330)
T ss_pred             CCCCCCCHHHHHHHh
Confidence            999999999999764

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.39  E-value=1e-12  Score=104.65  Aligned_cols=90  Identities=24%  Similarity=0.387  Sum_probs=73.1

Q ss_pred             ceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          132 YCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      +.||+|+||.||++..    ..+..+|+|.++.............+..|+.++..++||||+++++++...+..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            4699999999999964    357899999986411111112345678999999999999999999999999999999999


Q ss_pred             cCCCChhhhccCCc
Q 040605          208 LERGSLATNLSNDA  221 (226)
Q Consensus       208 ~~~g~L~~~l~~~~  221 (226)
                      +++|+|.+++....
T Consensus        82 ~~~~~L~~~~~~~~   95 (323)
T cd05584          82 LSGGELFMHLEREG   95 (323)
T ss_pred             CCCchHHHHHHHcC
Confidence            99999999987543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.39  E-value=2.7e-12  Score=99.30  Aligned_cols=91  Identities=32%  Similarity=0.477  Sum_probs=77.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .++..+|+|.+... ...   ....+.+|+.++.+++|+|++++.+++...+..++|
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~---~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLE-PGD---DFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecC-ccc---hHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            4577778899999999999975 47889999998642 111   345688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.++++..
T Consensus        85 ~e~~~~~~L~~~~~~~  100 (267)
T cd06646          85 MEYCGGGSLQDIYHVT  100 (267)
T ss_pred             EeCCCCCcHHHHHHhc
Confidence            9999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.39  E-value=3.2e-13  Score=110.57  Aligned_cols=99  Identities=26%  Similarity=0.342  Sum_probs=81.3

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      .++....+++.....||+|.||+||+|.+-  ..||||.+.-..  ...+..+.|.+|+..+++-||.||+=+.|||..+
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh--GdVAVK~Lnv~~--pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH--GDVAVKLLNVDD--PTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccCHHHhhccceeccccccceeecccc--cceEEEEEecCC--CCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            444444555666778999999999999873  469999997522  2223678999999999999999999999999988


Q ss_pred             CeEEEEEEccCCCChhhhccCCcc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +. +||+.+|++-+|+.+||-.+.
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~et  483 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQET  483 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhh
Confidence            87 999999999999999996553

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.39  E-value=1.3e-12  Score=101.74  Aligned_cols=84  Identities=18%  Similarity=0.382  Sum_probs=69.1

Q ss_pred             eeccCCceeEEEEEcCC-------------------------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCc
Q 040605          133 CIGNGGHGSVYKAELPS-------------------------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN  187 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~-------------------------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~n  187 (226)
                      .||+|+||.||+|.+..                         ...|++|.+...    ......+|..|+.+++.++|+|
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~~~~~~~l~h~n   77 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS----HRDIALAFFETASLMSQVSHIH   77 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH----HHHHHHHHHHHHHHHhcCCCCC
Confidence            58999999999996421                         135888887541    1123467899999999999999


Q ss_pred             ccceeeEEEeCCeEEEEEEccCCCChhhhccCC
Q 040605          188 IVKFYGFCSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       188 lv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      |++++++|......++||||+++|+|..+++..
T Consensus        78 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~  110 (274)
T cd05076          78 LAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE  110 (274)
T ss_pred             eeeEEEEEEeCCceEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.39  E-value=2.8e-12  Score=99.09  Aligned_cols=93  Identities=25%  Similarity=0.397  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..+|+|.++. ....+....+.+.+|++++.+++|+|++++++++...+..+++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv   80 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQI-FEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIV   80 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeec-ccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            46777889999999999999776 889999998864 1222222457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.+++.+
T Consensus        81 ~e~~~~~~L~~~l~~   95 (267)
T cd08224          81 LELADAGDLSRMIKH   95 (267)
T ss_pred             EecCCCCCHHHHHHH
Confidence            999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.39  E-value=1.9e-12  Score=103.34  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=72.7

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      +||+|+||.||++... ++..+|+|.++.. ..........+..|..++..+ +||||+++.+++...+..++||||+++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~-~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKE-LVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            6899999999999764 7889999999752 111122345688999999988 799999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++...+
T Consensus        81 g~L~~~~~~~~   91 (329)
T cd05588          81 GDLMFHMQRQR   91 (329)
T ss_pred             CCHHHHHHHcC
Confidence            99999886543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.39  E-value=1.8e-12  Score=99.45  Aligned_cols=85  Identities=28%  Similarity=0.483  Sum_probs=73.1

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .||+|+||.||++... ++..+|+|.....   ........|.+|++++.+++|+|++++++++......++|+||+++|
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRET---LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG   78 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCcc---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence            5899999999999764 7889999987542   12224567999999999999999999999999999999999999999


Q ss_pred             ChhhhccCC
Q 040605          212 SLATNLSND  220 (226)
Q Consensus       212 ~L~~~l~~~  220 (226)
                      +|.++++..
T Consensus        79 ~L~~~~~~~   87 (252)
T cd05084          79 DFLTFLRTE   87 (252)
T ss_pred             cHHHHHHhC
Confidence            999999754

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.39  E-value=1.8e-12  Score=100.03  Aligned_cols=90  Identities=27%  Similarity=0.480  Sum_probs=78.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|++|.||++...++..+|+|.++.. ..    ..+.|.+|+.++++++|+|++++.+++...+..+++|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~-~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPG-TM----DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVT   80 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCC-cc----cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeee
Confidence            457777899999999999998877788999998652 11    2467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++...
T Consensus        81 e~~~~~~L~~~~~~~   95 (261)
T cd05068          81 ELMKYGSLLEYLQGG   95 (261)
T ss_pred             ecccCCcHHHHHhcc
Confidence            999999999999754

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.38  E-value=2e-12  Score=100.95  Aligned_cols=90  Identities=23%  Similarity=0.419  Sum_probs=75.4

Q ss_pred             CccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      +|...+.||+|+||.||+|..     ..+..+++|.+...   ........|.+|++++++++|+|++++++++......
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   82 (283)
T cd05090           6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDI---NNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPV   82 (283)
T ss_pred             hceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCC---CCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCce
Confidence            466667899999999999964     35678999998641   1122346789999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      +++|||+++|+|.+++..
T Consensus        83 ~lv~e~~~~~~L~~~l~~  100 (283)
T cd05090          83 CMLFEYLNQGDLHEFLIM  100 (283)
T ss_pred             EEEEEcCCCCcHHHHHHh
Confidence            999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.38  E-value=1.5e-12  Score=101.37  Aligned_cols=91  Identities=35%  Similarity=0.603  Sum_probs=76.6

Q ss_pred             CccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      +|...+.||+|+||.||++...      ++..+|+|.+.....   ....+.|.+|++++.+++|+|++++.+++...+.
T Consensus         6 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   82 (280)
T cd05049           6 TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---NDARKDFEREAELLTNFQHENIVKFYGVCTEGDP   82 (280)
T ss_pred             HhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---HHHHHHHHHHHHHHHhcCCCCchheeeEEecCCC
Confidence            4566678999999999999653      347899999865211   1235789999999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+++|||+++|+|.++|+..
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~  102 (280)
T cd05049          83 PIMVFEYMEHGDLNKFLRSH  102 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhc
Confidence            99999999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.38  E-value=2.1e-12  Score=100.93  Aligned_cols=92  Identities=26%  Similarity=0.411  Sum_probs=77.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++... +|..+|+|.+....   .....+.+.+|++++..++|+||+++++++...+..++|
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA---KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC   81 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC---cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence            34556678999999999999654 68899999876421   122457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.++++..
T Consensus        82 ~e~~~~~~L~~~~~~~   97 (284)
T cd06620          82 MEFMDCGSLDRIYKKG   97 (284)
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999988754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.38  E-value=1.2e-12  Score=105.16  Aligned_cols=92  Identities=22%  Similarity=0.439  Sum_probs=74.9

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||+|..      .++..||||.++...   .......+.+|+.++.++ +|+||+++++++...
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVNLLGACTKP   83 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC---ChHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence            4677788999999999999962      357899999986421   112346788999999999 689999999988654


Q ss_pred             -CeEEEEEEccCCCChhhhccCC
Q 040605          199 -RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                       ...++++||+++|+|.++++..
T Consensus        84 ~~~~~lv~ey~~~g~L~~~i~~~  106 (343)
T cd05103          84 GGPLMVIVEFCKFGNLSNYLRSK  106 (343)
T ss_pred             CCceEEEEeccCCCcHHHHHHhc
Confidence             4678999999999999999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.38  E-value=2.4e-12  Score=102.61  Aligned_cols=88  Identities=22%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             eeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .||+|+||.||++.. .+|..+|+|.+.... .........+..|++++..++||||+++.+++...+..++||||+++|
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           2 LLGKGTFGKVILVKEKATGRYYAMKILKKEV-IVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            589999999999965 478999999986421 111223467789999999999999999999999999999999999999


Q ss_pred             ChhhhccCCc
Q 040605          212 SLATNLSNDA  221 (226)
Q Consensus       212 ~L~~~l~~~~  221 (226)
                      +|.+++...+
T Consensus        81 ~L~~~l~~~~   90 (325)
T cd05594          81 ELFFHLSRER   90 (325)
T ss_pred             cHHHHHHhcC
Confidence            9999887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.38  E-value=2.4e-12  Score=100.82  Aligned_cols=92  Identities=22%  Similarity=0.429  Sum_probs=76.4

Q ss_pred             hcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      +++|...+.||+|+||.||+|..+      .+..||+|.+...   ........+.+|+..+..++|+|++++++++...
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNES---ASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG   81 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCc---CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            456777889999999999998542      2458999987642   1122345788999999999999999999999988


Q ss_pred             CeEEEEEEccCCCChhhhccC
Q 040605          199 RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +..+++|||+++|+|.++++.
T Consensus        82 ~~~~lv~e~~~~g~L~~~l~~  102 (288)
T cd05061          82 QPTLVVMELMAHGDLKSYLRS  102 (288)
T ss_pred             CCcEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999975

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.38  E-value=2.9e-12  Score=100.50  Aligned_cols=94  Identities=28%  Similarity=0.452  Sum_probs=78.6

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|.....||+|+||.||++... ++..+|+|.+.. ...........+.+|++++++++|||++++++++...+..+++|
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSK-AKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            5677788999999999999764 689999999864 11111223567899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++...
T Consensus        81 e~~~~~~L~~~~~~~~   96 (290)
T cd05580          81 EYVPGGELFSHLRKSG   96 (290)
T ss_pred             ecCCCCCHHHHHHHcC
Confidence            9999999999987553

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.38  E-value=1.9e-12  Score=103.56  Aligned_cols=92  Identities=25%  Similarity=0.291  Sum_probs=76.3

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... .+..+|+|.+... ..........+..|..++..++|+||+++.+++...+..++||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKW-EMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHH-HHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            5777789999999999999775 5778999998531 1111113355889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++|+|.+++++
T Consensus        81 ey~~~g~L~~~l~~   94 (332)
T cd05623          81 DYYVGGDLLTLLSK   94 (332)
T ss_pred             eccCCCcHHHHHHH
Confidence            99999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.37  E-value=2.6e-12  Score=100.04  Aligned_cols=94  Identities=21%  Similarity=0.432  Sum_probs=77.8

Q ss_pred             HhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      .+++|...+.||+|+||.||++...      .+..+|+|++...   .......+|.+|+.++..++|+|++++++++..
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~---~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            3466888889999999999998642      3567999987541   122245679999999999999999999999998


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++|+||+++|+|.+++++.
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~  103 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYLRSL  103 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHc
Confidence            89999999999999999999753

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.37  E-value=2.5e-12  Score=99.61  Aligned_cols=92  Identities=25%  Similarity=0.442  Sum_probs=76.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-C---CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-S---GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~---g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      .+|...+.||+|+||.||+|... +   +..+|+|.++...   .....+.|.+|+.++.+++||||+++.+++...+..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY---TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            35667789999999999999653 2   3379999886421   122356899999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      +++|||+++|+|.++++..
T Consensus        81 ~lv~e~~~~~~L~~~~~~~   99 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKH   99 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhc
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.37  E-value=2.9e-12  Score=100.00  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=70.4

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||+||++... ++..+|+|.+... ........+.+..|+++++.++|+|++++.+++......++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKK-RLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHH-HHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            689999999999764 7889999998641 11111234567899999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 040605          213 LATNLSN  219 (226)
Q Consensus       213 L~~~l~~  219 (226)
                      |.+++..
T Consensus        80 L~~~~~~   86 (280)
T cd05608          80 LRYHIYN   86 (280)
T ss_pred             HHHHHHh
Confidence            9988753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.37  E-value=9.4e-13  Score=103.47  Aligned_cols=93  Identities=25%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|..|+||.+.+. .+...|+|++.+ ..............|-++|+.+.||.+..|++.+.+++..+++||
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK-~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDK-ESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecH-HHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            455567999999999999886 458899999976 222222345677889999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      ||++|+|+..++.+.
T Consensus       158 yCpGGdL~~LrqkQp  172 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQP  172 (459)
T ss_pred             cCCCccHHHHHhhCC
Confidence            999999999887654

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.37  E-value=3.1e-12  Score=99.13  Aligned_cols=86  Identities=27%  Similarity=0.420  Sum_probs=70.7

Q ss_pred             eeccCCceeEEEEEcCC---CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNGGHGSVYKAELPS---GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~---g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|+||.||+|...+   ...+++|.+...   ........|.+|+..++.++|+||+++++.+......++||||++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRAS---ATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCcc---CChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            48999999999996543   346788876541   122245678999999999999999999999999999999999999


Q ss_pred             CCChhhhccCCc
Q 040605          210 RGSLATNLSNDA  221 (226)
Q Consensus       210 ~g~L~~~l~~~~  221 (226)
                      +|+|.++|+..+
T Consensus        79 ~g~L~~~l~~~~   90 (269)
T cd05042          79 LGDLKNYLRSNR   90 (269)
T ss_pred             CCcHHHHHHhcc
Confidence            999999997643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.37  E-value=3.6e-12  Score=101.80  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.++... .........+..|..++.++ +||||+++++++...+..++||||+++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           2 VIGRGSYAKVLLVRLKKTERIYAMKVVKKEL-VNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEhhH-hcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            6899999999999764 67899999987521 12222446678899888776 899999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++...+
T Consensus        81 ~~L~~~~~~~~   91 (329)
T cd05618          81 GDLMFHMQRQR   91 (329)
T ss_pred             CCHHHHHHHcC
Confidence            99999886543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.36  E-value=5.3e-12  Score=97.31  Aligned_cols=91  Identities=26%  Similarity=0.510  Sum_probs=79.2

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .++|...+.||+|+||.||++...++..+|+|.+... ..    ...++.+|+..+++++|+|++++++++......+++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~-~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPG-TM----SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV   79 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCC-cc----CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEE
Confidence            3567788899999999999998877889999998651 11    346799999999999999999999999988899999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.++++..
T Consensus        80 ~e~~~~~~L~~~i~~~   95 (261)
T cd05034          80 TEYMSKGSLLDFLKSG   95 (261)
T ss_pred             EeccCCCCHHHHHhcc
Confidence            9999999999999764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.36  E-value=3.1e-12  Score=103.16  Aligned_cols=87  Identities=26%  Similarity=0.428  Sum_probs=72.9

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..||+|.+...   ........+.+|++++..++|+||+++++++...+..++|||
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGN---HEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecC---CcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEe
Confidence            344567999999999999764 7899999998542   122245679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhc
Q 040605          207 YLERGSLATNL  217 (226)
Q Consensus       207 ~~~~g~L~~~l  217 (226)
                      |+++|+|.+..
T Consensus       153 ~~~~~~L~~~~  163 (353)
T PLN00034        153 FMDGGSLEGTH  163 (353)
T ss_pred             cCCCCcccccc
Confidence            99999997653

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.36  E-value=2.4e-12  Score=99.79  Aligned_cols=85  Identities=33%  Similarity=0.515  Sum_probs=69.3

Q ss_pred             eeccCCceeEEEEEcCCC---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNGGHGSVYKAELPSG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|+||.||++...++   ..+++|.+...   ......+.|.+|+.+++.++|||++++++.|......++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKAN---ASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE   78 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCC---CChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence            589999999999965433   34566766431   112245789999999999999999999999999999999999999


Q ss_pred             CCChhhhccCC
Q 040605          210 RGSLATNLSND  220 (226)
Q Consensus       210 ~g~L~~~l~~~  220 (226)
                      +|+|.++++..
T Consensus        79 ~~~L~~~l~~~   89 (268)
T cd05086          79 LGDLKSYLSQE   89 (268)
T ss_pred             CCcHHHHHHhh
Confidence            99999999753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.36  E-value=2.8e-12  Score=98.72  Aligned_cols=89  Identities=26%  Similarity=0.482  Sum_probs=76.2

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +|.....||+|+||.||.+...++..+|+|.+... ..    ....|.+|+.++.+++||||+++++++...+..+++||
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SM----SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTE   79 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cc----cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEE
Confidence            45666789999999999998877778999988641 11    24679999999999999999999999988888999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        80 ~~~~~~l~~~i~~~   93 (256)
T cd05113          80 YMSNGCLLNYLREH   93 (256)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999999753

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.36  E-value=5.3e-12  Score=98.56  Aligned_cols=90  Identities=38%  Similarity=0.566  Sum_probs=74.1

Q ss_pred             CccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--C
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--R  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~  199 (226)
                      +|...+.||+|+||.||++..     .++..+|+|.+...    .....+.|.+|++++.+++|+|++++.+++...  .
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS----TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC----CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            466677899999999999964     35789999998641    222457899999999999999999999987543  4


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++|+||+++|+|.+++.+.
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~  101 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKH  101 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhc
Confidence            678999999999999999754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.36  E-value=1.4e-12  Score=107.58  Aligned_cols=92  Identities=28%  Similarity=0.457  Sum_probs=74.9

Q ss_pred             cCccccceeccCCceeEEEEEcC---CC--CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP---SG--EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~---~g--~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      +.+.....||.|.||.||+|.+.   .|  ..||||.-+.+.   +....+.|+.|..+|++++||||++|+|.|.+ .+
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~---t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P  464 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC---TPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QP  464 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCC---ChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cc
Confidence            44566678999999999999763   33  368888876522   22357899999999999999999999999974 56


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .+||||.++.|.|..||..+.
T Consensus       465 ~WivmEL~~~GELr~yLq~nk  485 (974)
T KOG4257|consen  465 MWIVMELAPLGELREYLQQNK  485 (974)
T ss_pred             eeEEEecccchhHHHHHHhcc
Confidence            899999999999999998543

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=3e-12  Score=99.80  Aligned_cols=92  Identities=25%  Similarity=0.451  Sum_probs=78.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|++|.||++... ++..+|+|.+..    ......+.|.+|++++++++|+|++++++.+......++
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   79 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQI----ESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWI   79 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEee----CCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEE
Confidence            345677778999999999999774 688999999864    122345789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        80 v~e~~~~~~L~~~~~~~   96 (280)
T cd06611          80 LIEFCDGGALDSIMLEL   96 (280)
T ss_pred             EeeccCCCcHHHHHHHh
Confidence            99999999999998753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.36  E-value=4.9e-12  Score=97.13  Aligned_cols=92  Identities=25%  Similarity=0.373  Sum_probs=78.2

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+++|.+... . ........+.+|++++++++|+|++++++++...+..++++
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~-~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLS-K-MNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVM   78 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehh-h-CCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEE
Confidence            3566778999999999999764 7899999998641 1 11235678999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.++++..
T Consensus        79 e~~~~~~L~~~l~~~   93 (256)
T cd08529          79 EYAENGDLHKLLKMQ   93 (256)
T ss_pred             EeCCCCcHHHHHHHh
Confidence            999999999999764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.36  E-value=3.1e-12  Score=101.49  Aligned_cols=91  Identities=24%  Similarity=0.414  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|....+||.|..++||++. .+.+..||||++.......   ......+|+..|+-++||||++.+..+..+...|+|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~---~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvV  102 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN---DLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVV  102 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh---hHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEe
Confidence            567888899999999999994 4678999999997633322   367899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |.||..|++.+.++.
T Consensus       103 mpfMa~GS~ldIik~  117 (516)
T KOG0582|consen  103 MPFMAGGSLLDIIKT  117 (516)
T ss_pred             ehhhcCCcHHHHHHH
Confidence            999999999998874

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.36  E-value=5.3e-12  Score=98.79  Aligned_cols=91  Identities=22%  Similarity=0.317  Sum_probs=75.0

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+|+|.+... ..........+.+|+.++.+++|+|++++.+.+...+..++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehh-hccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            455678999999999999664 7889999998642 11112233567889999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++|+|.+++..
T Consensus        81 ~~~g~~L~~~l~~   93 (285)
T cd05630          81 LMNGGDLKFHIYH   93 (285)
T ss_pred             ecCCCcHHHHHHH
Confidence            9999999998854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.36  E-value=3.4e-12  Score=99.92  Aligned_cols=93  Identities=29%  Similarity=0.512  Sum_probs=78.0

Q ss_pred             hcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      .++|...+.||+|+||.||++...      ++..+|+|.++..   ......+.|.+|+.++++++|+|++++.+++...
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCC---cCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            356777889999999999999653      4678999998642   1223456799999999999999999999999988


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..++++||+++|+|.++++..
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~  102 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHR  102 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHc
Confidence            8999999999999999999753

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.36  E-value=5e-12  Score=99.86  Aligned_cols=94  Identities=28%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... .+..|++|.+... ..........+.+|+.++..++|+||+++++.+...+..++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQ-NLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehh-hhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            5677789999999999999764 6789999998652 1111223467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++...+
T Consensus        81 e~~~g~~L~~~l~~~~   96 (305)
T cd05609          81 EYVEGGDCATLLKNIG   96 (305)
T ss_pred             ecCCCCcHHHHHHHcC
Confidence            9999999999997543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.36  E-value=6.6e-12  Score=96.43  Aligned_cols=94  Identities=30%  Similarity=0.448  Sum_probs=77.9

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCC-CchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPG-DQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~-~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|++|.||+|... ++..+++|.+...... ......+.+.+|+.+++.++|+|++++.+++...+..++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            445678999999999999775 7899999998642211 11224568999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++++|.+++++..
T Consensus        82 e~~~~~~L~~~~~~~~   97 (258)
T cd06632          82 ELVPGGSLAKLLKKYG   97 (258)
T ss_pred             EecCCCcHHHHHHhcC
Confidence            9999999999997644

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.35  E-value=3.2e-12  Score=98.86  Aligned_cols=92  Identities=24%  Similarity=0.400  Sum_probs=77.7

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++.. .++..++||.+.. ....+......+.+|+.++..++|+|++++++++...+..+++|
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~-~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQI-FDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeee-hhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            566677899999999999975 4889999998864 22222334568999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++++|.++++.
T Consensus        82 e~~~~~~L~~~~~~   95 (267)
T cd08229          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             EecCCCCHHHHHHH
Confidence            99999999998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.35  E-value=7.8e-13  Score=101.44  Aligned_cols=93  Identities=27%  Similarity=0.377  Sum_probs=74.3

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~  201 (226)
                      .++|...+.|++|+||.||+|+.+ +++.||+|+++-..  ......-.-++|+.++.+++|||||.+..+....  +..
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmek--ek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEK--EKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccc--ccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            345777788999999999999764 78999999997522  1112334578999999999999999998887553  579


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      |||||||++ ||..+|+.-
T Consensus       153 y~VMe~~Eh-DLksl~d~m  170 (419)
T KOG0663|consen  153 YIVMEYVEH-DLKSLMETM  170 (419)
T ss_pred             eeeHHHHHh-hHHHHHHhc
Confidence            999999985 898888754

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.35  E-value=3.8e-12  Score=101.13  Aligned_cols=87  Identities=24%  Similarity=0.406  Sum_probs=72.0

Q ss_pred             ceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          132 YCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      +.||+|+||.||++..    .+|..+|+|.+.....  .......+..|++++.+++||||+++.+++...+..++||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATL--KVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHh--hhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            4699999999998853    3688999999864111  111345678899999999999999999999999999999999


Q ss_pred             cCCCChhhhccCC
Q 040605          208 LERGSLATNLSND  220 (226)
Q Consensus       208 ~~~g~L~~~l~~~  220 (226)
                      +++|+|.+++...
T Consensus        80 ~~~~~L~~~l~~~   92 (318)
T cd05582          80 LRGGDLFTRLSKE   92 (318)
T ss_pred             CCCCcHHHHHHHc
Confidence            9999999998754

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.35  E-value=6.9e-12  Score=98.30  Aligned_cols=91  Identities=23%  Similarity=0.356  Sum_probs=75.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.++......   ....+.+|+.++.+++||||+++.+++...+..++|
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---APCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCC---cchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            45777789999999999999764 78899999986422111   235678999999999999999999999988899999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ |+|.+++...
T Consensus        82 ~e~~~-~~l~~~l~~~   96 (288)
T cd07871          82 FEYLD-SDLKQYLDNC   96 (288)
T ss_pred             EeCCC-cCHHHHHHhc
Confidence            99998 5999988653

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.35  E-value=5.5e-13  Score=111.08  Aligned_cols=86  Identities=26%  Similarity=0.437  Sum_probs=73.3

Q ss_pred             ccceeccCCceeEEEEEcC--CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          130 AKYCIGNGGHGSVYKAELP--SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~--~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ..++||+|.||.|++|.+.  .|.  .||||.++.+....   ...+|++|+.+|.+++|+|+++|+|...+ ...++|+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~---~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~  189 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA---IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVF  189 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch---hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHh
Confidence            3457999999999999774  444  68999997632221   56899999999999999999999999987 7789999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      |.++.|+|.+.|++
T Consensus       190 ELaplGSLldrLrk  203 (1039)
T KOG0199|consen  190 ELAPLGSLLDRLRK  203 (1039)
T ss_pred             hhcccchHHHHHhh
Confidence            99999999999997

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.35  E-value=3.5e-12  Score=99.33  Aligned_cols=94  Identities=24%  Similarity=0.423  Sum_probs=77.9

Q ss_pred             hcCccccceeccCCceeEEEEEcCC------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPS------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      .++|...+.||+|++|.||++...+      +..|++|.....   ........|.+|+.+++.++|+||+++++++...
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPES---CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            3567778899999999999997643      567899987541   1122346799999999999999999999999988


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..+++|||+++|+|.++++..+
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~  104 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENR  104 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhC
Confidence            88999999999999999997654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.35  E-value=2.9e-12  Score=100.69  Aligned_cols=91  Identities=26%  Similarity=0.500  Sum_probs=74.6

Q ss_pred             cCccccceeccCCceeEEEEEcCC---------------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccc
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS---------------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK  190 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~---------------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~  190 (226)
                      .+|...+.||+|+||.||++....               ...+|+|.++...   .......|.+|++++.+++|+|+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV---TKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            356677789999999999986532               2358999886421   1223467999999999999999999


Q ss_pred             eeeEEEeCCeEEEEEEccCCCChhhhccC
Q 040605          191 FYGFCSHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       191 l~g~~~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +++++...+..++||||+++++|.+++..
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  110 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQ  110 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHh
Confidence            99999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.34  E-value=8.9e-12  Score=97.03  Aligned_cols=90  Identities=23%  Similarity=0.353  Sum_probs=75.9

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++.. .++..+|+|......   .......+.+|+..+.+++|+|++++++++...+..++|+|
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc---chHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence            55667899999999999965 478899999875411   11234678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        83 ~~~~~~l~~~i~~~   96 (277)
T cd06641          83 YLGGGSALDLLEPG   96 (277)
T ss_pred             eCCCCcHHHHHhcC
Confidence            99999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.34  E-value=4.9e-12  Score=97.35  Aligned_cols=89  Identities=26%  Similarity=0.482  Sum_probs=76.1

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +|...+.||+|+||.||++..+++..+|+|.+... ..    ....|.+|+.++.+++|+|++++.+++...+..++++|
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG-AM----SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE   79 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccC-CC----CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEe
Confidence            35666789999999999998877778999988541 11    23578899999999999999999999998899999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.++++..
T Consensus        80 ~~~~~~L~~~l~~~   93 (256)
T cd05059          80 YMANGCLLNYLRER   93 (256)
T ss_pred             cCCCCCHHHHHHhc
Confidence            99999999999753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.34  E-value=6.8e-12  Score=98.16  Aligned_cols=92  Identities=21%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++.. .++..+|+|.+... ..........+.+|++++..++|+|++++.+++...+..++++|
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKK-RIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehh-hhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            44557899999999999966 47889999998641 11111233567889999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.+++...
T Consensus        81 ~~~~~~L~~~~~~~   94 (285)
T cd05632          81 IMNGGDLKFHIYNM   94 (285)
T ss_pred             eccCccHHHHHHHh
Confidence            99999999988643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.34  E-value=4.7e-12  Score=100.90  Aligned_cols=92  Identities=24%  Similarity=0.380  Sum_probs=71.5

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHH---hcCCCCcccceeeEEEeCCeEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL---TKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l---~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      |...+.||+|+||.||++... ++..||||.++... .......+.+.+|.+++   ..++||||+++++++...+..++
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l   79 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGD-IIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF   79 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence            344578999999999999764 78999999986411 11111335566666554   57789999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|..+++..
T Consensus        80 v~E~~~~~~L~~~~~~~   96 (324)
T cd05589          80 VMEYAAGGDLMMHIHTD   96 (324)
T ss_pred             EEcCCCCCcHHHHhhcC
Confidence            99999999999888653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.34  E-value=6.3e-12  Score=97.20  Aligned_cols=94  Identities=23%  Similarity=0.342  Sum_probs=77.8

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCC--chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGD--QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~--~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      |...+.||+|++|.||++.. .++..+|+|.+.......  .....+.+.+|+.++++++|+|++++++++...+..+++
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v   81 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLF   81 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEE
Confidence            56667899999999999965 578999999986422111  112356899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++++|.+++.+.+
T Consensus        82 ~e~~~~~~L~~~l~~~~   98 (268)
T cd06630          82 VEWMAGGSVSHLLSKYG   98 (268)
T ss_pred             EeccCCCcHHHHHHHhC
Confidence            99999999999987544

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.34  E-value=7.2e-12  Score=99.95  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=72.5

Q ss_pred             cceeccC--CceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          131 KYCIGNG--GHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       131 ~~~lg~g--~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ..+||+|  +|++||++.. .+|..||+|++.....  .....+.+.+|+.+++.++||||+++++++..++..++|+||
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEAC--TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhc--cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            3578999  7889999966 4789999999864211  122345677899999999999999999999999999999999


Q ss_pred             cCCCChhhhccC
Q 040605          208 LERGSLATNLSN  219 (226)
Q Consensus       208 ~~~g~L~~~l~~  219 (226)
                      +++|+|.+++..
T Consensus        81 ~~~~~l~~~~~~   92 (327)
T cd08227          81 MAYGSAKDLICT   92 (327)
T ss_pred             cCCCcHHHHHHh
Confidence            999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.34  E-value=5.7e-12  Score=97.55  Aligned_cols=92  Identities=24%  Similarity=0.515  Sum_probs=76.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CC---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|+..+.||+|+||.||++... ++   ..+|+|.+....   .....+.+..|++++.+++|+|++++.+++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY---TEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPA   81 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCc
Confidence            46777889999999999999764 33   379999886421   122356799999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      +++|||+++|+|.++++..
T Consensus        82 ~lv~e~~~~~~L~~~~~~~  100 (268)
T cd05063          82 MIITEYMENGALDKYLRDH  100 (268)
T ss_pred             EEEEEcCCCCCHHHHHHhc
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.34  E-value=9.6e-12  Score=98.16  Aligned_cols=91  Identities=21%  Similarity=0.351  Sum_probs=76.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+.......   ....+.+|+.+++.++|||++++.+++...+..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG---TPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLV   81 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccc---cchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEE
Confidence            56778889999999999999765 78899999986422111   235678999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ ++|.+++...
T Consensus        82 ~e~~~-~~l~~~~~~~   96 (303)
T cd07869          82 FEYVH-TDLCQYMDKH   96 (303)
T ss_pred             EECCC-cCHHHHHHhC
Confidence            99996 7888887653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.34  E-value=4.6e-12  Score=100.56  Aligned_cols=91  Identities=22%  Similarity=0.431  Sum_probs=74.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||.||+|... ++.    .||+|.+...   ......+.|..|+.++..++|+||++++|+|... .
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~   82 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-T   82 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-C
Confidence            45788889999999999999753 344    3899998641   1222457899999999999999999999999764 5


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        83 ~~~v~e~~~~g~l~~~l~~~  102 (316)
T cd05108          83 VQLITQLMPFGCLLDYVREH  102 (316)
T ss_pred             ceeeeecCCCCCHHHHHHhc
Confidence            67999999999999999864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.34  E-value=6.7e-12  Score=97.25  Aligned_cols=91  Identities=26%  Similarity=0.510  Sum_probs=76.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CC---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ++...+.||+|+||.||+|... ++   ..+|+|.+...   ........|..|+.++++++|||++++.+++...+..+
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   81 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG---YTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM   81 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE
Confidence            3566788999999999999764 33   36999998642   12234578999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +|+||+++|+|.++++..
T Consensus        82 lv~e~~~~~~L~~~l~~~   99 (269)
T cd05065          82 IITEFMENGALDSFLRQN   99 (269)
T ss_pred             EEEecCCCCcHHHHHhhC
Confidence            999999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.34  E-value=3.4e-12  Score=99.54  Aligned_cols=91  Identities=31%  Similarity=0.491  Sum_probs=75.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC--eEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR--HSFL  203 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~--~~~l  203 (226)
                      ++...+.||+|+||+||.+... +|...|||.+...   ... ..+.+.+|+.+|.+++|||||+..|.....+  ..+|
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~---~~~-~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELE---DSP-TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecc---cch-hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            3455568999999999999775 5899999998652   111 2567899999999999999999999865554  6889


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      .|||+++|+|.+++.+.+
T Consensus        94 ~mEy~~~GsL~~~~~~~g  111 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYG  111 (313)
T ss_pred             eeeccCCCcHHHHHHHcC
Confidence            999999999999998765

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=1e-11  Score=95.79  Aligned_cols=95  Identities=24%  Similarity=0.397  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCC-CchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPG-DQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~-~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|++|.||++.. .++..+|+|.+...... ......+.+.+|+.++.+++||||+++.+++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4677888999999999999975 46899999998642111 111234678999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ++||+++++|.+++...
T Consensus        82 v~e~~~~~~l~~~~~~~   98 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY   98 (263)
T ss_pred             EEEECCCCcHHHHHHHh
Confidence            99999999999988754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.33  E-value=6.7e-12  Score=97.82  Aligned_cols=86  Identities=27%  Similarity=0.359  Sum_probs=69.9

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||.||++... +|..+|+|.+... ..........+..|++++.+++||||+++.+++......++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKK-RLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHH-HhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            699999999999764 6899999998641 11111123456679999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.++++..
T Consensus        80 L~~~~~~~   87 (277)
T cd05607          80 LKYHIYNV   87 (277)
T ss_pred             HHHHHHhc
Confidence            99888643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.33  E-value=6e-12  Score=98.44  Aligned_cols=90  Identities=26%  Similarity=0.407  Sum_probs=74.2

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|++......  ....+.+.+|+.++..++|+||+++.+++...+..++||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN--EEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEE
Confidence            5777789999999999999775 6789999998652111  123467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhcc
Q 040605          206 EYLERGSLATNLS  218 (226)
Q Consensus       206 e~~~~g~L~~~l~  218 (226)
                      ||++++.+..+..
T Consensus        80 e~~~~~~l~~~~~   92 (287)
T cd07848          80 EYVEKNMLELLEE   92 (287)
T ss_pred             ecCCCCHHHHHHh
Confidence            9999877665543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.33  E-value=5.6e-12  Score=100.34  Aligned_cols=88  Identities=24%  Similarity=0.325  Sum_probs=71.7

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.+..... ......+.+..|.+++..+ +||||+++.+++...+..++||||+++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVI-LQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHh-hhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            5899999999999764 678999999864111 1112345678899998866 899999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++...+
T Consensus        81 ~~L~~~l~~~~   91 (321)
T cd05591          81 GDLMFQIQRSR   91 (321)
T ss_pred             CcHHHHHHHcC
Confidence            99999887544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.33  E-value=3.5e-12  Score=98.19  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=78.5

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|+.++++++|||++++.+++......++|+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQ-KCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVV   79 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehh-hhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEE
Confidence            3566788999999999999775 6899999998642 1122224578999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.+++...
T Consensus        80 e~~~~~~L~~~l~~~   94 (258)
T cd05578          80 DLLLGGDLRYHLSQK   94 (258)
T ss_pred             eCCCCCCHHHHHHhc
Confidence            999999999998755

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.33  E-value=9.2e-12  Score=95.98  Aligned_cols=89  Identities=22%  Similarity=0.424  Sum_probs=75.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++..+++..+|+|.+... ..    ....|.+|+.++++++|+|++++.++. ..+..++++
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~-~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~   79 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQG-SM----SPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIIT   79 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCC-CC----cHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEE
Confidence            456667889999999999999888999999998651 11    246799999999999999999999876 456789999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        80 e~~~~~~L~~~~~~~   94 (260)
T cd05067          80 EYMENGSLVDFLKTP   94 (260)
T ss_pred             EcCCCCCHHHHHHhc
Confidence            999999999998753

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.33  E-value=4.2e-12  Score=101.03  Aligned_cols=88  Identities=25%  Similarity=0.375  Sum_probs=71.8

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.+..... ......+.+..|..++..+ +||||+++++++...+..++||||+++
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVI-LQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHH-hhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            5899999999999765 688999999864111 1112346778888888876 699999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++...+
T Consensus        81 g~L~~~i~~~~   91 (320)
T cd05590          81 GDLMFHIQKSR   91 (320)
T ss_pred             chHHHHHHHcC
Confidence            99999987544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.33  E-value=8.2e-12  Score=104.62  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=73.9

Q ss_pred             ccccceeccCCceeEEEEEcC-C-CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-S-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~-g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|+||.||++... + +..||+|.+..    .+......+.+|+.+++.++||||+++++++...+..+|||
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~----~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~  144 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVML----NDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIM  144 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEccc----CCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEE
Confidence            677789999999999999643 4 67888887643    12223456888999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++|+|.++|+.
T Consensus       145 E~~~gg~L~~~l~~  158 (478)
T PTZ00267        145 EYGSGGDLNKQIKQ  158 (478)
T ss_pred             ECCCCCCHHHHHHH
Confidence            99999999998764

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.33  E-value=6.2e-13  Score=108.56  Aligned_cols=82  Identities=28%  Similarity=0.499  Sum_probs=70.9

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      ++...||.|+-|.||.|++ .++.||||+++.           --..++..|++++|+||+.+.|+|....-.+||||||
T Consensus       127 sELeWlGSGaQGAVF~Grl-~netVAVKKV~e-----------lkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfC  194 (904)
T KOG4721|consen  127 SELEWLGSGAQGAVFLGRL-HNETVAVKKVRE-----------LKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFC  194 (904)
T ss_pred             hhhhhhccCcccceeeeec-cCceehhHHHhh-----------hhhhhHHHHHhccCcceeeEeeeecCCceeEEeeecc
Confidence            3445799999999999999 578899999854           1235788899999999999999999999999999999


Q ss_pred             CCCChhhhccCCcc
Q 040605          209 ERGSLATNLSNDAA  222 (226)
Q Consensus       209 ~~g~L~~~l~~~~~  222 (226)
                      +.|.|.++|+..++
T Consensus       195 a~GqL~~VLka~~~  208 (904)
T KOG4721|consen  195 AQGQLYEVLKAGRP  208 (904)
T ss_pred             ccccHHHHHhccCc
Confidence            99999999986653

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.33  E-value=8.3e-12  Score=97.77  Aligned_cols=91  Identities=33%  Similarity=0.581  Sum_probs=76.0

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .+|...+.+|+|+||.||++..      .++..+|+|.+...    .......+.+|+.++.+++|+|++++.+++...+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA----SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc----CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            3567778899999999999964      23456899987641    1224567999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++++||+++|+|.++|+..
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~  101 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAH  101 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHc
Confidence            999999999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.33  E-value=6.2e-12  Score=99.25  Aligned_cols=92  Identities=23%  Similarity=0.405  Sum_probs=76.5

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||++..      ..+..+|+|.++....   ....+.+.+|+.+++++ +|+||+++++++...
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---SSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---hHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            4578888999999999999853      2345799998864211   22356799999999999 799999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..++++||+++|+|.++++..
T Consensus       112 ~~~~lv~e~~~~~~L~~~i~~~  133 (302)
T cd05055         112 GPILVITEYCCYGDLLNFLRRK  133 (302)
T ss_pred             CceEEEEEcCCCCcHHHHHHhC
Confidence            9999999999999999999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.33  E-value=8.3e-12  Score=98.56  Aligned_cols=93  Identities=32%  Similarity=0.550  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++... ++.  .+++|.++..   ........+.+|++++.++ +|+|++++.+++...+..
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~   83 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   83 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc---CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCc
Confidence            45777789999999999999764 454  4577776531   1122456789999999999 899999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++++||+++|+|.++++..+
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~  103 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSR  103 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcc
Confidence            99999999999999997543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.32  E-value=5.4e-12  Score=100.31  Aligned_cols=88  Identities=25%  Similarity=0.355  Sum_probs=71.9

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.++... .........+..|.+++..+ +||||+++.+++...+..++||||+++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDV-ILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHH-HhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            6899999999999765 67899999986411 11112345678899998887 799999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++....
T Consensus        81 ~~L~~~~~~~~   91 (318)
T cd05570          81 GDLMFHIQRSG   91 (318)
T ss_pred             CCHHHHHHHcC
Confidence            99999887543

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.32  E-value=6.9e-12  Score=99.92  Aligned_cols=88  Identities=27%  Similarity=0.408  Sum_probs=69.4

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHH-HHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIE-ALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~-~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... +|..+|+|.+..... ......+.+..|.. ++..++||||+++.+++...+..++||||+++
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAI-LKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHH-hhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            6899999999999764 789999999864111 11112345555555 46789999999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++....
T Consensus        81 g~L~~~l~~~~   91 (323)
T cd05575          81 GELFFHLQRER   91 (323)
T ss_pred             CCHHHHHHhcC
Confidence            99999987543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.32  E-value=7e-12  Score=96.85  Aligned_cols=90  Identities=27%  Similarity=0.481  Sum_probs=77.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|++|.||++... .+..+|+|.+.. ..    ....++.+|++++.+++|+|++++++++...+..+++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~-~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   80 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecC-Cc----hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEE
Confidence            34667788999999999999764 688999998864 11    1356799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        81 ~e~~~~~~L~~~~~~~   96 (263)
T cd05052          81 TEFMTYGNLLDYLREC   96 (263)
T ss_pred             EEeCCCCcHHHHHHhC
Confidence            9999999999998653

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.32  E-value=7.2e-12  Score=97.34  Aligned_cols=93  Identities=25%  Similarity=0.511  Sum_probs=76.7

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|.....||+|+||.||++...      +...+++|.+...   ........+.+|++++.+++|+|++++++++...+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT---KDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCc---cchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            45777788999999999999753      3457899987541   11113568999999999999999999999998888


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++|+||+++|+|.++++..+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~  103 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLRATK  103 (275)
T ss_pred             cceEEEEecCCCcHHHHHHhcc
Confidence            9999999999999999997544

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.32  E-value=1e-11  Score=95.42  Aligned_cols=89  Identities=29%  Similarity=0.517  Sum_probs=77.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++.. .|+.+|+|.+....     ...+.+.+|+.++++++|+|++++++++...+..++||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   79 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDS-----TAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVT   79 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccch-----hHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEE
Confidence            4567778999999999999987 48899999986521     13578999999999999999999999999888999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        80 e~~~~~~L~~~~~~~   94 (256)
T cd05039          80 EYMAKGSLVDYLRSR   94 (256)
T ss_pred             EecCCCcHHHHHHhc
Confidence            999999999998754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.32  E-value=8.7e-12  Score=97.72  Aligned_cols=90  Identities=28%  Similarity=0.460  Sum_probs=73.8

Q ss_pred             ccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      |...+.||+|+||.||+|...      ....+++|.+....   .......+.+|+.++..++||||+++++.+...+..
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA---SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC---CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            556678999999999999642      23578888876421   122356799999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++||+++|+|.+++...
T Consensus        79 ~lv~e~~~~~~L~~~l~~~   97 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRES   97 (290)
T ss_pred             EEEEEecCCCCHHHHHHhc
Confidence            9999999999999998753

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.32  E-value=7.4e-12  Score=99.45  Aligned_cols=87  Identities=25%  Similarity=0.407  Sum_probs=70.3

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.++..... .......+..|..++... +||||+++.+++.+.+..++||||+++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVL-MDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-hcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            5899999999999765 6789999998652110 011345677788888764 999999999999999999999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.+++...
T Consensus        81 g~L~~~l~~~   90 (316)
T cd05619          81 GDLMFHIQSC   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.32  E-value=8e-12  Score=96.67  Aligned_cols=92  Identities=29%  Similarity=0.428  Sum_probs=76.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .++..+|+|.++.. .   ......+.+|+.++..++|||++++++.+...+..+++
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~-~---~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLE-P---GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecC-c---hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            3566667899999999999965 46889999998652 1   12345688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++|+|.++++..+
T Consensus        85 ~e~~~~~~L~~~~~~~~  101 (267)
T cd06645          85 MEFCGGGSLQDIYHVTG  101 (267)
T ss_pred             EeccCCCcHHHHHHhcC
Confidence            99999999999886543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.32  E-value=7.2e-12  Score=98.50  Aligned_cols=93  Identities=25%  Similarity=0.444  Sum_probs=76.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-----------------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcc
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-----------------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI  188 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-----------------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl  188 (226)
                      ++|...+.||+|+||.||++...                 +...+|+|.+....   .......|.+|+.++.+++|+|+
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~E~~~l~~l~~~~i   81 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---NKNARNDFLKEIKIMSRLKDPNI   81 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCc
Confidence            45777889999999999987422                 23468999986421   12235689999999999999999


Q ss_pred             cceeeEEEeCCeEEEEEEccCCCChhhhccCCc
Q 040605          189 VKFYGFCSHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       189 v~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++++++...+..+++|||+++|+|.++++...
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05095          82 IRLLAVCITSDPLCMITEYMENGDLNQFLSRHE  114 (296)
T ss_pred             ceEEEEEecCCccEEEEEeCCCCcHHHHHHhcC
Confidence            999999999999999999999999999997643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.32  E-value=5.9e-12  Score=98.41  Aligned_cols=91  Identities=26%  Similarity=0.425  Sum_probs=77.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+....   .......+.+|+.++.+++|+|++++++++...+..++++
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL---DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCM   78 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEE
Confidence            4566678999999999999775 78999999886421   1123467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.++++..
T Consensus        79 e~~~~~~l~~~~~~~   93 (286)
T cd06622          79 EYMDAGSLDKLYAGG   93 (286)
T ss_pred             eecCCCCHHHHHHhc
Confidence            999999999998763

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.32  E-value=1.2e-11  Score=95.08  Aligned_cols=90  Identities=24%  Similarity=0.497  Sum_probs=77.1

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .+|...+.||+|+||.||++...++..+|+|.+... ..    ....|.+|++++.+++|+|++++++++......++++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AM----SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVF   78 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CC----CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEE
Confidence            346667789999999999998777889999988641 11    2467999999999999999999999999888999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        79 e~~~~~~L~~~~~~~   93 (256)
T cd05112          79 EFMEHGCLSDYLRAQ   93 (256)
T ss_pred             EcCCCCcHHHHHHhC
Confidence            999999999998754

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=3.3e-12  Score=105.82  Aligned_cols=96  Identities=23%  Similarity=0.377  Sum_probs=80.6

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +..++.||.|+-|.|..|+. .+|+.+|||.+... ............+|+.+|+-|.|||+++++..+.+..+.|+|.|
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~-~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKR-SELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeeccc-cccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            45567799999999999965 58999999999762 12222235678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCcccc
Q 040605          207 YLERGSLATNLSNDAAAE  224 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~~~~  224 (226)
                      |+++|.|.++|..+++..
T Consensus        93 yv~gGELFdylv~kG~l~  110 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKGPLP  110 (786)
T ss_pred             ecCCchhHHHHHhhCCCC
Confidence            999999999998776553

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.31  E-value=1.1e-11  Score=96.70  Aligned_cols=91  Identities=30%  Similarity=0.528  Sum_probs=75.4

Q ss_pred             CccccceeccCCceeEEEEEcCC------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPS------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      +|.....||+|+||.||++....      ...+|+|.+...   ........|.+|+..+.+++|||++++++++...+.
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~---~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~   82 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKEN---AEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQP   82 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccC---CCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCc
Confidence            46666789999999999996532      257999988642   122245679999999999999999999999998889


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++|...
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~  102 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRN  102 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhc
Confidence            99999999999999999754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.31  E-value=1.3e-11  Score=96.19  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=76.3

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+|+|.+....   .......+.+|+.++.+++|+|++++.+++...+..++|||
T Consensus         6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccc---cHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            555667999999999999764 68899999886411   11245789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        83 ~~~~~~L~~~i~~~   96 (277)
T cd06640          83 YLGGGSALDLLRAG   96 (277)
T ss_pred             cCCCCcHHHHHhcC
Confidence            99999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.31  E-value=4.6e-12  Score=98.59  Aligned_cols=90  Identities=26%  Similarity=0.378  Sum_probs=75.2

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||+|... ++..+|+|.+....   .....+.+.+|+.++++++|+|++++.+++...+..++|+|
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEecccc---chHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            444567999999999999754 67899999886421   11245679999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        83 ~~~~~~L~~~~~~~   96 (277)
T cd06642          83 YLGGGSALDLLKPG   96 (277)
T ss_pred             ccCCCcHHHHhhcC
Confidence            99999999998653

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.31  E-value=1.5e-11  Score=97.29  Aligned_cols=91  Identities=20%  Similarity=0.336  Sum_probs=75.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.++......   ....+.+|+.++++++|+|++++++++..++..++|
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC---cchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            45777788999999999999765 67899999986522211   235678999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ ++|.+++...
T Consensus        83 ~e~~~-~~l~~~~~~~   97 (309)
T cd07872          83 FEYLD-KDLKQYMDDC   97 (309)
T ss_pred             EeCCC-CCHHHHHHhc
Confidence            99998 5898888654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.31  E-value=1.8e-11  Score=94.03  Aligned_cols=91  Identities=18%  Similarity=0.312  Sum_probs=76.5

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.+|.+.. .++..+++|.+....  ......+.+.+|++++++++|+|++++++++...+..+++||
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTR--LSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecc--cchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            56678899999999888854 478899999986421  112245678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.+++...
T Consensus        80 ~~~~~~L~~~~~~~   93 (256)
T cd08221          80 YANGGTLYDKIVRQ   93 (256)
T ss_pred             ecCCCcHHHHHHhc
Confidence            99999999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.31  E-value=1.4e-11  Score=106.94  Aligned_cols=94  Identities=26%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.++. ...........+..|+.++..++|+||+++++++...+..++|
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~-~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKK-ADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEeh-hhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            46777889999999999999765 789999999865 2222223456789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++|+..
T Consensus        83 mEy~~g~~L~~li~~~   98 (669)
T cd05610          83 MEYLIGGDVKSLLHIY   98 (669)
T ss_pred             EeCCCCCCHHHHHHhc
Confidence            9999999999998754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.31  E-value=1.3e-11  Score=95.18  Aligned_cols=89  Identities=24%  Similarity=0.431  Sum_probs=76.2

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..+++|.+...     ....+.|.+|+.++++++|+|++++.+++.. ...+++|
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~   79 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-----SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIIT   79 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCC-----hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEE
Confidence            457778899999999999998877888999987641     1134679999999999999999999999877 7789999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++...
T Consensus        80 e~~~~~~L~~~~~~~   94 (260)
T cd05073          80 EFMAKGSLLDFLKSD   94 (260)
T ss_pred             EeCCCCcHHHHHHhC
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.31  E-value=1.8e-11  Score=94.58  Aligned_cols=95  Identities=24%  Similarity=0.378  Sum_probs=76.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC-CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP-GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~-~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~  201 (226)
                      .+|...+.||+|+||.||.+... ++..||+|.+..... .......+.+.+|+.++.+++|+||+++.+++...  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            46778889999999999999764 689999998854211 11122356788999999999999999999988653  467


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++||+++|+|.+++...
T Consensus        82 ~~v~e~~~~~~L~~~l~~~  100 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY  100 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc
Confidence            8999999999999998654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.31  E-value=9e-12  Score=99.58  Aligned_cols=95  Identities=17%  Similarity=0.278  Sum_probs=76.0

Q ss_pred             CccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      +|...+.||+|+||.||++..    .++..+|+|.+............+.+..|+.++..+ +|+||+++.+++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            356678899999999998854    367899999986411111122346688999999999 599999999999989999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++||||+++|+|.+++....
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~  100 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD  100 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC
Confidence            99999999999999987543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.31  E-value=8.8e-12  Score=99.03  Aligned_cols=88  Identities=26%  Similarity=0.420  Sum_probs=69.6

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc-CCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-IRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~-l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..||+|.++.... ......+.+..|..++.. .+||||+++++++...+..++||||+++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVV-LEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-hhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            5899999999999764 678999999864211 111134556677777765 4899999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++....
T Consensus        81 g~L~~~~~~~~   91 (316)
T cd05592          81 GDLMFHIQSSG   91 (316)
T ss_pred             CcHHHHHHHcC
Confidence            99999987543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.31  E-value=2.2e-11  Score=94.93  Aligned_cols=88  Identities=30%  Similarity=0.419  Sum_probs=73.9

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++.. .++..+|+|.+....   .....+.+.+|+.++.+++|||++++++++...+..++++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI---TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT   78 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC---ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence            455667899999999999965 478899999986421   1224567999999999999999999999999999999999


Q ss_pred             EccCCCChhhhc
Q 040605          206 EYLERGSLATNL  217 (226)
Q Consensus       206 e~~~~g~L~~~l  217 (226)
                      ||+++|+|..+.
T Consensus        79 e~~~~~~l~~~~   90 (279)
T cd06619          79 EFMDGGSLDVYR   90 (279)
T ss_pred             ecCCCCChHHhh
Confidence            999999997653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.31  E-value=1.3e-11  Score=95.71  Aligned_cols=94  Identities=31%  Similarity=0.431  Sum_probs=75.6

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCC-c-----hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGD-Q-----IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~-~-----~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      |...+.||+|+||.||+|.. .+|..+|+|.++...... .     ....+.+..|+.++..++|+|++++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45567899999999999965 478899999875311110 0     0123568899999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++|+||+++|+|.++++...
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~  103 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYG  103 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhcc
Confidence            999999999999999987653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.31  E-value=1e-11  Score=98.91  Aligned_cols=94  Identities=21%  Similarity=0.291  Sum_probs=74.7

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-CcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+..... ......+.+..|.+++..++| ++++++.+++...+..++|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVI-IQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   79 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEE
Confidence            3666788999999999999765 678999999864211 111235678899999999976 4688888888888999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++....
T Consensus        80 ~E~~~~g~L~~~~~~~~   96 (324)
T cd05587          80 MEYVNGGDLMYHIQQVG   96 (324)
T ss_pred             EcCCCCCcHHHHHHHcC
Confidence            99999999999887543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.30  E-value=8.9e-12  Score=99.17  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=68.8

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHH-HHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIE-ALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~-~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      +||+|+||.||++... ++..+|+|.+..... ........+..|.. ++..++||||+++.+++...+..++||||+++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTI-LKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHH-HHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            6899999999999764 688999999864111 11112345556654 57889999999999999999999999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.+++...
T Consensus        81 ~~L~~~l~~~   90 (321)
T cd05603          81 GELFFHLQRE   90 (321)
T ss_pred             CCHHHHHHHc
Confidence            9999888654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.30  E-value=1.9e-11  Score=96.21  Aligned_cols=90  Identities=24%  Similarity=0.400  Sum_probs=77.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .++..+|+|.+... ..   ...+.+.+|+.+++.++|+|++++++++...+..++|
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~-~~---~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   94 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQ-QQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   94 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecC-cc---chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEe
Confidence            4577778899999999999975 57899999998641 11   1346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      +||+++|+|.+++.+
T Consensus        95 ~e~~~~~~L~~~~~~  109 (297)
T cd06656          95 MEYLAGGSLTDVVTE  109 (297)
T ss_pred             ecccCCCCHHHHHHh
Confidence            999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.30  E-value=2.2e-11  Score=95.83  Aligned_cols=91  Identities=23%  Similarity=0.396  Sum_probs=77.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .++..+++|.+... ..   .....+.+|+.++..++|+|++++++++......++|
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~-~~---~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv   95 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ-QQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecC-Cc---chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEe
Confidence            4567778899999999999975 47889999998651 11   2346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++++.
T Consensus        96 ~e~~~~~~L~~~~~~~  111 (296)
T cd06654          96 MEYLAGGSLTDVVTET  111 (296)
T ss_pred             ecccCCCCHHHHHHhc
Confidence            9999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.30  E-value=9.2e-12  Score=99.23  Aligned_cols=93  Identities=20%  Similarity=0.281  Sum_probs=73.8

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|+||.||++... +|..||+|.+..... ......+.+..|..++..+. |++++++.+++...+..++||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVV-IQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            556688999999999999754 788999999864111 11123466888999998885 577888999998889999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++....
T Consensus        81 Ey~~~g~L~~~i~~~~   96 (323)
T cd05615          81 EYVNGGDLMYHIQQVG   96 (323)
T ss_pred             cCCCCCcHHHHHHHcC
Confidence            9999999999987543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.30  E-value=1.8e-11  Score=95.06  Aligned_cols=91  Identities=27%  Similarity=0.410  Sum_probs=77.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||.|++|.||++... ++..+|+|.+....   .......+.+|+.+++.++|+|++++.+++......++|+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE---AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc---cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            4556678999999999999764 68899999986422   1224567899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.++++..
T Consensus        79 e~~~~~~L~~~~~~~   93 (274)
T cd06609          79 EYCGGGSCLDLLKPG   93 (274)
T ss_pred             EeeCCCcHHHHHhhc
Confidence            999999999998764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.30  E-value=2.7e-11  Score=93.37  Aligned_cols=91  Identities=31%  Similarity=0.501  Sum_probs=78.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+++|.++.....  ....+.+..|+.++++++|+||+++++.+...+..++|+|
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc--hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            455678999999999999764 7889999998752221  2356789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.++++..
T Consensus        80 ~~~~~~L~~~~~~~   93 (264)
T cd06626          80 YCSGGTLEELLEHG   93 (264)
T ss_pred             cCCCCcHHHHHhhc
Confidence            99999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.30  E-value=5.3e-12  Score=98.63  Aligned_cols=98  Identities=28%  Similarity=0.420  Sum_probs=79.4

Q ss_pred             ccHHHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceee
Q 040605          116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYG  193 (226)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g  193 (226)
                      +.++.+..+.++|.....||+|+||.||++... ++..+|+|.+.. ..    .....+.+|+.++.++ +|+|++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~-~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~   82 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDP-IH----DIDEEIEAEYNILKALSDHPNVVKFYG   82 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecc-cc----chHHHHHHHHHHHHHHhcCCCeeeeee
Confidence            445566667788998899999999999999664 688999998754 11    1235688899999999 6999999999


Q ss_pred             EEEe-----CCeEEEEEEccCCCChhhhcc
Q 040605          194 FCSH-----ARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       194 ~~~~-----~~~~~lv~e~~~~g~L~~~l~  218 (226)
                      ++..     .+..+++|||+++|+|.++++
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  112 (286)
T cd06638          83 MYYKKDVKNGDQLWLVLELCNGGSVTDLVK  112 (286)
T ss_pred             eeeecccCCCCeEEEEEeecCCCCHHHHHH
Confidence            8842     356899999999999999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.30  E-value=1.2e-11  Score=95.63  Aligned_cols=89  Identities=25%  Similarity=0.480  Sum_probs=74.2

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...+...+|+|.+... ..    ....|.+|+.++..++|+|++++.+.+. .+..+++|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~-~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TM----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT   79 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccC-cc----CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEE
Confidence            447777889999999999998877778999998641 11    2467899999999999999999998874 45679999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        80 e~~~~~~L~~~~~~~   94 (262)
T cd05071          80 EYMSKGSLLDFLKGE   94 (262)
T ss_pred             EcCCCCcHHHHHhhc
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.30  E-value=1.3e-11  Score=98.58  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=71.9

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.++... .......+.+..|..++.++ +|+||+++.+++...+..++||||+++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKEL-VHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            6999999999999764 67899999997521 11122346688999999888 699999999999999999999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.+++...
T Consensus        81 ~~L~~~~~~~   90 (327)
T cd05617          81 GDLMFHMQRQ   90 (327)
T ss_pred             CcHHHHHHHc
Confidence            9999888654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.30  E-value=1.3e-11  Score=97.65  Aligned_cols=93  Identities=26%  Similarity=0.431  Sum_probs=76.4

Q ss_pred             cCccccceeccCCceeEEEEEcC--------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||.||++...        ++..+|+|.+....   .......+..|+.++.++ +|+|++++.+++.
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC---ChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            45777889999999999998642        23579999986421   122356788999999999 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+..++|+||+++|+|.++|+..+
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~  119 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARR  119 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcC
Confidence            9999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.30  E-value=1.2e-11  Score=98.57  Aligned_cols=88  Identities=24%  Similarity=0.370  Sum_probs=69.6

Q ss_pred             eeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHH-HHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIE-ALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~-~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++.. .+|..+|+|.+..... ........+..|.. ++..++||||+++.+++...+..++||||+++
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIV-LNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            589999999999965 4789999999864111 11123345666665 46779999999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.+++....
T Consensus        81 ~~L~~~l~~~~   91 (325)
T cd05604          81 GELFFHLQRER   91 (325)
T ss_pred             CCHHHHHHHcC
Confidence            99999887543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.30  E-value=2.3e-11  Score=95.85  Aligned_cols=91  Identities=22%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+.......   ....+.+|+.++.+++|+||+++++++...+..++|
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC---chhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            45777788999999999999764 67899999986422211   235678899999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||++ ++|.+++...
T Consensus        83 ~e~~~-~~l~~~l~~~   97 (301)
T cd07873          83 FEYLD-KDLKQYLDDC   97 (301)
T ss_pred             Eeccc-cCHHHHHHhc
Confidence            99998 6999988653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.29  E-value=3.1e-11  Score=93.19  Aligned_cols=91  Identities=27%  Similarity=0.407  Sum_probs=77.9

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+++|.+......   .....+.+|+..++.++|+|++++.+.+...+..++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ---TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc---hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            5777788999999999999754 7789999998642111   14578999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.++++..
T Consensus        79 e~~~~~~l~~~~~~~   93 (267)
T cd06610          79 PYLSGGSLLDIMKSS   93 (267)
T ss_pred             eccCCCcHHHHHHHh
Confidence            999999999999754

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.29  E-value=1.6e-11  Score=97.85  Aligned_cols=94  Identities=21%  Similarity=0.301  Sum_probs=74.6

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+..... ......+.+..|..++..+ +|++++++.+++...+..++|
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVV-IQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFV   79 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEE
Confidence            3666788999999999999765 678999999865211 1112345677888888877 589999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++....
T Consensus        80 ~E~~~~g~L~~~~~~~~   96 (323)
T cd05616          80 MEYVNGGDLMYQIQQVG   96 (323)
T ss_pred             EcCCCCCCHHHHHHHcC
Confidence            99999999999886543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.29  E-value=3e-11  Score=92.84  Aligned_cols=89  Identities=24%  Similarity=0.372  Sum_probs=75.6

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+|+|.++....   ....+.+..|+.+++.++|+|++++.+.+...+..++++|
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS---SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc---hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            556678999999999999664 788999999864211   1245678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++|+|.+++..
T Consensus        79 ~~~~~~l~~~~~~   91 (255)
T cd08219          79 YCDGGDLMQKIKL   91 (255)
T ss_pred             eCCCCcHHHHHHh
Confidence            9999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.29  E-value=1.6e-11  Score=95.41  Aligned_cols=92  Identities=21%  Similarity=0.411  Sum_probs=76.8

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||++...      .+..+|+|.+...   ........+.+|+.++..++|+|++++++++....
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNEN---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ   82 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCc---cCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence            45777789999999999999653      2468999998642   12224567899999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..+++|||+++|+|.+++...
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~  103 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSR  103 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhc
Confidence            999999999999999999754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.29  E-value=2.3e-11  Score=94.95  Aligned_cols=92  Identities=28%  Similarity=0.428  Sum_probs=76.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|.....||+|++|.||++... +|..+|+|++.....  .....+.+.+|+.++.+++|+|++++++++......+++|
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESED--DPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeeccc--CccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            4666778999999999999775 689999999864211  1113456889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++++.|..+++..
T Consensus        80 e~~~~~~l~~~~~~~   94 (286)
T cd07847          80 EYCDHTVLNELEKNP   94 (286)
T ss_pred             eccCccHHHHHHhCC
Confidence            999999888877543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.28  E-value=2.8e-11  Score=94.74  Aligned_cols=89  Identities=29%  Similarity=0.361  Sum_probs=73.8

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSFL  203 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~l  203 (226)
                      +|...+.||.|.+|.||++... ++..+|+|.+.....   ......+.+|++++++++|+||+++++++...  +..++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN---PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc---hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            5667788999999999999774 688999999864211   12457799999999999999999999998653  46899


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      ||||+++|+|.+++.
T Consensus        79 v~e~~~~~~L~~~l~   93 (287)
T cd06621          79 AMEYCEGGSLDSIYK   93 (287)
T ss_pred             EEEecCCCCHHHHHH
Confidence            999999999998875

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.28  E-value=2.7e-11  Score=93.07  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=76.6

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.+|++... +|..+|+|.+.....  ......++.+|+.++++++|+|++++.+++...+..++|+|
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKM--SPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhC--ChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            566788999999999999654 788999999864111  12245689999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.++++..
T Consensus        80 ~~~~~~l~~~~~~~   93 (256)
T cd08218          80 YCEGGDLYKKINAQ   93 (256)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.28  E-value=1.7e-11  Score=96.41  Aligned_cols=92  Identities=28%  Similarity=0.490  Sum_probs=75.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++... ++.  .+++|.++..   ......+.|.+|+.++.++ +|||++++.+++...+..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~   78 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF---ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYL   78 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc---CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcc
Confidence            45777789999999999999775 333  4788887531   1122356799999999999 799999999999988899


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++||+++|+|.++++..
T Consensus        79 ~lv~e~~~~~~L~~~l~~~   97 (297)
T cd05089          79 YIAIEYAPYGNLLDFLRKS   97 (297)
T ss_pred             eEEEEecCCCcHHHHHHhc
Confidence            9999999999999999754

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.28  E-value=2.3e-11  Score=93.81  Aligned_cols=89  Identities=27%  Similarity=0.482  Sum_probs=74.8

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..+|+|.+... ..    ..+.|.+|+.++.+++|+|++++++++. .+..+++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~-~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPG-TM----SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT   79 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCC-CC----CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence            346666789999999999998888889999998652 11    2467999999999999999999999875 45689999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++++.
T Consensus        80 e~~~~~~L~~~~~~~   94 (260)
T cd05070          80 EYMSKGSLLDFLKDG   94 (260)
T ss_pred             EecCCCcHHHHHHhc
Confidence            999999999999753

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.28  E-value=3e-11  Score=94.24  Aligned_cols=90  Identities=24%  Similarity=0.461  Sum_probs=75.1

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... +|..+|+|.++......   ....+.+|+.++.+++|+|++++++++...+..++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   77 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG---TPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVF   77 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccccc---chHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEE
Confidence            3666788999999999999875 68899999987522211   2456788999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++ |+|.+++...
T Consensus        78 e~~~-~~l~~~~~~~   91 (284)
T cd07836          78 EYMD-KDLKKYMDTH   91 (284)
T ss_pred             ecCC-ccHHHHHHhc
Confidence            9998 5899888654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.28  E-value=1.5e-11  Score=94.42  Aligned_cols=91  Identities=24%  Similarity=0.448  Sum_probs=76.5

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... +|..+|+|.+.... . .....+.+.+|+.+++.++|+|++++++.+...+..++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~-~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTK-M-PVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhh-c-cchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            566788999999999999775 68899999986421 1 11234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.+++.+.
T Consensus        80 ~~~~~~L~~~~~~~   93 (257)
T cd08225          80 YCDGGDLMKRINRQ   93 (257)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.28  E-value=1.6e-11  Score=95.70  Aligned_cols=93  Identities=20%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             hcCccccceeccCCceeEEEEEcCC-----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-C
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPS-----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-A  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~-----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~  198 (226)
                      .++|...++||+|+||.||+|...+     +..|++|.+...   ........+.+|+.++.+++|+|++++++++.. .
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~---~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH---ASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC---CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            3567778899999999999997754     678999988641   222345778999999999999999999999876 4


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++++||+++|+|.++|...
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~  103 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQC  103 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhc
Confidence            6789999999999999998754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.28  E-value=2.5e-11  Score=93.65  Aligned_cols=87  Identities=25%  Similarity=0.346  Sum_probs=73.5

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||.|++|.||++... ++..+++|.+... ........+.+.+|+.+++.++|+|++++++.+..+...++++||+++|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKR-HIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehh-cchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            689999999999775 5889999998652 21222245779999999999999999999999999999999999999999


Q ss_pred             hhhhccCCc
Q 040605          213 LATNLSNDA  221 (226)
Q Consensus       213 L~~~l~~~~  221 (226)
                      |.++|++..
T Consensus        80 L~~~l~~~~   88 (262)
T cd05572          80 LWTILRDRG   88 (262)
T ss_pred             HHHHHhhcC
Confidence            999997653

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.28  E-value=2.3e-11  Score=95.04  Aligned_cols=90  Identities=30%  Similarity=0.451  Sum_probs=73.8

Q ss_pred             ccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--Ce
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RH  200 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~  200 (226)
                      |...+.||+|+||.||.+..     .++..+|+|.++...   .......+.+|+.+++.++|+|++++.+++...  ..
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES---GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc---cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            45567899999999999864     357889999986421   122356899999999999999999999998775  56


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+++|||+++|+|.+++...
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~  102 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRN  102 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhc
Confidence            88999999999999998653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.28  E-value=2.5e-11  Score=95.08  Aligned_cols=91  Identities=22%  Similarity=0.376  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|++|.||++..+ ++..+|+|.+.......   ....+.+|++++++++|+||+++++++...+..++|
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG---APFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC---CchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            45777789999999999999765 78899999986522111   234577899999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ ++|.+++...
T Consensus        82 ~e~~~-~~L~~~~~~~   96 (291)
T cd07844          82 FEYLD-TDLKQYMDDC   96 (291)
T ss_pred             EecCC-CCHHHHHHhC
Confidence            99998 5999988753

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=1e-11  Score=103.18  Aligned_cols=95  Identities=25%  Similarity=0.412  Sum_probs=78.6

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ..++|....+||+|+||+|+.+.++ +++.+|||.+++.. .-...+.+..+.|.+++.-. +||.|+.+..++.+.++.
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~-Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD-ILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccc-eeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3467888999999999999999876 67899999998732 22223567788888888776 699999999999999999


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      +.||||..+||+..+.+.
T Consensus       445 ~fvmey~~Ggdm~~~~~~  462 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIHT  462 (694)
T ss_pred             EEEEEecCCCcEEEEEec
Confidence            999999999997666653

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.28  E-value=2.3e-11  Score=94.89  Aligned_cols=91  Identities=33%  Similarity=0.635  Sum_probs=75.7

Q ss_pred             CccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++.....||+|+||.||++..      .++..+|+|.+..    ........|.+|++++..++|+||+++.+++...+.
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE----ASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRP   81 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCc----CCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCc
Confidence            456667899999999999853      2456889998754    122245789999999999999999999999998899


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++++||+++|+|.++++...
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~  102 (280)
T cd05092          82 LLMVFEYMRHGDLNRFLRSHG  102 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcC
Confidence            999999999999999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.28  E-value=2.3e-11  Score=95.57  Aligned_cols=91  Identities=25%  Similarity=0.404  Sum_probs=77.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .++..+++|.+.. ..   ....+.+.+|+.++++++|||++++.+.+...+..++|
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~-~~---~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv   94 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNL-QQ---QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVV   94 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecc-cc---chHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEE
Confidence            4566778899999999999965 4788999999854 11   12346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++.+.
T Consensus        95 ~e~~~~~~L~~~~~~~  110 (293)
T cd06647          95 MEYLAGGSLTDVVTET  110 (293)
T ss_pred             EecCCCCcHHHHHhhc
Confidence            9999999999998753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.28  E-value=1.4e-11  Score=97.28  Aligned_cols=93  Identities=25%  Similarity=0.457  Sum_probs=76.2

Q ss_pred             cCccccceeccCCceeEEEEEc--------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL--------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      .+|.....||+|+||.||++..        .++..+|+|.+...   ......+.+.+|+.++..+ +|+||+++++++.
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc---cchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            4566778899999999999853        13457999988642   1122457899999999999 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .....+++|||+++|+|.++|+..+
T Consensus        92 ~~~~~~lv~e~~~~~~L~~~l~~~~  116 (304)
T cd05101          92 QDGPLYVIVEYASKGNLREYLRARR  116 (304)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcC
Confidence            9999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.28  E-value=2.4e-11  Score=94.18  Aligned_cols=90  Identities=24%  Similarity=0.462  Sum_probs=72.0

Q ss_pred             cccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe----
Q 040605          129 DAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH----  200 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~----  200 (226)
                      ...+.||+|+||.||++....    +..+|+|.++...  ........+.+|++.+..++|+|++++++++...+.    
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           2 KLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDI--HTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             ccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCc--CCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            456789999999999997642    3679999986421  122245689999999999999999999999866554    


Q ss_pred             --EEEEEEccCCCChhhhccCC
Q 040605          201 --SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 --~~lv~e~~~~g~L~~~l~~~  220 (226)
                        .++++||+++|+|.+++...
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~  101 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYS  101 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHh
Confidence              79999999999999998543

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.28  E-value=3.4e-11  Score=95.51  Aligned_cols=93  Identities=24%  Similarity=0.339  Sum_probs=78.2

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+|+|.+... ........+.+..|++++..++|+||+++++.+...+..+++|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKK-EMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEecc-ccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            5667788999999999999775 5899999998652 2121224567899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.+++...
T Consensus        81 e~~~~~~L~~~~~~~   95 (316)
T cd05574          81 DYCPGGELFRLLQRQ   95 (316)
T ss_pred             EecCCCCHHHHHHhC
Confidence            999999999998753

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.28  E-value=1.2e-11  Score=96.94  Aligned_cols=93  Identities=27%  Similarity=0.486  Sum_probs=76.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||++...      ....+|+|.+...   ........+.+|+.++.++ +|+|++++++++..
T Consensus        11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   87 (293)
T cd05053          11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ   87 (293)
T ss_pred             HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCC---CCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC
Confidence            355777789999999999999653      2357899988642   1122346789999999999 89999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..+++|||+++|+|.++++..
T Consensus        88 ~~~~~li~e~~~~~~L~~~l~~~  110 (293)
T cd05053          88 EGPLYVVVEYAAHGNLRDFLRAR  110 (293)
T ss_pred             CCCeEEEEEeCCCCcHHHHHHhc
Confidence            99999999999999999999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.28  E-value=2.1e-11  Score=95.63  Aligned_cols=90  Identities=36%  Similarity=0.619  Sum_probs=75.0

Q ss_pred             CccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      +|...+.||+|+||.||++...      ++..+++|.+..    ......+.+.+|+..+.+++|+|++++.+++...+.
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD----PTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDP   81 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCC----ccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCc
Confidence            4666778999999999999642      345688888754    222234679999999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.++++..
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~  101 (291)
T cd05094          82 LIMVFEYMKHGDLNKFLRAH  101 (291)
T ss_pred             eEEEEecCCCCcHHHHHHhc
Confidence            99999999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.28  E-value=2.2e-11  Score=93.80  Aligned_cols=83  Identities=27%  Similarity=0.401  Sum_probs=68.0

Q ss_pred             eccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          134 IGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       134 lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ||+|+||.||+|...   .+..||+|.+....   .....+.|.+|+.++++++|+||+++++++. .+..++|+||+++
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~   78 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN---EKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASG   78 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEccccc---ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCC
Confidence            899999999999653   45579999886521   1224567999999999999999999999885 4568999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.++++..
T Consensus        79 ~~L~~~l~~~   88 (257)
T cd05115          79 GPLNKFLSGK   88 (257)
T ss_pred             CCHHHHHHhC
Confidence            9999999753

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-12  Score=107.10  Aligned_cols=89  Identities=29%  Similarity=0.439  Sum_probs=74.8

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |.....||.|+||.||-+.. .+...||||++.- +........++.+.|+..|.+++|||.+...||+......|+|||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsy-SGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY-SGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccc-cccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            44556799999999999955 4788999999976 444444556889999999999999999999999999999999999


Q ss_pred             ccCCCChhhhcc
Q 040605          207 YLERGSLATNLS  218 (226)
Q Consensus       207 ~~~~g~L~~~l~  218 (226)
                      ||- |+-.|.|.
T Consensus       107 YCl-GSAsDlle  117 (948)
T KOG0577|consen  107 YCL-GSASDLLE  117 (948)
T ss_pred             HHh-ccHHHHHH
Confidence            996 67777654

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.27  E-value=3.4e-11  Score=92.81  Aligned_cols=91  Identities=31%  Similarity=0.464  Sum_probs=78.7

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+++|.+......   ...+.+.+|+..+.+++|+|++++.+++...+..++++
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE---EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            5667788999999999999776 5899999998652211   24678999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.+++...
T Consensus        79 e~~~~~~L~~~l~~~   93 (264)
T cd06623          79 EYMDGGSLADLLKKV   93 (264)
T ss_pred             EecCCCcHHHHHHHc
Confidence            999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.27  E-value=2.2e-11  Score=95.37  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=75.9

Q ss_pred             ccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      |...+.||+|+||.||.+..    .+|..+|+|.+............+.+.+|+.++.++ +|+||+++.+++......+
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            55667899999999999864    478899999986421111112346788999999999 5999999999998888999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +|+||+++|+|.++|....
T Consensus        82 lv~e~~~~~~L~~~l~~~~  100 (290)
T cd05613          82 LILDYINGGELFTHLSQRE  100 (290)
T ss_pred             EEEecCCCCcHHHHHHHcC
Confidence            9999999999999987543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.27  E-value=2.4e-11  Score=94.61  Aligned_cols=87  Identities=24%  Similarity=0.331  Sum_probs=71.6

Q ss_pred             eccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||+||++.. .+|..+|+|.+.... .........+..|++++..++|||++++.+.+...+..++|+||+++|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKR-LKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhh-hhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            68999999999965 478899999986411 1111234567889999999999999999999999999999999999999


Q ss_pred             hhhhccCCc
Q 040605          213 LATNLSNDA  221 (226)
Q Consensus       213 L~~~l~~~~  221 (226)
                      |.+++....
T Consensus        80 L~~~l~~~~   88 (277)
T cd05577          80 LKYHIYNVG   88 (277)
T ss_pred             HHHHHHHcC
Confidence            999987543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.27  E-value=4.6e-11  Score=93.22  Aligned_cols=90  Identities=27%  Similarity=0.413  Sum_probs=74.8

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+|+|.++....  +......+.+|+.++..++|+|++++++++..++..++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESE--EEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccc--cCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEE
Confidence            3566678999999999999764 789999999864211  1123467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||++ |+|.++++.
T Consensus        79 e~~~-~~l~~~~~~   91 (285)
T cd07861          79 EFLS-MDLKKYLDS   91 (285)
T ss_pred             ecCC-CCHHHHHhc
Confidence            9998 789988864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.27  E-value=2.4e-11  Score=94.71  Aligned_cols=91  Identities=24%  Similarity=0.452  Sum_probs=74.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||.||+|... +|.    .+|+|.+.....   ......+.+|+..+.+++|+|+++++++|.. +.
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   82 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ   82 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc
Confidence            34666678999999999999764 333    589998765211   2345789999999999999999999999987 78


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        83 ~~~v~e~~~~g~L~~~l~~~  102 (279)
T cd05057          83 VQLITQLMPLGCLLDYVRNH  102 (279)
T ss_pred             eEEEEecCCCCcHHHHHHhc
Confidence            89999999999999999764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.27  E-value=3.7e-11  Score=94.25  Aligned_cols=90  Identities=23%  Similarity=0.413  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++... ++..+++|.+..    .+....+.+.+|+.+++.++|+|++++.+++...+..++|
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIET----KSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIM   87 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEecc----CCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEE
Confidence            44666678999999999999765 588999999864    1223467899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++++|..++.+
T Consensus        88 ~e~~~~~~l~~~~~~  102 (292)
T cd06644          88 IEFCPGGAVDAIMLE  102 (292)
T ss_pred             EecCCCCcHHHHHHh
Confidence            999999999888754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.27  E-value=1.3e-11  Score=96.48  Aligned_cols=92  Identities=25%  Similarity=0.429  Sum_probs=76.4

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+..... . ....+.+.+|++++..++|+|++++++++..++..++|+
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~-~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESED-D-KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccC-c-chhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            4667788999999999999875 588999998764221 1 123467889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.++.+..
T Consensus        80 e~~~~~~l~~~~~~~   94 (286)
T cd07846          80 EFVDHTVLDDLEKYP   94 (286)
T ss_pred             ecCCccHHHHHHhcc
Confidence            999999998876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.27  E-value=2.5e-11  Score=98.60  Aligned_cols=92  Identities=20%  Similarity=0.322  Sum_probs=74.7

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----e
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----H  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----~  200 (226)
                      +|...+.||+|+||.||++.. .+|..||+|++...  ..+....+.+.+|++++..++|+||+++++++...+     .
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNV--FQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE   78 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEecccc--ccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence            366778899999999999975 47899999998642  122224567899999999999999999999998766     7


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++|+||++ ++|.+++....
T Consensus        79 ~~lv~e~~~-~~l~~~~~~~~   98 (372)
T cd07853          79 IYVVTELMQ-SDLHKIIVSPQ   98 (372)
T ss_pred             EEEEeeccc-cCHHHHHhcCC
Confidence            899999997 68888876543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=7.4e-13  Score=105.68  Aligned_cols=91  Identities=25%  Similarity=0.435  Sum_probs=73.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCC-eEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHAR-HSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~-~~~  202 (226)
                      ++|...+.||.|.||.||+++- .+|..||||+++.. - ..++ .--=++|+..|+++. ||||+++...+.+.+ ..+
T Consensus        10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~K-f-~s~e-e~~nLREvksL~kln~hpniikL~Evi~d~~~~L~   86 (538)
T KOG0661|consen   10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKK-F-YSWE-ECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILY   86 (538)
T ss_pred             HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhh-h-ccHH-HHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEe
Confidence            3455666799999999999965 57899999999751 1 2121 223469999999998 999999999998877 899


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +|||||+ .+|.+.+++.
T Consensus        87 fVfE~Md-~NLYqLmK~R  103 (538)
T KOG0661|consen   87 FVFEFMD-CNLYQLMKDR  103 (538)
T ss_pred             eeHHhhh-hhHHHHHhhc
Confidence            9999997 7999999865

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.27  E-value=5.5e-11  Score=91.94  Aligned_cols=94  Identities=33%  Similarity=0.457  Sum_probs=76.0

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCc-----hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQ-----IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      |.....||+|++|.||+|... ++..+|+|.+........     ....+.+.+|+.++.+++|+||+++.+++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            445568999999999999654 688999998864222111     11235688999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++++||+++++|.+++....
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~  101 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYG  101 (267)
T ss_pred             EEEEEecCCCCHHHHHHhcc
Confidence            99999999999999997543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.27  E-value=2.2e-11  Score=97.14  Aligned_cols=88  Identities=24%  Similarity=0.360  Sum_probs=68.2

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHH-HHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIE-ALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~-~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... ++..+|+|.+.... .........+..|.. ++..++|+||+++.+++...+..++||||+++
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKA-ILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHH-HHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            5899999999999765 67889999986411 111112334455544 56788999999999999999999999999999


Q ss_pred             CChhhhccCCc
Q 040605          211 GSLATNLSNDA  221 (226)
Q Consensus       211 g~L~~~l~~~~  221 (226)
                      |+|.++++...
T Consensus        81 ~~L~~~~~~~~   91 (325)
T cd05602          81 GELFYHLQRER   91 (325)
T ss_pred             CcHHHHHHhcC
Confidence            99999987543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.27  E-value=4.6e-11  Score=91.70  Aligned_cols=91  Identities=19%  Similarity=0.331  Sum_probs=76.9

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|++|.||++.. .++..+|+|.+... .. .....+.+.+|++++++++|+|++++++.+...+..++|+|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~-~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVE-QM-TKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEecc-cc-ccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            56677899999999999865 47889999998652 11 12245789999999999999999999999988899999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.++++..
T Consensus        80 ~~~~~~L~~~~~~~   93 (256)
T cd08220          80 YAPGGTLAEYIQKR   93 (256)
T ss_pred             cCCCCCHHHHHHHh
Confidence            99999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.26  E-value=2.6e-11  Score=93.74  Aligned_cols=84  Identities=20%  Similarity=0.390  Sum_probs=69.3

Q ss_pred             eeccCCceeEEEEEcCC-------------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          133 CIGNGGHGSVYKAELPS-------------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~-------------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .||+|+||.||+|...+             ...|++|.+...    .......|..|+.++..++||||+++++++....
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS----HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh----hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            58999999999997532             235888887541    1123567889999999999999999999999988


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++++||+++|+|..+++..
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~   98 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRK   98 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhc
Confidence            999999999999999988753

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.26  E-value=3.5e-11  Score=93.59  Aligned_cols=90  Identities=29%  Similarity=0.541  Sum_probs=75.2

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC---CCcccceeeEEEeCCeEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~~~~~~l  203 (226)
                      |...+.||+|+||.||+|.. .++..+|+|.+......   .....+.+|+.++++++   |+|++++++++...+..++
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPD---DDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCc---hhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEE
Confidence            45567899999999999976 57899999998642221   23567889999999886   9999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      +|||+++++|.++++..
T Consensus        80 v~e~~~~~~L~~~~~~~   96 (277)
T cd06917          80 IMEYAEGGSVRTLMKAG   96 (277)
T ss_pred             EEecCCCCcHHHHHHcc
Confidence            99999999999998653

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.26  E-value=2.1e-11  Score=95.70  Aligned_cols=93  Identities=24%  Similarity=0.428  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEcCC-----------------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcc
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS-----------------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI  188 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~-----------------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl  188 (226)
                      .+|...+.||+|+||.||++...+                 +..+|+|.+....   .......|.+|++++.+++|+|+
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA---SDNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCcc---CHHHHHHHHHHHHHHHhcCCCCE
Confidence            456777889999999999986532                 2468999986521   12345789999999999999999


Q ss_pred             cceeeEEEeCCeEEEEEEccCCCChhhhccCCc
Q 040605          189 VKFYGFCSHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       189 v~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++++++...+..++++||+++++|.++|....
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHV  114 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcc
Confidence            999999999899999999999999999997643

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.26  E-value=6.8e-11  Score=91.48  Aligned_cols=96  Identities=23%  Similarity=0.379  Sum_probs=76.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC-CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP-GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~-~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~  201 (226)
                      .+|...+.+|+|+||.||++... ++..+++|.+..... .........+.+|+.+++.++|+||+++.+++..  ....
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            46778889999999999999664 688999999864221 1112234678899999999999999999998865  3567


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++++||+++++|.++++...
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~  101 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG  101 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC
Confidence            89999999999999987543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.26  E-value=3.3e-11  Score=94.74  Aligned_cols=93  Identities=24%  Similarity=0.388  Sum_probs=76.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCC-chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGD-QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~-~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|++|.||+|... ++..+|+|.+....... .......+..|+.++.+++|+|++++++++...+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            555678999999999999764 68999999997522210 1113456788999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+ +|+|.++++...
T Consensus        82 e~~-~~~L~~~i~~~~   96 (298)
T cd07841          82 EFM-ETDLEKVIKDKS   96 (298)
T ss_pred             ccc-CCCHHHHHhccC
Confidence            999 899999997654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.26  E-value=2.1e-11  Score=94.54  Aligned_cols=92  Identities=30%  Similarity=0.502  Sum_probs=75.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC---
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA---  198 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~---  198 (226)
                      +++.|...+.||+|+||.||+|... ++..+|+|.+... ..    ....+.+|+.++.++ +|+|++++.+++...   
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GD----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   78 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC-Cc----cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC
Confidence            4556777788999999999999764 6889999998642 11    246788999999998 799999999998653   


Q ss_pred             ---CeEEEEEEccCCCChhhhccCC
Q 040605          199 ---RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ---~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                         ...+++|||+++|+|.+++...
T Consensus        79 ~~~~~~~iv~e~~~~~~L~~~l~~~  103 (272)
T cd06637          79 GMDDQLWLVMEFCGAGSVTDLIKNT  103 (272)
T ss_pred             CCCcEEEEEEEcCCCCcHHHHHHhc
Confidence               4578999999999999998753

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.26  E-value=3.7e-11  Score=92.49  Aligned_cols=86  Identities=29%  Similarity=0.426  Sum_probs=70.1

Q ss_pred             eeccCCceeEEEEEc---CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNGGHGSVYKAEL---PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~---~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|+||.||+|.+   .++..+|+|.++...  .+....+++..|+.+++.++|+|++++++++. .+..++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~   78 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN--NDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE   78 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC--CcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence            589999999999964   357889999986421  22234578999999999999999999999885 456789999999


Q ss_pred             CCChhhhccCCc
Q 040605          210 RGSLATNLSNDA  221 (226)
Q Consensus       210 ~g~L~~~l~~~~  221 (226)
                      +|+|.+++....
T Consensus        79 ~~~L~~~l~~~~   90 (257)
T cd05116          79 LGPLNKFLQKNK   90 (257)
T ss_pred             CCcHHHHHHhcC
Confidence            999999987543

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.26  E-value=2.4e-11  Score=96.57  Aligned_cols=87  Identities=26%  Similarity=0.413  Sum_probs=70.3

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      .||+|+||.||++... +|..+|+|.++..... .......+..|..++... +|+|++++++++...+..++||||+++
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVL-IDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            6899999999999765 6889999998642110 011345677788888754 899999999999999999999999999


Q ss_pred             CChhhhccCC
Q 040605          211 GSLATNLSND  220 (226)
Q Consensus       211 g~L~~~l~~~  220 (226)
                      |+|.+++...
T Consensus        81 g~L~~~i~~~   90 (316)
T cd05620          81 GDLMFHIQDK   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999988754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.25  E-value=3.3e-11  Score=92.91  Aligned_cols=88  Identities=24%  Similarity=0.431  Sum_probs=73.4

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +|.....||+|++|.||++....+..+|+|.+... . .   ..+.|.+|+.++.+++|+|++++.+++. .+..+++||
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~-~-~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   80 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG-T-M---MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTE   80 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccC-C-c---cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEE
Confidence            46666789999999999998877778999987641 1 1   2467899999999999999999998875 456889999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        81 ~~~~~~L~~~~~~~   94 (260)
T cd05069          81 FMGKGSLLDFLKEG   94 (260)
T ss_pred             cCCCCCHHHHHhhC
Confidence            99999999999753

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.25  E-value=3.9e-11  Score=93.66  Aligned_cols=87  Identities=23%  Similarity=0.413  Sum_probs=73.7

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|+||.||++... ++..+++|.+..    ......+.+.+|++++..++|+|++++.+++...+..++|+||
T Consensus         8 ~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~   83 (282)
T cd06643           8 EIIGELGDGAFGKVYKAQNKETGVLAAAKVIDT----KSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   83 (282)
T ss_pred             HHHhhcccCCCeEEEEEEECCCCeEEEEEEeCC----CCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEe
Confidence            34456999999999999765 577889998854    1223457899999999999999999999999999999999999


Q ss_pred             cCCCChhhhccC
Q 040605          208 LERGSLATNLSN  219 (226)
Q Consensus       208 ~~~g~L~~~l~~  219 (226)
                      +++|+|..+++.
T Consensus        84 ~~~~~l~~~~~~   95 (282)
T cd06643          84 CAGGAVDAVMLE   95 (282)
T ss_pred             cCCCcHHHHHHh
Confidence            999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.25  E-value=3.3e-11  Score=93.46  Aligned_cols=86  Identities=33%  Similarity=0.570  Sum_probs=70.7

Q ss_pred             eeccCCceeEEEEEcC-CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELP-SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      +||+|+||.||++... ++.  .+++|.+...   ......+.+.+|+.++.++ +|||++++++++...+..+++|||+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   78 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEcccc---CCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeC
Confidence            5899999999999875 343  4688887531   1122456789999999999 8999999999999999999999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.++++..+
T Consensus        79 ~~~~L~~~i~~~~   91 (270)
T cd05047          79 PHGNLLDFLRKSR   91 (270)
T ss_pred             CCCcHHHHHHhcc
Confidence            9999999997543

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.25  E-value=4.9e-11  Score=92.97  Aligned_cols=92  Identities=33%  Similarity=0.496  Sum_probs=75.4

Q ss_pred             CccccceeccCCceeEEEEEcC-----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CC
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--AR  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~  199 (226)
                      +|...+.||+|+||.||++.+.     .+..+|||.+......   ...+.|.+|+.+++.++|+|++++.+++..  ..
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE---QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch---HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            3555678999999999999753     3678999998652111   245789999999999999999999999877  55


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++++||+++|+|.++++...
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~  103 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHR  103 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCc
Confidence            7899999999999999997643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.25  E-value=7.9e-12  Score=101.72  Aligned_cols=91  Identities=26%  Similarity=0.437  Sum_probs=76.4

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|..-..||+|..|.||.+. ..++..||||++.. ..+.   ..+-..+|+.+|+..+|+|||.++..+...+++|+|
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l-~~Q~---~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV  348 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDL-RKQP---KKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV  348 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEe-ccCC---chhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence            345556689999999999994 45889999999975 2222   245678999999999999999999999989999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.+.+...
T Consensus       349 MEym~ggsLTDvVt~~  364 (550)
T KOG0578|consen  349 MEYMEGGSLTDVVTKT  364 (550)
T ss_pred             EeecCCCchhhhhhcc
Confidence            9999999999988654

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.25  E-value=3.6e-11  Score=92.08  Aligned_cols=85  Identities=39%  Similarity=0.582  Sum_probs=73.8

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      .||+|+||.||++...++..+++|.+.....   ......|.+|+.++++++|+||+++++++......++++||+++++
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLP---PDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             ccccCCCceEEEEEEeCCCcEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            5899999999999887799999998864211   1245789999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.++++..
T Consensus        79 l~~~l~~~   86 (251)
T cd05041          79 LLTFLRKK   86 (251)
T ss_pred             HHHHHHhc
Confidence            99999653

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.25  E-value=3.8e-11  Score=96.05  Aligned_cols=90  Identities=27%  Similarity=0.457  Sum_probs=71.8

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----CeE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----RHS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~~~  201 (226)
                      |...+.||+|+||.||++.. .++..||+|++.....  .......+.+|+.++++++||||+++.+++...     ...
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFE--HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhc--cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            55677899999999999975 4789999999864111  112346789999999999999999999988543     247


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||++ ++|.+++...
T Consensus        80 ~lv~e~~~-~~L~~~l~~~   97 (338)
T cd07859          80 YVVFELME-SDLHQVIKAN   97 (338)
T ss_pred             EEEEecCC-CCHHHHHHhc
Confidence            99999996 7899988754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.25  E-value=9.5e-12  Score=99.97  Aligned_cols=94  Identities=21%  Similarity=0.369  Sum_probs=76.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe-EEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH-SFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~-~~l  203 (226)
                      ++|...+++|+|+||.++....+ ++..+++|.+......  ....+...+|+.++++++|||||...+.+...+. .+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t--~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLT--EPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccC--chhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            34556678999999998877554 6779999998752222  2244578899999999999999999999998887 999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||+|+++|+|.+.|...+
T Consensus        82 vm~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQK   99 (426)
T ss_pred             EEeecCCCCHHHHHHHHh
Confidence            999999999999987654

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.25  E-value=4.1e-11  Score=94.76  Aligned_cols=92  Identities=27%  Similarity=0.409  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|...+.||+|+||.||++... ++..||+|.+... ........+.+.+|++++..++|||++++.+++...+..++|
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYS-GKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEecc-ccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            34666778999999999999764 6889999998642 222223446789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      +||++ |+|.+++..
T Consensus        94 ~e~~~-g~l~~~~~~  107 (307)
T cd06607          94 MEYCL-GSASDILEV  107 (307)
T ss_pred             HHhhC-CCHHHHHHH
Confidence            99997 678777653

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.25  E-value=5.1e-11  Score=93.77  Aligned_cols=91  Identities=25%  Similarity=0.421  Sum_probs=77.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||.|++|.||++.. .++..+++|.+.. ...   ...+.+.+|+.+++.++|+|++++++++...+..++|
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~-~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   94 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINL-QKQ---PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVV   94 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEec-ccC---chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEE
Confidence            3477778899999999999964 5789999999864 111   2356789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++.+.
T Consensus        95 ~e~~~~~~L~~~~~~~  110 (296)
T cd06655          95 MEYLAGGSLTDVVTET  110 (296)
T ss_pred             EEecCCCcHHHHHHhc
Confidence            9999999999988653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.24  E-value=6.8e-11  Score=91.06  Aligned_cols=91  Identities=32%  Similarity=0.451  Sum_probs=78.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.+|+|+||.||++... ++..+++|.+.....    ...+.+.+|+.++++++|+|++++.+++...+..+++
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~   78 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIV   78 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEE
Confidence            56777889999999999999764 678899999865211    1457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.+++...
T Consensus        79 ~e~~~~~~l~~~~~~~   94 (262)
T cd06613          79 MEYCGGGSLQDIYQVT   94 (262)
T ss_pred             EeCCCCCcHHHHHHhh
Confidence            9999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.8e-12  Score=99.32  Aligned_cols=83  Identities=31%  Similarity=0.431  Sum_probs=66.4

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--C---eE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--R---HS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~---~~  201 (226)
                      |...+++|+|+||.||+|.+. ++..||||+..++..        ---+|..+|+++.|||||+|.-++...  .   ..
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~l   97 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYL   97 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC--------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHH
Confidence            556689999999999999774 678999999876221        223789999999999999999888543  2   23


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      .+|+|||| -+|.++++.
T Consensus        98 nlVleymP-~tL~~~~r~  114 (364)
T KOG0658|consen   98 NLVLEYMP-ETLYRVIRH  114 (364)
T ss_pred             HHHHHhch-HHHHHHHHH
Confidence            58999999 589999884

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.24  E-value=2.6e-11  Score=96.17  Aligned_cols=92  Identities=25%  Similarity=0.443  Sum_probs=75.2

Q ss_pred             cCccccceeccCCceeEEEEEcC--------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||.||++...        ....+|+|.+....   .......+..|+.++..+ +|+||+++++++.
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~   88 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA---TDKDLADLISEMELMKLIGKHKNIINLLGVCT   88 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC---ChHHHHHHHHHHHHHHhccCCCCeeeEEEEEc
Confidence            45777789999999999998531        34578999876421   122456789999999999 6999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCC
Q 040605          197 HARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..+..++++||+++|+|.++++..
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~i~~~  112 (314)
T cd05099          89 QEGPLYVIVEYAAKGNLREFLRAR  112 (314)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhc
Confidence            888999999999999999999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.24  E-value=5.3e-11  Score=91.36  Aligned_cols=90  Identities=32%  Similarity=0.519  Sum_probs=75.2

Q ss_pred             cccceeccCCceeEEEEEcCC-----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELPS-----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~-----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ...+.||+|+||.||++...+     +..+|+|.+.....   ....+.+..|+..+..++|+|++++++++...+..++
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD---EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC---hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            345679999999999997653     47899999865211   1145789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      +|||+++++|.+++....
T Consensus        79 i~e~~~~~~l~~~~~~~~   96 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNR   96 (258)
T ss_pred             EEeccCCCCHHHHHHhhh
Confidence            999999999999987543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.24  E-value=1.5e-11  Score=95.19  Aligned_cols=85  Identities=29%  Similarity=0.531  Sum_probs=70.8

Q ss_pred             eeccCCceeEEEEEcCC-------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          133 CIGNGGHGSVYKAELPS-------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~-------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .||+|+||.||++...+       +..+|+|.+.....   ......|.+|+.+++.++||||+++++++...+..++++
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT---DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccc---hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            58999999999997532       25789998754211   123568999999999999999999999999888999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++|+..
T Consensus        79 e~~~~~~L~~~l~~~   93 (269)
T cd05044          79 ELMEGGDLLSYLRDA   93 (269)
T ss_pred             eccCCCcHHHHHHHh
Confidence            999999999999753

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.24  E-value=3.8e-11  Score=92.16  Aligned_cols=89  Identities=31%  Similarity=0.471  Sum_probs=77.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+++|.+...   .   ..+.+.+|++++++++|+|++++.+++...+..+++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~---~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~   76 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE---E---DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIV   76 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecH---H---HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEE
Confidence            56777788999999999999876 4789999998641   1   257899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++++|.++++..
T Consensus        77 ~e~~~~~~L~~~l~~~   92 (256)
T cd06612          77 MEYCGAGSVSDIMKIT   92 (256)
T ss_pred             EecCCCCcHHHHHHhC
Confidence            9999999999998653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.23  E-value=3.3e-11  Score=92.68  Aligned_cols=83  Identities=25%  Similarity=0.502  Sum_probs=68.3

Q ss_pred             eeccCCceeEEEEEcCCCC-----------eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          133 CIGNGGHGSVYKAELPSGE-----------FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~-----------~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      .||+|+||.||++...+..           .+++|.+... .   . ....|.+|+.+++.++|+|++++++++.. +..
T Consensus         2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~---~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSD-H---R-DSLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             cccccccceEEEEEEeccCCccccCCccceeeeeeccccc-h---h-hHHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            5899999999999775332           4777776541 1   1 15789999999999999999999999988 778


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++|+||+++|+|.++++...
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~   95 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHREK   95 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhhc
Confidence            99999999999999997643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.23  E-value=9.8e-11  Score=90.48  Aligned_cols=95  Identities=25%  Similarity=0.408  Sum_probs=76.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCC-CCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPL-PGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~-~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~  201 (226)
                      .+|...+.||+|+||.||++.. .++..+|+|.+.... ..........+.+|++++++++|+|++++++++...  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4677888999999999999975 468999999875321 112223456889999999999999999999998664  457


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++||+++++|.+++...
T Consensus        82 ~~v~e~~~~~~L~~~~~~~  100 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAY  100 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHc
Confidence            8999999999999998754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.23  E-value=1.1e-11  Score=95.42  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=69.9

Q ss_pred             eeccCCceeEEEEEcC-C-------CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          133 CIGNGGHGSVYKAELP-S-------GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~-------g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .||+|+||.||+|... .       ...+++|.+..    ......+.+..|+.++..++|||++++.+++..++..++|
T Consensus         2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDK----SHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCcccchhheeeeecccccccccccchhhHHhhcc----hhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            5899999999999653 2       23478887643    1122456889999999999999999999999998999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.++++..+
T Consensus        78 ~e~~~~g~L~~~l~~~~   94 (258)
T cd05078          78 QEYVKFGSLDTYLKKNK   94 (258)
T ss_pred             EecCCCCcHHHHHhcCC
Confidence            99999999999997643

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.23  E-value=5.9e-11  Score=92.81  Aligned_cols=93  Identities=27%  Similarity=0.453  Sum_probs=79.7

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      .++.|...+.+|+|++|.||++... ++..+++|.+.....     ....+..|++++..++|+|++++++++...+..+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   91 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW   91 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE
Confidence            3455666778999999999999876 688999999865211     3567899999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++||+++++|.++++...
T Consensus        92 lv~e~~~~~~L~~~l~~~~  110 (286)
T cd06614          92 VVMEYMDGGSLTDIITQNF  110 (286)
T ss_pred             EEEeccCCCcHHHHHHHhc
Confidence            9999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.23  E-value=4e-11  Score=92.57  Aligned_cols=91  Identities=31%  Similarity=0.406  Sum_probs=77.4

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+++|.+.....   ....+.+.+|++.+++++|+|++++.+.+...+..++++
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN---EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM   78 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC---hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence            4555678999999999999775 688999999865221   134578999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++++|.+++...
T Consensus        79 e~~~~~~L~~~~~~~   93 (265)
T cd06605          79 EYMDGGSLDKILKEV   93 (265)
T ss_pred             EecCCCcHHHHHHHc
Confidence            999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.23  E-value=6.9e-11  Score=92.65  Aligned_cols=91  Identities=21%  Similarity=0.292  Sum_probs=75.0

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      +.+|...+.||+|+||.||+|... ++..+|+|.+.......   ....+.+|+.++..++|+|++++.+++...+..++
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG---VPFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC---CcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            467888889999999999999764 78899999986422111   23467889999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      |+||++ ++|.+++..
T Consensus        81 v~e~~~-~~l~~~~~~   95 (291)
T cd07870          81 VFEYMH-TDLAQYMIQ   95 (291)
T ss_pred             EEeccc-CCHHHHHHh
Confidence            999996 788777654

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.23  E-value=6.3e-11  Score=104.73  Aligned_cols=93  Identities=20%  Similarity=0.449  Sum_probs=76.4

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHS  201 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~  201 (226)
                      .++|.....||+|+||.||++... .+..+|+|.+....  ........|..|+.++..++|||||++++++..  ....
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~--l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRG--LKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccc--cCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            357888889999999999999764 67789999886421  122245679999999999999999999998854  3568


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      +|||||+++|+|.++|..
T Consensus        90 yIVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHH
Confidence            999999999999999864

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.23  E-value=3.6e-11  Score=94.26  Aligned_cols=99  Identities=28%  Similarity=0.409  Sum_probs=80.2

Q ss_pred             ccHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceee
Q 040605          116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYG  193 (226)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g  193 (226)
                      +++.++..++++|...+.||+|+||.||++.. .++..+|+|.+... .    .....+.+|+.++.++ +|+|++++++
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~-~----~~~~~~~~e~~~l~~l~~h~ni~~~~~   86 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI-S----DVDEEIEAEYNILQSLPNHPNVVKFYG   86 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc-c----cHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            34455566778899999999999999999976 47889999998641 1    1245678899999998 8999999999


Q ss_pred             EEEeC-----CeEEEEEEccCCCChhhhccC
Q 040605          194 FCSHA-----RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       194 ~~~~~-----~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ++...     +..++|+||+++|+|.++++.
T Consensus        87 ~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~  117 (291)
T cd06639          87 MFYKADKLVGGQLWLVLELCNGGSVTELVKG  117 (291)
T ss_pred             EEEeccccCCCeeEEEEEECCCCcHHHHHHH
Confidence            98654     358999999999999998863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.23  E-value=2.4e-11  Score=94.46  Aligned_cols=94  Identities=24%  Similarity=0.308  Sum_probs=78.3

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|...+.||+|+||.||++... ++..+|+|.+... ........+.+..|..++.+++ |+|++++++++...+..+++
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKR-QLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechH-hccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            5667788999999999999765 7899999998641 1112223467889999999998 99999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++++|.+++...+
T Consensus        81 ~e~~~~~~L~~~l~~~~   97 (280)
T cd05581          81 LEYAPNGELLQYIRKYG   97 (280)
T ss_pred             EcCCCCCcHHHHHHHcC
Confidence            99999999999997653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.22  E-value=4e-11  Score=92.96  Aligned_cols=91  Identities=27%  Similarity=0.414  Sum_probs=73.0

Q ss_pred             cCccccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      .+|...+.||+|+||.||+|...+    ...+++|......   .....+.+.+|+.++++++|+|++++++++.. +..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~---~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~   81 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCT---SPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPV   81 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcC---CHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCc
Confidence            346677889999999999997543    2468999875421   12345689999999999999999999998864 557


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++||+++|+|.+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~  100 (270)
T cd05056          82 WIVMELAPLGELRSYLQVN  100 (270)
T ss_pred             EEEEEcCCCCcHHHHHHhC
Confidence            8999999999999999753

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.22  E-value=2.4e-11  Score=97.37  Aligned_cols=92  Identities=25%  Similarity=0.437  Sum_probs=73.6

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||++..      ..+..||+|+++...   .....+.+..|+.++.++ +|+||++++++|...
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~   83 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA---TASEYKALMTELKILIHIGHHLNVVNLLGACTKP   83 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCC---CHHHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence            4577778999999999999953      235789999986421   112346788999999999 899999999988654


Q ss_pred             -CeEEEEEEccCCCChhhhccCC
Q 040605          199 -RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                       ...++++||+++|+|.++|+..
T Consensus        84 ~~~~~~v~ey~~~~~L~~~i~~~  106 (337)
T cd05054          84 GGPLMVIVEYCKFGNLSNYLRSK  106 (337)
T ss_pred             CCCEEEEEecCCCCCHHHHHHhc
Confidence             5678999999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.22  E-value=2.9e-11  Score=103.71  Aligned_cols=94  Identities=27%  Similarity=0.496  Sum_probs=78.4

Q ss_pred             hcCccccceeccCCceeEEEEEcC----C----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP----S----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFC  195 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~----~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~  195 (226)
                      .+++...+.+|+|.||.|++|.+.    .    ...||||.++.....   ...+.+..|+.+|..+ +|+|++.++|+|
T Consensus       295 ~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~---~~~~~~~~El~~m~~~g~H~niv~llG~~  371 (609)
T KOG0200|consen  295 RENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS---SEKKDLMSELNVLKELGKHPNIVNLLGAC  371 (609)
T ss_pred             hhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc---HHHHHHHHHHHHHHHhcCCcchhhheeee
Confidence            344455558999999999999642    1    457999999763322   3578999999999998 699999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccCCc
Q 040605          196 SHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ...+..++|+||+++|+|.++|+..+
T Consensus       372 t~~~~~~~v~Ey~~~G~L~~~Lr~~r  397 (609)
T KOG0200|consen  372 TQDGPLYVIVEYAEHGDLLEFLRKKR  397 (609)
T ss_pred             ccCCceEEEEEeccCCcHHHHHHhcc
Confidence            99999999999999999999999776

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.22  E-value=8e-11  Score=91.26  Aligned_cols=88  Identities=22%  Similarity=0.455  Sum_probs=69.2

Q ss_pred             cccceeccCCceeEEEEEcCC-CC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------C
Q 040605          129 DAKYCIGNGGHGSVYKAELPS-GE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------R  199 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~-g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------~  199 (226)
                      .....||+|+||.||+|...+ +.  .+|+|.++...  ......+.|..|+.++..++|+||++++++|...      .
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAI--CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCc--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            345679999999999998753 33  58999876421  1223457899999999999999999999988532      2


Q ss_pred             eEEEEEEccCCCChhhhcc
Q 040605          200 HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~  218 (226)
                      ..++++||+++|+|.+++.
T Consensus        80 ~~~~v~e~~~~~~l~~~~~   98 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLL   98 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHH
Confidence            4689999999999999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.22  E-value=5.7e-11  Score=91.35  Aligned_cols=85  Identities=29%  Similarity=0.450  Sum_probs=71.1

Q ss_pred             eeccCCceeEEEEEcCC--C--CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELPS--G--EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~--g--~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .||+|++|.||++...+  +  ..+|+|.+......   ...+.+.+|+..+++++|+|++++++.+.. ...++++||+
T Consensus         2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~   77 (257)
T cd05040           2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS---DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELA   77 (257)
T ss_pred             cCCccCcccEEeeeEecCCCCceEEEEeecCCcccH---HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEec
Confidence            58999999999997642  3  36899998652211   356789999999999999999999999987 8899999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.+++.+..
T Consensus        78 ~~~~L~~~l~~~~   90 (257)
T cd05040          78 PLGSLLDRLRKDA   90 (257)
T ss_pred             CCCcHHHHHHhcc
Confidence            9999999997643

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.22  E-value=1.1e-10  Score=92.73  Aligned_cols=90  Identities=28%  Similarity=0.429  Sum_probs=73.8

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+|+|.+... ..........+.+|++++++++|+|++++++++...+..++|+|
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYS-GKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecC-CCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            555678999999999999764 6889999998642 22222344678999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |++ |+|.+++..
T Consensus       106 ~~~-g~l~~~~~~  117 (317)
T cd06635         106 YCL-GSASDLLEV  117 (317)
T ss_pred             CCC-CCHHHHHHH
Confidence            997 688887753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.22  E-value=5e-11  Score=93.05  Aligned_cols=91  Identities=30%  Similarity=0.442  Sum_probs=74.9

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+|+|.+.....  .......+.+|++++.+++|+|++++.+++...+..+++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE--TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   78 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEcccccc--ccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEe
Confidence            3666788999999999999764 789999998864221  1113357899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++ ++|.++++..
T Consensus        79 e~~~-~~l~~~~~~~   92 (284)
T cd07860          79 EFLH-QDLKKFMDAS   92 (284)
T ss_pred             eccc-cCHHHHHHhC
Confidence            9996 6899888653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.22  E-value=3.7e-11  Score=93.77  Aligned_cols=88  Identities=22%  Similarity=0.322  Sum_probs=73.2

Q ss_pred             ccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      |...+.||+|+||.||+|...      .+..||+|++....   .......|..|+.++..++||||+++++++...+..
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~   83 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA---EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPL   83 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCce
Confidence            444567999999999999653      35789999986421   122346789999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhcc
Q 040605          202 FLVYEYLERGSLATNLS  218 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~  218 (226)
                      ++++||+++++|.+++.
T Consensus        84 ~~~~e~~~~~~l~~~l~  100 (283)
T cd05091          84 SMIFSYCSHSDLHEFLV  100 (283)
T ss_pred             EEEEEcCCCCcHHHHHH
Confidence            99999999999999985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.21  E-value=5e-11  Score=95.39  Aligned_cols=91  Identities=25%  Similarity=0.434  Sum_probs=74.3

Q ss_pred             CccccceeccCCceeEEEEEcC--------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP--------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      +|...+.||+|+||.||++...        .+..+|+|.+...   ......+.+.+|+.++.++ +|+||+++.+++..
T Consensus        13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (334)
T cd05100          13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD---ATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ   89 (334)
T ss_pred             HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc---cCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc
Confidence            4666788999999999999531        1236899987641   1122457899999999999 89999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++++||+++|+|.++|...
T Consensus        90 ~~~~~lv~e~~~~g~L~~~l~~~  112 (334)
T cd05100          90 DGPLYVLVEYASKGNLREYLRAR  112 (334)
T ss_pred             CCceEEEEecCCCCcHHHHHHhc
Confidence            89999999999999999999753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.21  E-value=1e-10  Score=91.26  Aligned_cols=90  Identities=31%  Similarity=0.423  Sum_probs=75.8

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|++|.||++... +|..+++|++..... . ......+.+|+.++++++|+|++++++++......++|+|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~-~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRL-E-GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccc-c-chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            556678999999999999764 789999999865221 1 1235689999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+ +++|.++++..
T Consensus        80 ~~-~~~L~~~~~~~   92 (286)
T cd07832          80 YM-PSDLSEVLRDE   92 (286)
T ss_pred             cc-CCCHHHHHHhc
Confidence            99 99999998653

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.21  E-value=4.4e-11  Score=92.10  Aligned_cols=87  Identities=28%  Similarity=0.408  Sum_probs=73.2

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||.||++... +|..+++|.+... ........+.+.+|++++.+++|+|++++.+.+......++++||+++++
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKA-DMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecch-hhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            589999999999876 5899999998652 11112345789999999999999999999999999999999999999999


Q ss_pred             hhhhccCCc
Q 040605          213 LATNLSNDA  221 (226)
Q Consensus       213 L~~~l~~~~  221 (226)
                      |.+++++.+
T Consensus        80 L~~~l~~~~   88 (265)
T cd05579          80 LASLLENVG   88 (265)
T ss_pred             HHHHHHHcC
Confidence            999987643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.21  E-value=8.1e-11  Score=96.19  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .++..||+|....          ..+.+|+.++++++||||+++.+++......+++
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~----------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv  161 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR----------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLI  161 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh----------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEE
Confidence            5688889999999999999965 4788999997532          3578999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+. ++|.+++...
T Consensus       162 ~e~~~-~~L~~~l~~~  176 (391)
T PHA03212        162 LPRYK-TDLYCYLAAK  176 (391)
T ss_pred             EecCC-CCHHHHHHhc
Confidence            99996 7898888654

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.21  E-value=6.3e-11  Score=92.40  Aligned_cols=91  Identities=22%  Similarity=0.337  Sum_probs=70.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||.||+|... ++.    .+++|.+...   .......++..|+..+++++|+||+++++++. ...
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~   82 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR---SGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GAS   82 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc---cchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCc
Confidence            34666778999999999999763 454    4777776431   11123467888999999999999999999885 445


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        83 ~~~i~e~~~~gsL~~~l~~~  102 (279)
T cd05111          83 LQLVTQLSPLGSLLDHVRQH  102 (279)
T ss_pred             cEEEEEeCCCCcHHHHHHhc
Confidence            78899999999999999754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.21  E-value=8.8e-11  Score=91.68  Aligned_cols=89  Identities=30%  Similarity=0.455  Sum_probs=71.5

Q ss_pred             cccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeE
Q 040605          129 DAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~  201 (226)
                      ...+.||+|+||+||.+..     .++..+|+|.++....   ......|.+|++++++++|||++++.+++...  ...
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG---QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL   83 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence            5567899999999987642     3678999999865211   12356789999999999999999999988654  457


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      +++|||+++|+|.+++...
T Consensus        84 ~lv~e~~~~~~l~~~~~~~  102 (283)
T cd05080          84 QLIMEYVPLGSLRDYLPKH  102 (283)
T ss_pred             EEEecCCCCCCHHHHHHHc
Confidence            8999999999999998753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.20  E-value=9.8e-11  Score=90.27  Aligned_cols=85  Identities=25%  Similarity=0.485  Sum_probs=68.7

Q ss_pred             eeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEEEEEEc
Q 040605          133 CIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSFLVYEY  207 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~lv~e~  207 (226)
                      .||+|+||.||+|...    +...+|+|.+...   ......+.+.+|+.+++.++|||++++++++.. .+..++++||
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   78 (262)
T cd05058           2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI---TDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPY   78 (262)
T ss_pred             cccccCCceEEEEEEecCCCceEEEEEEecCcc---CCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEec
Confidence            5899999999999753    2357999987531   222345788999999999999999999998864 4567899999


Q ss_pred             cCCCChhhhccCC
Q 040605          208 LERGSLATNLSND  220 (226)
Q Consensus       208 ~~~g~L~~~l~~~  220 (226)
                      +++|+|.+++++.
T Consensus        79 ~~~~~L~~~~~~~   91 (262)
T cd05058          79 MKHGDLRNFIRSE   91 (262)
T ss_pred             CCCCCHHHHHHhc
Confidence            9999999999753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.20  E-value=9e-11  Score=90.17  Aligned_cols=85  Identities=33%  Similarity=0.637  Sum_probs=73.5

Q ss_pred             eeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .||+|+||.||++....    +..+++|.++......   ..+.+.+|++.+..++|+|++++++++......++++||+
T Consensus         2 ~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE---ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             ccccCCceEEEEEEEecCCCCCceEEeEeeccccchh---HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            58999999999997753    7899999987522111   3578999999999999999999999999989999999999


Q ss_pred             CCCChhhhccCC
Q 040605          209 ERGSLATNLSND  220 (226)
Q Consensus       209 ~~g~L~~~l~~~  220 (226)
                      ++|+|.+++...
T Consensus        79 ~~~~L~~~l~~~   90 (262)
T cd00192          79 EGGDLLDYLRKS   90 (262)
T ss_pred             cCCcHHHHHhhc
Confidence            999999999865

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.20  E-value=4.6e-11  Score=99.73  Aligned_cols=97  Identities=16%  Similarity=0.345  Sum_probs=69.4

Q ss_pred             HhcCccccceeccCCceeEEEEEc-----------------CCCCeEEEEEecCCCCCCc----------hhhHHHHHHH
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAEL-----------------PSGEFLAVKKFHSPLPGDQ----------IADQKEFLAE  176 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~-----------------~~g~~vavk~l~~~~~~~~----------~~~~~~~~~e  176 (226)
                      ..++|...+.||+|+||.||+|..                 ..+..||||++........          ....+.+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            356899999999999999999953                 2456899999864211100          0011234557


Q ss_pred             HHHHhcCCCCcc-----cceeeEEEe--------CCeEEEEEEccCCCChhhhccCC
Q 040605          177 IEALTKIRHRNI-----VKFYGFCSH--------ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       177 ~~~l~~l~h~nl-----v~l~g~~~~--------~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +.++.+++|.++     ++++++|..        .+..++||||+++|+|.++|+..
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~  279 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK  279 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence            777888876655     677888753        35689999999999999999853

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.20  E-value=5.8e-11  Score=92.92  Aligned_cols=94  Identities=19%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             ccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      |...+.||+|++|.||++..    .++..+|||.++...........+.+.+|+.++.++ +|+|++++.+.+......+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            55567899999999999864    357889999986421111122346788999999999 5999999999998888999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.+++....
T Consensus        82 lv~e~~~~~~L~~~~~~~~  100 (288)
T cd05583          82 LILDYVNGGELFTHLYQRE  100 (288)
T ss_pred             EEEecCCCCcHHHHHhhcC
Confidence            9999999999999987543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.20  E-value=5.4e-11  Score=93.44  Aligned_cols=84  Identities=26%  Similarity=0.416  Sum_probs=72.2

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ..||+|+||.||++... ++..+|+|.+...    .....+.+.+|+..+..++|+|++++++.+...+..+++|||+++
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLR----KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecc----hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            46999999999999764 6889999998541    122456789999999999999999999999999999999999999


Q ss_pred             CChhhhccC
Q 040605          211 GSLATNLSN  219 (226)
Q Consensus       211 g~L~~~l~~  219 (226)
                      ++|.+++..
T Consensus       104 ~~L~~~~~~  112 (292)
T cd06658         104 GALTDIVTH  112 (292)
T ss_pred             CcHHHHHhc
Confidence            999998854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.20  E-value=4.8e-11  Score=91.75  Aligned_cols=88  Identities=32%  Similarity=0.488  Sum_probs=72.2

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|+||+||++... ++..+|+|.+... . ..........+|+..+.+++|+||+++.+++......+++|||
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~-~-~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKS-E-IEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEEST-T-HHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccc-c-ccccccchhhhhhhccccccccccccccccccccccccccccc
Confidence            34578999999999999775 5668999999752 1 1111223445699999999999999999999999999999999


Q ss_pred             cCCCChhhhcc
Q 040605          208 LERGSLATNLS  218 (226)
Q Consensus       208 ~~~g~L~~~l~  218 (226)
                      +++++|.++|.
T Consensus        80 ~~~~~L~~~l~   90 (260)
T PF00069_consen   80 CPGGSLQDYLQ   90 (260)
T ss_dssp             ETTEBHHHHHH
T ss_pred             ccccccccccc
Confidence            99999999987

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.19  E-value=7.5e-11  Score=92.15  Aligned_cols=91  Identities=30%  Similarity=0.465  Sum_probs=74.9

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|...+.||+|++|.||++... ++..+++|.++....  .......+.+|++++++++|+|++++++++...+..++++
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESED--DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcc--cccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            4667788999999999999775 678999998864211  1123467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||++++.+..++..
T Consensus        80 e~~~~~~l~~~~~~   93 (288)
T cd07833          80 EYVERTLLELLEAS   93 (288)
T ss_pred             ecCCCCHHHHHHhc
Confidence            99998777766544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.19  E-value=4.9e-11  Score=101.54  Aligned_cols=88  Identities=23%  Similarity=0.370  Sum_probs=72.9

Q ss_pred             CccccceeccCCceeEEEEEcCCC-CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceee-EEEe---C--
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSG-EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYG-FCSH---A--  198 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g-~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g-~~~~---~--  198 (226)
                      .....++|.+|||+.||.+....+ ..+|+|++-.    .+....+...+|+++|+.++ |+|||.+++ ....   .  
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~----~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~  113 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYV----NDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNG  113 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeec----CCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCc
Confidence            456678999999999999987655 9999999864    24456789999999999996 999999998 3321   1  


Q ss_pred             -CeEEEEEEccCCCChhhhcc
Q 040605          199 -RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~  218 (226)
                       -+.+|.||||++|+|-|++.
T Consensus       114 ~~EvllLmEyC~gg~Lvd~mn  134 (738)
T KOG1989|consen  114 VWEVLLLMEYCKGGSLVDFMN  134 (738)
T ss_pred             eeEEEeehhhccCCcHHHHHH
Confidence             25789999999999999986

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.19  E-value=7.8e-11  Score=94.42  Aligned_cols=91  Identities=25%  Similarity=0.343  Sum_probs=71.9

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCC----------CchhhHHHHHHHHHHHhcCCCCcccceee
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPG----------DQIADQKEFLAEIEALTKIRHRNIVKFYG  193 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~----------~~~~~~~~~~~e~~~l~~l~h~nlv~l~g  193 (226)
                      .+.|.....||+|.||.|-.+.. .++..||||.+.+....          ......+...+|+.+|++++|+|||+|+.
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiE  175 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIE  175 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEE
Confidence            36788888999999999999965 48899999998642100          00012357899999999999999999999


Q ss_pred             EEEeC--CeEEEEEEccCCCChhh
Q 040605          194 FCSHA--RHSFLVYEYLERGSLAT  215 (226)
Q Consensus       194 ~~~~~--~~~~lv~e~~~~g~L~~  215 (226)
                      +..++  +..|||+|||..|.+..
T Consensus       176 vLDDP~s~~~YlVley~s~G~v~w  199 (576)
T KOG0585|consen  176 VLDDPESDKLYLVLEYCSKGEVKW  199 (576)
T ss_pred             eecCcccCceEEEEEeccCCcccc
Confidence            98765  57899999999988654

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.19  E-value=2e-10  Score=87.94  Aligned_cols=92  Identities=29%  Similarity=0.430  Sum_probs=77.8

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSFLV  204 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~lv  204 (226)
                      |...+.||+|++|.||++... ++..+++|.+......  ....+.+.+|+..+++++|+|++++.+.+...  ...+++
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS--EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            556678999999999999775 7889999998652211  23467899999999999999999999999888  889999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++++|.+++....
T Consensus        80 ~e~~~~~~L~~~~~~~~   96 (260)
T cd06606          80 LEYVSGGSLSSLLKKFG   96 (260)
T ss_pred             EEecCCCcHHHHHHHcC
Confidence            99999999999987543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=8.7e-12  Score=98.70  Aligned_cols=93  Identities=25%  Similarity=0.379  Sum_probs=79.8

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|+....||+|.||.||+|.. ..+..||+|.+.......   ...+..+|+.++.+.+++||.+.+|.+..+...+++|
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d---eIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM   90 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED---EIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM   90 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcch---hhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence            355557899999999999965 478899999997633222   4678899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCcc
Q 040605          206 EYLERGSLATNLSNDAA  222 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~~  222 (226)
                      |||.+|++.+.|.....
T Consensus        91 ey~~gGsv~~lL~~~~~  107 (467)
T KOG0201|consen   91 EYCGGGSVLDLLKSGNI  107 (467)
T ss_pred             HHhcCcchhhhhccCCC
Confidence            99999999999986655

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.19  E-value=1.5e-10  Score=90.88  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|++|.||++... +|..+|+|.+.....  .......+.+|++++++++|+|++++++++...+..++|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQE--DEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccc--cccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence            35777789999999999999765 788999999864211  112346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      +||++ ++|.+++..
T Consensus        80 ~e~~~-~~l~~~~~~   93 (294)
T PLN00009         80 FEYLD-LDLKKHMDS   93 (294)
T ss_pred             Eeccc-ccHHHHHHh
Confidence            99996 688887754

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.19  E-value=1.1e-10  Score=91.08  Aligned_cols=89  Identities=22%  Similarity=0.399  Sum_probs=71.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHH-HhcCCCCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEA-LTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~-l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|...+.||+|+||.||++... +|..||+|+++.....   .....+..|... ++..+|+|++++++++...+..+++
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS---QEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc---HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            5777788999999999999764 7899999998652211   123456667665 5667899999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      +||++ |+|.++++.
T Consensus        79 ~e~~~-~~l~~~l~~   92 (283)
T cd06617          79 MEVMD-TSLDKFYKK   92 (283)
T ss_pred             hhhhc-ccHHHHHHH
Confidence            99997 788887764

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.18  E-value=1.8e-10  Score=89.18  Aligned_cols=91  Identities=22%  Similarity=0.471  Sum_probs=73.0

Q ss_pred             ccccceeccCCceeEEEEEcCC--CCeEEEEEecCCCC------CCchhhHHHHHHHHHHHhc-CCCCcccceeeEEEeC
Q 040605          128 FDAKYCIGNGGHGSVYKAELPS--GEFLAVKKFHSPLP------GDQIADQKEFLAEIEALTK-IRHRNIVKFYGFCSHA  198 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~--g~~vavk~l~~~~~------~~~~~~~~~~~~e~~~l~~-l~h~nlv~l~g~~~~~  198 (226)
                      |...+.||+|+||.||++....  +..+|+|.+.....      .........+..|+.++.+ ++|+|++++++++...
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   81 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN   81 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence            5566789999999999998754  67899998753111      1122234668889988875 7999999999999999


Q ss_pred             CeEEEEEEccCCCChhhhcc
Q 040605          199 RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~  218 (226)
                      +..+++|||+++++|.+++.
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~  101 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFN  101 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHH
Confidence            99999999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.18  E-value=1.3e-10  Score=89.42  Aligned_cols=85  Identities=32%  Similarity=0.445  Sum_probs=69.2

Q ss_pred             eeccCCceeEEEEEcC--C--CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELP--S--GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~--~--g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .||+|+||.||+|...  +  +..+|+|.+......   ...+.+.+|+.++.++.|+|++++++++. .+..+++|||+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   77 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA---AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELA   77 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeC
Confidence            5899999999999653  2  268999998652211   24568999999999999999999999876 45679999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.++|+...
T Consensus        78 ~~~~L~~~l~~~~   90 (257)
T cd05060          78 PLGPLLKYLKKRR   90 (257)
T ss_pred             CCCcHHHHHHhCC
Confidence            9999999997644

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.18  E-value=1.2e-10  Score=89.62  Aligned_cols=88  Identities=30%  Similarity=0.517  Sum_probs=73.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEE-eCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCS-HARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~-~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .|..+++|.++..   .   ..+.|.+|+.++++++|+|++++.+++. ..+..+++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~---~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv   78 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND---A---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   78 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC---c---hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEE
Confidence            3567778899999999999976 4788999988541   1   2467999999999999999999999865 45678999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.++++..
T Consensus        79 ~e~~~~~~L~~~~~~~   94 (256)
T cd05082          79 TEYMAKGSLVDYLRSR   94 (256)
T ss_pred             EECCCCCcHHHHHHhc
Confidence            9999999999998754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.18  E-value=6.8e-11  Score=90.81  Aligned_cols=86  Identities=29%  Similarity=0.529  Sum_probs=72.5

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +|...+.||+|+||.||++.. .+..+|+|.++..   .   ....+.+|+.++.+++|+|++++.+++... ..+++||
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~---~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e   78 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD---V---TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVME   78 (254)
T ss_pred             HceeeeeeccCCCCceEeccc-CCCceEEEeecCc---c---hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEE
Confidence            466778899999999999875 6788999998641   1   246799999999999999999999988654 4789999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus        79 ~~~~~~L~~~l~~~   92 (254)
T cd05083          79 LMSKGNLVNFLRTR   92 (254)
T ss_pred             CCCCCCHHHHHHhc
Confidence            99999999999754

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.18  E-value=1.8e-10  Score=89.72  Aligned_cols=91  Identities=23%  Similarity=0.425  Sum_probs=73.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||.||+|.. .+|.    .||+|.+...   ......+.+.+|+.++..++|+|++++++++.. ..
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~   82 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLREN---TSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-ST   82 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCC---CCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CC
Confidence            4577778999999999999964 3554    4899988642   222345789999999999999999999999975 45


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        83 ~~l~~~~~~~g~l~~~l~~~  102 (279)
T cd05109          83 VQLVTQLMPYGCLLDYVREN  102 (279)
T ss_pred             cEEEEEcCCCCCHHHHHhhc
Confidence            77999999999999999764

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.18  E-value=1.3e-10  Score=97.71  Aligned_cols=93  Identities=25%  Similarity=0.261  Sum_probs=75.0

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----  199 (226)
                      ..+|...+.||+|+||+||++.. .+|..||||.+....  ........+.+|+..+..++|+|++++...+...+    
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~--~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEG--MSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEeccc--CCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            35788889999999999999965 478999999986521  12234567889999999999999999887764332    


Q ss_pred             ----eEEEEEEccCCCChhhhccC
Q 040605          200 ----HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ----~~~lv~e~~~~g~L~~~l~~  219 (226)
                          ..++||||+++|+|.++|+.
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~  132 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKS  132 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHH
Confidence                36799999999999999864

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.18  E-value=1.3e-10  Score=90.68  Aligned_cols=100  Identities=28%  Similarity=0.447  Sum_probs=80.1

Q ss_pred             ccHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceee
Q 040605          116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYG  193 (226)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g  193 (226)
                      .++.++..+.+.|.....+|+|+||.||++.. .++..+|+|.+...     ......+..|+.++.++ +|+|++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~   80 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-----EDEEEEIKLEINMLKKYSHHRNIATYYG   80 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC-----hHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence            34556666677888888999999999999976 46889999987541     11345788999999998 7999999999


Q ss_pred             EEEe------CCeEEEEEEccCCCChhhhccCC
Q 040605          194 FCSH------ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       194 ~~~~------~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++..      ....+++|||+++|+|.+++...
T Consensus        81 ~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~  113 (282)
T cd06636          81 AFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNT  113 (282)
T ss_pred             ehhcccccCCCCEEEEEEEeCCCCcHHHHHHHc
Confidence            9853      35689999999999999998653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.18  E-value=2e-10  Score=90.22  Aligned_cols=84  Identities=27%  Similarity=0.466  Sum_probs=72.3

Q ss_pred             ceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          132 YCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ..||+|+||.||++.. .++..+|+|++...    .......+.+|+.+++.++|+|++++++++...+..+++|||+++
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  101 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG  101 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEeccc----chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCC
Confidence            4699999999999976 47899999987531    112356799999999999999999999999999999999999999


Q ss_pred             CChhhhccC
Q 040605          211 GSLATNLSN  219 (226)
Q Consensus       211 g~L~~~l~~  219 (226)
                      ++|.+++..
T Consensus       102 ~~L~~~~~~  110 (292)
T cd06657         102 GALTDIVTH  110 (292)
T ss_pred             CcHHHHHhc
Confidence            999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.18  E-value=9.1e-11  Score=92.39  Aligned_cols=84  Identities=25%  Similarity=0.389  Sum_probs=72.0

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ..||+|+||.||++... ++..+|+|.+... ..   ...+.+.+|+..+..++|||++++++++...+..++++||+++
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLR-KQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEec-cc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            46999999999999764 7899999998641 11   1346788999999999999999999999999999999999999


Q ss_pred             CChhhhccC
Q 040605          211 GSLATNLSN  219 (226)
Q Consensus       211 g~L~~~l~~  219 (226)
                      ++|.+++..
T Consensus       103 ~~L~~~~~~  111 (297)
T cd06659         103 GALTDIVSQ  111 (297)
T ss_pred             CCHHHHHhh
Confidence            999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.17  E-value=2.2e-10  Score=88.18  Aligned_cols=90  Identities=26%  Similarity=0.487  Sum_probs=73.2

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLV  204 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~lv  204 (226)
                      |...+.||.|+||.||++.. .++..+|+|.+... . ......+.+..|+.++++++|+|++++++++..  ....+++
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~-~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYG-N-MTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecc-c-CCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            55667899999999999965 47889999998642 1 122245678899999999999999999998754  3567899


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      +||+++++|.+++..
T Consensus        80 ~e~~~~~~L~~~l~~   94 (265)
T cd08217          80 MEYCEGGDLAQLIQK   94 (265)
T ss_pred             ehhccCCCHHHHHHH
Confidence            999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.17  E-value=3.1e-11  Score=97.83  Aligned_cols=92  Identities=23%  Similarity=0.358  Sum_probs=77.3

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |..++.||+|.|+.|-.++. -+|..||||++.+ ...+ ......+..|++.|+-++|||||+|+.+..+....|||+|
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDK-TKlD-~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDK-TKLD-TLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEecc-cccc-hhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            56667899999999887743 3899999999976 2222 2245678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      .-++|+|++||-.+.
T Consensus        98 LGD~GDl~DyImKHe  112 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHE  112 (864)
T ss_pred             ecCCchHHHHHHhhh
Confidence            999999999997653

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=1.3e-10  Score=89.99  Aligned_cols=91  Identities=30%  Similarity=0.451  Sum_probs=76.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCC--
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHAR--  199 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~--  199 (226)
                      ++++|...+.||+|++|.||++... ++..+++|.+... .    .....+.+|+.++.++ .|+|++++++++....  
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~-~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDII-E----DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP   78 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecC-c----hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC
Confidence            4577888899999999999999774 6789999998651 1    1346799999999999 7999999999997644  


Q ss_pred             ----eEEEEEEccCCCChhhhccC
Q 040605          200 ----HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ----~~~lv~e~~~~g~L~~~l~~  219 (226)
                          ..+++|||+++++|.++++.
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~~~  102 (275)
T cd06608          79 GNDDQLWLVMELCGGGSVTDLVKG  102 (275)
T ss_pred             CcceEEEEEEEcCCCCcHHHHHHH
Confidence                48999999999999998864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=3.5e-10  Score=86.59  Aligned_cols=91  Identities=30%  Similarity=0.485  Sum_probs=77.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|.+|.+|++... ++..+++|.+.... .. ......+.+|++++.+++|+|++++.+++...+..++++|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEK-IK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccc-cC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            556678999999999999664 67899999987522 11 1245789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.+++...
T Consensus        80 ~~~~~~L~~~~~~~   93 (254)
T cd06627          80 YAENGSLRQIIKKF   93 (254)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999998754

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=9.9e-11  Score=93.54  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=67.7

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC---CCCcccceeeEEEeCCeEEEEEEccC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI---RHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      ||+|+||.||++... ++..+|+|.+... ..........+..|..++...   +||||+++.+++...+..++||||++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKK-EIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHH-HHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence            699999999999764 6899999998531 111111234456677776655   69999999999999999999999999


Q ss_pred             CCChhhhccCCc
Q 040605          210 RGSLATNLSNDA  221 (226)
Q Consensus       210 ~g~L~~~l~~~~  221 (226)
                      +|+|.+++....
T Consensus        80 ~g~L~~~l~~~~   91 (330)
T cd05586          80 GGELFWHLQKEG   91 (330)
T ss_pred             CChHHHHHHhcC
Confidence            999999887543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.17  E-value=2.5e-11  Score=98.54  Aligned_cols=100  Identities=27%  Similarity=0.310  Sum_probs=80.4

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      ..+|...+.||+|+|.+|++++. ..+..+|||++.+. -.-.....+-..+|-.+|.++ .||.|++|.--+.+...+|
T Consensus        72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~-~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKR-YIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             hhhcchhheeccccceeEEEeeecCCCceeeHhhhhHH-HHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            35677788999999999999965 47899999998641 111111234467888899999 8999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCccccC
Q 040605          203 LVYEYLERGSLATNLSNDAAAEE  225 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~~~~~  225 (226)
                      .|+||++||+|.++|+.-+..++
T Consensus       151 FvLe~A~nGdll~~i~K~Gsfde  173 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKYGSFDE  173 (604)
T ss_pred             EEEEecCCCcHHHHHHHhCcchH
Confidence            99999999999999997765543

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.17  E-value=1.9e-11  Score=86.47  Aligned_cols=88  Identities=27%  Similarity=0.398  Sum_probs=71.3

Q ss_pred             cccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|.+|+|++++- ..++.||+|+++.+.  ++..-..+.++|+.+++.++|.|||++++...+++..-+|+||
T Consensus         5 dkmekigegtygtvfkarn~~t~eivalkrvrldd--ddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    5 DKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             HHHHhhcCCcceeeEecccCCccceEEEEEEeccC--CCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            3345699999999999965 478899999997522  2223456789999999999999999999999999999999999


Q ss_pred             cCCCChhhhccC
Q 040605          208 LERGSLATNLSN  219 (226)
Q Consensus       208 ~~~g~L~~~l~~  219 (226)
                      |. .+|..|..+
T Consensus        83 cd-qdlkkyfds   93 (292)
T KOG0662|consen   83 CD-QDLKKYFDS   93 (292)
T ss_pred             hh-HHHHHHHHh
Confidence            96 567766543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.17  E-value=2.2e-10  Score=91.88  Aligned_cols=89  Identities=19%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcC--CCCeEEEEEecCCCCC-CchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP--SGEFLAVKKFHSPLPG-DQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~--~g~~vavk~l~~~~~~-~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ..++|...+.||+|+||+||++...  ++..+|||++...... .+....+.|.+|+++|.+++|+|+++.+..   .+.
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~   92 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGK   92 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCC
Confidence            3467888899999999999999664  5778899987531110 111235679999999999999999964322   245


Q ss_pred             EEEEEEccCCCChhh
Q 040605          201 SFLVYEYLERGSLAT  215 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~  215 (226)
                      .++||||+++++|..
T Consensus        93 ~~LVmE~~~G~~L~~  107 (365)
T PRK09188         93 DGLVRGWTEGVPLHL  107 (365)
T ss_pred             cEEEEEccCCCCHHH
Confidence            799999999999973

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.16  E-value=3.1e-10  Score=88.83  Aligned_cols=88  Identities=27%  Similarity=0.408  Sum_probs=74.5

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +...+.||+|++|.||++.. .++..+++|++...    .....+.+.+|+.++..++|+|++++++++...+..++++|
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~----~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR----KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc----chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            34446899999999999975 47889999988541    11234668899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++++|.+++..
T Consensus        97 ~~~~~~L~~~~~~  109 (285)
T cd06648          97 FLEGGALTDIVTH  109 (285)
T ss_pred             ccCCCCHHHHHHh
Confidence            9999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.15  E-value=4.3e-10  Score=89.23  Aligned_cols=90  Identities=28%  Similarity=0.426  Sum_probs=73.0

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||+|... ++..+++|.+... ........+.+..|+++++.++|+|++++.+++......++++|
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYS-GKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEecc-ccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            444467999999999999764 7889999998642 22222244678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |++ |+|.+++..
T Consensus       102 ~~~-~~l~~~l~~  113 (313)
T cd06633         102 YCL-GSASDLLEV  113 (313)
T ss_pred             cCC-CCHHHHHHh
Confidence            996 688887754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.15  E-value=4e-10  Score=86.37  Aligned_cols=91  Identities=24%  Similarity=0.465  Sum_probs=77.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+++|++....  ........+..|++.++.++|+|++++.+.+...+..++++|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSN--MSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeeccc--CChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            556678999999999999765 68899999986521  112345778999999999999999999999988899999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.++++..
T Consensus        80 ~~~~~~L~~~l~~~   93 (258)
T cd08215          80 YADGGDLSQKIKKQ   93 (258)
T ss_pred             ecCCCcHHHHHHHh
Confidence            99999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.15  E-value=5e-10  Score=85.45  Aligned_cols=89  Identities=34%  Similarity=0.545  Sum_probs=77.2

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|++|.||++... ++..+++|++.....    .....+.+|++.+++++|+|++++.+++...+..++++|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e   77 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVME   77 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEe
Confidence            556678999999999999875 788999999865221    245789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++++|.+++...
T Consensus        78 ~~~~~~L~~~~~~~   91 (253)
T cd05122          78 FCSGGSLKDLLKST   91 (253)
T ss_pred             cCCCCcHHHHHhhc
Confidence            99999999998764

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.15  E-value=2.8e-10  Score=90.86  Aligned_cols=86  Identities=22%  Similarity=0.297  Sum_probs=71.7

Q ss_pred             eeccC--CceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNG--GHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g--~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|  +|++||.+.. .+|+.||+|.+... ... ....+.+.+|+.++..++||||+++++++...+..++++||++
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~-~~~-~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLE-NCT-EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccc-cCC-HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            46666  8999999976 47999999998652 111 2235788999999999999999999999999999999999999


Q ss_pred             CCChhhhccCC
Q 040605          210 RGSLATNLSND  220 (226)
Q Consensus       210 ~g~L~~~l~~~  220 (226)
                      +|+|.+++...
T Consensus        83 ~~~l~~~l~~~   93 (328)
T cd08226          83 YGSANSLLKTY   93 (328)
T ss_pred             CCCHHHHHHhh
Confidence            99999998753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.14  E-value=2.9e-10  Score=88.19  Aligned_cols=88  Identities=28%  Similarity=0.448  Sum_probs=69.7

Q ss_pred             cccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          129 DAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      ...+.||+|+||.||++...    .+..+|+|.+....  ......+.+.+|+.++++++|||++++++++...+     
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           2 TLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADI--FSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             cchhcccCCCCCCEEeeEeeccCCCceEEEEEEecccc--CChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            44567999999999999753    36789999986421  22224567899999999999999999999886532     


Q ss_pred             -eEEEEEEccCCCChhhhcc
Q 040605          200 -HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~  218 (226)
                       ..++++||+++|+|.+++.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~   99 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLL   99 (273)
T ss_pred             cceEEEEecCCCCcHHHHHH
Confidence             3478999999999998875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.14  E-value=2e-10  Score=91.81  Aligned_cols=97  Identities=24%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-  197 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-  197 (226)
                      ++...+++|...+.||+|+||.||++... ++..+|+|++......  ....+.+..|+.++..++|||++++.+++.. 
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   81 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST--PVLAKRTYRELKLLKHLRHENIISLSDIFISP   81 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccc--cchhHHHHHHHHHHHhcCCCCeeeEeeeEecC
Confidence            34456678888899999999999999654 7899999988642211  1234678899999999999999999998865 


Q ss_pred             CCeEEEEEEccCCCChhhhccC
Q 040605          198 ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      .+..++++||+. ++|.++++.
T Consensus        82 ~~~~~lv~e~~~-~~L~~~~~~  102 (328)
T cd07856          82 LEDIYFVTELLG-TDLHRLLTS  102 (328)
T ss_pred             CCcEEEEeehhc-cCHHHHHhc
Confidence            457889999994 789888864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.14  E-value=3.4e-10  Score=86.95  Aligned_cols=90  Identities=21%  Similarity=0.304  Sum_probs=73.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~lv~  205 (226)
                      |...+.||+|++|.||.+... ++..+|+|.+....  ......+.+.+|++++++++|+|++++.+.+.. ....+++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRN--ASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhh--cCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            566788999999999999764 67899999986411  112235678999999999999999999988764 44678999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++++|.++++.
T Consensus        80 e~~~~~~l~~~l~~   93 (257)
T cd08223          80 GFCEGGDLYHKLKE   93 (257)
T ss_pred             cccCCCcHHHHHHH
Confidence            99999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.14  E-value=1.7e-10  Score=88.29  Aligned_cols=86  Identities=27%  Similarity=0.376  Sum_probs=72.8

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|+||.||++... ++..+++|.+... ..........+..|+.+++.++|+|++++++.+...+..+++|||+++++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKK-KIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehh-hhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            689999999999765 6889999998652 22222245688999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.+++...
T Consensus        80 L~~~l~~~   87 (250)
T cd05123          80 LFSHLSKE   87 (250)
T ss_pred             HHHHHHhc
Confidence            99998754

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.14  E-value=3e-10  Score=89.46  Aligned_cols=93  Identities=31%  Similarity=0.475  Sum_probs=74.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC---
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR---  199 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~---  199 (226)
                      ..++|...+.||+|+||.||+|... +|..+|+|.++......  .....+.+|+.++++++|||++++.+++....   
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~   82 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE--GFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL   82 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccccc--CchHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence            3466888889999999999999775 68899999986522111  13457788999999999999999999987654   


Q ss_pred             -------eEEEEEEccCCCChhhhccC
Q 040605          200 -------HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 -------~~~lv~e~~~~g~L~~~l~~  219 (226)
                             ..++++||+++ +|.+.+..
T Consensus        83 ~~~~~~~~~~lv~e~~~~-~l~~~l~~  108 (302)
T cd07864          83 DFKKDKGAFYLVFEYMDH-DLMGLLES  108 (302)
T ss_pred             hccccCCcEEEEEcccCc-cHHHHHhc
Confidence                   78999999985 77777664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.14  E-value=2.7e-10  Score=88.88  Aligned_cols=90  Identities=28%  Similarity=0.427  Sum_probs=73.9

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|++|.||++... +|..+|+|++.....  .......+.+|++.++.++|+|++++.+++...+..+++|||
T Consensus         2 ~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           2 QKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETE--DEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             chheEecCCCCeEEEEEEEcCCCCEEEEEEeecccc--cccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEec
Confidence            44567999999999999764 799999999864211  111345788999999999999999999999999999999999


Q ss_pred             cCCCChhhhccCCc
Q 040605          208 LERGSLATNLSNDA  221 (226)
Q Consensus       208 ~~~g~L~~~l~~~~  221 (226)
                      ++ ++|.+++....
T Consensus        80 ~~-~~l~~~~~~~~   92 (283)
T cd07835          80 LD-LDLKKYMDSSP   92 (283)
T ss_pred             cC-cCHHHHHhhCC
Confidence            95 79999987543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.14  E-value=8e-12  Score=94.97  Aligned_cols=87  Identities=32%  Similarity=0.486  Sum_probs=75.9

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |.....||+|+||.||++..+ .|..+|+|.+...   .   +.++...|+.+|.+...+++|+.+|.+......+||||
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~---s---DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD---T---DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc---c---hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            444456999999999999664 7999999998641   1   46899999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      ||--|+..+.++-.
T Consensus       109 YCGAGSiSDI~R~R  122 (502)
T KOG0574|consen  109 YCGAGSISDIMRAR  122 (502)
T ss_pred             hcCCCcHHHHHHHh
Confidence            99999999998744

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.13  E-value=1.6e-10  Score=94.05  Aligned_cols=86  Identities=23%  Similarity=0.380  Sum_probs=72.3

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      +++||+|.||+||-|..+ +|+.||||.+.+ .... ........+|+.+|.+++||.||.+.-.|++++..++|||-+ 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdK-lrFp-~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-  645 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDK-LRFP-TKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-  645 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeec-ccCC-CchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-
Confidence            468999999999999764 899999999975 2222 224578999999999999999999999999999999999999 


Q ss_pred             CCChhhhccC
Q 040605          210 RGSLATNLSN  219 (226)
Q Consensus       210 ~g~L~~~l~~  219 (226)
                      +||+.+.|-.
T Consensus       646 ~GDMLEMILS  655 (888)
T KOG4236|consen  646 HGDMLEMILS  655 (888)
T ss_pred             cchHHHHHHH
Confidence            4788777653

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.13  E-value=2.2e-10  Score=89.84  Aligned_cols=92  Identities=27%  Similarity=0.383  Sum_probs=74.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~  202 (226)
                      ++|...+.||+|+||.||++... ++..+++|.++.... . ......+.+|+.++.+++|||++++.+++...  ...+
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKE-K-EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccc-c-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            35667778999999999999775 688999999864211 1 11234678899999999999999999999877  8899


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +++||++ ++|.+++...
T Consensus        83 lv~e~~~-~~L~~~~~~~   99 (293)
T cd07843          83 MVMEYVE-HDLKSLMETM   99 (293)
T ss_pred             EEehhcC-cCHHHHHHhc
Confidence            9999998 5999888653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.13  E-value=2e-10  Score=90.63  Aligned_cols=91  Identities=23%  Similarity=0.426  Sum_probs=71.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||++... +|.    .+|+|.+....   .......+.+|+.+++.++|+|+++++|+|... .
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~   82 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT---GPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-T   82 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-C
Confidence            44666778999999999999653 444    47888875421   112345789999999999999999999998754 4


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.+++...
T Consensus        83 ~~~v~e~~~~g~l~~~~~~~  102 (303)
T cd05110          83 IQLVTQLMPHGCLLDYVHEH  102 (303)
T ss_pred             ceeeehhcCCCCHHHHHHhc
Confidence            67999999999999998754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.12  E-value=5e-10  Score=88.71  Aligned_cols=90  Identities=27%  Similarity=0.456  Sum_probs=71.9

Q ss_pred             ccccceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~  202 (226)
                      |...+.||+|+||.||++...   ++..+|+|.+..... ........+.+|+.++.+++|||++++++++...  ...+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKE-QYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccc-cccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            555678999999999999764   478999999875221 1112346788999999999999999999999887  7899


Q ss_pred             EEEEccCCCChhhhccC
Q 040605          203 LVYEYLERGSLATNLSN  219 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~  219 (226)
                      +||||++ ++|.+++..
T Consensus        81 lv~e~~~-~~l~~~~~~   96 (316)
T cd07842          81 LLFDYAE-HDLWQIIKF   96 (316)
T ss_pred             EEEeCCC-cCHHHHHHh
Confidence            9999998 577777653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.12  E-value=3.1e-10  Score=89.03  Aligned_cols=91  Identities=26%  Similarity=0.389  Sum_probs=72.7

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCe----
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARH----  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~----  200 (226)
                      +|...+.||+|+||.||++... ++..||+|.++.....  ......+.+|+.++..++ |+|++++++++...+.    
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE--EGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc--cCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            5777789999999999999764 7899999987642111  113467889999999995 6999999999876655    


Q ss_pred             -EEEEEEccCCCChhhhccCC
Q 040605          201 -SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 -~~lv~e~~~~g~L~~~l~~~  220 (226)
                       .+++|||++ ++|.+++...
T Consensus        80 ~~~lv~e~~~-~~l~~~~~~~   99 (295)
T cd07837          80 SLYLVFEYLD-SDLKKFMDSN   99 (295)
T ss_pred             eEEEEeeccC-cCHHHHHHHh
Confidence             899999998 5899988643

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.12  E-value=3.2e-10  Score=94.29  Aligned_cols=82  Identities=18%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|.....||+|+||.||++... .+..||||....          ..+.+|++++++++|+|||++++++...+..+++|
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~----------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~  239 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY----------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVL  239 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc----------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            5788889999999999999765 578899996421          34678999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+. |+|.+++..
T Consensus       240 e~~~-~~L~~~l~~  252 (461)
T PHA03211        240 PKYR-SDLYTYLGA  252 (461)
T ss_pred             EccC-CCHHHHHHh
Confidence            9995 899998864

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.12  E-value=2.7e-10  Score=94.53  Aligned_cols=85  Identities=21%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      ..+|...+.||+|+||.||+|.. .++..||||++...        .....+|+.+|+.++|+||+++.+++...     
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~--------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~  136 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD--------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKN  136 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC--------cchHHHHHHHHHhcCCCCCcceeeeEeecccccC
Confidence            35688889999999999999976 47889999988541        12345799999999999999999876432     


Q ss_pred             ---CeEEEEEEccCCCChhhhcc
Q 040605          199 ---RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 ---~~~~lv~e~~~~g~L~~~l~  218 (226)
                         ...++||||++ |+|.+++.
T Consensus       137 ~~~~~l~lvmE~~~-~~l~~~~~  158 (440)
T PTZ00036        137 EKNIFLNVVMEFIP-QTVHKYMK  158 (440)
T ss_pred             CCceEEEEEEecCC-ccHHHHHH
Confidence               24669999998 57877764

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.11  E-value=4.4e-10  Score=88.94  Aligned_cols=90  Identities=29%  Similarity=0.437  Sum_probs=72.7

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... ++..+++|.+... ........+.+.+|+++++.++|+|++++.+++......++|+|
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS-GKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecc-cccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            444567999999999999764 6788999998641 11222234678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+. |+|.+++..
T Consensus        96 ~~~-~~l~~~~~~  107 (308)
T cd06634          96 YCL-GSASDLLEV  107 (308)
T ss_pred             ccC-CCHHHHHHH
Confidence            997 788887753

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.11  E-value=7e-11  Score=90.52  Aligned_cols=99  Identities=20%  Similarity=0.406  Sum_probs=82.3

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEE-EcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGF  194 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~-~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~  194 (226)
                      +++|+...|++     +||+|.++.|-.+ .+.+|..+|||.+.+ ..   -+......+|++++..- .|+||++|+.+
T Consensus        74 ~F~d~YkLt~e-----~LGeGAyasVqtcv~i~t~~EYAVKiidK-q~---gHsR~RvfREVe~f~~Cqgh~nilqLief  144 (463)
T KOG0607|consen   74 KFEDMYKLTSE-----LLGEGAYASVQTCVSIQTGKEYAVKIIDK-QP---GHSRSRVFREVETFYQCQGHKNILQLIEF  144 (463)
T ss_pred             hHHHHHHhHHH-----HhcCccceeeeeeeeeccchhhhhhhhhc-CC---chHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            35666666654     6999999999988 457899999999876 22   23567899999999877 69999999999


Q ss_pred             EEeCCeEEEEEEccCCCChhhhccCCcccc
Q 040605          195 CSHARHSFLVYEYLERGSLATNLSNDAAAE  224 (226)
Q Consensus       195 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  224 (226)
                      ++++...|||+|-|.+|.|..+|+++...+
T Consensus       145 FEdd~~FYLVfEKm~GGplLshI~~~~~F~  174 (463)
T KOG0607|consen  145 FEDDTRFYLVFEKMRGGPLLSHIQKRKHFN  174 (463)
T ss_pred             hcccceEEEEEecccCchHHHHHHHhhhcc
Confidence            999999999999999999999998765443

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.11  E-value=2.4e-10  Score=87.67  Aligned_cols=90  Identities=26%  Similarity=0.416  Sum_probs=75.7

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|++|.+|++.. .++..+++|.+..... . .....++..|++++++++|+|++++.+++......++|+|
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSM-S-QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhc-c-HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            55667899999999999965 4788999999864211 1 2245678899999999999999999999998999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++++|.+++.+
T Consensus        80 ~~~~~~L~~~~~~   92 (256)
T cd08530          80 YAPFGDLSKAISK   92 (256)
T ss_pred             hcCCCCHHHHHHH
Confidence            9999999999865

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.11  E-value=5.1e-10  Score=86.19  Aligned_cols=89  Identities=24%  Similarity=0.297  Sum_probs=67.7

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHH-hcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL-TKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l-~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      +.||+|+||.||++... +|..+|+|.++.. ..........+..|..++ ...+|+|++++++++...+..++++||++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKS-DMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecch-hhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence            35899999999999764 6889999998641 111111223455555544 45589999999999999999999999999


Q ss_pred             CCChhhhccCCc
Q 040605          210 RGSLATNLSNDA  221 (226)
Q Consensus       210 ~g~L~~~l~~~~  221 (226)
                      +|+|.++++...
T Consensus        81 ~~~L~~~l~~~~   92 (260)
T cd05611          81 GGDCASLIKTLG   92 (260)
T ss_pred             CCCHHHHHHHcC
Confidence            999999987543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.11  E-value=1.8e-10  Score=89.93  Aligned_cols=89  Identities=27%  Similarity=0.431  Sum_probs=73.1

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |...+.||+|+||.||++... +|..+|+|.++....  .......+.+|+.++.+++|+|++++++++...+..++++|
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccc--cccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            555678999999999999764 789999999864211  11123567889999999999999999999999999999999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |++ ++|.++++.
T Consensus        80 ~~~-~~l~~~~~~   91 (284)
T cd07839          80 YCD-QDLKKYFDS   91 (284)
T ss_pred             cCC-CCHHHHHHh
Confidence            997 688888764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.11  E-value=5.8e-10  Score=87.02  Aligned_cols=88  Identities=22%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHH---hcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL---TKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l---~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .||+|+||.||++... ++..+|+|.+....... ......+.+|..++   ...+|+|++.+.+++...+..++||||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM-KQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcccccc-chHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            3899999999999764 68899999886421111 11223344454333   3447999999999999899999999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.++++...
T Consensus        80 ~~~~L~~~i~~~~   92 (279)
T cd05633          80 NGGDLHYHLSQHG   92 (279)
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999987543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.10  E-value=6e-10  Score=90.06  Aligned_cols=91  Identities=24%  Similarity=0.379  Sum_probs=72.2

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----  199 (226)
                      .++|...+.||+|+||.||++... +|..+|+|.+....  ........+.+|+.++..++||||+++++++...+    
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   97 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPF--QNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccc--cchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccc
Confidence            367888889999999999999654 68999999986421  11224567889999999999999999999886443    


Q ss_pred             --eEEEEEEccCCCChhhhcc
Q 040605          200 --HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 --~~~lv~e~~~~g~L~~~l~  218 (226)
                        ..++||||++ ++|.+.++
T Consensus        98 ~~~~~lv~e~~~-~~l~~~~~  117 (359)
T cd07876          98 FQDVYLVMELMD-ANLCQVIH  117 (359)
T ss_pred             cceeEEEEeCCC-cCHHHHHh
Confidence              4799999997 56766654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.09  E-value=8.3e-10  Score=86.45  Aligned_cols=90  Identities=26%  Similarity=0.487  Sum_probs=67.4

Q ss_pred             CccccceeccCCceeEEEEEc-C-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC---CCCcccceeeEEEe----
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-P-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI---RHRNIVKFYGFCSH----  197 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~~----  197 (226)
                      +|...+.||+|+||.||++.. . ++..||+|.++......  .....+.+|+.++..+   +||||++++++|..    
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC--CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            466677899999999999975 2 46789999986422111  1234566777776655   69999999999852    


Q ss_pred             -CCeEEEEEEccCCCChhhhccC
Q 040605          198 -ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       198 -~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                       ....++|+||++ |+|.+++..
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~~~  101 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYLDK  101 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHHHh
Confidence             346889999997 799998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.09  E-value=2.4e-10  Score=88.46  Aligned_cols=91  Identities=26%  Similarity=0.461  Sum_probs=73.5

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCc-ccceeeEEEeCC------
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN-IVKFYGFCSHAR------  199 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~n-lv~l~g~~~~~~------  199 (226)
                      |...+.+|+|.||+||+|.. .+|..||+|+++.....  ......-.+|+.++.+++|+| ||+|.+++.+.+      
T Consensus        13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~--EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEE--EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccc--cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            44445699999999999965 48899999999763221  112355789999999999999 999999998877      


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++|+||++ -+|.+++....
T Consensus        91 ~l~lvfe~~d-~DL~~ymd~~~  111 (323)
T KOG0594|consen   91 KLYLVFEFLD-RDLKKYMDSLP  111 (323)
T ss_pred             eEEEEEEeec-ccHHHHHHhcc
Confidence            7889999997 68999987654

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.09  E-value=3.8e-10  Score=91.20  Aligned_cols=85  Identities=18%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ...+|...+.||+|+||.||++... ++..||+|....          .....|+.++.+++|+||+++++++...+..+
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~----------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  133 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK----------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITC  133 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc----------cccHHHHHHHHhCCCCCCcChhheEEeCCeeE
Confidence            3457888899999999999999765 567899997532          12356899999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccC
Q 040605          203 LVYEYLERGSLATNLSN  219 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~  219 (226)
                      +|+||+. |+|.+++..
T Consensus       134 lv~e~~~-~~l~~~l~~  149 (357)
T PHA03209        134 MVLPHYS-SDLYTYLTK  149 (357)
T ss_pred             EEEEccC-CcHHHHHHh
Confidence            9999995 799998864

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.09  E-value=7e-10  Score=86.52  Aligned_cols=89  Identities=30%  Similarity=0.471  Sum_probs=73.4

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEEEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSFLVY  205 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~lv~  205 (226)
                      ...+.||+|++|.||++... ++..+|+|.+....  ........+.+|+.++.+++|+|++++.+++...  +..++|+
T Consensus         2 ~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           2 EKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN--EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             eeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            34567999999999999765 58899999997632  1122346788999999999999999999999887  7899999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++ ++|.+++...
T Consensus        80 e~~~-~~l~~~~~~~   93 (287)
T cd07840          80 EYMD-HDLTGLLDSP   93 (287)
T ss_pred             cccc-ccHHHHHhcc
Confidence            9998 5899888654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.08  E-value=2.9e-10  Score=88.65  Aligned_cols=89  Identities=29%  Similarity=0.483  Sum_probs=72.4

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      ...+.||+|++|.||+|... ++..+++|++......   .......+|+..+.+++ |+|++++.+++...+..++|||
T Consensus         2 ~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   78 (283)
T cd07830           2 KVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS---WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFE   78 (283)
T ss_pred             eeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc---hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEe
Confidence            44567999999999999875 5788999998642111   12334567999999998 9999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      |+ +|+|.++++...
T Consensus        79 ~~-~~~l~~~~~~~~   92 (283)
T cd07830          79 YM-EGNLYQLMKDRK   92 (283)
T ss_pred             cC-CCCHHHHHHhcc
Confidence            99 799999887543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.08  E-value=7.4e-10  Score=88.64  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCch----------hhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQI----------ADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~----------~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .+.||+|+||.||++... ++..+|+|.+.........          .....+.+|++++..++|+|++++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            457999999999999754 7899999998642111100          01125789999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..+++|||++ |+|.+++...
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~  113 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRK  113 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhc
Confidence            9999999997 7999988643

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.07  E-value=9.4e-10  Score=85.67  Aligned_cols=88  Identities=25%  Similarity=0.344  Sum_probs=69.7

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeC--CeEEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA--RHSFLV  204 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~--~~~~lv  204 (226)
                      ...+.||+|+||.||++... ++..+|+|.++......   ......+|+..+.++. |+|++++++++...  +..++|
T Consensus         2 ~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           2 KILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL---EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             ceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc---hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            34567999999999999764 78899999986522111   2234567899999885 99999999999887  889999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||++ |+|.+++...
T Consensus        79 ~e~~~-~~l~~~l~~~   93 (282)
T cd07831          79 FELMD-MNLYELIKGR   93 (282)
T ss_pred             EecCC-ccHHHHHHhc
Confidence            99997 6888888753

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.06  E-value=9.9e-10  Score=86.89  Aligned_cols=92  Identities=37%  Similarity=0.460  Sum_probs=73.2

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~  201 (226)
                      .++|...+.||+|+||.||++... +|..||+|.++......  .....+.+|+.++.+++|+|++++.+++...  +..
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD--GIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC--CCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            356888889999999999999764 68999999986422111  1234567899999999999999999998654  568


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      ++|+||++ ++|.+++..
T Consensus        84 ~lv~e~~~-~~l~~~l~~  100 (309)
T cd07845          84 FLVMEYCE-QDLASLLDN  100 (309)
T ss_pred             EEEEecCC-CCHHHHHHh
Confidence            99999997 588888764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.06  E-value=1.2e-09  Score=86.60  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=65.0

Q ss_pred             ceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEEEEEE
Q 040605          132 YCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYE  206 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~lv~e  206 (226)
                      ..||+|+||.||++...   ++..+|+|.+... .     ....+.+|+.++.+++|||++++.+++..  ....++++|
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~-~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGT-G-----ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFD   80 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCC-C-----CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEe
Confidence            57999999999999764   4578999988641 1     23468899999999999999999998854  457789999


Q ss_pred             ccCCCChhhhcc
Q 040605          207 YLERGSLATNLS  218 (226)
Q Consensus       207 ~~~~g~L~~~l~  218 (226)
                      |++ ++|.+++.
T Consensus        81 ~~~-~~l~~~~~   91 (317)
T cd07867          81 YAE-HDLWHIIK   91 (317)
T ss_pred             eeC-CcHHHHHH
Confidence            997 57888775

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.06  E-value=1e-09  Score=86.66  Aligned_cols=92  Identities=29%  Similarity=0.448  Sum_probs=72.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+.......  .....+.+|+.++++++|||+++++++|...+     
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE--GFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC--CchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            46788889999999999999764 78999999986422111  12345678999999999999999999987654     


Q ss_pred             ---eEEEEEEccCCCChhhhccCC
Q 040605          200 ---HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ---~~~lv~e~~~~g~L~~~l~~~  220 (226)
                         ..++|+||++ ++|.+++...
T Consensus        90 ~~~~~~lv~e~~~-~~l~~~l~~~  112 (310)
T cd07865          90 YKGSFYLVFEFCE-HDLAGLLSNK  112 (310)
T ss_pred             CCceEEEEEcCCC-cCHHHHHHhc
Confidence               3499999997 5888887643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.06  E-value=1.5e-09  Score=81.37  Aligned_cols=90  Identities=37%  Similarity=0.579  Sum_probs=76.3

Q ss_pred             cccceeccCCceeEEEEEcCC-CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~-g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|++|.||++...+ +..+++|........   ...+.+.+|++.+.+++|+|++++++++......++++||
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   78 (225)
T smart00221        2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEY   78 (225)
T ss_pred             ceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEec
Confidence            445679999999999998764 889999998652221   2457899999999999999999999999988999999999


Q ss_pred             cCCCChhhhccCCc
Q 040605          208 LERGSLATNLSNDA  221 (226)
Q Consensus       208 ~~~g~L~~~l~~~~  221 (226)
                      +++++|.+++....
T Consensus        79 ~~~~~L~~~~~~~~   92 (225)
T smart00221       79 CEGGDLFDYLRKKG   92 (225)
T ss_pred             cCCCCHHHHHHhcc
Confidence            99999999987643

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.05  E-value=1.3e-09  Score=86.49  Aligned_cols=81  Identities=23%  Similarity=0.347  Sum_probs=65.5

Q ss_pred             ceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEEEEEE
Q 040605          132 YCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYE  206 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~lv~e  206 (226)
                      ..||+|+||.||++...   ++..+|+|.+... .     ....+.+|+.++.+++||||+++.+++..  ....++++|
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~-~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT-G-----ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFD   80 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCC-C-----CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEe
Confidence            57999999999999754   5678999998641 1     13567899999999999999999998854  456889999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |++ ++|.+++..
T Consensus        81 ~~~-~~l~~~~~~   92 (317)
T cd07868          81 YAE-HDLWHIIKF   92 (317)
T ss_pred             ccC-CCHHHHHHh
Confidence            997 588888753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.05  E-value=1.4e-09  Score=87.34  Aligned_cols=92  Identities=20%  Similarity=0.338  Sum_probs=73.3

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----  199 (226)
                      .++|...+.||+|+||.||++.. .++..||||++....  ........+.+|+.++.+++|+||+++.+++...+    
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence            46688888999999999999964 478999999985421  11223457889999999999999999999886543    


Q ss_pred             --eEEEEEEccCCCChhhhccC
Q 040605          200 --HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 --~~~lv~e~~~~g~L~~~l~~  219 (226)
                        ..++|+||+ +++|.+++..
T Consensus        92 ~~~~~lv~e~~-~~~l~~~~~~  112 (343)
T cd07880          92 FHDFYLVMPFM-GTDLGKLMKH  112 (343)
T ss_pred             cceEEEEEecC-CCCHHHHHhc
Confidence              358999999 6799888764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=3e-10  Score=88.07  Aligned_cols=93  Identities=28%  Similarity=0.430  Sum_probs=75.1

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-----CCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-----ARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-----~~~  200 (226)
                      .|...+.||+|.+|.|+++.. .+|..||||++...-  ......+.-.+|+.+++.++|+||+.+......     -+.
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F--~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPF--ENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhh--hchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence            344456799999999999965 488999999997421  222356788999999999999999999998865     357


Q ss_pred             EEEEEEccCCCChhhhccCCcc
Q 040605          201 SFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      .|+|+|+|+ -||++.|+..+.
T Consensus       101 vYiV~elMe-tDL~~iik~~~~  121 (359)
T KOG0660|consen  101 VYLVFELME-TDLHQIIKSQQD  121 (359)
T ss_pred             eEEehhHHh-hHHHHHHHcCcc
Confidence            899999996 799999987653

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.04  E-value=4.7e-10  Score=86.40  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC-CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP-GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~-~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |...+.||+|+||.||++... .+...++|.++.... .........+..|+.++.+++|||++++.+++...+..++++
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            555678999999999999654 344556665543111 111123456778999999999999999999999888999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++++|.++++.
T Consensus        82 e~~~~~~l~~~~~~   95 (260)
T cd08222          82 EYCEGRDLDCKLEE   95 (260)
T ss_pred             EeCCCCCHHHHHHH
Confidence            99999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.04  E-value=1.5e-09  Score=87.99  Aligned_cols=91  Identities=20%  Similarity=0.347  Sum_probs=72.1

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      .++|...+.||+|+||.||++... .+..+|||++.....  .......+.+|+.++..++|+||+++++++...     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~  100 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  100 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCcccc--CchhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence            367888889999999999999654 688999999865221  122356788999999999999999999987543     


Q ss_pred             -CeEEEEEEccCCCChhhhcc
Q 040605          199 -RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~  218 (226)
                       ...++||||++ ++|.+++.
T Consensus       101 ~~~~~lv~e~~~-~~l~~~~~  120 (364)
T cd07875         101 FQDVYIVMELMD-ANLCQVIQ  120 (364)
T ss_pred             cCeEEEEEeCCC-CCHHHHHH
Confidence             35799999997 57777664

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.03  E-value=1.7e-09  Score=84.27  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHH---HHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEI---EALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~---~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      +||+|+||.||++... ++..||+|.+..... ........+..|.   ..++...|+|++++.+++...+..++|+||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-KMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecccc-ccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            3799999999999654 688999999865211 1111122344443   3445568999999999999999999999999


Q ss_pred             CCCChhhhccCC
Q 040605          209 ERGSLATNLSND  220 (226)
Q Consensus       209 ~~g~L~~~l~~~  220 (226)
                      ++|+|.+++...
T Consensus        80 ~g~~L~~~l~~~   91 (278)
T cd05606          80 NGGDLHYHLSQH   91 (278)
T ss_pred             CCCcHHHHHHhc
Confidence            999999988654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.02  E-value=1.1e-09  Score=87.80  Aligned_cols=92  Identities=27%  Similarity=0.455  Sum_probs=73.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC--CeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~--~~~  201 (226)
                      ++|...+.||+|+||.||+|... ++..+|+|++.....  .......+.+|+.++.++ +|+||+++++++...  ...
T Consensus         7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~--~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFR--NATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccC--cchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            45677778999999999999765 688999999854111  112345678899999999 999999999998653  368


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++|+||++ ++|.++++..
T Consensus        85 ~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN  102 (337)
T ss_pred             EEEecccc-cCHHHHHhcC
Confidence            99999997 6999988653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.02  E-value=2.1e-09  Score=86.47  Aligned_cols=100  Identities=23%  Similarity=0.349  Sum_probs=78.1

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFC  195 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~  195 (226)
                      ...++...+++|...+.||+|+||.||++.. .++..||+|++....  ......+.+.+|+.++.+++|+||+++.+++
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcc--hhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            3456667778899999999999999999965 578999999986421  1122346788999999999999999999988


Q ss_pred             EeC------CeEEEEEEccCCCChhhhccC
Q 040605          196 SHA------RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       196 ~~~------~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ...      ...+++++++ +++|.+++..
T Consensus        86 ~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~  114 (345)
T cd07877          86 TPARSLEEFNDVYLVTHLM-GADLNNIVKC  114 (345)
T ss_pred             eecccccccccEEEEehhc-ccCHHHHHhc
Confidence            543      3467888876 6899887764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.02  E-value=1.2e-09  Score=86.48  Aligned_cols=85  Identities=20%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      .+|.|+++.+|++.. ++..+|+|++....  ......+.+..|+..++.++|+||+++++++...+..+++|||+++|+
T Consensus         9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~--~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDS--CSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hhcCCceEEEEEecC-CCCEEEEEEEeccc--cchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            345566666666655 78999999986521  122245789999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.++++..
T Consensus        86 l~~~l~~~   93 (314)
T cd08216          86 CEDLLKTH   93 (314)
T ss_pred             HHHHHHHh
Confidence            99998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.02  E-value=8.6e-10  Score=88.28  Aligned_cols=93  Identities=24%  Similarity=0.339  Sum_probs=74.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~  200 (226)
                      .+|...+.||+|+||.||++... +|..+|+|++......  ....+.+.+|+.++..++|+||+++.+++..    ...
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   82 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV--PTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKD   82 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc--ccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCce
Confidence            56777889999999999999754 7899999998652211  1234678889999999999999999988753    346


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++|+||+. |+|.++++...
T Consensus        83 ~~lv~e~~~-~~l~~~~~~~~  102 (334)
T cd07855          83 VYVVMDLME-SDLHHIIHSDQ  102 (334)
T ss_pred             EEEEEehhh-hhHHHHhccCC
Confidence            899999996 79999987543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.02  E-value=1.4e-09  Score=87.74  Aligned_cols=91  Identities=21%  Similarity=0.359  Sum_probs=71.9

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      .++|...+.||+|+||.||++... .+..+|+|++.....  .......+.+|+.++..++|+||+++++++...     
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc--ChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            467888889999999999999654 688999999865221  222456788999999999999999999988543     


Q ss_pred             -CeEEEEEEccCCCChhhhcc
Q 040605          199 -RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~  218 (226)
                       ...+++|||++ ++|.+++.
T Consensus        94 ~~~~~lv~e~~~-~~l~~~~~  113 (355)
T cd07874          94 FQDVYLVMELMD-ANLCQVIQ  113 (355)
T ss_pred             cceeEEEhhhhc-ccHHHHHh
Confidence             35799999997 56777654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.02  E-value=1.3e-09  Score=87.63  Aligned_cols=93  Identities=20%  Similarity=0.343  Sum_probs=72.7

Q ss_pred             HhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC----
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA----  198 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~----  198 (226)
                      ..++|...+.||+|+||.||++.. .++..||||.+....  ......+.+.+|+.++..++|+||+++++++...    
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPF--QSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchh--hhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            346678888999999999999965 478899999986421  1112346688999999999999999999887532    


Q ss_pred             --CeEEEEEEccCCCChhhhccC
Q 040605          199 --RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 --~~~~lv~e~~~~g~L~~~l~~  219 (226)
                        ...++++|++ +++|.+++..
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~  112 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKC  112 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhc
Confidence              3568999988 6899888764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.02  E-value=1.5e-09  Score=86.98  Aligned_cols=92  Identities=24%  Similarity=0.346  Sum_probs=73.2

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      .++|...+.||+|+||.||++.. .+|..||+|.+....   .......+..|+.++.+++|+|++++++++...     
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE---HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence            35688888999999999999965 478999999986411   112346788999999999999999999987543     


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++++||++ ++|.++++..
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~~~  101 (336)
T cd07849          81 NDVYIVQELME-TDLYKLIKTQ  101 (336)
T ss_pred             ceEEEEehhcc-cCHHHHHhcC
Confidence            35799999997 5888877643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.00  E-value=1.5e-09  Score=87.08  Aligned_cols=93  Identities=24%  Similarity=0.381  Sum_probs=73.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      +.|...+.||+|+||+||++.. .++..||||.+.....  .......+.+|+.++..++|+|++++.+++...     .
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFD--NRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEeccccc--ccchhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence            4577788999999999999965 4789999999864211  112345678899999999999999999988643     3


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++++||+. ++|.+++....
T Consensus        83 ~~~lv~e~~~-~~L~~~~~~~~  103 (337)
T cd07858          83 DVYIVYELMD-TDLHQIIRSSQ  103 (337)
T ss_pred             cEEEEEeCCC-CCHHHHHhcCC
Confidence            5799999997 78998886543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.00  E-value=1.1e-09  Score=93.55  Aligned_cols=98  Identities=28%  Similarity=0.431  Sum_probs=79.3

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGF  194 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~  194 (226)
                      .++.+..+++-|....++|.|.+|.||+++- ++|+.+|+|.+....+     ...+...|.+++... .|||++.++|+
T Consensus        10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-----~deEiE~eynil~~~~~hpnv~~fyg~   84 (953)
T KOG0587|consen   10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-----EEEEIELEYNMLKKYSHHPNVATFYGA   84 (953)
T ss_pred             chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-----ccHHHHHHHHHHHhccCCCCcceEEEE
Confidence            3445555667788888999999999999954 5889999999876222     236778888888887 79999999999


Q ss_pred             EEe-----CCeEEEEEEccCCCChhhhccC
Q 040605          195 CSH-----ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       195 ~~~-----~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +..     ++++|+|||||.+|+..|++.+
T Consensus        85 ~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn  114 (953)
T KOG0587|consen   85 FIKKDPGNGDQLWLVMEFCGGGSVTDLVKN  114 (953)
T ss_pred             EEEecCCCCCeEEEEeeccCCccHHHHHhh
Confidence            854     5789999999999999998875

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.00  E-value=3.7e-10  Score=94.77  Aligned_cols=84  Identities=26%  Similarity=0.398  Sum_probs=72.3

Q ss_pred             eeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      +||+|.+|+||-|+.. +-..+|||.+...    +....+....|+.+.++++|.|||+.+|.|...+..-|.||-.|+|
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpek----dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEK----DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccc----cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCC
Confidence            7999999999999764 4457899998652    2224577889999999999999999999999999999999999999


Q ss_pred             ChhhhccCC
Q 040605          212 SLATNLSND  220 (226)
Q Consensus       212 ~L~~~l~~~  220 (226)
                      +|.+.|+..
T Consensus       658 SLSsLLrsk  666 (1226)
T KOG4279|consen  658 SLSSLLRSK  666 (1226)
T ss_pred             cHHHHHHhc
Confidence            999999853

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.00  E-value=1e-11  Score=91.81  Aligned_cols=89  Identities=21%  Similarity=0.346  Sum_probs=72.6

Q ss_pred             CccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +|+.-.+||+|.|..||++. .++|+..|+|.+...  .......++..+|+++.+.++|||||+|..-..+....+||+
T Consensus        12 ~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~--k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   12 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTK--KLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             hhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhh--hhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            34555679999999999984 458888888877531  111225688999999999999999999999999999999999


Q ss_pred             EccCCCChhhhc
Q 040605          206 EYLERGSLATNL  217 (226)
Q Consensus       206 e~~~~g~L~~~l  217 (226)
                      |+|.+|+|..=|
T Consensus        90 e~m~G~dl~~eI  101 (355)
T KOG0033|consen   90 DLVTGGELFEDI  101 (355)
T ss_pred             ecccchHHHHHH
Confidence            999999997643

>PRK10345 hypothetical protein; Provisional

Probab=99.00  E-value=2.8e-09  Score=79.36  Aligned_cols=87  Identities=15%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-----CCCcccceeeEEEeCC---
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-----RHRNIVKFYGFCSHAR---  199 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-----~h~nlv~l~g~~~~~~---  199 (226)
                      ++....||+|+||.||.  .+.....+||++.... .   ...+.+.+|+..+..+     .||||++++|++.++.   
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~-~---~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g   77 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRG-D---GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG   77 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCeEEEEEeccc-c---chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe
Confidence            34556899999999996  4333334799886421 1   1346799999999999     5799999999998863   


Q ss_pred             eEE-EEEEc--cCCCChhhhccCC
Q 040605          200 HSF-LVYEY--LERGSLATNLSND  220 (226)
Q Consensus       200 ~~~-lv~e~--~~~g~L~~~l~~~  220 (226)
                      ..+ +|+||  ++.|+|.+++.+.
T Consensus        78 ~v~~~I~e~~G~~~~tL~~~l~~~  101 (210)
T PRK10345         78 YVYDVIADFDGKPSITLTEFAEQC  101 (210)
T ss_pred             EEEEEEecCCCCcchhHHHHHHcc
Confidence            434 78999  6689999999753

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.99  E-value=7e-10  Score=87.29  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=77.4

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceee
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG  193 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g  193 (226)
                      ++......+....++.+|.||.||+|.+.      +.+.|-||.+++..+.   -....++.|.-.+..+.|||+.++.+
T Consensus       278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~---iQv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQ---IQVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccH---HHHHHHHHHHHHHhcCcCCCccceeE
Confidence            44444556777778999999999999654      3456788888653222   24567999999999999999999999


Q ss_pred             EEEeC-CeEEEEEEccCCCChhhhccCC
Q 040605          194 FCSHA-RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       194 ~~~~~-~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+.+. ..+++.|.++.-|+|..+|+-.
T Consensus       355 V~ie~~~~P~V~y~~~~~gNLK~FL~~C  382 (563)
T KOG1024|consen  355 VSIEDYATPFVLYPATGVGNLKSFLQIC  382 (563)
T ss_pred             EEeeccCcceEEEeccCcchHHHHHHHh
Confidence            99764 5789999999999999999843

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.98  E-value=1.9e-09  Score=88.19  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             cCccccceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      .+|.....||+|+||.||++...   .+..|++|.+..         ...+.+|++++.+++|+||+++++++...+..+
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~---------~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~  162 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG---------GKTPGREIDILKTISHRAIINLIHAYRWKSTVC  162 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc---------cccHHHHHHHHHhcCCCCccceeeeEeeCCEEE
Confidence            46888889999999999998643   456899998754         123568999999999999999999999899999


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      ++|||+. ++|.+++...
T Consensus       163 lv~e~~~-~~l~~~l~~~  179 (392)
T PHA03207        163 MVMPKYK-CDLFTYVDRS  179 (392)
T ss_pred             EEehhcC-CCHHHHHHhc
Confidence            9999996 7899988543

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.98  E-value=1e-09  Score=85.39  Aligned_cols=89  Identities=31%  Similarity=0.458  Sum_probs=74.0

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      .....||+|.+|.||++... ++..+++|.+....  .+....+.+..|+.++++++|+|++++.+++...+..++|+||
T Consensus         2 ~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           2 EKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN--EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             eeehcccccCcceEEEeeecCCCcEEEEEEecccc--ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            34467999999999999775 58999999987522  1112346788999999999999999999999999999999999


Q ss_pred             cCCCChhhhccCC
Q 040605          208 LERGSLATNLSND  220 (226)
Q Consensus       208 ~~~g~L~~~l~~~  220 (226)
                      ++ ++|.+++...
T Consensus        80 ~~-~~l~~~i~~~   91 (282)
T cd07829          80 CD-MDLKKYLDKR   91 (282)
T ss_pred             cC-cCHHHHHHhh
Confidence            98 6999999764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.97  E-value=4.7e-09  Score=84.69  Aligned_cols=92  Identities=22%  Similarity=0.397  Sum_probs=73.0

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      ...|...+.||+|+||.||++.. .++..+|+|.+.....  +......+.+|+.++.+++|+|++++++++...     
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   92 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQ--NVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE   92 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCcccc--ChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence            46688888999999999999965 4789999999864211  122346788999999999999999999988543     


Q ss_pred             -CeEEEEEEccCCCChhhhccC
Q 040605          199 -RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~~  219 (226)
                       ...++|+||++ ++|.+++..
T Consensus        93 ~~~~~lv~e~~~-~~l~~~~~~  113 (353)
T cd07850          93 FQDVYLVMELMD-ANLCQVIQM  113 (353)
T ss_pred             cCcEEEEEeccC-CCHHHHHhh
Confidence             35799999996 688887753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.97  E-value=3.3e-09  Score=82.97  Aligned_cols=90  Identities=31%  Similarity=0.496  Sum_probs=66.9

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC---CCCcccceeeEEEe-----C
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI---RHRNIVKFYGFCSH-----A  198 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~~-----~  198 (226)
                      |...+.||+|+||.||++... ++..+|+|.++......  .....+.+|+.++..+   +||||+++++++..     .
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED--GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC--CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            556678999999999999664 78899999986421111  1224556677766654   79999999998854     2


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++++||++ ++|.++++..
T Consensus        80 ~~~~lv~e~~~-~~l~~~~~~~  100 (288)
T cd07863          80 TKVTLVFEHVD-QDLRTYLDKV  100 (288)
T ss_pred             ceEEEEEcccc-cCHHHHHHhc
Confidence            45789999998 5899888653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.97  E-value=2.3e-09  Score=83.85  Aligned_cols=86  Identities=29%  Similarity=0.432  Sum_probs=68.6

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|.....||+|+||.||++... ++..+|+|.+......   .....+.+|+.++.++. |+||+++++++..++..+++
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE---KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh---HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            3445567999999999999664 6899999998642211   24567899999999996 99999999999988899999


Q ss_pred             EEccCCCChhhh
Q 040605          205 YEYLERGSLATN  216 (226)
Q Consensus       205 ~e~~~~g~L~~~  216 (226)
                      +||++ ++|.++
T Consensus        82 ~e~~~-~~l~~l   92 (288)
T cd06616          82 MELMD-ISLDKF   92 (288)
T ss_pred             Eeccc-CCHHHH
Confidence            99987 455443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.96  E-value=2.9e-10  Score=93.84  Aligned_cols=92  Identities=20%  Similarity=0.294  Sum_probs=73.1

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe--EEEEEEc
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH--SFLVYEY  207 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~--~~lv~e~  207 (226)
                      ..+||+|.|-+||||... +|..||.-.++...-.......+.|..|+.+|+.|+|+||++++.++.+...  .-+|+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            457999999999999664 6777776555432222333456899999999999999999999999977654  7799999


Q ss_pred             cCCCChhhhccCCcc
Q 040605          208 LERGSLATNLSNDAA  222 (226)
Q Consensus       208 ~~~g~L~~~l~~~~~  222 (226)
                      |..|+|..|+.+++.
T Consensus       125 ~TSGtLr~Y~kk~~~  139 (632)
T KOG0584|consen  125 FTSGTLREYRKKHRR  139 (632)
T ss_pred             ccCCcHHHHHHHhcc
Confidence            999999999987653

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.96  E-value=2.3e-10  Score=87.41  Aligned_cols=94  Identities=24%  Similarity=0.363  Sum_probs=74.4

Q ss_pred             cCccccceeccCCceeEEEEEcC---C--CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP---S--GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-AR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~---~--g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~  199 (226)
                      ..|.....||+|.+|.||++.-.   +  ...+|+|+++...+..  ....+..+|+.+++.++|+|+++|..++.+ +.
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t--GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT--GISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC--CcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            44666678999999999999543   2  2268999997632221  234678899999999999999999999987 77


Q ss_pred             eEEEEEEccCCCChhhhccCCcc
Q 040605          200 HSFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      ..++++||.++ ||...|+-++.
T Consensus       102 ~v~l~fdYAEh-DL~~II~fHr~  123 (438)
T KOG0666|consen  102 KVWLLFDYAEH-DLWHIIKFHRA  123 (438)
T ss_pred             eEEEEehhhhh-hHHHHHHHhcc
Confidence            89999999995 89999986653

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.96  E-value=4.7e-09  Score=84.31  Aligned_cols=90  Identities=24%  Similarity=0.393  Sum_probs=71.0

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      .+|...+.||+|+||.||+|.. .+|..+|+|++......  ......+.+|+.++..++|+||+++.+++....     
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS--EIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc--ccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            6788888999999999999975 47899999998642111  113456889999999999999999999986542     


Q ss_pred             -eEEEEEEccCCCChhhhcc
Q 040605          200 -HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~  218 (226)
                       ..++|+||+. .+|.+++.
T Consensus        93 ~~~~lv~e~~~-~~l~~~~~  111 (342)
T cd07879          93 QDFYLVMPYMQ-TDLQKIMG  111 (342)
T ss_pred             ceEEEEecccc-cCHHHHHc
Confidence             4689999997 47776653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.95  E-value=2.8e-09  Score=85.67  Aligned_cols=89  Identities=30%  Similarity=0.428  Sum_probs=71.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      .+|...+.||+|+||.||++.. .+|..||+|.+.....    ...+.+.+|++++.+++|+||+++++++...      
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC----chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence            4577788999999999999966 4788999999865211    2457788999999999999999998776543      


Q ss_pred             --------CeEEEEEEccCCCChhhhccC
Q 040605          199 --------RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 --------~~~~lv~e~~~~g~L~~~l~~  219 (226)
                              ...++++||++ ++|.+++..
T Consensus        81 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~  108 (342)
T cd07854          81 DVGSLTELNSVYIVQEYME-TDLANVLEQ  108 (342)
T ss_pred             ccccccccceEEEEeeccc-ccHHHHHHc
Confidence                    35789999997 689888754

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.95  E-value=5.4e-09  Score=81.02  Aligned_cols=89  Identities=15%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             HhcCcccccee--ccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCC
Q 040605          124 AKNDFDAKYCI--GNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHAR  199 (226)
Q Consensus       124 ~~~~~~~~~~l--g~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~  199 (226)
                      -.++|...+.+  |+|+||.||++... ++..+|+|..... ...      ..  |......+ +|+|++++++++...+
T Consensus        12 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~-~~~------~~--e~~~~~~~~~h~~iv~~~~~~~~~~   82 (267)
T PHA03390         12 FLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAK-NFN------AI--EPMVHQLMKDNPNFIKLYYSVTTLK   82 (267)
T ss_pred             HHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehh-hcc------hh--hHHHHHHhhcCCCEEEEEEEEecCC
Confidence            33455554444  99999999999764 6788999987541 111      11  22222212 6999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++||||+++|+|.++++...
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~  104 (267)
T PHA03390         83 GHVLIMDYIKDGDLFDLLKKEG  104 (267)
T ss_pred             eeEEEEEcCCCCcHHHHHHhcC
Confidence            9999999999999999997653

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.95  E-value=2.2e-09  Score=85.74  Aligned_cols=91  Identities=26%  Similarity=0.419  Sum_probs=74.3

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----eE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----HS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----~~  201 (226)
                      |...+.||+|++|.||++... ++..+|+|++.....  +....+.+.+|+.++..++|+||+++.+++...+     ..
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD--DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccc--cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            556678999999999999765 589999999865221  1224578999999999999999999999987765     78


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++++||++ ++|.++++...
T Consensus        80 ~lv~e~~~-~~l~~~l~~~~   98 (330)
T cd07834          80 YIVTELME-TDLHKVIKSPQ   98 (330)
T ss_pred             EEEecchh-hhHHHHHhCCC
Confidence            99999998 58999887643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.94  E-value=5.1e-09  Score=81.68  Aligned_cols=90  Identities=37%  Similarity=0.533  Sum_probs=69.4

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC---CCCcccceeeEEEeCCe---
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI---RHRNIVKFYGFCSHARH---  200 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~~~~~---  200 (226)
                      |...+.||+|+||.||++... ++..+|+|++......  ......+.+|+.++.++   +|+|++++.+++...+.   
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSE--EGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEecccccc--chhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence            345578999999999999876 5899999999742221  11235566787776555   69999999999987766   


Q ss_pred             --EEEEEEccCCCChhhhccCC
Q 040605          201 --SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 --~~lv~e~~~~g~L~~~l~~~  220 (226)
                        .+++|||++ ++|.+++...
T Consensus        79 ~~~~l~~e~~~-~~l~~~l~~~   99 (287)
T cd07838          79 LKLTLVFEHVD-QDLATYLSKC   99 (287)
T ss_pred             ceeEEEehhcc-cCHHHHHHHc
Confidence              899999997 5899888653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.92  E-value=2.6e-09  Score=88.61  Aligned_cols=89  Identities=27%  Similarity=0.396  Sum_probs=74.7

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-C-----CcccceeeEEEeCC
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-H-----RNIVKFYGFCSHAR  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h-----~nlv~l~g~~~~~~  199 (226)
                      .|...++||+|.||+|.+|.. .+++.||||.++..     ......-..|+.+|..++ |     -|+|++++++.-.+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-----k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~  261 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-----KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN  261 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-----hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence            567788999999999999955 57999999999762     113466778899998886 4     38999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +.+||+|.++ -+|.++|+.++
T Consensus       262 HlciVfELL~-~NLYellK~n~  282 (586)
T KOG0667|consen  262 HLCIVFELLS-TNLYELLKNNK  282 (586)
T ss_pred             ceeeeehhhh-hhHHHHHHhcC
Confidence            9999999997 69999998764

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.91  E-value=6.7e-09  Score=81.66  Aligned_cols=89  Identities=28%  Similarity=0.464  Sum_probs=70.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... ++..+|||.++... .  ......+..|+..+.+.. |+|++++++++......++
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~-~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~   91 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTG-N--KEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFI   91 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccC-C--hHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEE
Confidence            45667788999999999999876 48999999986521 1  123456777887777764 9999999999999999999


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      +|||++ ++|.+++.
T Consensus        92 v~e~~~-~~l~~l~~  105 (296)
T cd06618          92 CMELMS-TCLDKLLK  105 (296)
T ss_pred             EeeccC-cCHHHHHH
Confidence            999986 56766554

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=2.3e-10  Score=100.08  Aligned_cols=102  Identities=24%  Similarity=0.237  Sum_probs=83.3

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      .++....++|...++||+|+||.|...+++ .+..+|+|++.+ -..-......-|..|-.+|..-..+-|+.+.-.+.+
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK-~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK-WEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH-HHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            455566688999999999999999999775 688999999864 111111134568889999998889999999988999


Q ss_pred             CCeEEEEEEccCCCChhhhccCCc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+.|+|||||+||||..+|.+..
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~  170 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFD  170 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcC
Confidence            999999999999999999987654

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.89  E-value=4.3e-09  Score=84.62  Aligned_cols=92  Identities=21%  Similarity=0.350  Sum_probs=73.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe---
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH---  200 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~---  200 (226)
                      .++|.....||+|++|.||++... ++..+|+|++....  ......+.+.+|+.+++.++|+|++++.+++...+.   
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF--QSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc--chhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            456788889999999999999775 67899999986421  112234667889999999999999999988766554   


Q ss_pred             ---EEEEEEccCCCChhhhccC
Q 040605          201 ---SFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 ---~~lv~e~~~~g~L~~~l~~  219 (226)
                         .++|+||+ +++|.+++..
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~~  112 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVKC  112 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHhc
Confidence               89999999 5799998865

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.89  E-value=8.2e-10  Score=81.83  Aligned_cols=91  Identities=24%  Similarity=0.402  Sum_probs=76.7

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      +.|.....+|+|+|..||.++ +.++..+|+|++....    .++.+..++|++..++++|||++++++++..+     .
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~----~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~   96 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS----QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKH   96 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccc----hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCce
Confidence            457778899999999999985 5688999999997521    23568899999999999999999999888443     4


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..||++.|...|+|.+.+...
T Consensus        97 ~~yll~Pyy~~Gsl~d~i~~~  117 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEIERL  117 (302)
T ss_pred             eEEEEeehhccccHHHHHHHH
Confidence            589999999999999998753

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.89  E-value=5.9e-09  Score=81.18  Aligned_cols=88  Identities=31%  Similarity=0.466  Sum_probs=72.7

Q ss_pred             ccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          130 AKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      ..+.||+|++|.||++... ++..+++|.+......  ......+.+|+.++++++|+|++++.+++...+..++++||+
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           3 KLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES--EGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             cceeeecCCCceEEEEEcCCCCcEEEEEEecccccc--chhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            4467999999999999765 7889999998652211  123567889999999999999999999999999999999999


Q ss_pred             CCCChhhhccCC
Q 040605          209 ERGSLATNLSND  220 (226)
Q Consensus       209 ~~g~L~~~l~~~  220 (226)
                      + ++|.+++...
T Consensus        81 ~-~~l~~~l~~~   91 (283)
T cd05118          81 D-TDLYKLIKDR   91 (283)
T ss_pred             C-CCHHHHHHhh
Confidence            8 5898888753

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.89  E-value=7e-09  Score=81.91  Aligned_cols=92  Identities=28%  Similarity=0.418  Sum_probs=71.4

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----  199 (226)
                      .++|...+.||+|+||.||++... ++..+|+|.+.......  .....+.+|++++..++|+||+++++++....    
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   84 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD--GFPITALREIKILKKLKHPNVVPLIDMAVERPDKSK   84 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC--CcchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence            367888889999999999999764 78899999986422111  12346788999999999999999998875433    


Q ss_pred             ----eEEEEEEccCCCChhhhccC
Q 040605          200 ----HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ----~~~lv~e~~~~g~L~~~l~~  219 (226)
                          ..++++||++ ++|.+.+..
T Consensus        85 ~~~~~~~lv~~~~~-~~l~~~~~~  107 (311)
T cd07866          85 RKRGSVYMVTPYMD-HDLSGLLEN  107 (311)
T ss_pred             ccCceEEEEEecCC-cCHHHHHhc
Confidence                4699999997 577777764

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.88  E-value=1.1e-09  Score=84.31  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...++||+|.||.|..++-+ .|..+|+|.+++..-.. ......-+.|-++|..-+||.+..|.-.+.+.+..+.|
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviia-kdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIA-KDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheee-hHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            56778889999999999998654 78999999997632111 12344567899999999999999998788888999999


Q ss_pred             EEccCCCChhhhccCCccc
Q 040605          205 YEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~~  223 (226)
                      |||..+|.|.-+|...+..
T Consensus       247 MeyanGGeLf~HLsrer~F  265 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRERVF  265 (516)
T ss_pred             EEEccCceEeeehhhhhcc
Confidence            9999999999999876544

>PTZ00284 protein kinase; Provisional

Probab=98.87  E-value=6.3e-09  Score=87.10  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC------Cccccee
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH------RNIVKFY  192 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h------~nlv~l~  192 (226)
                      ++...+.+|...+.||+|+||+||++... .+..||||+++. ..    ...+.+..|+.++..++|      .+++.+.
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~-~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~  197 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN-VP----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQ  197 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec-ch----hhHHHHHHHHHHHHHHhhcCcccCcceeeeE
Confidence            33445677888999999999999999764 678999999864 11    123455667777666654      4588888


Q ss_pred             eEEEeC-CeEEEEEEccCCCChhhhccCCc
Q 040605          193 GFCSHA-RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       193 g~~~~~-~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++... ...++|+|++ +++|.+++...+
T Consensus       198 ~~~~~~~~~~~iv~~~~-g~~l~~~l~~~~  226 (467)
T PTZ00284        198 RYFQNETGHMCIVMPKY-GPCLLDWIMKHG  226 (467)
T ss_pred             EEEEcCCceEEEEEecc-CCCHHHHHHHcC
Confidence            888654 5788999988 678999887543

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.85  E-value=2.7e-08  Score=73.39  Aligned_cols=84  Identities=40%  Similarity=0.629  Sum_probs=71.8

Q ss_pred             eccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       134 lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      ||+|.+|.||++... ++..+++|.........   ....+.+|+..+..++|++++++++++......++++||+++++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~   77 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS---LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGS   77 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh---HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCc
Confidence            589999999999875 48999999986521111   24679999999999999999999999999899999999999999


Q ss_pred             hhhhccCC
Q 040605          213 LATNLSND  220 (226)
Q Consensus       213 L~~~l~~~  220 (226)
                      |.+++...
T Consensus        78 l~~~~~~~   85 (215)
T cd00180          78 LKDLLKEN   85 (215)
T ss_pred             HHHHHHhc
Confidence            99998754

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.85  E-value=6.4e-09  Score=76.46  Aligned_cols=83  Identities=20%  Similarity=0.225  Sum_probs=56.6

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchh----------------------hHHHHHHHHHHHhcCCCCccc
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIA----------------------DQKEFLAEIEALTKIRHRNIV  189 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~----------------------~~~~~~~e~~~l~~l~h~nlv  189 (226)
                      ..||+|+||.||+|..++|..||||.++.........                      .......|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            4699999999999988889999999997522110000                      011223588999999887764


Q ss_pred             ceeeEEEeCCeEEEEEEccCCCChhhh
Q 040605          190 KFYGFCSHARHSFLVYEYLERGSLATN  216 (226)
Q Consensus       190 ~l~g~~~~~~~~~lv~e~~~~g~L~~~  216 (226)
                      ....+.  ....+|||||++++++...
T Consensus        83 ~p~~~~--~~~~~iVmE~i~g~~l~~~  107 (190)
T cd05147          83 CPEPIL--LKSHVLVMEFIGDDGWAAP  107 (190)
T ss_pred             CCcEEE--ecCCEEEEEEeCCCCCcch
Confidence            433322  2234899999998877654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.82  E-value=4.5e-10  Score=99.57  Aligned_cols=95  Identities=34%  Similarity=0.535  Sum_probs=78.6

Q ss_pred             CccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++...+.||.|.||.||.+. ..+|...|||.+..... . .........|+.++..++|||+|+.+|+-...+..+|-|
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~-~-~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDS-D-HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCcc-c-cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            44556789999999999984 56899999999864211 1 234567889999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCccc
Q 040605          206 EYLERGSLATNLSNDAAA  223 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~~~  223 (226)
                      |||++|+|.+.+...+..
T Consensus      1314 EyC~~GsLa~ll~~gri~ 1331 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGRIE 1331 (1509)
T ss_pred             HHhccCcHHHHHHhcchh
Confidence            999999999998765543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.81  E-value=2.4e-08  Score=74.58  Aligned_cols=87  Identities=14%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCc----hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQ----IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~----~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ..||+|++|.||+|.. +|..+++|..........    ......+.+|+..+..++|+++.....++...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            4689999999999987 778899998653111111    01224688999999999999998888888777888999999


Q ss_pred             cCCCChhhhccC
Q 040605          208 LERGSLATNLSN  219 (226)
Q Consensus       208 ~~~g~L~~~l~~  219 (226)
                      +++++|.+++..
T Consensus        81 ~~G~~L~~~~~~   92 (211)
T PRK14879         81 IEGEPLKDLINS   92 (211)
T ss_pred             eCCcCHHHHHHh
Confidence            999999998764

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.81  E-value=3.3e-08  Score=79.09  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=69.6

Q ss_pred             ccccceeccCCceeEEEEEcC-C--CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC----C
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-S--GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA----R  199 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~--g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~----~  199 (226)
                      |...+.||+|+||.||++... .  +..+|+|.+......  ....+.+.+|+.++.++ .|+||+++++.+...    .
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK--KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc--chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            556678999999999999764 4  779999998642111  12346788999999999 599999999876433    4


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++++||++ ++|.+++....
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~~~  100 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRSGQ  100 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhcCC
Confidence            5788999986 78999886543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.8e-09  Score=95.35  Aligned_cols=77  Identities=29%  Similarity=0.439  Sum_probs=62.2

Q ss_pred             HHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      +-.++|.+..+||+|+||.||+++-+ ||..+|||++....   +........+|+..+++++|||+|+.+..+.+....
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~---s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~  552 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA---SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAE  552 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch---HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCc
Confidence            45577888899999999999999665 99999999997622   222456788999999999999999999888664433


Q ss_pred             E
Q 040605          202 F  202 (226)
Q Consensus       202 ~  202 (226)
                      .
T Consensus       553 ~  553 (1351)
T KOG1035|consen  553 L  553 (1351)
T ss_pred             c
Confidence            3

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.80  E-value=9.3e-09  Score=86.77  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             hcCccccceeccCCceeEEEEEcC--CCCeEEEEE--------------ecCCCCCCchhhHHHHHHHHHHHhcCCCCcc
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP--SGEFLAVKK--------------FHSPLPGDQIADQKEFLAEIEALTKIRHRNI  188 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~--~g~~vavk~--------------l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl  188 (226)
                      .++|...+.||+|+||.||++..+  .+...+.|.              +.. ...........+.+|+.++.+++|+||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAK-RVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhH-HhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            467888899999999999998653  222222221              100 000111234568899999999999999


Q ss_pred             cceeeEEEeCCeEEEEEEccCCCChhhhccC
Q 040605          189 VKFYGFCSHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       189 v~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +++++++...+..++++|++. ++|.+++..
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~  255 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYD-FDLYSFMYD  255 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccc-cCHHHHHhh
Confidence            999999999999999999985 678877654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.78  E-value=7.7e-10  Score=92.14  Aligned_cols=95  Identities=34%  Similarity=0.488  Sum_probs=78.6

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|.....+|.|.+|.|||++. ..+...|+|.++. ...+   +......|+-+++.-+|+||+.++|-+...+..+|
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkL-ep~d---d~~~iqqei~~~~dc~h~nivay~gsylr~dklwi   89 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKL-EPGD---DFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWI   89 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeec-cCCc---cccccccceeeeecCCCcChHHHHhhhhhhcCcEE
Confidence            35677777899999999999965 4789999999976 2222   34667789999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCccc
Q 040605          204 VYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~~~  223 (226)
                      .||||.+|+|++.-|--.+.
T Consensus        90 cMEycgggslQdiy~~Tgpl  109 (829)
T KOG0576|consen   90 CMEYCGGGSLQDIYHVTGPL  109 (829)
T ss_pred             EEEecCCCcccceeeecccc
Confidence            99999999999876644433

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.78  E-value=1.5e-09  Score=86.77  Aligned_cols=94  Identities=27%  Similarity=0.329  Sum_probs=72.8

Q ss_pred             ccccceeccCCceeEEEE-EcCCCCeEEEEEecCCCCCCchh---hHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIA---DQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~-~~~~g~~vavk~l~~~~~~~~~~---~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~  202 (226)
                      |-..++||+|+|..||++ .+...+.||||.-.....+.+..   ..+...+|-++...+.||.||++++|+.- .+..+
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC  544 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence            445678999999999999 45677889999754322221111   13456789999999999999999999955 56788


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      -|+|||++-+|.-||..++
T Consensus       545 TVLEYceGNDLDFYLKQhk  563 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLKQHK  563 (775)
T ss_pred             eeeeecCCCchhHHHHhhh
Confidence            9999999999999998664

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.78  E-value=3.2e-08  Score=73.27  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCc----hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQ----IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~----~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .||+|+||.||++.+ +|..+++|..........    ......+.+|++++..++|+++.....++...+..+++|||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            379999999999985 678899998643111110    112356789999999999988776666666777789999999


Q ss_pred             CCCChhhhccC
Q 040605          209 ERGSLATNLSN  219 (226)
Q Consensus       209 ~~g~L~~~l~~  219 (226)
                      ++++|.+++..
T Consensus        80 ~g~~l~~~~~~   90 (199)
T TIGR03724        80 EGKPLKDVIEE   90 (199)
T ss_pred             CCccHHHHHhh
Confidence            99999988764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.77  E-value=3.7e-08  Score=74.49  Aligned_cols=80  Identities=30%  Similarity=0.498  Sum_probs=68.1

Q ss_pred             CceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCChhhh
Q 040605          138 GHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATN  216 (226)
Q Consensus       138 ~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~  216 (226)
                      +||.||++... +|..+++|.+.......   ..+.+.+|++.+++++|+|++++.+++......++++||+++++|.++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~   77 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKK---KRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDL   77 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccccc---HHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHH
Confidence            47899999876 58999999986522111   157899999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 040605          217 LSND  220 (226)
Q Consensus       217 l~~~  220 (226)
                      +...
T Consensus        78 ~~~~   81 (244)
T smart00220       78 LKKR   81 (244)
T ss_pred             HHhc
Confidence            8754

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.76  E-value=4.4e-08  Score=73.56  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHH------HHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKE------FLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~------~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      .++|...+++|.|+||.||.... ++..+|+|.++...... ......      |.+|+..+.+++|+++..+..+....
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~-~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRT-ERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCch-HHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            57788999999999999998755 57789999997522222 222223      68999999999999999998886533


Q ss_pred             --------CeEEEEEEccCCCChhhhc
Q 040605          199 --------RHSFLVYEYLERGSLATNL  217 (226)
Q Consensus       199 --------~~~~lv~e~~~~g~L~~~l  217 (226)
                              +..+|+|||+++.+|.++.
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~  134 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMP  134 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhh
Confidence                    3578999999999998874

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=1.1e-09  Score=91.08  Aligned_cols=83  Identities=24%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ..||.|+||.||++.-+ .+...|-|++..    .......+|+-|+++|+...||+||+|++.+.-.+..+|+.|||++
T Consensus        38 GELGDGAFGKVyKA~nket~~lAAaKvIet----kseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~G  113 (1187)
T KOG0579|consen   38 GELGDGAFGKVYKAVNKETKLLAAAKVIET----KSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGG  113 (1187)
T ss_pred             hhhcCccchhhhhhhcccchhhhhhhhhcc----cchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCC
Confidence            35899999999999765 445567777643    2233578999999999999999999999999999999999999999


Q ss_pred             CChhhhcc
Q 040605          211 GSLATNLS  218 (226)
Q Consensus       211 g~L~~~l~  218 (226)
                      |-....+-
T Consensus       114 GAVDaiml  121 (1187)
T KOG0579|consen  114 GAVDAIML  121 (1187)
T ss_pred             chHhHHHH
Confidence            98776654

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.73  E-value=3.3e-08  Score=75.24  Aligned_cols=75  Identities=19%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             CCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCChhh
Q 040605          137 GGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       137 g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~  215 (226)
                      |.+|.||++.. .++..+|+|+++..         ..+.+|...+....|||++++.+++...+..++++||+++|+|.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   74 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS---------SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWS   74 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch---------hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHH
Confidence            78899999966 47889999998651         123445555556679999999999999999999999999999999


Q ss_pred             hccCC
Q 040605          216 NLSND  220 (226)
Q Consensus       216 ~l~~~  220 (226)
                      ++...
T Consensus        75 ~l~~~   79 (237)
T cd05576          75 HISKF   79 (237)
T ss_pred             HHHHh
Confidence            98654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.72  E-value=5.6e-09  Score=78.71  Aligned_cols=94  Identities=21%  Similarity=0.333  Sum_probs=75.7

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCC----CchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCe
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPG----DQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARH  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~----~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~  200 (226)
                      .|...+++|.|..+.|.++..+ +|...|+|++......    ......++-.+|+.+++++ .||+|+.+.+.+.++..
T Consensus        18 ~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF   97 (411)
T KOG0599|consen   18 KYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAF   97 (411)
T ss_pred             hcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcch
Confidence            4556678999999999888654 7889999998642221    1112345677999999998 79999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++|+|.|+.|.|.|+|.+.
T Consensus        98 ~FlVFdl~prGELFDyLts~  117 (411)
T KOG0599|consen   98 VFLVFDLMPRGELFDYLTSK  117 (411)
T ss_pred             hhhhhhhcccchHHHHhhhh
Confidence            99999999999999999764

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.72  E-value=7.5e-08  Score=81.93  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEE-ecCCCCCC---chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKK-FHSPLPGD---QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~-l~~~~~~~---~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      +...+.||+|+||.||++.+.... +++|+ +.......   .....+.+.+|++++..++|++++....++...+..++
T Consensus       335 ~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l  413 (535)
T PRK09605        335 KIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTI  413 (535)
T ss_pred             cCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEE
Confidence            345678999999999999875443 44443 22111111   11123568899999999999999988888877778899


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      ||||+++++|.+++.
T Consensus       414 v~E~~~g~~L~~~l~  428 (535)
T PRK09605        414 VMEYIGGKDLKDVLE  428 (535)
T ss_pred             EEEecCCCcHHHHHH
Confidence            999999999999874

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.69  E-value=1e-07  Score=70.10  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCc--------------------hh--hHHHHHHHHHHHhcCCCCccc
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQ--------------------IA--DQKEFLAEIEALTKIRHRNIV  189 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~--------------------~~--~~~~~~~e~~~l~~l~h~nlv  189 (226)
                      ..||+|++|+||++...+|+.||||.++.......                    ..  ....+..|.+.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            46999999999999877899999999875321100                    00  012346889999999999886


Q ss_pred             ceeeEEEeCCeEEEEEEccCCCChhh
Q 040605          190 KFYGFCSHARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       190 ~l~g~~~~~~~~~lv~e~~~~g~L~~  215 (226)
                      ....+...  ..++||||++++++..
T Consensus        83 ~p~~~~~~--~~~lVmE~~~g~~~~~  106 (190)
T cd05145          83 VPEPILLK--KNVLVMEFIGDDGSPA  106 (190)
T ss_pred             CceEEEec--CCEEEEEEecCCCchh
Confidence            55544433  2489999999875543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.63  E-value=3.9e-09  Score=79.57  Aligned_cols=86  Identities=20%  Similarity=0.351  Sum_probs=70.4

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCC
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      .|.+...|..|+|++ .|..+++|.+.-...  .....++|..|...++-+.||||++++|.|..++...++..|||.|+
T Consensus       197 kl~e~hsgelwrgrw-qgndivakil~vr~~--t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  197 KLAESHSGELWRGRW-QGNDIVAKILNVREV--TARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhccCCCcccccccc-cCcchhhhhhhhhhc--chhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            477788899999988 466666777653111  11234789999999999999999999999999999999999999999


Q ss_pred             hhhhccCCc
Q 040605          213 LATNLSNDA  221 (226)
Q Consensus       213 L~~~l~~~~  221 (226)
                      |..+||+..
T Consensus       274 lynvlhe~t  282 (448)
T KOG0195|consen  274 LYNVLHEQT  282 (448)
T ss_pred             HHHHHhcCc
Confidence            999999764

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=4.4e-08  Score=80.36  Aligned_cols=92  Identities=22%  Similarity=0.324  Sum_probs=78.5

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|...+.||+|+...||++...+.+.+|+|++..  ...+.+....|.+|+..|.++ .|.+|++|++|-..++..||||
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~--~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm  439 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVL--LEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM  439 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHH--hhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence            4666778999999999999988888999998764  234445678999999999999 5999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||-+ -||..+|+...
T Consensus       440 E~Gd-~DL~kiL~k~~  454 (677)
T KOG0596|consen  440 ECGD-IDLNKILKKKK  454 (677)
T ss_pred             eccc-ccHHHHHHhcc
Confidence            9875 69999987543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.61  E-value=6.3e-08  Score=79.93  Aligned_cols=96  Identities=21%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC-CCchh---hHHHHHHHHHHHhcCC---CCcccceeeEEEe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP-GDQIA---DQKEFLAEIEALTKIR---HRNIVKFYGFCSH  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~-~~~~~---~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~  197 (226)
                      .+|+....+|+|+||.|+.+..+ +...|.||.+.+..- .+.+.   .......|+.+|+.++   |+||++++.+++.
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            45777889999999999999876 456899998865210 01110   1123568999999997   9999999999999


Q ss_pred             CCeEEEEEEcc-CCCChhhhccCCc
Q 040605          198 ARHSFLVYEYL-ERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~-~~g~L~~~l~~~~  221 (226)
                      .+..||++|-. ++-+|.++|..+.
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp  665 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP  665 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC
Confidence            99999999975 4559999987543

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.60  E-value=1.4e-08  Score=81.40  Aligned_cols=95  Identities=23%  Similarity=0.306  Sum_probs=78.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|..-++||+|+||.||-+..+ +|..+|.|++.+ ......+...--++|-.++.+++.+.||.+--.+.+++..++|
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~K-KRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDK-KRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHH-HHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            56788889999999999998665 799999998854 1111112334577899999999999999998888999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +..|.+|||+-+|.+.+
T Consensus       264 LtlMNGGDLkfHiyn~g  280 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHG  280 (591)
T ss_pred             EEeecCCceeEEeeccC
Confidence            99999999999998765

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.60  E-value=1.3e-08  Score=76.35  Aligned_cols=82  Identities=35%  Similarity=0.453  Sum_probs=66.7

Q ss_pred             cceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEEcc
Q 040605          131 KYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      ...||.|.||+|+|-.. +.|...|||+++...   .....++++.|.+...+- ..||||+++|.+-.++..||-||.|
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n---~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELM  145 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNN---IEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELM  145 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeecc---chHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHH
Confidence            34699999999999866 479999999997632   234568899999876555 7899999999999999999999999


Q ss_pred             CCCChhhh
Q 040605          209 ERGSLATN  216 (226)
Q Consensus       209 ~~g~L~~~  216 (226)
                      + -||..+
T Consensus       146 d-~SlDkl  152 (361)
T KOG1006|consen  146 D-ISLDKL  152 (361)
T ss_pred             h-hhHHHH
Confidence            7 466543

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=2.6e-08  Score=77.22  Aligned_cols=97  Identities=22%  Similarity=0.295  Sum_probs=78.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .+|....+||+|++++|..+.+. +.+.+|+|++++..... .++..+...|-.+.... +||.+|.+..++.++...+.
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nd-dedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVND-DEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCC-cccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            56888899999999999998775 67889999987632222 23456777787777766 79999999999999999999


Q ss_pred             EEEccCCCChhhhccCCccc
Q 040605          204 VYEYLERGSLATNLSNDAAA  223 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~~~  223 (226)
                      |.||.++|+|--+++..+..
T Consensus       329 vieyv~ggdlmfhmqrqrkl  348 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQRKL  348 (593)
T ss_pred             EEEEecCcceeeehhhhhcC
Confidence            99999999999888766543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.50  E-value=6.2e-07  Score=66.41  Aligned_cols=87  Identities=21%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCc-h-----------------hhHHHHHHHHHHHhcCCCCc--
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQ-I-----------------ADQKEFLAEIEALTKIRHRN--  187 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~-~-----------------~~~~~~~~e~~~l~~l~h~n--  187 (226)
                      +...+.||+|+||.||++..++|+.+|||+++.+..... .                 .....+..|...+..+.|++  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            556678999999999999888899999998764211000 0                 01123678888888887774  


Q ss_pred             ccceeeEEEeCCeEEEEEEccCCCChhhhcc
Q 040605          188 IVKFYGFCSHARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       188 lv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~  218 (226)
                      +.+.++    ....+++|||+++++|.+...
T Consensus        97 v~~~~~----~~~~~lv~e~~~g~~L~~~~~  123 (198)
T cd05144          97 VPKPID----WNRHAVVMEYIDGVELYRVRV  123 (198)
T ss_pred             CCceee----cCCceEEEEEeCCcchhhccc
Confidence            344433    244589999999999887653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.46  E-value=3.3e-08  Score=78.66  Aligned_cols=96  Identities=21%  Similarity=0.312  Sum_probs=75.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .+|....+||+|+||.|..+..+ +.+.+|||.++++.-.++ .+.+--+.|-++|+-. +-|.+++++.++.+.+..|.
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQd-DDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQD-DDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeec-CcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            45777889999999999999664 567899999976422221 1334456777788766 67899999999999999999


Q ss_pred             EEEccCCCChhhhccCCcc
Q 040605          204 VYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~~  222 (226)
                      ||||+.+|+|--+|+.-+.
T Consensus       428 VMEyvnGGDLMyhiQQ~Gk  446 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHIQQVGK  446 (683)
T ss_pred             EEEEecCchhhhHHHHhcc
Confidence            9999999999988875443

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.42  E-value=4.4e-07  Score=77.58  Aligned_cols=89  Identities=22%  Similarity=0.297  Sum_probs=58.4

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-C----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeE----
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-S----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGF----  194 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~----  194 (226)
                      ..++|...+.||+|+||.||+|... +    +..+|+|++...   .   ..+.+..|  .+....+.++..+...    
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~---~---~~e~~~~e--~l~~~~~~~~~~~~~~~~~~  201 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEY---G---AVEIWMNE--RVRRACPNSCADFVYGFLEP  201 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEeccc---c---hhHHHHHH--HHHhhchhhHHHHHHhhhcc
Confidence            3567889999999999999999775 4    689999987541   1   11222222  1222222222222111    


Q ss_pred             --EEeCCeEEEEEEccCCCChhhhccCC
Q 040605          195 --CSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       195 --~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                        +......++||||+++|+|.++++..
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~  229 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLMQSK  229 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHHHhc
Confidence              24456789999999999999998754

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=2.2e-07  Score=77.73  Aligned_cols=105  Identities=20%  Similarity=0.272  Sum_probs=80.6

Q ss_pred             ccHHHHHHHh---cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccce
Q 040605          116 FIYVEIIRAK---NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF  191 (226)
Q Consensus       116 ~~~~~l~~~~---~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l  191 (226)
                      ..|-.|.++.   .-|...+.||-|.||.|..+. ..+...+|+|.|++. +--..........|-.+|+....+-||+|
T Consensus       616 SnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKa-DVl~rnQvaHVKAERDILAEADn~WVVrL  694 (1034)
T KOG0608|consen  616 SNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKA-DVLMRNQVAHVKAERDILAEADNEWVVRL  694 (1034)
T ss_pred             hhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHH-HHHhhhhhhhhhhhhhhHhhcCCcceEEE
Confidence            3455555554   347788899999999999884 445667899998762 21111234457788999999999999999


Q ss_pred             eeEEEeCCeEEEEEEccCCCChhhhccCCc
Q 040605          192 YGFCSHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       192 ~g~~~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +-.+.+++.+|.||||+++||+-.+|-..+
T Consensus       695 yySFQDkdnLYFVMdYIPGGDmMSLLIrmg  724 (1034)
T KOG0608|consen  695 YYSFQDKDNLYFVMDYIPGGDMMSLLIRMG  724 (1034)
T ss_pred             EEEeccCCceEEEEeccCCccHHHHHHHhc
Confidence            988899999999999999999998876543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.36  E-value=4.3e-07  Score=72.15  Aligned_cols=94  Identities=24%  Similarity=0.340  Sum_probs=77.7

Q ss_pred             HHHHhcCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEE
Q 040605          121 IIRAKNDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFC  195 (226)
Q Consensus       121 l~~~~~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~  195 (226)
                      +....+.|...+.||+|.|++||++...    ....||+|.+....      ......+|+++|..+ .+.|++++.++.
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts------~p~ri~~El~~L~~~gG~~ni~~~~~~~  104 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS------SPSRILNELEMLYRLGGSDNIIKLNGCF  104 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc------CchHHHHHHHHHHHhccchhhhcchhhh
Confidence            3444566788889999999999999653    46789999986521      235689999999999 599999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccCC
Q 040605          196 SHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++..+|+||+++-+-.+++++-
T Consensus       105 rnnd~v~ivlp~~~H~~f~~l~~~l  129 (418)
T KOG1167|consen  105 RNNDQVAIVLPYFEHDRFRDLYRSL  129 (418)
T ss_pred             ccCCeeEEEecccCccCHHHHHhcC
Confidence            9999999999999999888877643

>smart00090 RIO RIO-like kinase

Probab=98.33  E-value=2.6e-06  Score=64.83  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             ccccceeccCCceeEEEEE--cCCCCeEEEEEecCCCCCC------------------ch-h-hHHHHHHHHHHHhcCCC
Q 040605          128 FDAKYCIGNGGHGSVYKAE--LPSGEFLAVKKFHSPLPGD------------------QI-A-DQKEFLAEIEALTKIRH  185 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~--~~~g~~vavk~l~~~~~~~------------------~~-~-~~~~~~~e~~~l~~l~h  185 (226)
                      |...+.||+|+||.||+|.  ..+|..||+|.++......                  .. . ....+..|...+.++.+
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5566789999999999998  5689999999987421100                  00 0 11345689999999975


Q ss_pred             Ccc--cceeeEEEeCCeEEEEEEccCCCChhhhc
Q 040605          186 RNI--VKFYGFCSHARHSFLVYEYLERGSLATNL  217 (226)
Q Consensus       186 ~nl--v~l~g~~~~~~~~~lv~e~~~~g~L~~~l  217 (226)
                      ..+  .+++++    ...++||||+++++|..++
T Consensus       110 ~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~  139 (237)
T smart00090      110 AGVPVPKPIAW----RRNVLVMEFIGGDGLPAPR  139 (237)
T ss_pred             cCCCCCeeeEe----cCceEEEEEecCCcccccc
Confidence            432  233332    2358999999998887654

>PLN03150 hypothetical protein; Provisional

Probab=98.32  E-value=8.6e-07  Score=76.69  Aligned_cols=48  Identities=27%  Similarity=0.582  Sum_probs=29.6

Q ss_pred             CCCCceeeccccceeeecCCCcc--ccccCcccccCCCCCCCCCCCCCccC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTA--FRNAPLESLKGNKGLCGSVKGLQTCK   49 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~--~~~~~~~~~~gN~~Lcg~~~~~~~c~   49 (226)
                      |++|+.|||++|+|+|.+|....  +.......+.+|+.+|+.+ +...|.
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~l~~C~  538 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACG  538 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC-CCCCCc
Confidence            35566666666666666665421  1223345688999999864 345674

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.28  E-value=2.1e-07  Score=68.74  Aligned_cols=84  Identities=20%  Similarity=0.414  Sum_probs=69.2

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCC--eE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHAR--HS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~--~~  201 (226)
                      ++|...+.+|+|.++.|+.|. ..+.+.++||.+++ .      ..+...+|+.++..++ ||||++|++...++.  ..
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP-V------kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP-V------KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeech-H------HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            456666789999999999994 56788999999975 1      3467899999999996 999999999987654  56


Q ss_pred             EEEEEccCCCChhhh
Q 040605          202 FLVYEYLERGSLATN  216 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~  216 (226)
                      .+++||..|-+....
T Consensus       111 aLiFE~v~n~Dfk~l  125 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQL  125 (338)
T ss_pred             hhHhhhhccccHHHH
Confidence            899999998876554

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.28  E-value=6.3e-07  Score=76.87  Aligned_cols=84  Identities=23%  Similarity=0.381  Sum_probs=68.1

Q ss_pred             ccccceeccCCcee-EEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEE
Q 040605          128 FDAKYCIGNGGHGS-VYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       128 ~~~~~~lg~g~~g~-v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      |+..+++|.|+-|+ ||+|.+ +|+.||||++-.    .   ...-..+|+..+..- .|||||+.++.-......||..
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~----e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIal  582 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE----E---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIAL  582 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhh----H---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEe
Confidence            45567899999886 789988 789999999843    1   223456899999888 6999999887667778899999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      |.|. .+|.+++...
T Consensus       583 ELC~-~sL~dlie~~  596 (903)
T KOG1027|consen  583 ELCA-CSLQDLIESS  596 (903)
T ss_pred             hHhh-hhHHHHHhcc
Confidence            9996 8999999864

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.26  E-value=2.1e-07  Score=71.21  Aligned_cols=82  Identities=21%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe----CCeEEEEE
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH----ARHSFLVY  205 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~----~~~~~lv~  205 (226)
                      .+||-|--|.|..+..+ +++..|+|.+..         .....+|+++.... .|+|||++++++..    ..-.++||
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~D---------s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLD---------SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhc---------CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeee
Confidence            47999999999999654 789999999864         24567888886665 79999999998855    24578999


Q ss_pred             EccCCCChhhhccCCcc
Q 040605          206 EYLERGSLATNLSNDAA  222 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~~  222 (226)
                      |.|++|.|...+.+++.
T Consensus       139 E~meGGeLfsriq~~g~  155 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGD  155 (400)
T ss_pred             ecccchHHHHHHHHccc
Confidence            99999999999987654

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.20  E-value=5.2e-06  Score=58.04  Aligned_cols=78  Identities=18%  Similarity=0.133  Sum_probs=62.8

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC--CcccceeeEEEeCCeEEEEEEcc
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH--RNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h--~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .+.+|+|.++.||++...+ ..+++|.......      ...+..|...+..++|  .++.+++++....+..++++||+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK------GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            3568999999999998744 7899998754211      3578899999999976  58888888887778899999999


Q ss_pred             CCCChhh
Q 040605          209 ERGSLAT  215 (226)
Q Consensus       209 ~~g~L~~  215 (226)
                      +++.+..
T Consensus        76 ~g~~~~~   82 (155)
T cd05120          76 EGETLDE   82 (155)
T ss_pred             CCeeccc
Confidence            9887764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.17  E-value=1.3e-05  Score=59.35  Aligned_cols=82  Identities=10%  Similarity=0.017  Sum_probs=59.7

Q ss_pred             ccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCC-chhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEc
Q 040605          130 AKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-QIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~-~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ....|++|+||+||...- .+..++.+.+.. .... ..-...-|.+|+++|.++. |+++.+++++    +..+++|||
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~-~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSA-APWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeeccccc-chhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            345799999999997655 677888777754 1111 0001235889999999995 5888888876    446999999


Q ss_pred             cCCCChhhhc
Q 040605          208 LERGSLATNL  217 (226)
Q Consensus       208 ~~~g~L~~~l  217 (226)
                      +++.+|.+.+
T Consensus        80 I~G~~L~~~~   89 (218)
T PRK12274         80 LAGAAMYQRP   89 (218)
T ss_pred             ecCccHHhhh
Confidence            9998997654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.16  E-value=4.3e-06  Score=69.31  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhh------------------------------------HHHHH
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD------------------------------------QKEFL  174 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~------------------------------------~~~~~  174 (226)
                      .+.+|.|++|+||+|++.+|+.||||+.+......-..+                                    .-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            357999999999999999999999999865321100000                                    01245


Q ss_pred             HHHHHHhcC----CCCcccceeeEEE-eCCeEEEEEEccCCCChhhhcc
Q 040605          175 AEIEALTKI----RHRNIVKFYGFCS-HARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       175 ~e~~~l~~l----~h~nlv~l~g~~~-~~~~~~lv~e~~~~g~L~~~l~  218 (226)
                      +|++.+.++    +|.+-+.+-..+. .....+|||||+++++|.+++.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~  250 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAA  250 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHH
Confidence            565555544    2333333333332 2455799999999999988764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.14  E-value=1.7e-07  Score=70.92  Aligned_cols=91  Identities=25%  Similarity=0.407  Sum_probs=71.5

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----CeEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----RHSF  202 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~~~~  202 (226)
                      ..++-||-|.||.||..+.+ +|+.||.|++..  ........+.+.+|+.++.-++|.|+++.++.-..+     ++.|
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pn--vfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPN--VFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcch--HHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            33456999999999998765 899999999864  222334568899999999999999999999877554     3578


Q ss_pred             EEEEccCCCChhhhccCCcc
Q 040605          203 LVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +++|.|. .+|+..|-+..+
T Consensus       134 V~TELmQ-SDLHKIIVSPQ~  152 (449)
T KOG0664|consen  134 VLTELMQ-SDLHKIIVSPQA  152 (449)
T ss_pred             HHHHHHH-hhhhheeccCCC
Confidence            8999986 688888766544

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=4.4e-08  Score=73.18  Aligned_cols=88  Identities=31%  Similarity=0.434  Sum_probs=66.2

Q ss_pred             ccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--------Ce
Q 040605          130 AKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--------RH  200 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--------~~  200 (226)
                      ....+|+|.||.||++... .|..||+|++--...  .......-++|+.++..+.|+|++.++..|.+.        ..
T Consensus        21 k~~kigqGtfgeVFkAr~~n~~kkvalkkvlmene--KeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   21 KLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHhcCCchHHHHHHHhhcCccchhHHHHHHHhcc--ccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            3457999999999999765 677889887532111  111335678999999999999999999998542        24


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++|+++|++ +|...|.+.
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~  117 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNR  117 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCc
Confidence            7999999985 788877654

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.05  E-value=1.9e-05  Score=57.71  Aligned_cols=76  Identities=22%  Similarity=0.237  Sum_probs=47.4

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHH---------------------HHHHHHHHHhcCCCCc--c
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQK---------------------EFLAEIEALTKIRHRN--I  188 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~---------------------~~~~e~~~l~~l~h~n--l  188 (226)
                      +.||+|+||+||++...+|+.||||.+....... .....                     ....|...+..+.+..  +
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSF-KKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccch-hhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            5699999999999988889999999886421111 00011                     1134555555554432  3


Q ss_pred             cceeeEEEeCCeEEEEEEccCCCC
Q 040605          189 VKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       189 v~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      .+.+++    ...+++|||+++|+
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~  101 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDG  101 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCC
Confidence            333332    24589999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PHA02882 putative serine/threonine kinase; Provisional

Probab=98.03  E-value=4.4e-05  Score=60.02  Aligned_cols=92  Identities=23%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             cCccccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchh-------hHHHHHHHHHHHhcCCCCcccceeeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIA-------DQKEFLAEIEALTKIRHRNIVKFYGF  194 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~-------~~~~~~~e~~~l~~l~h~nlv~l~g~  194 (226)
                      ..|...+.||+|+||.||++...+    +..+++|...........+       .......+...+..+.|+|++++.++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            457778899999999999997653    3456666543211110000       00122334455667899999999998


Q ss_pred             EEeCC----eEEEEEEccCCCChhhhcc
Q 040605          195 CSHAR----HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       195 ~~~~~----~~~lv~e~~~~g~L~~~l~  218 (226)
                      +....    ..++++|++. .++.+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFK  118 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHH
Confidence            76543    4567888764 35555544

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.97  E-value=1.6e-05  Score=64.76  Aligned_cols=89  Identities=21%  Similarity=0.343  Sum_probs=69.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-----C---CcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-----H---RNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-----h---~nlv~l~g~~~  196 (226)
                      ..|...+.||=|.|.+||.+.. .+.+.||+|+.+..     .+..+.-+.|+++|.+++     |   ..||+|++.+.
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-----qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-----QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-----hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            4577888999999999999965 46789999998751     124577889999998874     2   36899999884


Q ss_pred             e----CCeEEEEEEccCCCChhhhccCC
Q 040605          197 H----ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       197 ~----~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      -    +.+.+||+|++ +-+|..+|...
T Consensus       153 hsGpNG~HVCMVfEvL-GdnLLklI~~s  179 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVL-GDNLLKLIKYS  179 (590)
T ss_pred             ecCCCCcEEEEEehhh-hhHHHHHHHHh
Confidence            3    35789999999 46888888643

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.97  E-value=3.3e-06  Score=66.55  Aligned_cols=91  Identities=24%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CC-----cccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HR-----NIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----nlv~l~g~~~~  197 (226)
                      ++.|.....+|+|.||.|.++... .+..||+|.++. ...    -.++-+.|++++.+|. +.     -+|.+.+++.-
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~-V~k----YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy  162 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN-VDK----YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY  162 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHH-HHH----HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc
Confidence            456777788999999999999653 578999999875 211    3467788999999983 22     35677888888


Q ss_pred             CCeEEEEEEccCCCChhhhccCCc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++.+||+|.| +-|+.++|.+++
T Consensus       163 rghiCivfell-G~S~~dFlk~N~  185 (415)
T KOG0671|consen  163 RGHICIVFELL-GLSTFDFLKENN  185 (415)
T ss_pred             cCceEEEEecc-ChhHHHHhccCC
Confidence            99999999988 359999998643

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.93  E-value=5.8e-06  Score=62.70  Aligned_cols=90  Identities=22%  Similarity=0.367  Sum_probs=68.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeE-EEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGF-CSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~-~~~~~~~~  202 (226)
                      +.|...+.+|+|.||.+..+..+ ..+.+++|.++.+.     ...++|.+|..---.+ .|.||+.-+.. +.+.+...
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-----tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Yv   98 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-----TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYV   98 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-----hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEE
Confidence            34677788999999999999776 56789999886521     1358899998654455 58999976544 45667778


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||+|.|||..-+...
T Consensus        99 F~qE~aP~gdL~snv~~~  116 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNVEAA  116 (378)
T ss_pred             EeeccCccchhhhhcCcc
Confidence            999999999999877643

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.93  E-value=1.7e-05  Score=67.03  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             CccccceeccCCceeEEEEEcCC-CCeEEEEEecCCCCCC-------------------------c-h----hhH-----
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGD-------------------------Q-I----ADQ-----  170 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~-g~~vavk~l~~~~~~~-------------------------~-~----~~~-----  170 (226)
                      +|+. +.+|+|++|+||++.+++ |+.||||++++.....                         + .    +..     
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~  199 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHD  199 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence            4555 679999999999999987 9999999997532100                         0 0    001     


Q ss_pred             -HHHHHHHHHHhcC----CCCcccceeeEEEe-CCeEEEEEEccCCCChhhh
Q 040605          171 -KEFLAEIEALTKI----RHRNIVKFYGFCSH-ARHSFLVYEYLERGSLATN  216 (226)
Q Consensus       171 -~~~~~e~~~l~~l----~h~nlv~l~g~~~~-~~~~~lv~e~~~~g~L~~~  216 (226)
                       -+|.+|+.-+.++    .+.+.+.+-..+++ ....+|||||++++.+.++
T Consensus       200 ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        200 ELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             hhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence             1244455444433    24444444444433 4567899999999999874

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.89  E-value=0.00013  Score=57.29  Aligned_cols=90  Identities=32%  Similarity=0.528  Sum_probs=71.9

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCC-cccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR-NIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~-nlv~l~g~~~~~~~~~lv~e  206 (226)
                      |.....+|.|+|+.||++...  ..+++|.+....... ......|.+|+..+..+.|+ +++++...+......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESK-SKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccc-hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            344567899999999999775  788999986522221 12467899999999999988 79999999977777899999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+.++++.+++...
T Consensus        79 ~~~~~~l~~~~~~~   92 (384)
T COG0515          79 YVDGGSLEDLLKKI   92 (384)
T ss_pred             cCCCCcHHHHHHhc
Confidence            99999999777643

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=2.1e-05  Score=70.06  Aligned_cols=88  Identities=26%  Similarity=0.395  Sum_probs=63.4

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC---CCcccceeeEEEeCCeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIVKFYGFCSHARHS  201 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~~~~~  201 (226)
                      .+.|.....+|+|++|+||+|...+|..||+|.-+++..+.       |.-=..++.+|+   -+.++.+..+..-.+.-
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE-------fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S  769 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE-------FYICLQVMERLKPQMLPSIMHISSAHVFQNAS  769 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee-------eeehHHHHHhhchhhhcchHHHHHHHccCCcc
Confidence            35677888999999999999988889999999977644332       222223344444   23344444455556778


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      ++|+||.+.|+|.+++..
T Consensus       770 ~lv~ey~~~Gtlld~~N~  787 (974)
T KOG1166|consen  770 VLVSEYSPYGTLLDLINT  787 (974)
T ss_pred             eeeeeccccccHHHhhcc
Confidence            999999999999999873

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=97.73  E-value=2.3e-06  Score=70.07  Aligned_cols=96  Identities=20%  Similarity=0.255  Sum_probs=76.0

Q ss_pred             ccccceeccCCceeEEEEEcCCC-CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSG-EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g-~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +.....||-|+||.|=....... ...|+|.+++ ...-+....+....|-.+|...+.|.||+++--+.+....|++||
T Consensus       422 l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK-~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  422 LKRIATLGVGGFGRVELVKVNSQKATFALKILKK-KHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhcccCccceEEEEEecccchHHHHHHHhH-hhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            33445799999999988766433 2478888765 222223345678899999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCCcccc
Q 040605          207 YLERGSLATNLSNDAAAE  224 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~~~~  224 (226)
                      -|-+|.|+..|++.+.++
T Consensus       501 aClGGElWTiLrdRg~Fd  518 (732)
T KOG0614|consen  501 ACLGGELWTILRDRGSFD  518 (732)
T ss_pred             hhcCchhhhhhhhcCCcc
Confidence            999999999999876654

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.71  E-value=2.1e-05  Score=59.80  Aligned_cols=75  Identities=23%  Similarity=0.467  Sum_probs=61.6

Q ss_pred             ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEccC
Q 040605          132 YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      ..||.|..|+|+++..+ .|..+|||.+...   +..+..+..+..++++..-+ .|.||+.+||+......+|-||.|.
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt---~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRT---GNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeeccc---CCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            45899999999999775 6899999999752   22335677888888877664 8999999999999999999999885

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.65  E-value=0.00013  Score=54.66  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-CcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l~g~~~~~~~~~l  203 (226)
                      ..|...+.||.|+||.+|.|. ..+|..||+|.=+.. ..     .-...-|..+.+.++| ..|..+.-+..+...-.+
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~-a~-----hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvl   88 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK-AK-----HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVL   88 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeeccc-CC-----CcchhHHHHHHHHhccCCCCchhhhhcccccccee
Confidence            457778899999999999994 578999999985431 11     1346778888888865 566666667777888899


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      |||.. +.+|++...
T Consensus        89 VMdLL-GPsLEdLfn  102 (341)
T KOG1163|consen   89 VMDLL-GPSLEDLFN  102 (341)
T ss_pred             eeecc-CccHHHHHH
Confidence            99988 578888754

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.59  E-value=4.7e-05  Score=55.71  Aligned_cols=86  Identities=24%  Similarity=0.388  Sum_probs=66.8

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHh-cCCCCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT-KIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~-~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++.....||+|++|.|-+-++ .+|...|+|+++.+..   .+..+..++|+.+.. ....|..|+++|........+|-
T Consensus        47 ~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn---~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIc  123 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN---SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWIC  123 (282)
T ss_pred             hhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcC---hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEe
Confidence            334445699999999877655 4899999999975332   235677888987754 56899999999999999999999


Q ss_pred             EEccCCCChhhh
Q 040605          205 YEYLERGSLATN  216 (226)
Q Consensus       205 ~e~~~~g~L~~~  216 (226)
                      ||.|+ -||..+
T Consensus       124 ME~M~-tSldkf  134 (282)
T KOG0984|consen  124 MELMD-TSLDKF  134 (282)
T ss_pred             HHHhh-hhHHHH
Confidence            99997 466654

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=97.57  E-value=0.00045  Score=52.75  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             ceec-cCCceeEEEEEcCCCCeEEEEEecCCC------CC---CchhhHHHHHHHHHHHhcCCCCcc--cceeeEEEeCC
Q 040605          132 YCIG-NGGHGSVYKAELPSGEFLAVKKFHSPL------PG---DQIADQKEFLAEIEALTKIRHRNI--VKFYGFCSHAR  199 (226)
Q Consensus       132 ~~lg-~g~~g~v~~~~~~~g~~vavk~l~~~~------~~---~~~~~~~~~~~e~~~l~~l~h~nl--v~l~g~~~~~~  199 (226)
                      .++| .|+.|++|.... .+..+++|......      ..   .+......+.+|++++..++|+++  ...+++.....
T Consensus        37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            4687 899999999877 47788888774210      00   001123568899999999998885  66777654322


Q ss_pred             ----eEEEEEEccCC-CChhhhccCC
Q 040605          200 ----HSFLVYEYLER-GSLATNLSND  220 (226)
Q Consensus       200 ----~~~lv~e~~~~-g~L~~~l~~~  220 (226)
                          ..++|+||+++ .+|.+++.+.
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~  141 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEA  141 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcC
Confidence                23599999997 6999887653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.55  E-value=4.6e-05  Score=63.90  Aligned_cols=89  Identities=24%  Similarity=0.332  Sum_probs=69.5

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      ++.|.....+|.|+|+.+-++.. .+++..+||.+....        ..-..|+.++... +|+|++++.+.+....+.+
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~--------~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~  392 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA--------DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIY  392 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc--------cccccccchhhhhcCCCcceeecceecCCceee
Confidence            34566666799999999998865 478889999986521        1233566555544 7999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +|||++.+|-|.+.+...+
T Consensus       393 ~v~e~l~g~ell~ri~~~~  411 (612)
T KOG0603|consen  393 LVMELLDGGELLRRIRSKP  411 (612)
T ss_pred             eeehhccccHHHHHHHhcc
Confidence            9999999999888776543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.50  E-value=0.00033  Score=52.40  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=61.6

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCC--cccceeeEEEeC---CeEEEEEE
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR--NIVKFYGFCSHA---RHSFLVYE  206 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~--nlv~l~g~~~~~---~~~~lv~e  206 (226)
                      ..++.|..+.+|+....+|..+++|........   .....+.+|.+++..+++.  ++.+++.+....   +..+++||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~---~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e   80 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL---PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVME   80 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC---cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEE
Confidence            358899999999998877789999987542111   1235788999999998764  456677776553   25689999


Q ss_pred             ccCCCChhhhc
Q 040605          207 YLERGSLATNL  217 (226)
Q Consensus       207 ~~~~g~L~~~l  217 (226)
                      |++++++.+.+
T Consensus        81 ~i~G~~l~~~~   91 (223)
T cd05154          81 RVDGRVLRDRL   91 (223)
T ss_pred             EeCCEecCCCC
Confidence            99999888765

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.29  E-value=0.0011  Score=52.92  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             CccccceeccCCceeEEEEEcCCC--CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC----CcccceeeEE-EeCC
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSG--EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH----RNIVKFYGFC-SHAR  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g--~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h----~nlv~l~g~~-~~~~  199 (226)
                      .|.....||+|+||.||.+.....  ..+|+|.-.......    ...+..|..++..+.+    +++..++... ....
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc
Confidence            678888999999999999976443  478888765421111    1257778888887763    5777887777 4667


Q ss_pred             eEEEEEEccCCCChhhhccC
Q 040605          200 HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ..+|||+.. +-+|.++...
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~  113 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKR  113 (322)
T ss_pred             eeEEEEecc-CccHHHHHHh
Confidence            889999977 5799987643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.19  E-value=0.00016  Score=33.06  Aligned_cols=18  Identities=44%  Similarity=0.700  Sum_probs=16.4

Q ss_pred             CCceeeccccceeeecCCC
Q 040605            3 GLLFIDISYNDLQGLIPNS   21 (226)
Q Consensus         3 ~L~~ldls~N~L~G~iP~~   21 (226)
                      +|+.||||+|+|+ .||..
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            5899999999999 99985

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=97.13  E-value=0.00014  Score=56.56  Aligned_cols=87  Identities=22%  Similarity=0.329  Sum_probs=62.6

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------Ce
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------RH  200 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------~~  200 (226)
                      |.....+|.|.= .|..+.. -.+++||+|++..+  .......+.-.+|..+|..+.|+|+++++.++...      .+
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~p--f~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRP--FQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCc--cccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            333344555554 3443322 26889999998653  22233457788999999999999999999998653      35


Q ss_pred             EEEEEEccCCCChhhhcc
Q 040605          201 SFLVYEYLERGSLATNLS  218 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~  218 (226)
                      .++|||||. ++|.+.++
T Consensus        96 ~y~v~e~m~-~nl~~vi~  112 (369)
T KOG0665|consen   96 VYLVMELMD-ANLCQVIL  112 (369)
T ss_pred             HHHHHHhhh-hHHHHHHH
Confidence            799999997 79998876

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.01  E-value=0.002  Score=46.05  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccc-eeeEEEeCCeEEEEEEccCCC
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK-FYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~-l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      .++.|.++.+|+.... +..+++|.......     ....+..|+..+..+.+.++++ ++.+  .....++||||+++.
T Consensus         5 ~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~~~~~~P~~~~~--~~~~~~lv~e~i~G~   76 (170)
T cd05151           5 PLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-----LLINRENEAENSKLAAEAGIGPKLYYF--DPETGVLITEFIEGS   76 (170)
T ss_pred             ecCCcccCceEEEEEC-CeEEEEEeCCCCcc-----cccCHHHHHHHHHHHHHhCCCCceEEE--eCCCCeEEEEecCCC
Confidence            5788999999998864 77899998654111     1235678888888886655553 4433  233458999999998


Q ss_pred             Chhh
Q 040605          212 SLAT  215 (226)
Q Consensus       212 ~L~~  215 (226)
                      ++.+
T Consensus        77 ~l~~   80 (170)
T cd05151          77 ELLT   80 (170)
T ss_pred             cccc
Confidence            8864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=96.81  E-value=0.0011  Score=55.06  Aligned_cols=96  Identities=23%  Similarity=0.307  Sum_probs=72.4

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC------CCccc
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR------HRNIV  189 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~------h~nlv  189 (226)
                      .+.|+..  ..|......|+|-|++|.+|.. ..|..||||.++..     ....+.=+.|+++|.++.      --+.+
T Consensus       425 ~igE~LD--~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN-----E~M~KtGl~EleiLkKL~~AD~Edk~Hcl  497 (752)
T KOG0670|consen  425 RIGELLD--SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN-----EVMHKTGLKELEILKKLNDADPEDKFHCL  497 (752)
T ss_pred             ehhhhhc--ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc-----hHHhhhhhHHHHHHHHhhccCchhhhHHH
Confidence            3344433  4466666789999999999965 46889999999751     113456678999999885      23778


Q ss_pred             ceeeEEEeCCeEEEEEEccCCCChhhhccCC
Q 040605          190 KFYGFCSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       190 ~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +++..+...++++||+|-+. -+|.++|..-
T Consensus       498 rl~r~F~hknHLClVFE~Ls-lNLRevLKKy  527 (752)
T KOG0670|consen  498 RLFRHFKHKNHLCLVFEPLS-LNLREVLKKY  527 (752)
T ss_pred             HHHHHhhhcceeEEEehhhh-chHHHHHHHh
Confidence            88888888999999999886 6899988754

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.75  E-value=0.0032  Score=49.58  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=58.2

Q ss_pred             CccccceeccCCceeEEEE-EcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~-~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +|...+.||+|+||.++.| .+-+++.||||-=.. ...     .-.+..|-+..+.+ ..++|...+-+-..+.+-.||
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr-kS~-----APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLV  102 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR-KSE-----APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILV  102 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccc-cCC-----cchHHHHHHHHHHHcCCCCCCceeeeccccchhhhh
Confidence            5778889999999999999 456899999996432 111     12344455554444 456777665444555677899


Q ss_pred             EEccCCCChhhhcc
Q 040605          205 YEYLERGSLATNLS  218 (226)
Q Consensus       205 ~e~~~~g~L~~~l~  218 (226)
                      +|.+ +-+|+|+..
T Consensus       103 idLL-GPSLEDLFD  115 (449)
T KOG1165|consen  103 IDLL-GPSLEDLFD  115 (449)
T ss_pred             hhhh-CcCHHHHHH
Confidence            9988 568888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.29  E-value=0.014  Score=53.71  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             CCCCceeeccccceeeecCCCcc-ccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTA-FRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~-~~~~~~~~~~gN~   36 (226)
                      |++|+.||||+|+++|.+|.... +.......+.+|+
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence            34566666666666666665321 2223333444555

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=96.04  E-value=0.0073  Score=51.14  Aligned_cols=86  Identities=20%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHH------------------------------------HHHH
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQK------------------------------------EFLA  175 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~------------------------------------~~~~  175 (226)
                      +-++.++.|+||+|++.+|+.||||+.++.....-..+..                                    +|.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            4689999999999999999999999987642211000000                                    1234


Q ss_pred             HHHHHhcC----CCCcccceeeEEE-eCCeEEEEEEccCCCChhhhc
Q 040605          176 EIEALTKI----RHRNIVKFYGFCS-HARHSFLVYEYLERGSLATNL  217 (226)
Q Consensus       176 e~~~l~~l----~h~nlv~l~g~~~-~~~~~~lv~e~~~~g~L~~~l  217 (226)
                      |+.-+.++    ++..-+.+-..++ -.....|+|||++|-.+.+..
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~  257 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIA  257 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHH
Confidence            44333332    2222233333443 356789999999988888873

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.98  E-value=0.004  Score=26.39  Aligned_cols=14  Identities=36%  Similarity=0.439  Sum_probs=9.8

Q ss_pred             CCCceeecccccee
Q 040605            2 QGLLFIDISYNDLQ   15 (226)
Q Consensus         2 ~~L~~ldls~N~L~   15 (226)
                      ++|+.||||+|+|+
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            57999999999986

...

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.94  E-value=0.028  Score=40.61  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCC
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      ...|++|+++.||.|.+. |..+|+|.-+.++      ....+..|++++..+.-.++.+=+=.   -+...+.|||..+
T Consensus        27 ~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds------~r~~l~kEakiLeil~g~~~~p~vy~---yg~~~i~me~i~G   96 (201)
T COG2112          27 EKELAKGTTSVVYLGEWR-GGEVALKVRRRDS------PRRNLEKEAKILEILAGEGVTPEVYF---YGEDFIRMEYIDG   96 (201)
T ss_pred             hhhhhcccccEEEEeecc-CceEEEEEecCCc------chhhHHHHHHHHHHhhhcCCCceEEE---echhhhhhhhhcC
Confidence            346999999999999884 5588999865421      35789999999988876666542211   1234456999987


Q ss_pred             CChhhhcc
Q 040605          211 GSLATNLS  218 (226)
Q Consensus       211 g~L~~~l~  218 (226)
                      -.|.++-.
T Consensus        97 ~~L~~~~~  104 (201)
T COG2112          97 RPLGKLEI  104 (201)
T ss_pred             cchhhhhh
Confidence            78877544

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.72  E-value=0.016  Score=49.11  Aligned_cols=30  Identities=33%  Similarity=0.292  Sum_probs=27.2

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCC
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSP  161 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~  161 (226)
                      .-|+..+.|+||++++++|+.||||+.+++
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~  196 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPG  196 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcC
Confidence            468999999999999999999999998764

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.68  E-value=0.0032  Score=42.54  Aligned_cols=29  Identities=28%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecC
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHS  160 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~  160 (226)
                      .-++.++.|+||+|++++|+.||||..++
T Consensus        17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP   45 (119)
T PF03109_consen   17 EPLASASIAQVHRARLKDGEEVAVKVQRP   45 (119)
T ss_pred             chhhheehhhheeeeecccchhhhhhcch
Confidence            46999999999999999999999999876

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=95.66  E-value=0.018  Score=48.28  Aligned_cols=74  Identities=24%  Similarity=0.305  Sum_probs=53.6

Q ss_pred             ceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCeEEEEEEccCC-CC
Q 040605          139 HGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARHSFLVYEYLER-GS  212 (226)
Q Consensus       139 ~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~~~lv~e~~~~-g~  212 (226)
                      -.+.||+... ||..++.|+++.....    .......-+++++++.|.|+|++..++.+    +...++||+|.|+ ++
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~----~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~T  364 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQ----STNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPT  364 (655)
T ss_pred             cceeEeeeeccCCceeeeeeecccccc----CcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCch
Confidence            3568888664 8999999999542111    12234455778899999999999998863    3578999999985 36


Q ss_pred             hhhh
Q 040605          213 LATN  216 (226)
Q Consensus       213 L~~~  216 (226)
                      |.++
T Consensus       365 L~d~  368 (655)
T KOG3741|consen  365 LYDL  368 (655)
T ss_pred             HHHH
Confidence            6664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.65  E-value=0.02  Score=31.12  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=22.4

Q ss_pred             CCCceeeccccceeeecCC-CccccccCcccccCCC
Q 040605            2 QGLLFIDISYNDLQGLIPN-STAFRNAPLESLKGNK   36 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~-~~~~~~~~~~~~~gN~   36 (226)
                      ++|+.|++++|+++ .||. ...+.......+.+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCC
Confidence            47999999999999 5776 4445555555666664

...

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.65  E-value=0.059  Score=46.44  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=49.8

Q ss_pred             CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccCCCChhhhcc
Q 040605          148 PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       148 ~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~  218 (226)
                      .++.+|.|...+....    .......+.+..|+.+|||||++++......+..|||+|-+-  -|..++.
T Consensus        35 ~~~~~vsVF~~~~~~~----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk   99 (690)
T KOG1243|consen   35 ADGGPVSVFVYKRSNG----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLK   99 (690)
T ss_pred             ccCCceEEEEEeCCCc----hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHH
Confidence            4788898888765221    134556778888999999999999999999999999999874  3554444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.60  E-value=0.017  Score=26.74  Aligned_cols=19  Identities=21%  Similarity=0.155  Sum_probs=13.3

Q ss_pred             CCCCceeeccccceeeecC
Q 040605            1 MQGLLFIDISYNDLQGLIP   19 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP   19 (226)
                      +++|+.|||++|++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHH
Confidence            5789999999999987543

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=94.41  E-value=0.0052  Score=55.64  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHH--HhcCCCCcccceeeEEEeCCeEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEA--LTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~--l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++...+.||++.|=+|.+++.++|. |+||++-+..+.-   ..+.|.++++-  ..-.+|||.+++.-.-.+....|||
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~---sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTI---SLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCC---CchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHH
Confidence            4566678999999999999988887 8899885433333   34455544443  4455899999987766666777888


Q ss_pred             EEccCCCChhhhcc
Q 040605          205 YEYLERGSLATNLS  218 (226)
Q Consensus       205 ~e~~~~g~L~~~l~  218 (226)
                      -+|..+ +|+|.|.
T Consensus       100 Rqyvkh-nLyDRlS  112 (1431)
T KOG1240|consen  100 RQYVKH-NLYDRLS  112 (1431)
T ss_pred             HHHHhh-hhhhhhc
Confidence            888864 7888775

>PRK10593 hypothetical protein; Provisional

Probab=94.36  E-value=0.27  Score=38.92  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC---CcccceeeEEEe---CCeEE
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH---RNIVKFYGFCSH---ARHSF  202 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h---~nlv~l~g~~~~---~~~~~  202 (226)
                      .....||.|..+.||+-...++ .+.+|..+.  . .   ....|..|.+.++.+.-   -.+.++++.|..   .+..+
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~-~---~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~   89 (297)
T PRK10593         17 SRVECISEQPYAALWALYDSQG-NPMPLMARS--F-S---TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDV   89 (297)
T ss_pred             heeeecCCccceeEEEEEcCCC-CEEEEEecc--c-c---cchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeE
Confidence            3445699999999999876556 455665322  0 0   12578899999988743   356677877754   36689


Q ss_pred             EEEEccCCCChhh
Q 040605          203 LVYEYLERGSLAT  215 (226)
Q Consensus       203 lv~e~~~~g~L~~  215 (226)
                      ||||+++++++.+
T Consensus        90 LVmE~i~G~~~~~  102 (297)
T PRK10593         90 LLLERLRGVSVEA  102 (297)
T ss_pred             EEEeccCCEecCC
Confidence            9999999887654

>PLN02876 acyl-CoA dehydrogenase

Probab=94.34  E-value=0.23  Score=45.12  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=54.8

Q ss_pred             ceeccCCceeEEEEEcCCC---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcc--cceeeEEEeC---CeEE
Q 040605          132 YCIGNGGHGSVYKAELPSG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNI--VKFYGFCSHA---RHSF  202 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nl--v~l~g~~~~~---~~~~  202 (226)
                      ..++.|.+..+|+....++   ..+++|+......   ......+.+|.++|..+. |.++  .+++++|.+.   +..+
T Consensus        44 ~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~---~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~f  120 (822)
T PLN02876         44 SQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKL---LQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAF  120 (822)
T ss_pred             EEeCCCCcCceEEEEECCCCcceeEEEEeCCCCcc---CccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCce
Confidence            4578888889998776543   3567776543111   112357889999999985 6665  6777777654   4678


Q ss_pred             EEEEccCCCChh
Q 040605          203 LVYEYLERGSLA  214 (226)
Q Consensus       203 lv~e~~~~g~L~  214 (226)
                      +||||+++..+.
T Consensus       121 lVME~v~G~~~~  132 (822)
T PLN02876        121 YIMEYLEGRIFV  132 (822)
T ss_pred             EEEEecCCcccC
Confidence            999999965443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.03  E-value=0.037  Score=26.14  Aligned_cols=17  Identities=35%  Similarity=0.497  Sum_probs=14.7

Q ss_pred             CCCCceeeccccceeee
Q 040605            1 MQGLLFIDISYNDLQGL   17 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~   17 (226)
                      |++|+.|+|++|+++--
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            68999999999998753

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.03  E-value=0.037  Score=26.14  Aligned_cols=17  Identities=35%  Similarity=0.497  Sum_probs=14.7

Q ss_pred             CCCCceeeccccceeee
Q 040605            1 MQGLLFIDISYNDLQGL   17 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~   17 (226)
                      |++|+.|+|++|+++--
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            68999999999998753

>PLN03150 hypothetical protein; Provisional

Probab=94.01  E-value=0.048  Score=47.73  Aligned_cols=21  Identities=43%  Similarity=0.805  Sum_probs=13.7

Q ss_pred             CCCCceeeccccceeeecCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS   21 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~   21 (226)
                      |++|+.||||+|+|+|.+|..
T Consensus       465 l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        465 ITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             CCCCCEEECCCCCCCCCCchH
Confidence            356666777777777776653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=93.94  E-value=0.0094  Score=50.56  Aligned_cols=86  Identities=22%  Similarity=0.326  Sum_probs=64.6

Q ss_pred             eccCCceeEEEEE----cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEcc
Q 040605          134 IGNGGHGSVYKAE----LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       134 lg~g~~g~v~~~~----~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      +|+|.||.|+.+.    ...|..+|+|.+........  .......|..++..++ ||.+|++.-.+.++...+++.+|.
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~--~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~   79 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVR--DRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL   79 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccc--cccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence            6889999888552    23466788888765322221  1125667778888886 999999998899999999999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      -+|+|...+.+..
T Consensus        80 rgg~lft~l~~~~   92 (612)
T KOG0603|consen   80 RGGDLFTRLSKEV   92 (612)
T ss_pred             ccchhhhccccCC
Confidence            9999998887654

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.58  E-value=0.45  Score=34.82  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchh-----hHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIA-----DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~-----~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      .+.+|+-..+|.+.+ -|..+.+|.-.+ .......     ....-.+|++++.+++--.|....=+..+++...|+|||
T Consensus         3 ~i~~GAEa~i~~~~~-~g~~av~K~Ri~-K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           3 LIKQGAEAIIYLTDF-LGLPAVVKERIP-KRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             hhhCCcceeEEeeec-cCcceEEEeecC-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            467888889998866 454556664321 1111111     124567999999998766776666667778888999999


Q ss_pred             cCCCChhhhccCC
Q 040605          208 LERGSLATNLSND  220 (226)
Q Consensus       208 ~~~g~L~~~l~~~  220 (226)
                      .++-.|.++|...
T Consensus        81 I~G~~lkd~l~~~   93 (204)
T COG3642          81 IEGELLKDALEEA   93 (204)
T ss_pred             eCChhHHHHHHhc
Confidence            9988888888765

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=92.75  E-value=0.21  Score=25.80  Aligned_cols=8  Identities=13%  Similarity=0.185  Sum_probs=3.1

Q ss_pred             HHHHHhhc
Q 040605           82 IFFIFQKR   89 (226)
Q Consensus        82 ~~~~~~~r   89 (226)
                      .+.+++||
T Consensus        25 ~YaCcykk   32 (38)
T PF02439_consen   25 YYACCYKK   32 (38)
T ss_pred             HHHHHHcc
Confidence            33334433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=92.74  E-value=0.028  Score=46.81  Aligned_cols=74  Identities=26%  Similarity=0.464  Sum_probs=56.5

Q ss_pred             HHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          121 IIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       121 l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      +.+-.++|....++|.|+||+|+.+... ++...|||++.....   .....+..+|+..++++.|++++++.-.+..
T Consensus        44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~---e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   44 TSREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNR---EESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhhhccccccccccccCccccCCccccccchhhHHHHhcccch---hhhhhhhhccccchhhhcccchhhheeceec
Confidence            3344577888899999999999998765 455899999864222   2245678899999999999999987666543

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=92.61  E-value=1.2  Score=36.88  Aligned_cols=85  Identities=22%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             ceeccCCceeEEEEEcCCC-CeEEEEEecCCCC--CCc-hhhHHHHHHHHHHHhcCC---CCcccceeeEEEeCCeEEEE
Q 040605          132 YCIGNGGHGSVYKAELPSG-EFLAVKKFHSPLP--GDQ-IADQKEFLAEIEALTKIR---HRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g-~~vavk~l~~~~~--~~~-~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..+|.|.+..||+....+| ..+.||.-.....  ... ......+..|.+.|..+.   ...+.+++.+  .++..++|
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEEE
Confidence            3689999999999988877 4899997532111  011 113456777888877752   2345555544  44667899


Q ss_pred             EEccCCCC-hhhhcc
Q 040605          205 YEYLERGS-LATNLS  218 (226)
Q Consensus       205 ~e~~~~g~-L~~~l~  218 (226)
                      |||+++.. +.+.|.
T Consensus       110 ME~L~~~~~lr~~Ll  124 (401)
T PRK09550        110 MEDLSDHKILRKGLI  124 (401)
T ss_pred             EecCCCccHHHHHHh
Confidence            99998654 444444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.56  E-value=0.062  Score=25.43  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=14.6

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      .+|+.|++|+|+|+. +|.
T Consensus         2 ~~L~~L~vs~N~Lt~-LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTS-LPE   19 (26)
T ss_pred             cccceeecCCCcccc-Ccc
Confidence            478999999999975 454

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=92.18  E-value=0.41  Score=35.53  Aligned_cols=86  Identities=24%  Similarity=0.459  Sum_probs=58.8

Q ss_pred             cCccccceeccCCc-eeEEEEEcCCCCeEEEEEecC---CCC--------CCch------hhHHHHHHHHHHHhcCC---
Q 040605          126 NDFDAKYCIGNGGH-GSVYKAELPSGEFLAVKKFHS---PLP--------GDQI------ADQKEFLAEIEALTKIR---  184 (226)
Q Consensus       126 ~~~~~~~~lg~g~~-g~v~~~~~~~g~~vavk~l~~---~~~--------~~~~------~~~~~~~~e~~~l~~l~---  184 (226)
                      .++.....||.|.. |.||+... +|..+|+|....   ...        ....      .....|..|.+..++++   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            56777788999999 99999988 688999999221   000        0000      12346889999888774   


Q ss_pred             CCcc--cceeeEEEeC------------------CeEEEEEEccCCCC
Q 040605          185 HRNI--VKFYGFCSHA------------------RHSFLVYEYLERGS  212 (226)
Q Consensus       185 h~nl--v~l~g~~~~~------------------~~~~lv~e~~~~g~  212 (226)
                      +.++  |+.+||..-.                  ....||.||.+...
T Consensus       116 ~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~  163 (207)
T PF13095_consen  116 REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP  163 (207)
T ss_pred             ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc
Confidence            4566  8999988322                  12368999887654

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=92.12  E-value=0.075  Score=46.90  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=25.2

Q ss_pred             ccHHHHHHHhcCccccceeccCCceeEEEEEc
Q 040605          116 FIYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL  147 (226)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~  147 (226)
                      +..+|+....+ ....+.+|+|+||+||.|.-
T Consensus       985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen  985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred             CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence            55577777666 78888999999999999854

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=92.03  E-value=0.05  Score=33.35  Aligned_cols=16  Identities=19%  Similarity=0.281  Sum_probs=10.7

Q ss_pred             cccHHHHHHHhcCccc
Q 040605          115 KFIYVEIIRAKNDFDA  130 (226)
Q Consensus       115 ~~~~~~l~~~~~~~~~  130 (226)
                      ..+|+|-.+|-.+|..
T Consensus        56 P~TYEDP~qAV~eFAk   71 (75)
T PF14575_consen   56 PHTYEDPNQAVREFAK   71 (75)
T ss_dssp             GGGSSSHHHHHHHCSS
T ss_pred             cccccCHHHHHHHHHh
Confidence            4677777777666653

...

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=91.75  E-value=0.78  Score=33.94  Aligned_cols=76  Identities=21%  Similarity=0.284  Sum_probs=47.5

Q ss_pred             ceeccCCceeEEEEEcCC-------CCeEEEEEecCCCCC---------Cc---------hhhHHH----HHHHHHHHhc
Q 040605          132 YCIGNGGHGSVYKAELPS-------GEFLAVKKFHSPLPG---------DQ---------IADQKE----FLAEIEALTK  182 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~-------g~~vavk~l~~~~~~---------~~---------~~~~~~----~~~e~~~l~~  182 (226)
                      ..||+|.-+.||.|.-.+       +..+|||.-+.....         ++         ....+.    -.+|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999996543       478999976431100         00         001122    2388888888


Q ss_pred             CCC--CcccceeeEEEeCCeEEEEEEccCCC
Q 040605          183 IRH--RNIVKFYGFCSHARHSFLVYEYLERG  211 (226)
Q Consensus       183 l~h--~nlv~l~g~~~~~~~~~lv~e~~~~g  211 (226)
                      +..  -++..++++    ..-+|||||+.++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~  109 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDD  109 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCC
Confidence            753  344455543    4568999999764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=91.72  E-value=1.1  Score=33.02  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCC---chh-hHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD---QIA-DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~---~~~-~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      ...+-+|+-+.|+++.+ .|+...||.-....-..   +.+ ..+...+|++.+.+.+--.|....=++.+...-.|+||
T Consensus        12 l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   12 LELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             ceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            45688999999999987 67777777542201111   111 23567899999998876566655556666777789999


Q ss_pred             ccCC-CChhhhccC
Q 040605          207 YLER-GSLATNLSN  219 (226)
Q Consensus       207 ~~~~-g~L~~~l~~  219 (226)
                      |.++ -++.+++..
T Consensus        91 ~~~g~~~vk~~i~~  104 (229)
T KOG3087|consen   91 FIDGASTVKDFILS  104 (229)
T ss_pred             eccchhHHHHHHHH
Confidence            9974 378887764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.53  E-value=0.12  Score=24.94  Aligned_cols=14  Identities=36%  Similarity=0.394  Sum_probs=12.4

Q ss_pred             CCCceeecccccee
Q 040605            2 QGLLFIDISYNDLQ   15 (226)
Q Consensus         2 ~~L~~ldls~N~L~   15 (226)
                      ++|+.||||+|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57999999999984

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.35  E-value=0.15  Score=24.22  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=13.2

Q ss_pred             CCCCceeecccccee
Q 040605            1 MQGLLFIDISYNDLQ   15 (226)
Q Consensus         1 l~~L~~ldls~N~L~   15 (226)
                      |++|+.|+|++|.++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            578999999999884

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=91.11  E-value=0.19  Score=29.15  Aligned_cols=18  Identities=39%  Similarity=0.517  Sum_probs=13.1

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      ++|+.|++++|+++. ||.
T Consensus         1 p~L~~L~l~~n~l~~-i~~   18 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPP   18 (61)
T ss_dssp             TTESEEEETSSTESE-ECT
T ss_pred             CcCcEEECCCCCCCc-cCH
Confidence            467888888888884 443

...

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=90.92  E-value=0.29  Score=33.57  Aligned_cols=6  Identities=17%  Similarity=1.160  Sum_probs=2.7

Q ss_pred             EEEehh
Q 040605           62 WLIIVF   67 (226)
Q Consensus        62 ~~~i~~   67 (226)
                      |+++++
T Consensus         2 W~l~~i    7 (130)
T PF12273_consen    2 WVLFAI    7 (130)
T ss_pred             eeeHHH
Confidence            444433

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=90.34  E-value=0.19  Score=27.20  Aligned_cols=15  Identities=20%  Similarity=0.372  Sum_probs=13.9

Q ss_pred             CCCCceeecccccee
Q 040605            1 MQGLLFIDISYNDLQ   15 (226)
Q Consensus         1 l~~L~~ldls~N~L~   15 (226)
                      |++|+.||+++|+++
T Consensus        23 l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   23 LPNLETLNLSNNPIS   37 (44)
T ss_dssp             CTTSSEEEETSSCCS
T ss_pred             CCCCCEEEecCCCCC
Confidence            688999999999998

...

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=90.29  E-value=0.15  Score=35.55  Aligned_cols=11  Identities=9%  Similarity=0.537  Sum_probs=5.5

Q ss_pred             cCccccceecc
Q 040605          126 NDFDAKYCIGN  136 (226)
Q Consensus       126 ~~~~~~~~lg~  136 (226)
                      ++|....-||.
T Consensus       112 ~~y~s~splg~  122 (154)
T PF04478_consen  112 DKYESNSPLGS  122 (154)
T ss_pred             cccccCCCCCC
Confidence            44555555554

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=90.24  E-value=1.6  Score=33.01  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcc--cceeeEEEeCCeEEEEEEccC
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI--VKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl--v~l~g~~~~~~~~~lv~e~~~  209 (226)
                      ..+++|..+.+|+.   .|..+++|..+..   .   ......+|.+.+..+..-.+  .+.++++...+...++||+++
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~---~---~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~   77 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPG---F---DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIV   77 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCC---C---CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecC
Confidence            35899999999984   2455667765431   1   23456889988888764444  466667666677788999999


Q ss_pred             CCC
Q 040605          210 RGS  212 (226)
Q Consensus       210 ~g~  212 (226)
                      +.+
T Consensus        78 G~~   80 (226)
T TIGR02172        78 GKR   80 (226)
T ss_pred             Ccc
Confidence            763

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=89.34  E-value=1.5  Score=34.27  Aligned_cols=82  Identities=26%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             ccceeccCCceeEEEEEcCCCCeEEEEEecCCC----------------CCCch--hhHHHHHHHHHHHhcCCCC--ccc
Q 040605          130 AKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPL----------------PGDQI--ADQKEFLAEIEALTKIRHR--NIV  189 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~----------------~~~~~--~~~~~~~~e~~~l~~l~h~--nlv  189 (226)
                      ..+.||-|.-+.||.|..+.|.++|||-=+...                ...++  .......+|.+.|.++...  .+.
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            346799999999999999999999998422110                00000  0223457888888888644  444


Q ss_pred             ceeeEEEeCCeEEEEEEccCCCChhh
Q 040605          190 KFYGFCSHARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       190 ~l~g~~~~~~~~~lv~e~~~~g~L~~  215 (226)
                      +.+++    +.-.+||||.++-.|..
T Consensus       175 ~P~~~----nRHaVvMe~ieG~eL~~  196 (304)
T COG0478         175 KPIAW----NRHAVVMEYIEGVELYR  196 (304)
T ss_pred             Ccccc----ccceeeeehcccceeec
Confidence            44432    34679999998755543

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=88.86  E-value=2.3  Score=32.34  Aligned_cols=69  Identities=19%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             eeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEccCCCChhhh
Q 040605          140 GSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEYLERGSLATN  216 (226)
Q Consensus       140 g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~  216 (226)
                      ..||+...+ +..+.+|..... .      .....+|++++..+. +--+.+++++....+..++||||+++.+|.+.
T Consensus        13 ~~v~~~~~~-~~~~~vk~~~~~-~------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~   82 (244)
T cd05150          13 ATVYRLDGK-NPGLYLKIAPSG-P------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAAL   82 (244)
T ss_pred             CeEEEEcCC-CCcEEEEecCCC-c------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHh
Confidence            668888664 467888876431 1      234667888877763 33344666666655678999999998777654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=88.65  E-value=3.5  Score=30.57  Aligned_cols=89  Identities=21%  Similarity=0.329  Sum_probs=59.4

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCC------------chhhHHHHHHHHHHHhcCC------CCcccc
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD------------QIADQKEFLAEIEALTKIR------HRNIVK  190 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~------------~~~~~~~~~~e~~~l~~l~------h~nlv~  190 (226)
                      +....||+|+.-.+|.  .++....+||++.......            .....+++.+|+.-...+.      +..|.+
T Consensus         4 ~~~~~i~~G~~R~cy~--HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r   81 (199)
T PF10707_consen    4 SESDLIAQGGERDCYQ--HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPR   81 (199)
T ss_pred             CCCcccccCCCceEEE--CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccccccc
Confidence            3456799999988885  4567778899887532000            0012355666665544444      888999


Q ss_pred             eeeEEEeCCeEEEEEEccC--CC----ChhhhccC
Q 040605          191 FYGFCSHARHSFLVYEYLE--RG----SLATNLSN  219 (226)
Q Consensus       191 l~g~~~~~~~~~lv~e~~~--~g----~L~~~l~~  219 (226)
                      ++|+..+.-..-+|+|..-  .|    +|.+++.+
T Consensus        82 ~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~  116 (199)
T PF10707_consen   82 FYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE  116 (199)
T ss_pred             EeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc
Confidence            9999999888888888863  22    56677653

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=87.65  E-value=0.68  Score=34.20  Aligned_cols=11  Identities=0%  Similarity=-0.109  Sum_probs=5.5

Q ss_pred             CeEEEEEEccC
Q 040605          199 RHSFLVYEYLE  209 (226)
Q Consensus       199 ~~~~lv~e~~~  209 (226)
                      ...|-+|||--
T Consensus       207 SD~yS~~~c~~  217 (221)
T PF08374_consen  207 SDPYSDSSCST  217 (221)
T ss_pred             CCccccccccc
Confidence            34555555543

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=87.28  E-value=0.14  Score=44.63  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             ccceeccCCceeEEEEEcC-CCCeEEEEEecCC--CCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          130 AKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSP--LPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~--~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      ...++|.|.+|.++..... .....+.|.....  ...........+..|..+-..++|+|++..+..+.......-.||
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE  401 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME  401 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence            4567899999966655332 2333333322100  011111122336678888888999999877776665555555599


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++ ||...+.+.
T Consensus       402 ~~~~-Dlf~~~~~~  414 (601)
T KOG0590|consen  402 YCPY-DLFSLVMSN  414 (601)
T ss_pred             cccH-HHHHHHhcc
Confidence            9998 999988764

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.27  E-value=0.53  Score=39.99  Aligned_cols=91  Identities=23%  Similarity=0.213  Sum_probs=61.6

Q ss_pred             hcCccccceeccCCceeEEEEEc--CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL--PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~--~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      +.+|.....||.+.|+.+++...  .++..+++|.+....... ..+ .--..|+-+...+ .|.+.+.....+..-...
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~-~~d-i~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~  341 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF-ASD-IFSLGEVILEAILGSHLPSVGKNSSWSQLRQG  341 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccch-Hhh-hcchhhhhHhhHhhcccccCCCCCCccccccc
Confidence            45678888899999999998854  367789999886532221 111 1123344444444 577778766666666777


Q ss_pred             EEEEEccCCCChhhhc
Q 040605          202 FLVYEYLERGSLATNL  217 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l  217 (226)
                      ++--||++++++...+
T Consensus       342 ~ip~e~~~~~s~~l~~  357 (524)
T KOG0601|consen  342 YIPLEFCEGGSSSLRS  357 (524)
T ss_pred             cCchhhhcCcchhhhh
Confidence            8999999999887654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=86.75  E-value=4.6  Score=29.65  Aligned_cols=64  Identities=25%  Similarity=0.351  Sum_probs=38.0

Q ss_pred             EEEEEcCCCCeEEEEEecCCCCC---------------------Cch-hhHHHHHHHHHHHhcCCCCc--ccceeeEEEe
Q 040605          142 VYKAELPSGEFLAVKKFHSPLPG---------------------DQI-ADQKEFLAEIEALTKIRHRN--IVKFYGFCSH  197 (226)
Q Consensus       142 v~~~~~~~g~~vavk~l~~~~~~---------------------~~~-~~~~~~~~e~~~l~~l~h~n--lv~l~g~~~~  197 (226)
                      ||.|..++|..+|+|.-+.....                     .+. ....+..+|.+.|.++...+  +.+++.+  .
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--~   79 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--N   79 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--E
T ss_pred             EEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--e
Confidence            88888888999999976432100                     000 02345679999999997664  4444433  2


Q ss_pred             CCeEEEEEEccC
Q 040605          198 ARHSFLVYEYLE  209 (226)
Q Consensus       198 ~~~~~lv~e~~~  209 (226)
                        .-.|||||++
T Consensus        80 --~~~ivME~I~   89 (188)
T PF01163_consen   80 --RNVIVMEYIG   89 (188)
T ss_dssp             --TTEEEEE--E
T ss_pred             --CCEEEEEecC
Confidence              3479999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=85.93  E-value=0.28  Score=42.81  Aligned_cols=88  Identities=23%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             ccccceeccCCceeEEEEEcC--CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP--SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~--~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv  204 (226)
                      |.....+|+|.|+.+-.....  ....+|+|.+....  ...........|..+-..+. |+|++++++....++..++.
T Consensus        22 ~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~   99 (601)
T KOG0590|consen   22 YKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLS   99 (601)
T ss_pred             ccccccccccccchhhhhhhcCCCcceeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCCCcccccc
Confidence            333445899999988766443  34456666664321  11112333445666666665 99999999999999999999


Q ss_pred             EEccCCCChhhhc
Q 040605          205 YEYLERGSLATNL  217 (226)
Q Consensus       205 ~e~~~~g~L~~~l  217 (226)
                      .+|.++|++.+.+
T Consensus       100 ~~~s~g~~~f~~i  112 (601)
T KOG0590|consen  100 LSYSDGGSLFSKI  112 (601)
T ss_pred             cCccccccccccc
Confidence            9999999999888

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.90  E-value=0.37  Score=39.46  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=25.5

Q ss_pred             CCCCceeeccccceeeecCCCccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~   36 (226)
                      |.+|..||||+|.++|--|+-+.+ ........|||
T Consensus       274 LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            457889999999999977765444 45555677886

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=84.79  E-value=4  Score=32.19  Aligned_cols=75  Identities=21%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC---CCcccceeeEEEeCCeEEEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .....++-|....+|+.. .++..+.||.-.. .      ....|..|.+-|..+.   --.+.+.+++....+..++++
T Consensus        20 ~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~~-~------~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLll   91 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD-TDGGSYFVKVNSE-S------GRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLL   91 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE-TTS-EEEEEEEEG-G------GCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEE
T ss_pred             eeeEecCCCChhheEEEE-CCCccEEEEecCh-h------hHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEE
Confidence            344568888888888877 5788999998642 1      2245788888777763   345668888887777789999


Q ss_pred             EccCCC
Q 040605          206 EYLERG  211 (226)
Q Consensus       206 e~~~~g  211 (226)
                      ||++.+
T Consensus        92 e~l~~~   97 (288)
T PF03881_consen   92 EFLEMG   97 (288)
T ss_dssp             E-----
T ss_pred             EeecCC
Confidence            999876

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=84.53  E-value=0.81  Score=38.91  Aligned_cols=88  Identities=28%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             ccceecc--CCceeEEEEEc---CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          130 AKYCIGN--GGHGSVYKAEL---PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       130 ~~~~lg~--g~~g~v~~~~~---~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ...-+|.  |.+|.+|.+..   .++..+|+|+-+....  .......=.+|+....++ .|+|.++....+...+..++
T Consensus       118 ~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s--~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  118 ISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFS--PPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccCCCCCceeecccCCcccCCcccccccccCCCC--CccccccccchhhcccccCccccccccCcccccCCccee
Confidence            3446888  99999999865   4788899998543211  111233445677777777 49999998888999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      -+|++. .+|.++-+..
T Consensus       196 qtE~~~-~sl~~~~~~~  211 (524)
T KOG0601|consen  196 QTELCG-ESLQSYCHTP  211 (524)
T ss_pred             eecccc-chhHHhhhcc
Confidence            999986 7888877643

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.02  E-value=1.5  Score=29.60  Aligned_cols=6  Identities=33%  Similarity=0.207  Sum_probs=3.0

Q ss_pred             hhcccc
Q 040605           87 QKRTLD   92 (226)
Q Consensus        87 ~~r~~~   92 (226)
                      .-||++
T Consensus        87 ~irR~~   92 (122)
T PF01102_consen   87 CIRRLR   92 (122)
T ss_dssp             HHHHHS
T ss_pred             HHHHHh
Confidence            335555

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=83.67  E-value=0.32  Score=38.78  Aligned_cols=41  Identities=29%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             HhcCCCCcccceeeEEEeC-----CeEEEEEEccCCCChhhhccCC
Q 040605          180 LTKIRHRNIVKFYGFCSHA-----RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       180 l~~l~h~nlv~l~g~~~~~-----~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +-.+-|.|||+++.|+.+.     .....+.|||+.|+|.++|++-
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt  166 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRT  166 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHH
Confidence            3445699999999998654     3467899999999999999853

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=83.29  E-value=8.9  Score=28.40  Aligned_cols=77  Identities=14%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCC--cccceeeEEEe---CCeEEEEEE
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR--NIVKFYGFCSH---ARHSFLVYE  206 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~--nlv~l~g~~~~---~~~~~lv~e  206 (226)
                      +.++.|..+.+|+....+ ..+++|....    .  ........|..++..+...  .+.+++.++..   ....+++|+
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~----~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~   75 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRP----P--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLME   75 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESS----H--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEE
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCC----C--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEE
Confidence            357888889999998866 6899998654    1  2346777888888777433  34566654433   345789999


Q ss_pred             ccCCCChhh
Q 040605          207 YLERGSLAT  215 (226)
Q Consensus       207 ~~~~g~L~~  215 (226)
                      |+++..+..
T Consensus        76 ~i~g~~~~~   84 (239)
T PF01636_consen   76 YIPGRPLDD   84 (239)
T ss_dssp             EESSEEHHH
T ss_pred             Eeccccccc
Confidence            999887776

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.29  E-value=5.7  Score=30.45  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC---CcccceeeEEEeCCeEEEEEEccCCCChh
Q 040605          149 SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH---RNIVKFYGFCSHARHSFLVYEYLERGSLA  214 (226)
Q Consensus       149 ~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h---~nlv~l~g~~~~~~~~~lv~e~~~~g~L~  214 (226)
                      ...++.||.-..       .....|..|+.-|..+.-   -++.+.+..-.+..+.++|+||++-|.+.
T Consensus        38 g~~~~FvK~n~~-------~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          38 GTDPFFVKCNQR-------EQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             CCcceEEEecch-------hhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence            446788886422       134678888877665533   44566676777788999999999987665

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=83.25  E-value=0.57  Score=31.40  Aligned_cols=10  Identities=10%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q 040605           69 LLGALFTSIV   78 (226)
Q Consensus        69 ~~~~~~~~~~   78 (226)
                      +.++++++.+
T Consensus        85 al~v~lVl~l   94 (129)
T PF12191_consen   85 ALSVVLVLAL   94 (129)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=82.90  E-value=7.1  Score=29.63  Aligned_cols=89  Identities=20%  Similarity=0.234  Sum_probs=57.3

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEc--CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccc---eeeE
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAEL--PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK---FYGF  194 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~--~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~---l~g~  194 (226)
                      ++.++.-.....+.+|.-+-|.+-.+..  .|...|.||.=+.       ...+-|.-|+.-|..++.-+.|.   .+.+
T Consensus         3 e~l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~-------~~~~mfeGE~~sLeAi~sT~tv~vprpikv   75 (313)
T KOG3021|consen    3 ELLRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRS-------IARDMFEGELASLEAIQSTETVLVPRPIKV   75 (313)
T ss_pred             HHHHHhcCcceeeeecCCCCceeccccccccCCccEEEEeccc-------cchHHHhhHHHHHHHHHhcCceecCCceee
Confidence            3444444455556677755566666532  2556788887432       13567889998888887666653   3444


Q ss_pred             EEe-CCeEEEEEEccCCCChhh
Q 040605          195 CSH-ARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       195 ~~~-~~~~~lv~e~~~~g~L~~  215 (226)
                      ... .+..++||||++-+.|..
T Consensus        76 id~p~Ggs~lime~idf~~lr~   97 (313)
T KOG3021|consen   76 IDLPGGGSSLIMEHIDFQGLRS   97 (313)
T ss_pred             EecCCCceeeeeehhhcccchh
Confidence            444 567889999998776654

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=81.80  E-value=3.3  Score=32.59  Aligned_cols=56  Identities=27%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR  184 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~  184 (226)
                      +.....||.|+++.||.++.. +++.+|+|...... .......+++.+|.-....+.
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~-~~~~~~~~~~~~e~l~~~~~~   70 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA-DASANEYEQLKEEQLAITLFP   70 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESS-TTHTTHHHHHHHHHHGGGGST
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEeccc-ccchHHHHHHHHHHHHhhhhc
Confidence            344568999999999999775 68999999986533 233335677888876665543

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=81.76  E-value=3.4  Score=35.90  Aligned_cols=7  Identities=29%  Similarity=0.510  Sum_probs=3.5

Q ss_pred             CCcccce
Q 040605          185 HRNIVKF  191 (226)
Q Consensus       185 h~nlv~l  191 (226)
                      |+|=+++
T Consensus       515 yRNKlRl  521 (684)
T PF12877_consen  515 YRNKLRL  521 (684)
T ss_pred             HHHHHHH
Confidence            4555544

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=81.56  E-value=14  Score=28.87  Aligned_cols=85  Identities=18%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCch-------hhHHHHHHHHHHHhcCCCCcc--cceeeEEEe-----C
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI-------ADQKEFLAEIEALTKIRHRNI--VKFYGFCSH-----A  198 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~nl--v~l~g~~~~-----~  198 (226)
                      ++-+.....|++..+ +|..+.||.........-.       .....+.+|...+.++...+|  ..++++...     .
T Consensus        29 ~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~  107 (268)
T PRK15123         29 VFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPAT  107 (268)
T ss_pred             EEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCcc
Confidence            344333444667665 6778999976331100000       011247788888877743333  344555543     2


Q ss_pred             CeEEEEEEccCCC-Chhhhcc
Q 040605          199 RHSFLVYEYLERG-SLATNLS  218 (226)
Q Consensus       199 ~~~~lv~e~~~~g-~L~~~l~  218 (226)
                      ...++|+|++++- +|.+++.
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~  128 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCA  128 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHH
Confidence            3578999999976 8988875

>PF15102 TMEM154: TMEM154 protein family

Probab=80.89  E-value=1.6  Score=30.35  Aligned_cols=15  Identities=13%  Similarity=0.363  Sum_probs=8.9

Q ss_pred             EehhhHHHHHHHHHH
Q 040605           64 IIVFHLLGALFTSIV   78 (226)
Q Consensus        64 ~i~~~~~~~~~~~~~   78 (226)
                      .++.+++..++++++
T Consensus        57 fiLmIlIP~VLLvlL   71 (146)
T PF15102_consen   57 FILMILIPLVLLVLL   71 (146)
T ss_pred             eEEEEeHHHHHHHHH
Confidence            377777775554443

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=80.69  E-value=1.6  Score=34.48  Aligned_cols=7  Identities=14%  Similarity=0.050  Sum_probs=2.7

Q ss_pred             Hhhcccc
Q 040605           86 FQKRTLD   92 (226)
Q Consensus        86 ~~~r~~~   92 (226)
                      ++||+++
T Consensus       280 RYRRKKK  286 (299)
T PF02009_consen  280 RYRRKKK  286 (299)
T ss_pred             HHHHHhh
Confidence            3344333

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=80.33  E-value=0.62  Score=36.09  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=15.2

Q ss_pred             CCccEEEehhhHHHHHHHHHHHHHHHHHH
Q 040605           58 FGTKWLIIVFHLLGALFTSIVLTAIFFIF   86 (226)
Q Consensus        58 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   86 (226)
                      +.+.|.++++.++|++++.++.++++++.
T Consensus       209 ~~~~W~iv~g~~~G~~~L~ll~~lv~~~v  237 (278)
T PF06697_consen  209 RSWWWKIVVGVVGGVVLLGLLSLLVAMLV  237 (278)
T ss_pred             cceeEEEEEEehHHHHHHHHHHHHHHhhh
Confidence            44455556555666666555544444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-10
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-08
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-08
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-07
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-07
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-07
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-07
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		6e-07
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		6e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		7e-07
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		8e-06
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-05
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		3e-05
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		3e-05
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		3e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		3e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		3e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		4e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		4e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		4e-05
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		8e-05
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		1e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		2e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		2e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		2e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		2e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		2e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		2e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		3e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		3e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		3e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		3e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		3e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		3e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		3e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		3e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		3e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		3e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		4e-04
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		4e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		4e-04
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		5e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		5e-04
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		5e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		5e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		5e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		5e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		5e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		5e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		5e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		6e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		6e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		6e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		6e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		6e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		6e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		6e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		6e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		7e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		7e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-04
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		8e-04
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		8e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		9e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 115 KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSP-LPGDQIADQKEF 173
           +F   E+  A ++F  K  +G GG G VYK  L  G  +AVK+       G ++    +F
Sbjct: 19  RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGEL----QF 74
Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
             E+E ++   HRN+++  GFC       LVY Y+  GS+A+ L
Sbjct: 75  QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 118

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 115 KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSP-LPGDQIADQKEF 173
           +F   E+  A ++F  K  +G GG G VYK  L  G  +AVK+       G ++    +F
Sbjct: 27  RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGEL----QF 82
Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
             E+E ++   HRN+++  GFC       LVY Y+  GS+A+ L
Sbjct: 83  QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 126

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 126 NDFDAKYC-------IGNGGHGSVYKAELPSGEFLAVK-----KFHSPLPGDQIADQKEF 173
           +D D  +C       IG G  G+V++AE   G  +AVK      FH+           EF
Sbjct: 30  DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA-------ERVNEF 81
Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           L E+  + ++RH NIV F G  +   +  +V EYL RGSL   L    A E+L
Sbjct: 82  LREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQL 134

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 126 NDFDAKYC-------IGNGGHGSVYKAELPSGEFLAVK-----KFHSPLPGDQIADQKEF 173
           +D D  +C       IG G  G+V++AE   G  +AVK      FH+           EF
Sbjct: 30  DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA-------ERVNEF 81
Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
           L E+  + ++RH NIV F G  +   +  +V EYL RGSL   L    A E+L
Sbjct: 82  LREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQL 134

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL----PSGE--FLAVKKFHSPLPGDQIADQ 170
           I+V+ I+ + D   K  +G G  G V+ AE     P+ +   +AVK    P     +A +
Sbjct: 7   IHVQHIK-RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAAR 61
Query: 171 KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           K+F  E E LT ++H +IVKFYG C       +V+EY++ G L
Sbjct: 62  KDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDL 104

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           V++  A N+FD K+ IG+G  G VYK  L  G  +A+K+  +P   +     +EF  EIE
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTP---ESSQGIEEFETEIE 87
Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
            L+  RH ++V   GFC       L+Y+Y+E G+L  +L
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHL 126

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           V++  A N+FD K+ IG+G  G VYK  L  G  +A+K+  +P   +     +EF  EIE
Sbjct: 32  VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTP---ESSQGIEEFETEIE 87
Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
            L+  RH ++V   GFC       L+Y+Y+E G+L  +L
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHL 126

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 116 FIYVEIIRAKNDFDAKYC------IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F + E+    N+FD +        +G GG G VYK  + +   +AVKK  + +       
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           +++F  EI+ + K +H N+V+  GF S      LVY Y+  GSL   LS
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 116

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 116 FIYVEIIRAKNDFDAKYC------IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F + E+    N+FD +        +G GG G VYK  + +   +AVKK  + +       
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           +++F  EI+ + K +H N+V+  GF S      LVY Y+  GSL   LS
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 116 FIYVEIIRAKNDFDAKYC------IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F + E+    N+FD +        +G GG G VYK  + +   +AVKK  + +       
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           +++F  EI+ + K +H N+V+  GF S      LVY Y+  GSL   LS
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAE----LPSGE--FLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + D   K+ +G G  G V+ AE    LP  +   +AVK     L     + +++F  E E
Sbjct: 17  RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKA----LKEASESARQDFQREAE 72
Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            LT ++H++IV+F+G C+  R   +V+EY+  G L
Sbjct: 73  LLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 107

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAE----LPSGE--FLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + D   K+ +G G  G V+ AE    LP  +   +AVK           + +++F  E E
Sbjct: 11  RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREAE 66
Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            LT ++H++IV+F+G C+  R   +V+EY+  G L
Sbjct: 67  LLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 101

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAE----LPSGE--FLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + D   K+ +G G  G V+ AE    LP  +   +AVK           + +++F  E E
Sbjct: 40  RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREAE 95
Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            LT ++H++IV+F+G C+  R   +V+EY+  G L
Sbjct: 96  LLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 116 FIYVEIIRAKNDFDAKYC------IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F + E+    N+FD +         G GG G VYK  + +   +AVKK  + +       
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 64
Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
           +++F  EI+   K +H N+V+  GF S      LVY Y   GSL   LS
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLS 113

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           + + +  +G G  G V KA+  + + +A+K+  S       +++K F+ E+  L+++ H 
Sbjct: 10  EIEVEEVVGRGAFGVVCKAKWRAKD-VAIKQIESE------SERKAFIVELRQLSRVNHP 62
Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSL 213
           NIVK YG C +     LV EY E GSL
Sbjct: 63  NIVKLYGACLNP--VCLVMEYAEGGSL 87

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           + + +  +G G  G V KA+  + + +A+K+  S       +++K F+ E+  L+++ H 
Sbjct: 9   EIEVEEVVGRGAFGVVCKAKWRAKD-VAIKQIESE------SERKAFIVELRQLSRVNHP 61
Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSL 213
           NIVK YG C +     LV EY E GSL
Sbjct: 62  NIVKLYGACLNP--VCLVMEYAEGGSL 86

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 134 IGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G  G V+   L +   L AVK     LP D  A   +FL E   L +  H NIV+  
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 193 GFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           G C+  +  ++V E ++ G   T L  + A
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLRTEGA 208

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 134 IGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G  G V+   L +   L AVK     LP D  A   +FL E   L +  H NIV+  
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 193 GFCSHARHSFLVYEYLERGSLATNLSNDAA 222
           G C+  +  ++V E ++ G   T L  + A
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLRTEGA 208

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKK--FHSPLPGDQIADQKEFLAEIEALTKI 183
           +DFD    +G G  G+VY A     +F+   K  F S L  + +  Q     EIE  + +
Sbjct: 14  DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSHL 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ Y +    +  +L+ E+  RG L   L      +E
Sbjct: 72  RHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE 113

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKK--FHSPLPGDQIADQKEFLAEIEALTKI 183
           +DFD    +G G  G+VY A     +F+   K  F S L  + +  Q     EIE  + +
Sbjct: 15  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSHL 72
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ Y +    +  +L+ E+  RG L   L      +E
Sbjct: 73  RHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE 114

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G +G VYKA+   GE  A+KK       + I      + EI  L +++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 194 FCSHARHSFLVYEYLER 210
                +   LV+E+L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G +G VYKA+   GE  A+KK       + I      + EI  L +++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 194 FCSHARHSFLVYEYLER 210
                +   LV+E+L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G +G VYKA+   GE  A+KK       + I      + EI  L +++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 194 FCSHARHSFLVYEYLER 210
                +   LV+E+L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 134 IGNGGHGSVYKAEL----PSGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+ AE     P  +   +AVK     L       +K+F  E E LT ++H +
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKT----LKDASDNARKDFHREAELLTNLQHEH 76
Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IVKFYG C       +V+EY++ G L
Sbjct: 77  IVKFYGVCVEGDPLIMVFEYMKHGDL 102

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY  RG +   L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY  RG +   L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            DFD    +G G  G+VY A     +F+   K       ++   + +   E+E  + +RH
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
            NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDE 111

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            DFD    +G G  G+VY A     +F+   K       ++   + +   E+E  + +RH
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
            NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDE 111

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEF---LAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           ND   +  IG G  G V KA +         A+K+       D   D ++F  E+E L K
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 78
Query: 183 I-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +  H NI+   G C H  + +L  EY   G+L
Sbjct: 79  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNL 110

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 110 LNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIA 168
           L F+G   Y +    + D   K+ +G G +G VY+         +AVK        +   
Sbjct: 10  LYFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTM 64
Query: 169 DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           + +EFL E   + +I+H N+V+  G C+     +++ E++  G+L
Sbjct: 65  EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 109

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKK--FHSPLPGDQIADQKEFLAEIEALTKI 183
           +DF+    +G G  G+VY A      F+   K  F S +  + +  Q     EIE    +
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQ--LRREIEIQAHL 80
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
            H NI++ Y +    R  +L+ EY  RG L   L      +E
Sbjct: 81  HHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDE 122

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEF---LAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           ND   +  IG G  G V KA +         A+K+       D   D ++F  E+E L K
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 81
Query: 183 I-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +  H NI+   G C H  + +L  EY   G+L
Sbjct: 82  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNL 113

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEF---LAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           ND   +  IG G  G V KA +         A+K+       D   D ++F  E+E L K
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 71
Query: 183 I-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +  H NI+   G C H  + +L  EY   G+L
Sbjct: 72  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNL 103

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLSNDA 221
           VK+ G C  A  R+  L+ EYL  GSL   L   A
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHA 111

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 71
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 72  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 103

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 72
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 73  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 104

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 79
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 80  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 111

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 104
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 77
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 78  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 109

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 80
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNL 217
           VK+ G C  A  R+  L+ EYL  GSL   L
Sbjct: 81  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL 111

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 78
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 79  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 110

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 106

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 110

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 111

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 74
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ EYL  GSL   L 
Sbjct: 75  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 106

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 107

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 107

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 110

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 110

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 110

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 107

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 107

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   A   +L+ EY   G++   L   +  +E
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDE 104

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 116

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G +G V K     +G  +A+KKF      D    +K  + EI+ L ++RH N+V   
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFLES--DDDKMVKKIAMREIKLLKQLRHENLVNLL 90
Query: 193 GFCSHARHSFLVYEYLERGSL 213
             C   +  +LV+E+++   L
Sbjct: 91  EVCKKKKRWYLVFEFVDHTIL 111

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A   + +F+   K       ++   + +   E+E  + +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           RH NI++ YG+   +   +L+ EY   G++   L   +  +E
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDE 107

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 149 SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYE 206
           +GE +AVK       G+ IAD K+   EIE L  + H NIVK+ G C+        L+ E
Sbjct: 49  TGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIME 105
Query: 207 YLERGSLATNLSND 220
           +L  GSL   L  +
Sbjct: 106 FLPSGSLKEYLPKN 119

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 125

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY          +AVK        +   + +EFL E   + +I
Sbjct: 31  RTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 85
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     ++V EY+  G+L
Sbjct: 86  KHPNLVQLLGVCTLEPPFYIVTEYMPYGNL 115

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 149 SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVYE 206
           +GE +AVK       G+ IAD K+   EIE L  + H NIVK+ G C+        L+ E
Sbjct: 37  TGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIME 93
Query: 207 YLERGSLATNLSND 220
           +L  GSL   L  +
Sbjct: 94  FLPSGSLKEYLPKN 107

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           A  DF+    +G G  G+VY A     +F+   K       ++   + +   E+E  + +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           RH NI++ YG+   A   +L+ EY   G++   L
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 125

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 17  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 72  KHPNLVQLLGVCTREPPFYIIIEFMTYGNL 101

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 128 FDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           FD    +G G +GSVYKA    +G+ +A+K+    +P +  +D +E + EI  + +    
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ----VPVE--SDLQEIIKEISIMQQCDSP 84
Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLA 214
           ++VK+YG        ++V EY   GS++
Sbjct: 85  HVVKYYGSYFKNTDLWIVMEYCGAGSVS 112

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 10  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 64
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 65  KHPNLVQLLGVCTREPPFYIIIEFMTYGNL 94

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 13  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 67
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 68  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 97

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 17  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 72  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 17  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 72  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 13  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 67
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 68  KHPNLVQLLGVCTREPPFYIIIEFMTYGNL 97

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 10  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 64
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 65  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 94

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 17  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 72  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 16  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 70
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 71  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 100

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 14  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 69  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 17  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 71
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 72  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 12  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 66
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 67  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 14  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 69  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK             ++F  EIE L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 189 VKFYGFCSHA--RHSFLVYEYLERGSLATNLS 218
           VK+ G C  A  R+  L+ E+L  GSL   L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ 108

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 273
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 274 KHPNLVQLLGVCTREPPFYIITEFMTYGNL 303

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 14  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 68
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 69  KHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           + EF  E + + K+ H  +VKFYG CS     ++V EY+  G L   L +
Sbjct: 47  EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRS 96

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEF-LAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 258 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 312
Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +H N+V+  G C+     +++ E++  G+L
Sbjct: 313 KHPNLVQLLGVCTREPPFYIITEFMTYGNL 342

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 127 DFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFL-AEIEALTKIR 184
           D++  Y IG G +G   K    S G+ L  K+      G     +K+ L +E+  L +++
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDY---GSMTEAEKQMLVSEVNLLRELK 63
Query: 185 HRNIVKFYGFCSHARHS--FLVYEYLERGSLATNLS 218
           H NIV++Y       ++  ++V EY E G LA+ ++
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 127 DFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFL-AEIEALTKIR 184
           D++  Y IG G +G   K    S G+ L  K+      G     +K+ L +E+  L +++
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDY---GSMTEAEKQMLVSEVNLLRELK 63
Query: 185 HRNIVKFYGFCSHARHS--FLVYEYLERGSLATNLS 218
           H NIV++Y       ++  ++V EY E G LA+ ++
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 127 DFDAKYCIGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFL-AEIEALTKIR 184
           D++  Y IG G +G   K    S G+ L  K+      G     +K+ L +E+  L +++
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDY---GSMTEAEKQMLVSEVNLLRELK 63
Query: 185 HRNIVKFYGFCSHARHS--FLVYEYLERGSLATNLS 218
           H NIV++Y       ++  ++V EY E G LA+ ++
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-30
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-29
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-23
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-21
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-20
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-19
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-18
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-18
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	7e-17
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-17
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-16
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-16
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	7e-16
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	9e-16
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-15
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	9e-15
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-14
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	6e-13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-13
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-12
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-12
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-12
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-12
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-12
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	6e-12
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-12
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	7e-12
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	8e-12
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-11
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-11
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-11
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-11
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	7e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	8e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	8e-11
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	9e-11
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	9e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-10
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-10
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	4e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	4e-10
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	4e-10
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-10
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-10
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-10
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-10
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	7e-10
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	8e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	8e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	9e-10
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	9e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-09
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-09
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-09
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	6e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-09
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	6e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-09
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	8e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-09
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	6e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	7e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	7e-08
3aln_A	327	Dual specificity mitogen-activated protein kinase;	8e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-07
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-07
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-07
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	6e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	6e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	8e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-06
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-06
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	3e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-06
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-06
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	6e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	6e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	7e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	9e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	6e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	6e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	8e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	8e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	9e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	4e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	5e-04
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	6e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  112 bits (283), Expect = 5e-30
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 115 KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFL 174
           +F   E+  A ++F  K  +G GG G VYK  L  G  +AVK+            + +F 
Sbjct: 19  RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKE---ERTQGGELQFQ 75

Query: 175 AEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
            E+E ++   HRN+++  GFC       LVY Y+  GS+A+ L
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 118

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  111 bits (280), Expect = 1e-29
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 93  SGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEF 152
           S               +     +   V++  A N+FD K+ IG+G  G VYK  L  G  
Sbjct: 6   SKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAK 65

Query: 153 LAVKKFHSPLPGDQIADQ--KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLER 210
           +A+K+          + Q  +EF  EIE L+  RH ++V   GFC       L+Y+Y+E 
Sbjct: 66  VALKR------RTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMEN 119

Query: 211 GSLATNLS 218
           G+L  +L 
Sbjct: 120 GNLKRHLY 127

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 94.9 bits (237), Expect = 1e-23
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 116 FIYVEIIRAKNDFDAKYC------IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIAD 169
           F + E+    N+FD +        +G GG G VYK  +     +AVKK  + +       
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDITTEEL 73

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           +++F  EI+ + K +H N+V+  GF S      LVY Y+  GSL   L
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEA 179
            +               G  G V+KA+L   E++AVK F       Q     +   E+ +
Sbjct: 18  NLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPI-----QDKQSWQNEYEVYS 71

Query: 180 LTKIRHRNIVKFYGFCSHARHS----FLVYEYLERGSL 213
           L  ++H NI++F G            +L+  + E+GSL
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSL 109

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG GG G VY+A    G+ +AVK        D     +    E +    ++H NI+   G
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 194 FCSHARHSFLVYEYLERGSL 213
            C    +  LV E+   G L
Sbjct: 74  VCLKEPNLCLVMEFARGGPL 93

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 85.3 bits (211), Expect = 7e-20
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE--ALTKI 183
           ++      IG G +G+VYK  L     +AVK F          +++ F+ E     +  +
Sbjct: 13  DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLM 64

Query: 184 RHRNIVKFYGFCSHARHS-----FLVYEYLERGSLATNLSNDA 221
            H NI +F                LV EY   GSL   LS   
Sbjct: 65  EHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT 107

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G  G+V++AE   G  +AVK         +     EFL E+  + ++RH NIV F G
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERV--NEFLREVAIMKRLRHPNIVLFMG 101

Query: 194 FCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
             +   +  +V EYL RGSL   L    A E+L
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQL 134

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            + + +  +G G  G V KA+    + +A+K+  S       +++K F+ E+  L+++ H
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNH 60

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEEL 226
            NIVK YG C +     LV EY E GSL   L         
Sbjct: 61  PNIVKLYGACLNPV--CLVMEYAEGGSLYNVLHGAEPLPYY 99

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 134 IGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQ---KEFLAEIEALTKIRHRNIV 189
           IG GG G V+K  L      +A+K         +       +EF  E+  ++ + H NIV
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86

Query: 190 KFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           K YG   +     +V E++  G L   L +
Sbjct: 87  KLYGLMHNPPR--MVMEFVPCGDLYHRLLD 114

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G  G VY      GE +A++        +     K F  E+ A  + RH N+V F G
Sbjct: 41  IGKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQL--KAFKREVMAYRQTRHENVVLFMG 96

Query: 194 FCSHARHSFLVYEYLERGSL 213
            C    H  ++    +  +L
Sbjct: 97  ACMSPPHLAIITSLCKGRTL 116

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 134 IGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G  G   K     +GE + +K+            Q+ FL E++ +  + H N++KF 
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDE----ETQRTFLKEVKVMRCLEHPNVLKFI 73

Query: 193 GFCSHARHSFLVYEYLERGSL 213
           G     +    + EY++ G+L
Sbjct: 74  GVLYKDKRLNFITEYIKGGTL 94

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE--ALTKIRHRNIVK 190
           C+G G +G V++     GE +AVK F S        D+K +  E E      +RH NI+ 
Sbjct: 15  CVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 66

Query: 191 FYGFCSHARHS----FLVYEYLERGSL 213
           F      +RHS    +L+  Y E GSL
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSL 93

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +     G ++K     G  + VK         + +  ++F  E   L    H N++   G
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKS--RDFNEECPRLRIFSHPNVLPVLG 74

Query: 194 FCSH--ARHSFLVYEYLERGSL 213
            C    A H  L+  ++  GSL
Sbjct: 75  ACQSPPAPHPTLITHWMPYGSL 96

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 74.0 bits (182), Expect = 7e-16
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            IG G +G V+  +   GE +AVK F +    ++ +  +E   EI     +RH NI+ F 
Sbjct: 44  QIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRE--TEIYQTVLMRHENILGFI 97

Query: 193 GFCSHARHS----FLVYEYLERGSL 213
                   S    +L+ +Y E GSL
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSL 122

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 74.0 bits (182), Expect = 9e-16
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE--ALTKIRHRNIVK 190
            IG G  G V++ +   GE +AVK F S        +++ +  E E      +RH NI+ 
Sbjct: 49  SIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILG 100

Query: 191 FYGFCSHARHS----FLVYEYLERGSL 213
           F    +    +    +LV +Y E GSL
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSL 127

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG+G  G+VYK +   G+ +AVK  +   P  Q    + F  E+  L K RH NI+ F G
Sbjct: 32  IGSGSFGTVYKGKW-HGD-VAVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 87

Query: 194 FCSHARHSFLVYEYLERGSL 213
           + +  + + +V ++ E  SL
Sbjct: 88  YSTAPQLA-IVTQWCEGSSL 106

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 97  QRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAV 155
           +  P+       +L  K K +  E     +    +  +G G  G V++  +  +G   AV
Sbjct: 29  RLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAV 88

Query: 156 KKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLAT 215
           K         ++  +   + E+ A   +    IV  YG         +  E LE GSL  
Sbjct: 89  K---------KVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQ 139

Query: 216 NLSNDAAAEE 225
            +       E
Sbjct: 140 LIKQMGCLPE 149

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
            +G G +G VY   +L +   +A+K+    +P       +    EI     ++H+NIV++
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIALHKHLKHKNIVQY 84

Query: 192 YGFCSHARHSFLVYEYLERGSLATNLSN 219
            G  S      +  E +  GSL+  L +
Sbjct: 85  LGSFSENGFIKIFMEQVPGGSLSALLRS 112

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           R   +F     IG+G  GSV+K  +   G   A+K+  S  P     D++  L E+ A  
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR--SKKPLAGSVDEQNALREVYAHA 65

Query: 182 KI-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS 218
            + +H ++V+++   +   H  +  EY   GSLA  +S
Sbjct: 66  VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAIS 103

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 66.9 bits (163), Expect = 4e-13
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 125 KNDFDAKYCIGNGGH--GSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
              ++    IG G     +V  A   P+GE++ V++    L             E+    
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRI--NLEACSNEMVTFLQGELHVSK 81

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
              H NIV +          ++V  ++  GS  
Sbjct: 82  LFNHPNIVPYRATFIADNELWVVTSFMAYGSAK 114

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G V           +GE +AVK      P        +   EIE L  + H NI
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLK---PESGGNHIADLKKEIEILRNLYHENI 85

Query: 189 VKFYGFCSHARHS--FLVYEYLERGSL 213
           VK+ G C+    +   L+ E+L  GSL
Sbjct: 86  VKYKGICTEDGGNGIKLIMEFLPSGSL 112

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +G  +AVK+    L       Q++F  EI+ L  +    I
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQ----LQHSGPDQQRDFQREIQILKALHSDFI 86

Query: 189 VKFYGFCSHARHS--FLVYEYLERGSL 213
           VK+ G           LV EYL  G L
Sbjct: 87  VKYRGVSYGPGRQSLRLVMEYLPSGCL 113

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+ AE     P+ + +  AVK     L    +A +K+F  E E LT ++H +
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKA----LKDPTLAARKDFQREAELLTNLQHEH 78

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IVKFYG C       +V+EY++ G L
Sbjct: 79  IVKFYGVCGDGDPLIMVFEYMKHGDL 104

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK    L        ++F  EIE L  ++H NI
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 104

Query: 189 VKFYGFCSHARHS--FLVYEYLERGSL 213
           VK+ G C  A      L+ EYL  GSL
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSL 131

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 134 IGNGGHGSVYKAELP-----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  GSV           +GE +AVKK    L        ++F  EIE L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 73

Query: 189 VKFYGFCSHARHS--FLVYEYLERGSL 213
           VK+ G C  A      L+ EYL  GSL
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSL 100

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 134 IGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G  G V+   L +   L AVK     LP D      +FL E   L +  H NIV+  
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLK---AKFLQEARILKQYSHPNIVRLI 178

Query: 193 GFCSHARHSFLVYEYLERGSL 213
           G C+  +  ++V E ++ G  
Sbjct: 179 GVCTQKQPIYIVMELVQGGDF 199

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 134 IGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G G  G V           +GE +AVK             +  +  EI+ L  + H +I
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALK---ADAGPQHRSGWKQEIDILRTLYHEHI 95

Query: 189 VKFYGFCSHARHS--FLVYEYLERGSL 213
           +K+ G C  A  +   LV EY+  GSL
Sbjct: 96  IKYKGCCEDAGAASLQLVMEYVPLGSL 122

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG+G  G V+     + + +A+K       G     +++F+ E E + K+ H  +V+ YG
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR---EGAM--SEEDFIEEAEVMMKLSHPKLVQLYG 70

Query: 194 FCSHARHSFLVYEYLERGSL 213
            C       LV E++E G L
Sbjct: 71  VCLEQAPICLVTEFMEHGCL 90

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V KA          +   AVK           ++ ++ L+E   L ++ H +
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK---ENASPSELRDLLSEFNVLKQVNHPH 87

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           ++K YG CS      L+ EY + GSL   L
Sbjct: 88  VIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G+G  G VY+ ++         L  AVK            D+ +FL E   ++K  H+N
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP---EVCSEQDELDFLMEALIISKFNHQN 94

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IV+  G    +   F++ E +  G L
Sbjct: 95  IVRCIGVSLQSLPRFILMELMAGGDL 120

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 134 IGNGGHGSVYKAELPSGEFL---AVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIV 189
           IG G  G V KA +         A+K+           D ++F  E+E L K+  H NI+
Sbjct: 33  IGEGNFGQVLKARIKKDGLRMDAAIKRMK---EYASKDDHRDFAGELEVLCKLGHHPNII 89

Query: 190 KFYGFCSHARHSFLVYEYLERGSLATNL 217
              G C H  + +L  EY   G+L   L
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFL 117

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 127 DFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-FLAEIEALTKIR 184
            F     IG G  G V+K  +  + + +A+K     +  ++  D+ E    EI  L++  
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKI----IDLEEAEDEIEDIQQEITVLSQCD 78

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLAT 215
              + K+YG        +++ EYL  GS   
Sbjct: 79  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALD 109

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V+ AE     P  + +  AVK     L     + +++F  E E LT ++H++
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKA----LKEASESARQDFQREAELLTMLQHQH 104

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IV+F+G C+  R   +V+EY+  G L
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDL 130

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 125 KNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           ++D++ +  IG+G    V  A   P  E +A+K+    L   Q     E L EI+A+++ 
Sbjct: 14  RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRI--NLEKCQ-TSMDELLKEIQAMSQC 70

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
            H NIV +Y         +LV + L  GS+ 
Sbjct: 71  HHPNIVSYYTSFVVKDELWLVMKLLSGGSVL 101

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           IG G  G V++A      P   F   AVK             Q +F  E   + +  + N
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK---EEASADMQADFQREAALMAEFDNPN 111

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           IVK  G C+  +   L++EY+  G L   L
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 141

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 111 NFKGKFIYVEIIRAKN---DFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQ 166
           + +    Y  + R  +    ++    +G+G  G VYKA    +G   A K     +    
Sbjct: 1   SMRKSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKV----IETKS 56

Query: 167 IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
             + ++++ EIE L    H  IVK  G   H    +++ E+   G++ 
Sbjct: 57  EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVD 104

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G+G  G VY+ ++         L  AVK            D+ +FL E   ++K  H+N
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP---EVCSEQDELDFLMEALIISKFNHQN 135

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           IV+  G    +   F++ E +  G L + L
Sbjct: 136 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 165

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G G  G V   +      +A+K             + EF+ E + +  + H  +V+ YG
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYG 86

Query: 194 FCSHARHSFLVYEYLERGSL 213
            C+  R  F++ EY+  G L
Sbjct: 87  VCTKQRPIFIITEYMANGCL 106

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 128 FDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
           FD    +G G +GSVYKA    +G+ +A+K+          +D +E + EI  + +    
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV------PVESDLQEIIKEISIMQQCDSP 84

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLA 214
           ++VK+YG        ++V EY   GS++
Sbjct: 85  HVVKYYGSYFKNTDLWIVMEYCGAGSVS 112

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G VY+               A+K  +       + ++ EFL E   + +    +
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEFLNEASVMKEFNCHH 89

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           +V+  G  S  + + ++ E + RG L
Sbjct: 90  VVRLLGVVSQGQPTLVIMELMTRGDL 115

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIE 178
           E+ R   D   K+ +G G +G VY+          AVK            + +EFL E  
Sbjct: 216 EMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK---EDT--MEVEEFLKEAA 268

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            + +I+H N+V+  G C+     +++ E++  G+L
Sbjct: 269 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 303

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 133 CIGNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
            IG G   +VYK  +  +   +A  +     L   +    + F  E E L  ++H NIV+
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSER---QRFKEEAEMLKGLQHPNIVR 89

Query: 191 FYG----FCSHARHSFLVYEYLERGSLAT 215
           FY          +   LV E +  G+L T
Sbjct: 90  FYDSWESTVKGKKCIVLVTELMTSGTLKT 118

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           +G+G  G V   +      +AVK       G     + EF  E + + K+ H  +VKFYG
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK---EGSM--SEDEFFQEAQTMMKLSHPKLVKFYG 70

Query: 194 FCSHARHSFLVYEYLERGSL 213
            CS     ++V EY+  G L
Sbjct: 71  VCSKEYPIYIVTEYISNGCL 90

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 128 FDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR 186
            D+   IG G  G V  A E  SG  +AVK     L   Q   ++    E+  +   +H 
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMM--DLRKQQ--RRELLFNEVVIMRDYQHF 102

Query: 187 NIVKFYGFCSHARHSFL--VYEYLERGSLA 214
           N+V+ Y   S+     L  + E+L+ G+L 
Sbjct: 103 NVVEMYK--SYLVGEELWVLMEFLQGGALT 130

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 110 LNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIA 168
           L F+G  + +        +     +G GG   V   E L  G F A+K+        +  
Sbjct: 17  LYFQGHMVII----DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH----EQQ 68

Query: 169 DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS----FLVYEYLERGSLATNL 217
           D++E   E +      H NI++   +C   R +    +L+  + +RG+L   +
Sbjct: 69  DREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEI 121

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 134 IGNGGHGSVYKAEL------PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-R 184
           +G G  G V  AE          E +  AVK            D  + ++E+E +  I +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMKMIGK 99

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           H+NI+   G C+     +++ EY  +G+L   L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 125 KNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           K  +     IG G  G+VY A ++ +G+ +A+++    L       ++  + EI  + + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQM--NLQQQP--KKELIINEILVMREN 74

Query: 184 RHRNIVKFYGFCSHARHSFL--VYEYLERGSLA 214
           ++ NIV +    S+     L  V EYL  GSL 
Sbjct: 75  KNPNIVNYLD--SYLVGDELWVVMEYLAGGSLT 105

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLA 175
           EI    +    +  IG+G  G V    L  P    +  A+K       G     +++FL+
Sbjct: 45  EIEA--SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALK---AGYTERQRRDFLS 99

Query: 176 EIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           E   + +  H NI++  G  +  R + +V EY+E GSL
Sbjct: 100 EASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 134 IGNGGHGSVYKAELPSGEFL--------AVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
           +G G    ++K                  +K     L        + F      ++K+ H
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKV----LDKAHRNYSESFFEAASMMSKLSH 71

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +++V  YG C     + LV E+++ GSL
Sbjct: 72  KHLVLNYGVCVCGDENILVQEFVKFGSL 99

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
             +     IG G  G     +    G    +K+    +      +++E   E+  L  ++
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEI--NISRMSSKEREESRREVAVLANMK 81

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           H NIV++          ++V +Y E G L   +
Sbjct: 82  HPNIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 134 IGNGGHGSVYKAELPSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G +G VY+          AVK        +   + +EFL E   + +I+H N+V+  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75

Query: 193 GFCSHARHSFLVYEYLERGSL 213
           G C+     +++ E++  G+L
Sbjct: 76  GVCTREPPFYIITEFMTYGNL 96

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGE----FLAVKKFHSPLPGDQIADQKEFL 174
           V I   +    +   IG G  G VY  E           A+K         ++   + FL
Sbjct: 14  VLIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLS---RITEMQQVEAFL 70

Query: 175 AEIEALTKIRHRNIVKFYGFCSHAR-HSFLVYEYLERGSL 213
            E   +  + H N++   G          ++  Y+  G L
Sbjct: 71  REGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDL 110

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 125 KNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
              F+    +GNG +G VYK   + +G+  A+K     + GD   +++E   EI  L K 
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVM--DVTGD---EEEEIKQEINMLKKY 77

Query: 184 -RHRNIVKFYG------FCSHARHSFLVYEYLERGSLA 214
             HRNI  +YG              +LV E+   GS+ 
Sbjct: 78  SHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVT 115

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHR 186
           +G G  G V +A       S   +  AVK      P   + +++  ++E++ L+ +  H 
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 87

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSL 213
           NIV   G C+    + ++ EY   G L
Sbjct: 88  NIVNLLGACTIGGPTLVITEYCCYGDL 114

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 134 IGNGGHGSVYKAEL------PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-R 184
           +G G  G V  AE               AVK            D  + ++E+E +  I +
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK---SDATEKDLSDLISEMEMMKMIGK 133

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           H+NI+   G C+     +++ EY  +G+L
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNL 162

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 134 IGNGGHGSVYKAELP------SGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-R 184
           +G G  G V  AE          E +  AVK            D  + ++E+E +  I +
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMKMIGK 145

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           H+NI+   G C+     +++ EY  +G+L   L
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 178

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKE---FLAEIEALT 181
            +F  +  IG G    VY+A  L  G  +A+KK    +    + D K     + EI+ L 
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKK----VQIFDLMDAKARADCIKEIDLLK 87

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           ++ H N++K+Y          +V E  + G L+  + +
Sbjct: 88  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKH 125

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL---AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           IG G  G VYK  L   SG+     A+K       G     + +FL E   + +  H NI
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK---AGYTEKQRVDFLGEAGIMGQFSHHNI 108

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           ++  G  S  +   ++ EY+E G+L
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGAL 133

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHR 186
           +G+G  G V  A       +G  +  AVK           ++++  ++E++ +T++  H 
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREALMSELKMMTQLGSHE 109

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           NIV   G C+ +   +L++EY   G L   L
Sbjct: 110 NIVNLLGACTLSGPIYLIFEYCCYGDLLNYL 140

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G    G VYK  L    P  +    A+K         +   ++EF  E     +++H N
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLK---DKAEGPLREEFRHEAMLRARLQHPN 73

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           +V   G  +  +   +++ Y   G L
Sbjct: 74  VVCLLGVVTKDQPLSMIFSYCSHGDL 99

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G  G V   +   G  +AVK           A  + FLAE   +T++RH N+V+  G
Sbjct: 29  IGKGEFGDVMLGDY-RGNKVAVKCIK---ND---ATAQAFLAEASVMTQLRHSNLVQLLG 81

Query: 194 FCSHARHS-FLVYEYLERGSL 213
                +   ++V EY+ +GSL
Sbjct: 82  VIVEEKGGLYIVTEYMAKGSL 102

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 128 FDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQ-KEFLAEIEALTKIRH 185
           F     IG+G  G+VY A ++ + E +A+KK      G Q  ++ ++ + E+  L K+RH
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKM--SYSGKQSNEKWQDIIKEVRFLQKLRH 113

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSLAT 215
            N +++ G       ++LV EY   GS + 
Sbjct: 114 PNTIQYRGCYLREHTAWLVMEYCL-GSASD 142

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 16/105 (15%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           R   DF+   C+G GG G V++A+        A+K+    LP  +   +++ + E++AL 
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKR--IRLPNRE-LAREKVMREVKALA 58

Query: 182 KIRHRNIVKFYGFC------------SHARHSFLVYEYLERGSLA 214
           K+ H  IV+++               S   + ++  +   + +L 
Sbjct: 59  KLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLK 103

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            IG G  G V   +   G  +AVK     +  D  A  + FLAE   +T++RH N+V+  
Sbjct: 200 TIGKGEFGDVMLGDY-RGNKVAVKC----IKND--ATAQAFLAEASVMTQLRHSNLVQLL 252

Query: 193 GFCSHARHSF-LVYEYLERGSL 213
           G     +    +V EY+ +GSL
Sbjct: 253 GVIVEEKGGLYIVTEYMAKGSL 274

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHR 186
           +G G  G V +A           L  AVK            +++  ++E++ ++ + +H 
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK---STAHADEKEALMSELKIMSHLGQHE 110

Query: 187 NIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           NIV   G C+H     ++ EY   G L   L
Sbjct: 111 NIVNLLGACTHGGPVLVITEYCCYGDLLNFL 141

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           R  +DF+    +G G  G V KA       + A+KK    +   +       L+E+  L 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKK----IRHTE-EKLSTILSEVMLLA 57

Query: 182 KIRHRNIVKFYGFCSHARHS-------------FLVYEYLERGSLA 214
            + H+ +V++Y      R+              F+  EY E G+L 
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLY 103

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G G  G V    L  PS + +  A+K       G     +++FL E   + +  H NI+
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLK---VGYTEKQRRDFLGEASIMGQFDHPNII 109

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           +  G  + ++   +V EY+E GSL
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSL 133

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKALTPHKQSFGT 60
           +  L  ID+S N+L G IP    F   P      N GLCG    L  C        +   
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPSNADGYAHHQ 760

Query: 61  K 61
           +
Sbjct: 761 R 761

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            +G G  G V+ A       +AVK      PG      + FLAE   +  ++H  +VK +
Sbjct: 195 KLGAGQFGEVWMATYNKHTKVAVKTMK---PGSM--SVEAFLAEANVMKTLQHDKLVKLH 249

Query: 193 GFCSHARHSFLVYEYLERGSL 213
              +     +++ E++ +GSL
Sbjct: 250 AVVTK-EPIYIITEFMAKGSL 269

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            +G G  G V+         +AVK       G        FLAE   + +++H+ +V+ Y
Sbjct: 20  RLGAGQFGEVWMGYYNGHTKVAVKSLK---QGSM--SPDAFLAEANLMKQLQHQRLVRLY 74

Query: 193 GFCSHARHSFLVYEYLERGSL 213
              +     +++ EY+E GSL
Sbjct: 75  AVVTQ-EPIYIITEYMENGSL 94

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 131 KYCIGNGGHGSVYKAEL--PSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
              +G G  GSV +        +   A+K       G + AD +E + E + + ++ +  
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPY 71

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           IV+  G C       LV E    G L
Sbjct: 72  IVRLIGVCQAEAL-MLVMEMAGGGPL 96

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            +G G  G V+         +A+K      PG      + FL E + + K+RH  +V+ Y
Sbjct: 274 KLGQGCFGEVWMGTWNGTTRVAIKTLK---PGTM--SPEAFLQEAQVMKKLRHEKLVQLY 328

Query: 193 GFCSHARHSFLVYEYLERGSL 213
              S     ++V EY+ +GSL
Sbjct: 329 AVVSE-EPIYIVTEYMSKGSL 348

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G G  GSV +  L    G  L  AVK         +  + +EFL+E   +    H N++
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQR--EIEEFLSEAACMKDFSHPNVI 99

Query: 190 KFYGFCS-----HARHSFLVYEYLERGSLATNL 217
           +  G C            ++  +++ G L T L
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH--RNIVK 190
            IG+GG   V++      +  A+K     L          +  EI  L K++     I++
Sbjct: 63  QIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNL 217
            Y +    ++ ++V E      L + L
Sbjct: 121 LYDYEITDQYIYMVMEC-GNIDLNSWL 146

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 95  EGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFL 153
           E +   Q  + L + L  K K   ++     +DF+    +G G  G V+K    PSG  +
Sbjct: 6   ELELDEQQRKRLEAFLTQKQKVGELKD----DDFEKISELGAGNGGVVFKVSHKPSGLVM 61

Query: 154 AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           A K  H  +   + A + + + E++ L +     IV FYG         +  E+++ GSL
Sbjct: 62  ARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 118

Query: 214 A 214
            
Sbjct: 119 D 119

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G G  GSV +A+L    G F+  AVK   + +      D +EFL E   + +  H ++ 
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASS--DIEEFLREAACMKEFDHPHVA 88

Query: 190 KFYGFCS------HARHSFLVYEYLERGSL 213
           K  G               ++  +++ G L
Sbjct: 89  KLVGVSLRSRAKGRLPIPMVILPFMKHGDL 118

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G VY   L    G+ +  AVK  +       I +  +FL E   +    H N++
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLN---RITDIGEVSQFLTEGIIMKDFSHPNVL 89

Query: 190 KFYGFCSHARHS-FLVYEYLERGSL 213
              G C  +  S  +V  Y++ G L
Sbjct: 90  SLLGICLRSEGSPLVVLPYMKHGDL 114

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G VY   L    G+ +  AVK  +       I +  +FL E   +    H N++
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLN---RITDIGEVSQFLTEGIIMKDFSHPNVL 153

Query: 190 KFYGFCSHARHS-FLVYEYLERGSL 213
              G C  +  S  +V  Y++ G L
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDL 178

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G   +V++     +G+  A+K F++             + E E L K+ H+NIVK +
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---PVDVQMREFEVLKKLNHKNIVKLF 73

Query: 193 GF--CSHARHSFLVYEYLERGSL 213
                +  RH  L+ E+   GSL
Sbjct: 74  AIEEETTTRHKVLIMEFCPCGSL 96

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 134 IGNGGHGSVYKAEL-PSGEFL----AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G+VYK    P GE +    A+K+             KE L E   +  + + ++
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
            +  G C       L+ + +  G L
Sbjct: 80  CRLLGICL-TSTVQLITQLMPFGCL 103

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH--RNIVK 190
            IG+GG   V++      +  A+K     L          +  EI  L K++     I++
Sbjct: 35  QIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 92

Query: 191 FYGFCSHARHSFLVYEYLERGSLAT 215
            Y +    ++ ++V E      L +
Sbjct: 93  LYDYEITDQYIYMVMEC-GNIDLNS 116

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            +G G  G V+         +A+K      PG      + FL E + + K+RH  +V+ Y
Sbjct: 191 KLGQGCFGEVWMGTWNGTTRVAIKTLK---PGTM--SPEAFLQEAQVMKKLRHEKLVQLY 245

Query: 193 GFCSHARHSFLVYEYLERGSL 213
              S     ++V EY+ +GSL
Sbjct: 246 AVVSE-EPIYIVTEYMSKGSL 265

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 123 RAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAE 176
            +  +   KY +    G G +G V  A E  +    A+K  + + +      D +    E
Sbjct: 19  GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTE 78

Query: 177 IEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           +  + K+ H NI + Y      ++  LV E    G L
Sbjct: 79  VRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA-EIEALTKIRHRNIVKF 191
           +G G   +V++     +G+  A+K F++           +    E E L K+ H+NIVK 
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNN----ISFLRPVDVQMREFEVLKKLNHKNIVKL 72

Query: 192 YGF--CSHARHSFLVYEYLERGSL 213
           +     +  RH  L+ E+   GSL
Sbjct: 73  FAIEEETTTRHKVLIMEFCPCGSL 96

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 133 CIGNGGHGSVYKAE---LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
             G       ++A    L     +A+               +E L+    L++I    + 
Sbjct: 38  FHGGVPPLQFWQALDTAL--DRQVALTFVDPQGVLPD-DVLQETLSRTLRLSRIDKPGVA 94

Query: 190 KFYGFCSHARHSFLVYEYLERGSLAT 215
           +            +V E++  GSL  
Sbjct: 95  RVLDVVHTRAGGLVVAEWIRGGSLQE 120

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 88  KRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKY------CIGNGGHGS 141
              L      +S + S   + I      F +  +   +   ++ Y       +G G  G 
Sbjct: 45  NADLTERMPVKSKRTSALAVDIPAPPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQ 104

Query: 142 VYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH 200
           V+K  E  +G  LA K     +    + D++E   EI  + ++ H N+++ Y        
Sbjct: 105 VHKCEETATGLKLAAKI----IKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKND 160

Query: 201 SFLVYEYLERGSL 213
             LV EY++ G L
Sbjct: 161 IVLVMEYVDGGEL 173

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
             +  F     +G+G +G V+K      G   AVK+  S  P     D+   LAE+ +  
Sbjct: 54  FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKR--SMSPFRGPKDRARKLAEVGSHE 111

Query: 182 KI-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           K+ +H   V+           +L  E     SL  +   
Sbjct: 112 KVGQHPCCVRLEQAWEEGGILYLQTELCG-PSLQQHCEA 149

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 134 IGNGGHGSVYKAEL----PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHR 186
           +G G  G V +A+      +      AVK       G   ++ +  ++E++ L  I  H 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLK---EGATHSEHRALMSELKILIHIGHHL 91

Query: 187 NIVKFYGFCSHA-RHSFLVYEYLERGSLATNL 217
           N+V   G C+       ++ E+ + G+L+T L
Sbjct: 92  NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 121 IIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFL 174
           +  +   F  +Y      G G  G V    +  +G+  AVK      +      D++  L
Sbjct: 17  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKT--DKESLL 74

Query: 175 AEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            E++ L ++ H NI+K Y F     + +LV E    G L
Sbjct: 75  REVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAE------LPSGEFLAVKKFHSPLPGDQIADQ 170
              E           + +G G    VY+A         + +   +K      P +     
Sbjct: 56  PKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEF---- 111

Query: 171 KEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
                 +E L        +KFY        S LV E    G+L
Sbjct: 112 YIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTL 154

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 25/114 (21%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           R   DF     IG+GG G V+KA+    G+   +K+           + ++   E++AL 
Sbjct: 8   RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY--------NNEKAEREVKALA 59

Query: 182 KIRHRNIVKFYGF----------------CSHARHSFLVYEYLERGSLATNLSN 219
           K+ H NIV + G                  S  +  F+  E+ ++G+L   +  
Sbjct: 60  KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEK 113

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL-AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G G  GSV +        +   A+K       G + AD +E + E + + ++ +  IV+
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPYIVR 400

Query: 191 FYGFCSHARHSFLVYEYLERGSL 213
             G C       LV E    G L
Sbjct: 401 LIGVCQAEAL-MLVMEMAGGGPL 422

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 111 NFKGKFIYVEIIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGD 165
           +   ++    +    +     Y I    G G  G V++  E  +G   A K     +   
Sbjct: 138 DIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTP 193

Query: 166 QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             +D++    EI+ ++ +RH  +V  +          ++YE++  G L
Sbjct: 194 HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL 241

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 121 IIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA 175
           I   K      Y      G+G +G V    +  +    A+K           +   + L 
Sbjct: 28  ITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKII--RKTSVSTSSNSKLLE 85

Query: 176 EIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           E+  L  + H NI+K Y F    R+ +LV E  + G L
Sbjct: 86  EVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGEL 123

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 121 IIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVK---------KFHSPLPGDQ 166
           + + +      Y      G+G +G V    E       A+K           +S    + 
Sbjct: 27  VRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNI 86

Query: 167 IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
               +E   EI  L  + H NI+K +      ++ +LV E+ E G L
Sbjct: 87  EKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL 133

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 111 NFKGKFIYVEIIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGD 165
           +   K++   +   +      Y I    G+G  G V++  E  +G     K     +   
Sbjct: 32  DIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKF----INTP 87

Query: 166 QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
              D+     EI  + ++ H  ++  +          L+ E+L  G L
Sbjct: 88  YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL 135

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G G  G VY+       GE +  AVK          + ++++F++E   +  + H +IV
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCK---KDCTLDNKEKFMSEAVIMKNLDHPHIV 76

Query: 190 KFYGFCSHARHS-FLVYEYLERGSL 213
           K  G         +++ E    G L
Sbjct: 77  KLIGIIE--EEPTWIIMELYPYGEL 99

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH--RNIVK 190
            IG+GG   V++      +  A+K     L          +  EI  L K++     I++
Sbjct: 16  QIGSGGSSKVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 73

Query: 191 FYGFCSHARHSFLVYEYLERGSLAT 215
            Y +    ++ ++V E      L +
Sbjct: 74  LYDYEITDQYIYMVMEC-GNIDLNS 97

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTC 48
           ++ L  +++S+N+L G IP     +   + +   NK LCGS   L  C
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS--PLPAC 312

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVK-KFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           +G GG    ++  +  + E  A K    S L      ++     EI     + H+++V F
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEISIHRSLAHQHVVGF 106

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
           +GF       F+V E   R SL
Sbjct: 107 HGFFEDNDFVFVVLELCRRRSL 128

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVK-KFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           +G GG    ++  +  + E  A K    S L      ++     EI     + H+++V F
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEISIHRSLAHQHVVGF 80

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
           +GF       F+V E   R SL
Sbjct: 81  HGFFEDNDFVFVVLELCRRRSL 102

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 127 DFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEAL 180
            F+  Y     IG G    V +     +G+  AVK    +          ++   E    
Sbjct: 21  LFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 80

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             ++H +IV+     S     ++V+E+++   L
Sbjct: 81  HMLKHPHIVELLETYSSDGMLYMVFEFMDGADL 113

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           +G+G  G V + E   PSG+ +  AVK     +   Q     +F+ E+ A+  + HRN++
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-SQPEAMDDFIREVNAMHSLDHRNLI 84

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           + YG         +V E    GSL
Sbjct: 85  RLYGVVL-TPPMKMVTELAPLGSL 107

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 94  GEGQRSPQNSQELLSILNFKGK-FIYVEII-----RAKNDFDAKYCI----GNGGHGSVY 143
           G+G+R P N+   +++   + K F++ ++              +Y +    G+G  G V 
Sbjct: 93  GKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVK 152

Query: 144 KA-ELPSGEFLAVKKFH----SPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA 198
            A E  + + +A++       +     +         EIE L K+ H  I+K   F   A
Sbjct: 153 LAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211

Query: 199 RHSFLVYEYLERGSL 213
              ++V E +E G L
Sbjct: 212 EDYYIVLELMEGGEL 226

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
            D++  Y IG G +G   K      G+ L  K+          A+++  ++E+  L +++
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL--DYGSMTEAEKQMLVSEVNLLRELK 63

Query: 185 HRNIVKFYG--FCSHARHSFLVYEYLERGSLATNLSN 219
           H NIV++Y           ++V EY E G LA+ ++ 
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITK 100

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G V++     P    L  A+K           + +++FL E   + +  H +IV
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCK---NCTSDSVREKFLQEALTMRQFDHPHIV 79

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           K  G  +     +++ E    G L
Sbjct: 80  KLIGVITENPV-WIIMELCTLGEL 102

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 134 IGNGGHGSVYKAEL-PSGEFL----AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G+VYK    P GE +    A+K+             KE L E   +  + + ++
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
            +  G C       L+ + +  G L
Sbjct: 80  CRLLGICL-TSTVQLITQLMPFGCL 103

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 133 CIGNGGHGSVYKAE---LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           CI +GG G +Y A    + +G  + +K       GD  A Q   +AE + L ++ H +IV
Sbjct: 87  CIAHGGLGWIYLALDRNV-NGRPVVLKGLVHS--GDAEA-QAMAMAERQFLAEVVHPSIV 142

Query: 190 KFYGFCSHARHS-----FLVYEYLERGSLA 214
           + + F  H         ++V EY+   SL 
Sbjct: 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLK 172

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 123 RAKNDFDAKYCIGN----GGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEI 177
             K D +  Y + N    G  G V  A +  +    A KK    +P   + D   F  EI
Sbjct: 2   STKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKK----IPKYFVEDVDRFKQEI 57

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           E +  + H NI++ Y         +LV E    G L
Sbjct: 58  EIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGEL 93

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 134 IGNGGHGSVYKAELPSGEFL---AVK--KFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G+V K      + +   AVK  K  +  P    A + E LAE   + ++ +  I
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDP----ALKDELLAEANVMQQLDNPYI 80

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           V+  G C       LV E  E G L
Sbjct: 81  VRMIGICEAESW-MLVMEMAELGPL 104

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 120 EIIRAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEF 173
           E +  +  F  +Y I    G G  G V K  +  + +  AVK  + +        D    
Sbjct: 12  ENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK---DTSTI 68

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           L E+E L K+ H NI+K +     +   ++V E    G L
Sbjct: 69  LREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGEL 108

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 125 KNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIE 178
           +  F  +Y I    G G  G V K  +  + +  AVK  + +        D    L E+E
Sbjct: 17  QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK---DTSTILREVE 73

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            L K+ H NI+K +     +   ++V E    G L
Sbjct: 74  LLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGEL 108

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKK-FHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           +G G    VY+A  + +G  +A+K      +    +  +     E++   +++H +I++ 
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR--VQNEVKIHCQLKHPSILEL 76

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
           Y +   + + +LV E    G +
Sbjct: 77  YNYFEDSNYVYLVLEMCHNGEM 98

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 134 IGNGGHGSVYKAEL-PSGEFL----AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G+V+K    P GE +     +K       G Q    +     + A+  + H +I
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK-SGRQ--SFQAVTDHMLAIGSLDHAHI 77

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           V+  G C       LV +YL  GSL
Sbjct: 78  VRLLGLCP-GSSLQLVTQYLPLGSL 101

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 121 IIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFL 174
           ++ A   F   Y     +G G    V +     +G   A K  +   L      D ++  
Sbjct: 20  MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---DFQKLE 76

Query: 175 AEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            E     K++H NIV+ +         +LV++ +  G L
Sbjct: 77  REARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 115

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEALTKI 183
            DF+    +G G  G+VY A E  S   LA+K    + L    +  Q     E+E  + +
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQSHL 66

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           RH NI++ YG+   A   +L+ EY   G++
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTV 96

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G V+K     +G+ +A+KKF      D    +K  L EI  L +++H N+V   
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFL--ESEDDPVIKKIALREIRMLKQLKHPNLVNLL 68

Query: 193 GFCSHARHSFLVYEYLER 210
                 R   LV+EY + 
Sbjct: 69  EVFRRKRRLHLVFEYCDH 86

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-I 183
           ND +    +G+G  G V+K     +G  +AVK+       +   + K  L +++ + K  
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKE---ENKRILMDLDVVLKSH 81

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
               IV+ +G        F+  E +   +  
Sbjct: 82  DCPYIVQCFGTFITNTDVFIAMELMGTCAEK 112

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLA----EIEAL 180
           K  F  K  +G+G  G++    +     +AVK+              E  +    E++ L
Sbjct: 23  KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRI-----------LPECFSFADREVQLL 71

Query: 181 TKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            +   H N+++++      +  ++  E     +L
Sbjct: 72  RESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATL 104

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 134 IGNGGHGSVYKAEL--PSGEFL--AVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G V++     P    +  A+K           + +++FL E   + +  H +IV
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCK---NCTSDSVREKFLQEALTMRQFDHPHIV 454

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           K  G  +     +++ E    G L
Sbjct: 455 KLIGVIT-ENPVWIIMELCTLGEL 477

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 125 KNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH--SPLPGDQIADQKEFLAEI 177
           +   +  Y I    G+G    V K  E  +G   A K           +   ++E   E+
Sbjct: 7   QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV 66

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             L ++ H NI+  +    +     L+ E +  G L
Sbjct: 67  SILRQVLHPNIITLHDVYENRTDVVLILELVSGGEL 102

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 123 RAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVK-----KFHSPLPGDQIADQKE 172
            + + F   Y     +G G    V +    P+ +  AVK        S    +    ++ 
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 173 FLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            L E++ L K+  H NI++           FLV++ +++G L
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL 111

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G +G V K     +G  +A+KKF      D    +K  + EI+ L ++RH N+V   
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFL--ESDDDKMVKKIAMREIKLLKQLRHENLVNLL 90

Query: 193 GFCSHARHSFLVYEYLER 210
             C   +  +LV+E+++ 
Sbjct: 91  EVCKKKKRWYLVFEFVDH 108

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 105 ELLSILNFKGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPG 164
            + +I NF+           KN   ++  +G G  G+V       G  +AVK+       
Sbjct: 2   RIANIPNFEQSL--------KNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRM------ 47

Query: 165 DQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             I      L EI+ LT+   H N++++Y   +  R  ++  E     +L
Sbjct: 48  -LIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNL 95

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 125 KNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH--SPLPGDQIADQKEFLAEI 177
           +   +  Y I    G+G    V K  E  +G   A K           +   ++E   E+
Sbjct: 7   QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV 66

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             L ++ H N++  +    +     L+ E +  G L
Sbjct: 67  SILRQVLHHNVITLHDVYENRTDVVLILELVSGGEL 102

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 125 KNDFDAKYC----IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-FLAEIE 178
           +   D  +     +G+G  G V+   E  SG    +K     +  D+     E   AEIE
Sbjct: 17  QGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKT----INKDRSQVPMEQIEAEIE 72

Query: 179 ALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            L  + H NI+K +       + ++V E  E G L
Sbjct: 73  VLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGEL 107

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA-EIEALTKIRHRNIVKF 191
           +G GG G V +     +GE +A+K+       +     +E    EI+ + K+ H N+V  
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQ----ELSPKNRERWCLEIQIMKKLNHPNVVSA 77

Query: 192 Y------GFCSHARHSFLVYEYLERGSL 213
                     +      L  EY E G L
Sbjct: 78  REVPDGLQKLAPNDLPLLAMEYCEGGDL 105

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-I 183
            D      IG G +GSV K    PSG+ +AVK+  S +      +QK+ L +++ + +  
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEK---EQKQLLMDLDVVMRSS 78

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLA 214
               IV+FYG        ++  E +   S  
Sbjct: 79  DCPYIVQFYGALFREGDCWICMELMS-TSFD 108

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 127 DFDAKY-----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL 180
            F+  Y      +G G H  V     L + +  AVK     +       +     E+E L
Sbjct: 9   RFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKI----IEKQPGHIRSRVFREVEML 64

Query: 181 TKIR-HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            + + HRN+++   F       +LV+E +  GS+
Sbjct: 65  YQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI 98

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 127 DFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEAL 180
            F   Y +    G G    V +     +G   A K  +   L      D ++   E    
Sbjct: 3   KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---DFQKLEREARIC 59

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            K++H NIV+ +         +LV++ +  G L
Sbjct: 60  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 92

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 127 DFDAKYC----IGNGGHGSVYKA-ELPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEAL 180
            F  +Y     +G G    V +  ++ +G+  A    +   L      D ++   E    
Sbjct: 8   RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSAR---DHQKLEREARIC 64

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             ++H NIV+ +   S   H +L+++ +  G L
Sbjct: 65  RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL 97

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 127 DFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           +   KY I    G G  G V++  E  S +    K         +  DQ     EI  L 
Sbjct: 2   ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV-----KGTDQVLVKKEISILN 56

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             RHRNI+  +          +++E++    +
Sbjct: 57  IARHRNILHLHESFESMEELVMIFEFISGLDI 88

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 125 KNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFH--SPLPGDQIADQKEFLAEI 177
           + + D  Y      G+G    V K  E  +G   A K           +   +++   E+
Sbjct: 6   QENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREV 65

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             L +I+H N++  +    +     L+ E +  G L
Sbjct: 66  SILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 127 DFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVK--KFHSPLPGDQIADQKEFLAEIEA 179
             +  Y +    G+G    V K  +  +G+  A K  K        +   ++E   E+  
Sbjct: 2   MVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNI 61

Query: 180 LTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           L +IRH NI+  +    +     L+ E +  G L
Sbjct: 62  LREIRHPNIITLHDIFENKTDVVLILELVSGGEL 95

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 15/83 (18%)

Query: 134 IGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IGNG  G VY+A+L  SGE +A+KK           D++    E++ + K+ H NIV+  
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVL--------QDKRFKNRELQIMRKLDHCNIVRLR 113

Query: 193 GFCSHARHSF------LVYEYLE 209
            F   +          LV +Y+ 
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVP 136

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 87  QKRTLDSGEGQRSPQNSQELLSILNFKGKFIYVEIIRAKNDFDAKY----CIGNGGHGSV 142
               L   +     Q            G    +    A  +F  KY     IG G    V
Sbjct: 51  SANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVV 110

Query: 143 YKA-ELPSGEFLAVK---KFHSPLPGDQIADQKEFLA-EIEALTKIR-HRNIVKFYGFCS 196
            +     +G   AVK        L  +Q+ + +E    E   L ++  H +I+       
Sbjct: 111 RRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170

Query: 197 HARHSFLVYEYLERGSL 213
            +   FLV++ + +G L
Sbjct: 171 SSSFMFLVFDLMRKGEL 187

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           R   DF+   C+G GG G V++A+        A+K+   P   ++   +++ + E++AL 
Sbjct: 3   RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLP---NRELAREKVMREVKALA 59

Query: 182 KIRHRNIVKFYGFCSHARH 200
           K+ H  IV+++        
Sbjct: 60  KLEHPGIVRYFNAWLETPP 78

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD---QKEFLAEIEALT 181
           +DFD    +G G  G+VY A E  +   +A+K     L   Q+     + +   EIE  +
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKV----LFKSQLEKEGVEHQLRREIEIQS 69

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            +RH NI++ Y +    +  +L+ E+  RG L
Sbjct: 70  HLRHPNILRMYNYFHDRKRIYLMLEFAPRGEL 101

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 123 RAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEI 177
               +    +      G+G    V+   +  +G+  A+K                   EI
Sbjct: 2   MQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRD----SSLENEI 57

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             L KI+H NIV          H +LV + +  G L
Sbjct: 58  AVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL 93

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 134 IGNGGHGSVYKA---ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G G +G VYKA   +    +  A+K+         I+       EI  L +++H N++ 
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEG----TGISMSA--CREIALLRELKHPNVIS 82

Query: 191 FYG-FCSHARHS-FLVYEYLE 209
               F SHA    +L+++Y E
Sbjct: 83  LQKVFLSHADRKVWLLFDYAE 103

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKF 191
           +  GG   VY+A+ + SG   A+K+    L  ++    +  + E+  + K+  H NIV+F
Sbjct: 36  LAEGGFAFVYEAQDVGSGREYALKR----LLSNEEEKNRAIIQEVCFMKKLSGHPNIVQF 91

Query: 192 YGFCSHARHS-------FLVYEYLERGSLATNLSNDAAAEEL 226
               S  +         FL+   L +G L   L    +   L
Sbjct: 92  CSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPL 133

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRNI 188
           IG G +G VYKA+   GE  A+KK         +  + E      + EI  L +++H NI
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIR-------LEKEDEGIPSTTIREISILKELKHSNI 62

Query: 189 VKFYGFCSHARHSFLVYEYLE 209
           VK Y      +   LV+E+L+
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLD 83

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFH----SPLPGDQIADQKEFLAEIEALTKIRHRNI 188
           +G+G  G V  A E  + + +A+K       +     +         EIE L K+ H  I
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 189 VKFYGFCSHARHSFLVYEYLERGSL 213
           +K   F   A   ++V E +E G L
Sbjct: 78  IKIKNFF-DAEDYYIVLELMEGGEL 101

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 16/85 (18%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEF--------LAEIEALTKIR 184
           +G G   +VYKA +  + + +A+KK         +  + E         L EI+ L ++ 
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIK-------LGHRSEAKDGINRTALREIKLLQELS 70

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLE 209
           H NI+       H  +  LV++++E
Sbjct: 71  HPNIIGLLDAFGHKSNISLVFDFME 95

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-I 183
           +D +    +G G +G V K   +PSG+ +AVK+  + +      +QK  L +++   + +
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV---NSQEQKRLLMDLDISMRTV 63

Query: 184 RHRNIVKFYG 193
                V FYG
Sbjct: 64  DCPFTVTFYG 73

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           IG G +G VYKA    +GE +A+KK         +  + E      + EI  L ++ H N
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIR-------LDTETEGVPSTAIREISLLKELNHPN 63

Query: 188 IVKFYGFCSHARHSFLVYEYLE 209
           IVK           +LV+E+L 
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLH 85

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 14/82 (17%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           +GNG + +VYK     +G ++A+K+           D +E      + EI  + +++H N
Sbjct: 13  LGNGTYATVYKGLNKTTGVYVALKEVK--------LDSEEGTPSTAIREISLMKELKHEN 64

Query: 188 IVKFYGFCSHARHSFLVYEYLE 209
           IV+ Y          LV+E+++
Sbjct: 65  IVRLYDVIHTENKLTLVFEFMD 86

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G GG  +VY AE       +A+K    P    +   ++ F  E+   +++ H+NIV   
Sbjct: 19  LGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR-FEREVHNSSQLSHQNIVSMI 77

Query: 193 GFCSHARHSFLVYEYLERGSL 213
                    +LV EY+E  +L
Sbjct: 78  DVDEEDDCYYLVMEYIEGPTL 98

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEF 173
           E  R +        +G G  G V +A+        +   +AVK       G   ++ +  
Sbjct: 18  EFPRDRLKLGKP--LGRGAFGQVIEADAFGIDKTATCRTVAVK---MLKEGATHSEHRAL 72

Query: 174 LAEIEALTKI-RHRNIVKFYGFCSHARHS-FLVYEYLERGSLATNLSN 219
           ++E++ L  I  H N+V   G C+       ++ E+ + G+L+T L +
Sbjct: 73  MSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 120

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 123 RAKNDFDAKYCI----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEI 177
             ++     + +    G G    VY+  +  + +  A+K         +  D+K    EI
Sbjct: 46  SNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVL------KKTVDKKIVRTEI 99

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
             L ++ H NI+K            LV E +  G L
Sbjct: 100 GVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGEL 135

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 22/109 (20%)

Query: 114 GKFIYVEIIRAKNDF--DAKYC----IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQ 166
            K I V     K     +  Y     IGNG  G V++A  + S E  A+KK         
Sbjct: 22  NKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDEV-AIKKVLQ------ 74

Query: 167 IADQKEFLAEIEALTKIRHRNIVK-FYGFCSHARHS-----FLVYEYLE 209
             D++    E++ +  ++H N+V     F S+          LV EY+ 
Sbjct: 75  --DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVP 121

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRNI 188
           +G G +G VYKA+   G  +A+K+         +  + E      + EI  L ++ H NI
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIR-------LDAEDEGIPSTAIREISLLKELHHPNI 81

Query: 189 VKFYGFCSHARHSFLVYEYLE 209
           V         R   LV+E++E
Sbjct: 82  VSLIDVIHSERCLTLVFEFME 102

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 125 KNDFDAKY-----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           K      Y      +G G +G V +     +G+  A+K          + D  +   E++
Sbjct: 23  KYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK---------LLYDSPKARQEVD 73

Query: 179 ALTKI-RHRNIVKFYGFCSHARHS----FLVYEYLERGSL 213
              +     +IV       +  H      ++ E +E G L
Sbjct: 74  HHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGEL 113

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVK-------------KFHSPLPGDQIADQKE 172
           ND+     +  G    +   E    +F A+K                +       +   +
Sbjct: 31  NDYRIIRTLNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDD 89

Query: 173 FLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           F  E++ +T I++   +   G  ++    +++YEY+E  S+
Sbjct: 90  FKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSI 130

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           IG G +G+V+KA    + E +A+K+         + D  E      L EI  L +++H+N
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVR-------LDDDDEGVPSSALREICLLKELKHKN 62

Query: 188 IVKFYGFCSHARHSFLVYEYLE 209
           IV+ +      +   LV+E+ +
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCD 84

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           +G G +G VYKA +  + E +A+K+         +  ++E      + E+  L +++HRN
Sbjct: 42  LGEGTYGEVYKAIDTVTNETVAIKRIR-------LEHEEEGVPGTAIREVSLLKELQHRN 94

Query: 188 IVKFYGFCSHARHSFLVYEYLE 209
           I++      H     L++EY E
Sbjct: 95  IIELKSVIHHNHRLHLIFEYAE 116

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 21/88 (23%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEF----LAEIEALTKIRHRNI 188
            G G  G+V    E  +G  +A+KK         +     F    L  ++ L  + H NI
Sbjct: 31  AGQGTFGTVQLGKEKSTGMSVAIKK---------VIQDPRFRNRELQIMQDLAVLHHPNI 81

Query: 189 VK-FYGFCSHARHSF------LVYEYLE 209
           V+    F +            +V EY+ 
Sbjct: 82  VQLQSYFYTLGERDRRDIYLNVVMEYVP 109

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE--FLAEIEALTKIR-HRNIV 189
           +G G      K     S +  AVK          I+ + E     EI AL     H NIV
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVK---------IISKRMEANTQKEITALKLCEGHPNIV 69

Query: 190 KFYGFCSHARHSFLVYEYLERGSL 213
           K +       H+FLV E L  G L
Sbjct: 70  KLHEVFHDQLHTFLVMELLNGGEL 93

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 117 IYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQK 171
           I  ++ R    F   Y     IG G +    +     +    AVK          I   K
Sbjct: 9   IVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVK---------IIDKSK 59

Query: 172 EFLA-EIEALTK-IRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
                EIE L +  +H NI+         ++ ++V E ++ G L
Sbjct: 60  RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGEL 103

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEALTKIRHRN 187
           +G G + +VYK     +   +A+K+           + +E      + E+  L  ++H N
Sbjct: 10  LGEGTYATVYKGKSKLTDNLVALKEIR--------LEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 188 IVKFYGFCSHARHSFLVYEYLE 209
           IV  +      +   LV+EYL+
Sbjct: 62  IVTLHDIIHTEKSLTLVFEYLD 83

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIA 168
           KG+    ++I   +   + Y     I +G +G+V       G  +A+K+  + +   +  
Sbjct: 5   KGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTV 64

Query: 169 -------DQKEFLAEIEALTKIRHRNIVKFYG-FCSHARHSF----LVYEYLE 209
                    K  L EI  L    H NI+     F      +     LV E + 
Sbjct: 65  NILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR 117

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 118 YVEIIRAKNDF--DAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQ 170
              + R  +D+    +Y     IG G +G V +A +      +A+KK       + + D 
Sbjct: 39  TASMPRPHSDWQIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--EDLIDC 96

Query: 171 KEFLAEIEALTKIRHRNIVKFYG-FCSHARHSF----LVYEYLE 209
           K  L EI  L ++ H ++VK            F    +V E  +
Sbjct: 97  KRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD 140

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 121 IIRAKNDFDAKYCI-----GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFL 174
             ++  +F+  Y +     G G    V +     +G+  A K       G     + E L
Sbjct: 19  YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQD--CRAEIL 76

Query: 175 AEIEALTKIRHR-NIVKFYGFCSHARHSFLVYEYLERGSL 213
            EI  L   +    ++  +    +     L+ EY   G +
Sbjct: 77  HEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEI 116

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKF 191
           +G G +G V +     + E  A+K          + D  +   E+E   +  +  +IV+ 
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALK---------MLQDCPKARREVELHWRASQCPHIVRI 76

Query: 192 YGFC----SHARHSFLVYEYLERGSL 213
                   +  +   +V E L+ G L
Sbjct: 77  VDVYENLYAGRKCLLIVMECLDGGEL 102

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +  G    V+   ++   E  A+K F       + ++ +       A  ++   +  +  
Sbjct: 70  LRVGDRSVVFLVRDVERLEDFALKVFTMGAENSR-SELERLHEATFAAARLLGESPEEAR 128

Query: 193 GFC 195
              
Sbjct: 129 DRR 131

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKF 191
           +G G +G V +     + E  A+K          + D  +   E+E   +  +  +IV+ 
Sbjct: 70  LGLGINGKVLQIFNKRTQEKFALK---------MLQDCPKARREVELHWRASQCPHIVRI 120

Query: 192 YGFC----SHARHSFLVYEYLERGSL 213
                   +  +   +V E L+ G L
Sbjct: 121 VDVYENLYAGRKCLLIVMECLDGGEL 146

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLA-EIEALTKIRHRNIVKF 191
           +G G +G V  A    + E +AVK     +   +  D  E +  EI     + H N+VKF
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKI----VDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
           YG        +L  EY   G L
Sbjct: 71  YGHRREGNIQYLFLEYCSGGEL 92

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 21/90 (23%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKE-F----LAEIEALTKIRHRN 187
           IG G  G V+KA    +G+ +A+KK         + ++KE F    L EI+ L  ++H N
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVL-------MENEKEGFPITALREIKILQLLKHEN 77

Query: 188 IVKFYGFCSHARHS--------FLVYEYLE 209
           +V     C              +LV+++ E
Sbjct: 78  VVNLIEICRTKASPYNRCKGSIYLVFDFCE 107

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 134 IGNGGHGSVYKAELPS-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G GG G VY+AE       +A+K     L  D +  +     E     +++  ++V  +
Sbjct: 42  VGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVF-RTRMQREARTAGRLQEPHVVPIH 100

Query: 193 GFCSHARHSFLVYEYLERGSLATNLSNDAA 222
            F       ++    +    LA  L     
Sbjct: 101 DFGEIDGQLYVDMRLINGVDLAAMLRRQGP 130

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQI--ADQKEFLAEIEALTKIRHRNIVK 190
           IG G    V  A  + +G  +A+K     +   Q+     ++   E+  +  + H NIVK
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKI----IDKTQLNPTSLQKLFREVRIMKILNHPNIVK 78

Query: 191 FYGFCSHARHSFLVYEYLERGSL 213
            +      +  +L+ EY   G +
Sbjct: 79  LFEVIETEKTLYLIMEYASGGEV 101

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLA-EIEALTKIRHRNIVKF 191
           +G G +G V  A    + E +AVK     +   +  D  E +  EI     + H N+VKF
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKI----VDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
           YG        +L  EY   G L
Sbjct: 71  YGHRREGNIQYLFLEYCSGGEL 92

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQI 167
             +F  VE+  +      +Y     IG+G  G V  A +      +A+KK   P      
Sbjct: 45  DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQ 102

Query: 168 ADQKEFLAEIEALTKIRHRNIVK 190
              K    E+  +  + H+NI+ 
Sbjct: 103 THAKRAYRELVLMKCVNHKNIIS 125

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQI 167
           K  F   ++ +   +    Y     +G+G +GSV  A +  SGE +A+KK   P      
Sbjct: 7   KKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSE 64

Query: 168 ADQKEFLAEIEALTKIRHRNIVKFYG-FCSHARHS-----FLVYEYLE 209
              K    E+  L  ++H N++     F   +        +LV  +++
Sbjct: 65  IFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ 112

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 126 NDF--DAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
            +      Y     IG G +G VY A +  + + +A+KK +     + + D K  L EI 
Sbjct: 20  KNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRILREIT 77

Query: 179 ALTKIRHRNIVKFYG-FCSHARHSF----LVYEYLE 209
            L +++   I++ Y          F    +V E  +
Sbjct: 78  ILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD 113

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G G  G V +  ++ SG+  A+KK           D +    E++ +  + H NI+K
Sbjct: 15  LGTGSFGIVCEVFDIESGKRFALKKVLQ--------DPRYKNRELDIMKVLDHVNIIK 64

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQI 167
              F  VEI  +      +Y     IG+G  G V  A +      +A+KK   P      
Sbjct: 8   DNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF--QNQ 65

Query: 168 ADQKEFLAEIEALTKIRHRNIVK 190
              K    E+  +  + H+NI+ 
Sbjct: 66  THAKRAYRELVLMKCVNHKNIIG 88

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQI 167
           +  F   E+ +   +  A Y     +G+G +G+V  A +  +G  +A+KK + P      
Sbjct: 8   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSE 65

Query: 168 ADQKEFLAEIEALTKIRHRNIVKFY 192
              K    E+  L  +RH N++   
Sbjct: 66  LFAKRAYRELRLLKHMRHENVIGLL 90

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 134 IGNGGHGSVYKAE---LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G GG   V+ A          +AVK   + L  D     + F  E +    + H  IV 
Sbjct: 20  LGFGGMSEVHLARDLRD--HRDVAVKVLRADLARDPSFYLR-FRREAQNAAALNHPAIVA 76

Query: 191 FY--GF--CSHARHSFLVYEYLERGSL 213
            Y  G          ++V EY++  +L
Sbjct: 77  VYDTGEAETPAGPLPYIVMEYVDGVTL 103

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG+G  G         + E +AVK     +      D+     EI     +RH NIV+F 
Sbjct: 28  IGSGNFGVARLMRDKLTKELVAVKY----IERGAAIDENVQR-EIINHRSLRHPNIVRFK 82

Query: 193 GFCSHARHSFLVYEYLERGSL 213
                  H  ++ EY   G L
Sbjct: 83  EVILTPTHLAIIMEYASGGEL 103

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVK-----KFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G+G  G V+ A      + + VK     K       +     K  L EI  L+++ H N
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTL-EIAILSRVEHAN 90

Query: 188 IVKFYGFCSHARHSFLVYEYLERG 211
           I+K      +     LV E    G
Sbjct: 91  IIKVLDIFENQGFFQLVMEKHGSG 114

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVK-----KFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V   +   +G  +AVK     K  S     +I        EI+ L   RH +
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIR------REIQNLKLFRHPH 77

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           I+K Y   S     F+V EY+  G L
Sbjct: 78  IIKLYQVISTPSDIFMVMEYVSGGEL 103

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 115 KFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD 169
            F   E+ +   +   +Y     +G+G +GSV  A +  +G  +AVKK   P     I  
Sbjct: 14  TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIH 71

Query: 170 QKEFLAEIEALTKIRHRNIVKFY 192
            K    E+  L  ++H N++   
Sbjct: 72  AKRTYRELRLLKHMKHENVIGLL 94

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 24/93 (25%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLA--------EIEALTKIR 184
           IG G +G+VYKA +  SG F+A+K          + +              E+  L ++ 
Sbjct: 17  IGVGAYGTVYKARDPHSGHFVALKSVR-------VPNGGGGGGGLPISTVREVALLRRLE 69

Query: 185 ---HRNIVKFYGFCSHARHS-----FLVYEYLE 209
              H N+V+    C+ +R        LV+E+++
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 102

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVK-----KFHSPLPGDQIADQKEFLAEIEALTKIRHRN 187
           +G G  G V   E   +G  +AVK     K  S     +I        EI+ L   RH +
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIK------REIQNLKLFRHPH 72

Query: 188 IVKFYGFCSHARHSFLVYEYLERGSL 213
           I+K Y   S     F+V EY+  G L
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGEL 98

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLA----EIEALTKIRHRNI 188
           +G G +G V +     +    AVK     L   ++       A    EI+ L ++RH+N+
Sbjct: 13  LGEGSYGKVKEVLDSETLCRRAVKI----LKKKKLRRIPNGEANVKKEIQLLRRLRHKNV 68

Query: 189 VKFYGFCSHA--RHSFLVYEYLERG 211
           ++      +   +  ++V EY   G
Sbjct: 69  IQLVDVLYNEEKQKMYMVMEYCVCG 93

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G V  A +  +   +A+KK     P +     +  L EI+ L + RH NI+   
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91

Query: 193 G-FCSHARHSF----LVYEYLE 209
               +          +V + +E
Sbjct: 92  DIIRAPTIEQMKDVYIVQDLME 113

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKE---FLAEIEALT 181
           +DF+    IG G    V   ++  +G+  A+K     +    +  + E   F  E + L 
Sbjct: 61  DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKI----MNKWDMLKRGEVSCFREERDVLV 116

Query: 182 KIRHRNIVK-FYGFCSHARHSFLVYEYLERGSLATNLSN 219
               R I +  + F     + +LV EY   G L T LS 
Sbjct: 117 NGDRRWITQLHFAFQD-ENYLYLVMEYYVGGDLLTLLSK 154

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G +G V  A   P+GE +A+KK     P D+       L EI+ L   +H NI+  +
Sbjct: 19  LGEGAYGVVCSATHKPTGEIVAIKKIE---PFDKPLFALRTLREIKILKHFKHENIITIF 75

Query: 193 G-FCSHARHSF----LVYEYLE 209
                 +  +F    ++ E ++
Sbjct: 76  NIQRPDSFENFNEVYIIQELMQ 97

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVK---KFHSPLPGDQIADQKEFLAEIEALTKIR----H 185
           +G GG G+V+    L     +A+K   + +  L    ++D      E+  L K+     H
Sbjct: 39  LGKGGFGTVFAGHRLTDRLQVAIKVIPR-NRVLGWSPLSDSVTCPLEVALLWKVGAGGGH 97

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERG 211
             +++   +        LV E     
Sbjct: 98  PGVIRLLDWFETQEGFMLVLERPLPA 123

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVK---KFHSPLPGDQIADQKEFLAEIEALTKIRHR--N 187
           +G+GG GSVY    +     +A+K   K      G+     +  + E+  L K+      
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPM-EVVLLKKVSSGFSG 109

Query: 188 IVKFYGFCSHARHSFLVYEY 207
           +++   +        L+ E 
Sbjct: 110 VIRLLDWFERPDSFVLILER 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.84
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.84
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.84
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.79
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.79
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.77
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.75
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.75
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.75
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.75
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.74
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.74
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.72
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.71
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.7
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.66
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.65
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.64
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.64
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.62
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.6
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.59
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.59
3uqc_A	286	Probable conserved transmembrane protein; structur	99.59
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.58
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.58
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.58
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.57
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.57
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.56
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.56
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.56
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.56
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.55
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.55
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.55
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.54
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.54
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.54
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.54
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.54
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.53
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.53
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.53
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.53
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.53
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.53
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.52
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.52
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.52
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.52
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.52
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.52
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.52
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.51
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.51
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.51
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.51
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.51
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.51
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.51
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.5
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.5
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.5
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.5
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.5
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.5
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.5
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.5
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.5
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.49
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.49
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.49
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.49
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.49
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.49
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.49
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.49
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.49
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.49
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.49
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.48
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.48
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.48
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.48
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.48
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.48
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.48
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.48
3niz_A	311	Rhodanese family protein; structural genomics, str	99.48
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.48
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.48
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.48
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.48
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.47
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.47
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.47
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.47
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.47
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.47
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.47
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.47
3bhy_A	283	Death-associated protein kinase 3; death associate	99.47
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.47
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.47
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.47
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.46
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.46
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.46
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.46
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.46
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.46
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.46
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.46
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.46
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.45
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.45
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.45
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.45
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.45
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.45
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.45
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.45
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.45
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.45
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.45
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.45
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.45
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.45
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.45
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.45
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.44
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.44
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.44
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.44
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.44
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.44
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.44
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.44
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.43
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.43
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.43
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.43
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.43
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.42
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.42
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.42
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.42
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.42
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.42
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.42
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.42
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.42
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.42
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.42
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.42
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.41
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.41
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.41
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.41
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.41
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.4
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.4
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.4
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.4
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.4
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.39
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.39
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.39
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.39
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.38
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.38
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.38
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.38
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.38
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.38
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.38
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.37
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.37
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.37
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.37
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.36
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.36
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.36
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.36
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.35
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.35
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.35
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.35
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.34
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.34
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.34
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.34
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.33
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.33
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.33
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.33
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.33
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.33
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.32
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.32
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.32
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.32
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.31
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.31
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.3
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.3
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.3
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.3
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.29
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.28
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.28
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.28
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.28
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.28
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.28
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.27
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.27
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.27
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.27
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.27
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.27
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.26
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.26
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.25
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.25
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.24
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.23
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.22
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.22
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.21
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.21
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.19
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.18
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.18
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.18
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.17
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.14
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.14
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.13
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.1
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.1
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.09
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.07
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.04
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.01
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.56
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.47
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.46
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	98.45
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.73
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.6
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.23
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.52
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	96.26
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	96.21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.14
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.06
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.49
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	94.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	93.93
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	93.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	93.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	93.28
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.25
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	92.89
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	92.88
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	92.78
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	92.17
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	91.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	91.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	91.56
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	91.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	90.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	90.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	90.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	90.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	89.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.79
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	89.09
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	88.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	88.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	88.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	88.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	88.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	88.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	88.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	87.93
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	87.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	87.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	87.13
3ats_A	357	Putative uncharacterized protein; hypothetical pro	85.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	85.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	85.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	85.24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	85.09
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	84.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	84.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	84.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	83.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	83.27
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	83.22
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	83.2
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	83.17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	82.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	82.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	82.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	82.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	82.17
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	82.16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	81.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	81.19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	81.15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	80.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	80.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	80.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	80.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	80.27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	80.25

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.84  E-value=4.8e-21  Score=151.21  Aligned_cols=92  Identities=32%  Similarity=0.617  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||+|.+.      ++..||||+++.    .+....++|.+|+++|++++|||||+++|+|.+.+
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~----~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~  116 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE----ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR  116 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC----CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc----CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            45667788999999999999763      478899999975    22335678999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+||||||++|+|.++|+..+
T Consensus       117 ~~~lV~Ey~~~G~L~~~l~~~~  138 (329)
T 4aoj_A          117 PLLMVFEYMRHGDLNRFLRSHG  138 (329)
T ss_dssp             SEEEEEECCTTCBHHHHHHTSS
T ss_pred             EEEEEEEcCCCCcHHHHHHhcC
Confidence            9999999999999999998654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.84  E-value=5.1e-21  Score=149.17  Aligned_cols=92  Identities=33%  Similarity=0.564  Sum_probs=77.5

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||+|.+.      ++..||||+++.    ......++|.+|+++|++++|||||+++|+|.+++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~----~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~   88 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD----ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   88 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECS----CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCC----CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            45777789999999999999763      477899999975    12335678999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+||||||++|+|.++|+..+
T Consensus        89 ~~~lV~Ey~~~G~L~~~l~~~~  110 (299)
T 4asz_A           89 PLIMVFEYMKHGDLNKFLRAHG  110 (299)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTS
T ss_pred             EEEEEEEcCCCCcHHHHHHhcC
Confidence            9999999999999999998643

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.84  E-value=6.9e-21  Score=149.02  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=76.3

Q ss_pred             ccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      +...+.||+|+||.||+|.+.      ++..||||+++....   ....++|.+|+.+|++++|||||+++|+|..++..
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~---~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~  104 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE---GPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL  104 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC---C-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC---hHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence            444567999999999999762      467899999975222   22457899999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||||++|||.++|+..+
T Consensus       105 ~lV~Ey~~~G~L~~~L~~~~  124 (308)
T 4gt4_A          105 SMIFSYCSHGDLHEFLVMRS  124 (308)
T ss_dssp             EEEEECCSSCBHHHHHHTTC
T ss_pred             EEEEEcCCCCcHHHHHHhhC
Confidence            99999999999999997543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.79  E-value=3.8e-19  Score=140.86  Aligned_cols=93  Identities=19%  Similarity=0.344  Sum_probs=75.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|+.||||++... . ......+.|.+|+.+|++++|||||++++++.+.+..+||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~-~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINIS-R-MSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECT-T-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehH-H-CCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            5688889999999999999975 47999999999752 2 2233567899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.++|+..
T Consensus       102 mEy~~gg~L~~~i~~~  117 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQ  117 (350)
T ss_dssp             EECCTTCBHHHHHHHT
T ss_pred             EeCCCCCcHHHHHHHc
Confidence            9999999999999643

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.79  E-value=4.7e-19  Score=138.26  Aligned_cols=91  Identities=27%  Similarity=0.403  Sum_probs=75.9

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      +++...+.||+|+||+||+|.+.+  .||||.++. .. .+....+.|.+|+.+|++++|||||+++|+|.. +..+|||
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~-~~-~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm  110 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKV-VD-PTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT  110 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCC-SS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEe-cC-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence            456777889999999999998753  599999874 22 223456789999999999999999999998864 5689999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      |||++|+|.++|+..+
T Consensus       111 Ey~~gGsL~~~l~~~~  126 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQE  126 (307)
T ss_dssp             ECCSSCBHHHHHHTSC
T ss_pred             EcCCCCCHHHHHhhcC
Confidence            9999999999997643

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.77  E-value=1.9e-19  Score=140.41  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=81.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++.. .+|+.||||.+... ...+....+.+.+|+++|++++|||||++++++.+++..+||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~-~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKR-HIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHH-HCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            5688889999999999999975 47999999999641 101112357799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      |||+++|+|.++|+..+.
T Consensus       111 mEy~~gG~L~~~i~~~~~  128 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIGS  128 (311)
T ss_dssp             ECCCTTEEHHHHHHHHSS
T ss_pred             EecCCCCCHHHHHHHcCC
Confidence            999999999999976543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.75  E-value=2.2e-18  Score=133.50  Aligned_cols=91  Identities=26%  Similarity=0.333  Sum_probs=74.7

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCeEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARHSFL  203 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~~~l  203 (226)
                      .....||+|+||.||+|... ++..||+|++... . ......+.|.+|+.+|++++|||||++++++..    .+..+|
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-~-~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR-K-LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGG-G-SCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchh-h-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            34567999999999999764 7889999999642 1 122345789999999999999999999999865    245799


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      |||||++|+|.++|++.+
T Consensus       107 vmEy~~gg~L~~~l~~~~  124 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKRFK  124 (290)
T ss_dssp             EEECCCSCBHHHHHHHHS
T ss_pred             EEeCCCCCCHHHHHHhcC
Confidence            999999999999997543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.75  E-value=1.9e-18  Score=135.17  Aligned_cols=86  Identities=33%  Similarity=0.483  Sum_probs=70.2

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHH--HHHHHHHhcCCCCcccceeeEEEeCC----e
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEF--LAEIEALTKIRHRNIVKFYGFCSHAR----H  200 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~--~~e~~~l~~l~h~nlv~l~g~~~~~~----~  200 (226)
                      ++...+.||+|+||+||+|.+ +|+.||||+++.    .   ..+.+  ..|+..+.+++|||||+++|+|..++    .
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~----~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~   75 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS----R---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ   75 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECG----G---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECc----c---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceE
Confidence            466778899999999999988 689999999864    1   12334  45566667889999999999997653    5


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+||||||++|+|.++|+..
T Consensus        76 ~~lV~Ey~~~gsL~~~l~~~   95 (303)
T 3hmm_A           76 LWLVSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHHC
T ss_pred             EEEEecCCCCCcHHHHHHhC
Confidence            79999999999999999754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.75  E-value=1.1e-18  Score=138.07  Aligned_cols=91  Identities=26%  Similarity=0.424  Sum_probs=78.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|...+.||+|+||.||+|... +|+.||||++.... ..   ..+.+.+|+.+|++++|||||++++++.+.+..+||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~-~~---~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK-QQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CS---SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCc-hh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            45777788999999999999764 79999999996521 11   235688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.++++..
T Consensus       150 mEy~~gg~L~~~l~~~  165 (346)
T 4fih_A          150 MEFLEGGALTDIVTHT  165 (346)
T ss_dssp             ECCCTTEEHHHHHHHS
T ss_pred             EeCCCCCcHHHHHHcC
Confidence            9999999999998753

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.75  E-value=2.8e-18  Score=133.75  Aligned_cols=94  Identities=21%  Similarity=0.447  Sum_probs=76.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      ++|...+.||+|+||.||++.. .+|..||||+++...   .....+.+.+|+.+|++++|||||++++++...+     
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~   81 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKL   81 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-----
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccc
Confidence            3578888999999999999975 479999999996521   2234578999999999999999999999986543     


Q ss_pred             -------eEEEEEEccCCCChhhhccCCcc
Q 040605          200 -------HSFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       200 -------~~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                             ..+||||||++|+|.++|+....
T Consensus        82 ~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~  111 (299)
T 4g31_A           82 QPSSPKVYLYIQMQLCRKENLKDWMNGRCT  111 (299)
T ss_dssp             -----CEEEEEEEECCCSCCHHHHHHTCCS
T ss_pred             cccCCCcEEEEEEecCCCCcHHHHHHhcCC
Confidence                   36899999999999999986543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.74  E-value=4.2e-18  Score=130.92  Aligned_cols=95  Identities=22%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++.. .+|+.||||.++.. ...+......+.+|+.+|++++|||||++++++.+++..++|
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~-~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKK-VLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHH-HcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            5788899999999999999976 47999999999752 222222456799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      |||+ +|+|.++|...+.
T Consensus        92 mEy~-~g~L~~~l~~~~~  108 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQRDK  108 (275)
T ss_dssp             EECC-CEEHHHHHHHSCS
T ss_pred             EeCC-CCCHHHHHHHcCC
Confidence            9999 5899999976543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.74  E-value=3.3e-18  Score=138.59  Aligned_cols=91  Identities=26%  Similarity=0.429  Sum_probs=79.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|...+.||+|+||.||+|... +|..||||++... ...   ..+.+.+|+.+|++++|||||++++++...+..|||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-~~~---~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQ---RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST-TCS---SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc-chh---HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            56888889999999999999764 7999999999752 222   245689999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.++++..
T Consensus       227 mEy~~gG~L~~~i~~~  242 (423)
T 4fie_A          227 MEFLEGGALTDIVTHT  242 (423)
T ss_dssp             EECCTTEEHHHHHHHS
T ss_pred             EeCCCCCcHHHHHhcc
Confidence            9999999999998743

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.72  E-value=2.1e-18  Score=135.97  Aligned_cols=88  Identities=24%  Similarity=0.271  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++.. .+|..||||+++...         .+.+|+.+|++++|||||++++++.+++..+||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~---------~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv  128 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV---------FRVEELVACAGLSSPRIVPLYGAVREGPWVNIF  128 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT---------CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH---------hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4566777899999999999976 479999999997521         124699999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      ||||++|+|.++|+..+.
T Consensus       129 mEy~~gg~L~~~l~~~~~  146 (336)
T 4g3f_A          129 MELLEGGSLGQLIKQMGC  146 (336)
T ss_dssp             ECCCTTCBHHHHHHHHSS
T ss_pred             EeccCCCcHHHHHHHcCC
Confidence            999999999999976543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.71  E-value=1.1e-17  Score=133.17  Aligned_cols=100  Identities=21%  Similarity=0.378  Sum_probs=80.5

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-Ccccce
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKF  191 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l  191 (226)
                      .++....++|...+.||+|+||.||+|...      .+..||||.+...   ......+.|.+|+.+|.+++| ||||++
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~---~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc---cChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            344445678888999999999999999753      2357999999652   222346789999999999965 899999


Q ss_pred             eeEEEeC-CeEEEEEEccCCCChhhhccCCc
Q 040605          192 YGFCSHA-RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       192 ~g~~~~~-~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +|+|..+ +..+||||||++|+|.++|+..+
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~  164 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  164 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTG
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcc
Confidence            9999765 56899999999999999998643

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.70  E-value=2.2e-18  Score=134.19  Aligned_cols=95  Identities=22%  Similarity=0.372  Sum_probs=73.8

Q ss_pred             cCccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||+||++..    ..++.||||.++....  .......+.+|+.+|++++|||||++++++.+++..
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATL--KVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEE--EEEECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHc--ChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence            4688889999999999999964    2577899999965211  111234688999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCcc
Q 040605          202 FLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +||||||++|+|.++|++.+.
T Consensus       102 ~ivmEy~~gg~L~~~l~~~~~  122 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSKEVM  122 (304)
T ss_dssp             EEEECCCTTCEEHHHHHHHCC
T ss_pred             EEEEEcCCCCCHHHHHHhcCC
Confidence            999999999999999976543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.66  E-value=3.9e-16  Score=131.87  Aligned_cols=91  Identities=21%  Similarity=0.453  Sum_probs=80.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|.+...    .....+.+.+|+.+|+.++|||||++++++...+..+||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc----chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            5788889999999999999976 47999999998651    223457789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.++|...
T Consensus       233 ~E~~~gg~L~~~i~~~  248 (573)
T 3uto_A          233 YEFMSGGELFEKVADE  248 (573)
T ss_dssp             EECCCCCBHHHHHTCT
T ss_pred             EeecCCCcHHHHHHHh
Confidence            9999999999999654

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.65  E-value=3.1e-16  Score=126.80  Aligned_cols=94  Identities=23%  Similarity=0.417  Sum_probs=77.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++..  .......+.+.+|+.+|+.++|||||++++++...      
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~--~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNA--FDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTT--TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcc--ccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence            4688888999999999999975 47999999999752  12233457889999999999999999999987643      


Q ss_pred             CeEEEEEEccCCCChhhhccCCcc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~~  222 (226)
                      +..+||||||+ |+|.++|...+.
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~~~~  154 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHSSQP  154 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTSSSC
T ss_pred             CEEEEEEeCCC-CCHHHHHHhcCC
Confidence            57899999996 789999987654

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.64  E-value=1.9e-15  Score=118.12  Aligned_cols=106  Identities=33%  Similarity=0.527  Sum_probs=91.6

Q ss_pred             CcccHHHHHHHhcCcccc------ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCc
Q 040605          114 GKFIYVEIIRAKNDFDAK------YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN  187 (226)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~------~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~n  187 (226)
                      ..+++.++..++++|...      +.||+|+||.||++.. ++..+|||++............+.+.+|+.++..++|||
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            468889999999999887      8899999999999987 688999999865322222334678999999999999999


Q ss_pred             ccceeeEEEeCCeEEEEEEccCCCChhhhccCC
Q 040605          188 IVKFYGFCSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       188 lv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      |+++++++...+..++||||+++|+|.+++...
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  124 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL  124 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTG
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhc
Confidence            999999999999999999999999999998743

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.64  E-value=3e-16  Score=123.78  Aligned_cols=106  Identities=32%  Similarity=0.625  Sum_probs=91.3

Q ss_pred             CCcccHHHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCccccee
Q 040605          113 KGKFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY  192 (226)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~  192 (226)
                      ...+++.++....++|...+.||+|+||.||++...+|..||||++.......   ....+.+|+.++..++||||++++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~   93 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG---GELQFQTEVEMISMAVHRNLLRLR   93 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch---HHHHHHHHHHHHHhccCCCccceE
Confidence            34678899999999999999999999999999988889999999986522111   224689999999999999999999


Q ss_pred             eEEEeCCeEEEEEEccCCCChhhhccCCc
Q 040605          193 GFCSHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       193 g~~~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++...+..++||||+++|+|.++++...
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  122 (326)
T 3uim_A           94 GFCMTPTERLLVYPYMANGSVASCLRERP  122 (326)
T ss_dssp             EEECCSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred             EEEecCCceEEEEEeccCCCHHHHHHhcc
Confidence            99999999999999999999999998643

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.62  E-value=3.1e-16  Score=123.52  Aligned_cols=101  Identities=36%  Similarity=0.624  Sum_probs=86.8

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCS  196 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~  196 (226)
                      ++.++...+++|...+.||+|+||.||++...++..||||++... .   ....+.+.+|+.++..++||||+++++++.
T Consensus        30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  105 (321)
T 2qkw_B           30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE-S---SQGIEEFETEIETLSFCRHPHLVSLIGFCD  105 (321)
T ss_dssp             CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC-C---SSHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred             cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc-C---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            334445567889999999999999999999888999999998652 1   124678999999999999999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+..++||||+++|+|.+++....
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~~~  130 (321)
T 2qkw_B          106 ERNEMILIYKYMENGNLKRHLYGSD  130 (321)
T ss_dssp             CTTCCEEEEECCTTCBTGGGSSSSC
T ss_pred             CCCeEEEEEEcCCCCcHHHHHhccC
Confidence            9999999999999999999997643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.60  E-value=7e-15  Score=115.84  Aligned_cols=103  Identities=23%  Similarity=0.305  Sum_probs=86.4

Q ss_pred             CcccHHHHHHHhcC----------ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc
Q 040605          114 GKFIYVEIIRAKND----------FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK  182 (226)
Q Consensus       114 ~~~~~~~l~~~~~~----------~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~  182 (226)
                      ..++++++..+++.          |.....||+|+||.||++... +|..||||.+..... .   ..+.+.+|+.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~-~---~~~~~~~E~~~l~~   98 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ-Q---RRELLFNEVVIMRD   98 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-C---SHHHHHHHHHHHTT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch-h---HHHHHHHHHHHHHh
Confidence            35777888777764          555678999999999999875 799999999975222 2   35779999999999


Q ss_pred             CCCCcccceeeEEEeCCeEEEEEEccCCCChhhhccCC
Q 040605          183 IRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       183 l~h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++++++...+..++||||+++|+|.+++...
T Consensus        99 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  136 (321)
T 2c30_A           99 YQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV  136 (321)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC
T ss_pred             CCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc
Confidence            99999999999999999999999999999999998753

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.59  E-value=2.6e-15  Score=120.01  Aligned_cols=92  Identities=25%  Similarity=0.298  Sum_probs=78.2

Q ss_pred             HHHhcCccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          122 IRAKNDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       122 ~~~~~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ....+.|...+.||+|+||+||+|..    ..+..||+|.+...   .   ....+.+|+++|..+ +|||||++++++.
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~---~---~~~~~~~E~~~l~~~~~h~nIv~l~~~~~   90 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT---S---HPIRIAAELQCLTVAGGQDNVMGVKYCFR   90 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT---S---CHHHHHHHHHHHHHTCSBTTBCCCSEEEE
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc---c---CHHHHHHHHHHHHHhcCCCCCceEEEEEE
Confidence            34457799999999999999999964    24678999998641   1   245788999999988 6999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccC
Q 040605          197 HARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ..+..++||||+++|+|.++++.
T Consensus        91 ~~~~~~lvmE~~~g~~L~~~~~~  113 (361)
T 4f9c_A           91 KNDHVVIAMPYLEHESFLDILNS  113 (361)
T ss_dssp             ETTEEEEEEECCCCCCHHHHHTT
T ss_pred             ECCEEEEEEeCCCcccHHHHHcC
Confidence            99999999999999999999864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.59  E-value=9.6e-15  Score=114.35  Aligned_cols=90  Identities=23%  Similarity=0.428  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+..    .+....+.|.+|+.++.+++||||+++++++...+..++|
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~----~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   85 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR----FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI   85 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC----CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc----CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence            46777889999999999999764 789999999854    2234567899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++++.
T Consensus        86 ~e~~~~~~L~~~l~~  100 (310)
T 3s95_A           86 TEYIKGGTLRGIIKS  100 (310)
T ss_dssp             EECCTTCBHHHHHHH
T ss_pred             EEecCCCcHHHHHHh
Confidence            999999999999975

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.59  E-value=7e-15  Score=114.03  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=80.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+... ...+....+.|.+|+..+.+++|+||+++++++...+..++|
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ-GVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT-CCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc-cccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            45888889999999999999775 5899999999762 222233457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++++.
T Consensus       110 ~e~~~g~~L~~~l~~  124 (286)
T 3uqc_A          110 AEWIRGGSLQEVADT  124 (286)
T ss_dssp             EECCCEEEHHHHHTT
T ss_pred             EEecCCCCHHHHHhc
Confidence            999999999999964

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.58  E-value=8.3e-15  Score=115.47  Aligned_cols=93  Identities=22%  Similarity=0.444  Sum_probs=77.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      ++|...+.||+|+||.||++... +|..||||+++....   ....+.+.+|+.++.+++||||+++++++...+     
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   82 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR---ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ   82 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST---TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc---hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence            45778889999999999999875 899999999975221   224678999999999999999999999986543     


Q ss_pred             ----------------------------------------------------eEEEEEEccCCCChhhhccCCc
Q 040605          200 ----------------------------------------------------HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ----------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                                                                          ..++||||+++|+|.+++....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  156 (332)
T 3qd2_B           83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC  156 (332)
T ss_dssp             HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC
T ss_pred             hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc
Confidence                                                                3799999999999999998654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.58  E-value=1.1e-15  Score=129.75  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCC--CCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPL--PGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~--~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ++|...++||+|+||.||++... +|..||||++....  .............++.++..++|||||++++++.+.+..+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            57888899999999999999764 79999999986310  0111111223344567788899999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCcc
Q 040605          203 LVYEYLERGSLATNLSNDAA  222 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~~  222 (226)
                      ||||||++|+|.++|...+.
T Consensus       269 lVmEy~~GGdL~~~l~~~~~  288 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGV  288 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCC
T ss_pred             EEEecCCCCcHHHHHHhcCC
Confidence            99999999999999976543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.58  E-value=4.6e-15  Score=119.26  Aligned_cols=92  Identities=24%  Similarity=0.448  Sum_probs=79.1

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      .+|...+.||+|+||.||+|...    ++..||||.++..   ......+.|.+|+.++.+++||||+++++++...+..
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  121 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG---YTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV  121 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc---cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence            46788899999999999999764    5778999998652   1223467899999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++|+..
T Consensus       122 ~lv~e~~~~~sL~~~l~~~  140 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKH  140 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTT
T ss_pred             EEEEeCCCCCcHHHHHHhC
Confidence            9999999999999999764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.57  E-value=1e-14  Score=113.50  Aligned_cols=95  Identities=25%  Similarity=0.402  Sum_probs=81.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .++..||+|.+... ........+.|.+|+.++.+++||||+++++++...+..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIP-PREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECC-SSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccC-ccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            4577888999999999999975 47899999998652 223334567899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus        90 ~e~~~g~~L~~~l~~~~  106 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG  106 (294)
T ss_dssp             EECCCSCBHHHHHHHHC
T ss_pred             EeCCCCCCHHHHHHhcC
Confidence            99999999999987543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.57  E-value=7.4e-15  Score=116.06  Aligned_cols=93  Identities=20%  Similarity=0.344  Sum_probs=80.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||||.+....  ......+.+.+|+.++..++||||+++++++...+..++|
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ--LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhc--CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            5688889999999999999976 589999999986521  1223457789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        93 ~e~~~~~~L~~~l~~~  108 (328)
T 3fe3_A           93 MEYASGGEVFDYLVAH  108 (328)
T ss_dssp             ECCCTTCBHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHc
Confidence            9999999999998654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.56  E-value=1e-14  Score=111.91  Aligned_cols=91  Identities=25%  Similarity=0.472  Sum_probs=79.9

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..||+|++... . .   ..+.+.+|+.++.+++||||+++++++...+..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~-~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-A-M---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   84 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-S-B---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-c-c---CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence            457778899999999999998888889999999752 1 1   3467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++..+
T Consensus        85 e~~~~~~L~~~l~~~~  100 (269)
T 4hcu_A           85 EFMEHGCLSDYLRTQR  100 (269)
T ss_dssp             ECCTTCBHHHHHHTTT
T ss_pred             EeCCCCcHHHHHHhcC
Confidence            9999999999997543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.56  E-value=9.7e-15  Score=114.46  Aligned_cols=95  Identities=35%  Similarity=0.476  Sum_probs=81.5

Q ss_pred             HhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ..++|...+.||+|+||.||++.. +|..||||.+... . ......+.|.+|+.++.+++||||+++++++...+..++
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~-~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQ-D-FHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI  111 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCC-C-CSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred             ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCC-C-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence            346788888999999999999976 6889999998652 2 223345789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.++++...
T Consensus       112 v~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A          112 VTEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             EEECCTTCBHHHHHHSTT
T ss_pred             EEecCCCCcHHHHHhhcC
Confidence            999999999999998653

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.56  E-value=2.2e-14  Score=114.82  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=80.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCc--hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQ--IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~--~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      +.|...+.||+|+||.||++... +|..+|+|.+........  ....+.+.+|+.++..++||||+++++++...+..+
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   91 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV   91 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence            56788889999999999999764 789999999975222111  113578999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.++|....
T Consensus        92 lv~e~~~gg~L~~~l~~~~  110 (361)
T 2yab_A           92 LILELVSGGELFDFLAQKE  110 (361)
T ss_dssp             EEEECCCSCBHHHHHTTCS
T ss_pred             EEEEcCCCCcHHHHHHhcC
Confidence            9999999999999997644

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.55  E-value=5e-15  Score=119.22  Aligned_cols=93  Identities=27%  Similarity=0.463  Sum_probs=80.1

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||+|... ++..||||.++..   ......+.|.+|+.+|.+++||||+++++++...+..++
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  189 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET---LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYI  189 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT---SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc---CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEE
Confidence            356777889999999999999875 7899999998642   122244678999999999999999999999998899999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.++|+..
T Consensus       190 v~e~~~~g~L~~~l~~~  206 (377)
T 3cbl_A          190 VMELVQGGDFLTFLRTE  206 (377)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHhc
Confidence            99999999999999754

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=114.06  Aligned_cols=92  Identities=27%  Similarity=0.461  Sum_probs=77.9

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++...    .+..||||.++..   ......+.|.+|+.++.+++||||+++++++...+..
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  125 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG---YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA  125 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC---CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence            45667789999999999999774    3446999999652   1223457899999999999999999999999988899


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++++..
T Consensus       126 ~lv~e~~~~~~L~~~l~~~  144 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTH  144 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTT
T ss_pred             EEEeeCCCCCcHHHHHHhc
Confidence            9999999999999999754

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.55  E-value=2.4e-14  Score=111.52  Aligned_cols=91  Identities=23%  Similarity=0.387  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||+||++.. .++..||+|.+.... ..   ..+.+.+|+.++..++||||+++++++...+..++|
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   95 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG-CS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc-cc---HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence            5688888999999999999975 578999999986521 11   356789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        96 ~e~~~~~~L~~~~~~~  111 (297)
T 3fxz_A           96 MEYLAGGSLTDVVTET  111 (297)
T ss_dssp             EECCTTCBHHHHHHHS
T ss_pred             EECCCCCCHHHHHhhc
Confidence            9999999999998753

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.54  E-value=1.1e-14  Score=111.55  Aligned_cols=93  Identities=19%  Similarity=0.333  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--CeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~~~l  203 (226)
                      ++|...+.||+|+||.||++.. ++..+|||.+...  .......+.|.+|+.++.+++||||+++++++...  +..++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVR--DWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCT--TCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEeccc--ccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            4577788999999999999987 4889999999752  22233457899999999999999999999999876  67899


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.++++...
T Consensus        87 v~e~~~~~~L~~~l~~~~  104 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGT  104 (271)
T ss_dssp             EEECCTTCBHHHHHHSCS
T ss_pred             eecccCCCcHHHHHhhcc
Confidence            999999999999998654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.54  E-value=1.5e-14  Score=119.23  Aligned_cols=91  Identities=23%  Similarity=0.437  Sum_probs=79.3

Q ss_pred             HhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ..++|...+.||+|+||.||+|...++..||||.++.. .    ...+.|.+|+.+|.+++||||+++++++. .+..++
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-S----MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI  259 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-S----BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-C----ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence            34667888899999999999999988889999999752 1    13578999999999999999999999986 667899


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.++|+..
T Consensus       260 v~e~~~~g~L~~~l~~~  276 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSD  276 (454)
T ss_dssp             EECCCTTCBHHHHHHSH
T ss_pred             EEeecCCCcHHHHHHhc
Confidence            99999999999999854

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.54  E-value=1.4e-14  Score=116.34  Aligned_cols=93  Identities=25%  Similarity=0.457  Sum_probs=79.0

Q ss_pred             cCccccceeccCCceeEEEEEc--------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL--------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||.||++..        .++..||||.++..   ......+.+.+|+.++.++ +||||+++++++.
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  157 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  157 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT---CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC---cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence            5677888999999999999964        23557999998652   2233567899999999999 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+..++||||+++|+|.++|+..+
T Consensus       158 ~~~~~~lv~e~~~~g~L~~~l~~~~  182 (370)
T 2psq_A          158 QDGPLYVIVEYASKGNLREYLRARR  182 (370)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHhhC
Confidence            9999999999999999999998643

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.54  E-value=1.9e-15  Score=123.80  Aligned_cols=102  Identities=23%  Similarity=0.253  Sum_probs=83.2

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFC  195 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~  195 (226)
                      .+.++....++|...+.||+|+||.||++... ++..+|+|++... ..........+.+|..++..++||||+++++++
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKW-EMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHH-HHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHH-HhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            34455556788999999999999999999875 5789999998531 000001123488999999999999999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccC
Q 040605          196 SHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ...+..++|||||++|+|.++|+.
T Consensus       144 ~~~~~~~lV~Ey~~gg~L~~~l~~  167 (437)
T 4aw2_A          144 QDDNNLYLVMDYYVGGDLLTLLSK  167 (437)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHT
T ss_pred             eeCCEEEEEEecCCCCcHHHHHHH
Confidence            999999999999999999999976

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.54  E-value=1.8e-14  Score=113.58  Aligned_cols=93  Identities=28%  Similarity=0.365  Sum_probs=77.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+......   ...+.+.+|+.++..++||||+++++++...+..++|
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc---chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            56888899999999999999765 7899999998642211   1346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++....
T Consensus        84 ~e~~~~~~L~~~l~~~~  100 (323)
T 3tki_A           84 LEYCSGGELFDRIEPDI  100 (323)
T ss_dssp             EECCTTEEGGGGSBTTT
T ss_pred             EEcCCCCcHHHHHhhcC
Confidence            99999999999998653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.53  E-value=3.6e-14  Score=111.98  Aligned_cols=96  Identities=19%  Similarity=0.277  Sum_probs=80.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCC--chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGD--QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~--~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      +.|...+.||+|+||.||++... +|..+|+|.+.......  .....+.+.+|+.++.+++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            34777889999999999999764 78999999986522111  1113578999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.+++....
T Consensus        91 lv~e~~~~~~L~~~l~~~~  109 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE  109 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS
T ss_pred             EEEEcCCCCCHHHHHHhcC
Confidence            9999999999999997643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.53  E-value=1e-14  Score=121.39  Aligned_cols=91  Identities=26%  Similarity=0.497  Sum_probs=79.4

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ..+|...+.||+|+||.||+|... ++..||||.++.. .    ...+.|.+|+.+|.+++||||++++++|...+..++
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~l  293 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-T----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI  293 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-S----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-c----cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEE
Confidence            355777889999999999999876 4889999998752 1    135789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.++|+..
T Consensus       294 v~E~~~~g~L~~~l~~~  310 (495)
T 1opk_A          294 ITEFMTYGNLLDYLREC  310 (495)
T ss_dssp             EEECCTTCBHHHHHHHS
T ss_pred             EEEccCCCCHHHHHHhc
Confidence            99999999999999753

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.53  E-value=1e-14  Score=115.23  Aligned_cols=95  Identities=24%  Similarity=0.402  Sum_probs=73.5

Q ss_pred             cCccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++..    .+|..+|+|.++.............+.+|+.++..++||||+++++++...+..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            5688888999999999999975    478999999997522111122346688999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        97 ~lv~e~~~~~~L~~~l~~~  115 (327)
T 3a62_A           97 YLILEYLSGGELFMQLERE  115 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHhC
Confidence            9999999999999998754

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.53  E-value=2.7e-14  Score=114.34  Aligned_cols=95  Identities=20%  Similarity=0.327  Sum_probs=81.2

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++... +|..||+|.+... . ......+.+.+|+.++.+++||||+++++++...+..++
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~-~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l  105 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTK-K-LSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL  105 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-T-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcc-c-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            356888899999999999999764 7899999999752 1 122345789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.+++....
T Consensus       106 v~e~~~gg~L~~~l~~~~  123 (362)
T 2bdw_A          106 VFDLVTGGELFEDIVARE  123 (362)
T ss_dssp             EECCCCSCBHHHHHTTCS
T ss_pred             EEecCCCCCHHHHHHHcC
Confidence            999999999999987543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.53  E-value=3.1e-14  Score=114.46  Aligned_cols=88  Identities=26%  Similarity=0.456  Sum_probs=71.2

Q ss_pred             cccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEc
Q 040605          129 DAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEY  207 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~  207 (226)
                      ...+.||+|+||.||++.. .+|..||+|.++..    .....+.+.+|+.++.+++||||+++++++...+..++||||
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~  167 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTR----GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEY  167 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccc----ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            3356799999999999976 47899999998751    223467899999999999999999999999999999999999


Q ss_pred             cCCCChhhhccCC
Q 040605          208 LERGSLATNLSND  220 (226)
Q Consensus       208 ~~~g~L~~~l~~~  220 (226)
                      +++|+|.+++...
T Consensus       168 ~~~~~L~~~l~~~  180 (373)
T 2x4f_A          168 VDGGELFDRIIDE  180 (373)
T ss_dssp             CTTCEEHHHHHHT
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999988643

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.53  E-value=2.6e-14  Score=110.37  Aligned_cols=89  Identities=25%  Similarity=0.480  Sum_probs=76.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..||+|.+... ..    ..+.+.+|++++.+++|+||+++++++...+..++||
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   98 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   98 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-SB----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-CC----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence            567778899999999999999888889999999752 11    2467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccC
Q 040605          206 EYLERGSLATNLSN  219 (226)
Q Consensus       206 e~~~~g~L~~~l~~  219 (226)
                      ||+++|+|.++++.
T Consensus        99 e~~~~~~L~~~l~~  112 (283)
T 3gen_A           99 EYMANGCLLNYLRE  112 (283)
T ss_dssp             CCCTTCBHHHHHHC
T ss_pred             eccCCCcHHHHHHH
Confidence            99999999999976

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.52  E-value=5.2e-14  Score=110.89  Aligned_cols=90  Identities=19%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+...     ......+.+|+.++..++||||+++++++...+..++|
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   79 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-----GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-----cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence            56788889999999999999765 6889999998641     12456789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        80 ~e~~~g~~L~~~l~~~   95 (321)
T 1tki_A           80 FEFISGLDIFERINTS   95 (321)
T ss_dssp             ECCCCCCBHHHHHTSS
T ss_pred             EEeCCCCCHHHHHHhc
Confidence            9999999999999764

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.52  E-value=3.6e-14  Score=113.59  Aligned_cols=90  Identities=26%  Similarity=0.335  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+.....     ..+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   94 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-----IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAII   94 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-----SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence            56888889999999999999765 789999999975221     236788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        95 ~e~~~~~~L~~~l~~~  110 (361)
T 3uc3_A           95 MEYASGGELYERICNA  110 (361)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHhc
Confidence            9999999999998653

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.52  E-value=2.3e-15  Score=122.40  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      .++....++|...+.||+|+||.||++... ++..+|+|.+... ..........+.+|..++..++||||+++++++.+
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~-~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKF-EMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehh-hhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            344455678999999999999999999765 6889999998531 00000012358899999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++++..
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~  163 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY  163 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC
Confidence            99999999999999999998753

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.52  E-value=1.1e-14  Score=115.49  Aligned_cols=95  Identities=23%  Similarity=0.289  Sum_probs=79.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.++... .........+.+|+.++..++||||+++++++...+..++|
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEV-IIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-HHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHH-hhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            56788899999999999999764 78999999986410 00111356789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus        84 ~E~~~gg~L~~~l~~~~  100 (337)
T 1o6l_A           84 MEYANGGELFFHLSRER  100 (337)
T ss_dssp             EECCTTCBHHHHHHHHS
T ss_pred             EeCCCCCcHHHHHHhcC
Confidence            99999999999987543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.52  E-value=1.9e-14  Score=110.23  Aligned_cols=90  Identities=28%  Similarity=0.476  Sum_probs=79.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..||+|.+... ..    ..+.+.+|+.++.+++||||+++++++...+..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SM----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT   82 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT-TB----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccC-CC----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence            567778899999999999998888889999999752 11    3467999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        83 e~~~~~~L~~~l~~~   97 (268)
T 3sxs_A           83 EYISNGCLLNYLRSH   97 (268)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             EccCCCcHHHHHHHc
Confidence            999999999998754

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.52  E-value=2.2e-14  Score=110.07  Aligned_cols=94  Identities=28%  Similarity=0.409  Sum_probs=74.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++.. .+..+|||.++...........+.+.+|+.++..++||||+++++++...+..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            4677888999999999999987 488999999865222222224578999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++...
T Consensus        86 e~~~~~~L~~~~~~~  100 (271)
T 3dtc_A           86 EFARGGPLNRVLSGK  100 (271)
T ss_dssp             ECCTTEEHHHHHTSS
T ss_pred             EcCCCCCHHHHhhcC
Confidence            999999999998654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.52  E-value=3.5e-14  Score=116.85  Aligned_cols=89  Identities=29%  Similarity=0.521  Sum_probs=77.2

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-eEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-HSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-~~~l  203 (226)
                      .++|...+.||+|+||.||+|... |..||||.++.. .     ..+.|.+|+.+|.+++||||+++++++...+ ..++
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~-~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~i  264 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-A-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI  264 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSC-T-----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEE
T ss_pred             hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCc-h-----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEE
Confidence            356777889999999999999874 789999999752 1     2478999999999999999999999987765 7899


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.++|+..
T Consensus       265 v~e~~~~g~L~~~l~~~  281 (450)
T 1k9a_A          265 VTEYMAKGSLVDYLRSR  281 (450)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHhc
Confidence            99999999999999854

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=110.93  Aligned_cols=93  Identities=26%  Similarity=0.441  Sum_probs=78.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC--eEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR--HSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~--~~~  202 (226)
                      +.|...+.||+|+||.||++... ++..||||.+.....   ....+.+.+|+.++.+++||||+++++++...+  ..+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF---LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc---cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            45777889999999999999765 689999999864211   123577899999999999999999999997755  779


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.+++....
T Consensus        86 lv~e~~~~~~L~~~l~~~~  104 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPS  104 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGG
T ss_pred             EEEeCCCCCCHHHHHHHhc
Confidence            9999999999999998654

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.51  E-value=3e-14  Score=113.39  Aligned_cols=94  Identities=21%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|..++.++ +||||+++++++...+..++
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE-LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG-GSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhH-HhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            45778889999999999999765 6889999999752 222233456788999999987 89999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        88 v~e~~~gg~L~~~l~~~  104 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQ  104 (345)
T ss_dssp             EECCCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHc
Confidence            99999999999998754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.51  E-value=1.4e-14  Score=115.60  Aligned_cols=101  Identities=21%  Similarity=0.385  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccc
Q 040605          118 YVEIIRAKNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVK  190 (226)
Q Consensus       118 ~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~  190 (226)
                      ..++....++|...+.||+|+||.||++..      .++..||||.++..   ......+.+.+|++++.++ +||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc---CCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            344444567888899999999999999963      35679999999652   2223457899999999999 7999999


Q ss_pred             eeeEEEeCC-eEEEEEEccCCCChhhhccCCc
Q 040605          191 FYGFCSHAR-HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       191 l~g~~~~~~-~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +++++...+ ..++||||+++|+|.++|+...
T Consensus        91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~  122 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  122 (359)
T ss_dssp             EEEEECSTTSCCEEEEECCTTEEHHHHHHTTT
T ss_pred             eeeeeecCCCceEEEEEecCCCcHHHHHHhcc
Confidence            999998755 4899999999999999998654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.51  E-value=8.9e-14  Score=112.26  Aligned_cols=91  Identities=19%  Similarity=0.357  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..+|+|.+...    .......+.+|+.++..++||||+++++++...+..++|
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~----~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP----YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc----chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            56888889999999999999764 7889999998651    122456799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus       127 ~E~~~gg~L~~~l~~~  142 (387)
T 1kob_A          127 LEFLSGGELFDRIAAE  142 (387)
T ss_dssp             EECCCCCBHHHHTTCT
T ss_pred             EEcCCCCcHHHHHHhh
Confidence            9999999999999754

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.51  E-value=1.3e-14  Score=114.15  Aligned_cols=95  Identities=22%  Similarity=0.398  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..+|+|.++... .......+.+.+|..++..++||||+++++++...+..++|
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI-VVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-HHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            56788889999999999999764 78999999986410 00112356788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.++|+...
T Consensus        85 ~e~~~gg~L~~~l~~~~  101 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ  101 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS
T ss_pred             EeCCCCCCHHHHHHHcC
Confidence            99999999999997543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.51  E-value=4.4e-14  Score=111.96  Aligned_cols=94  Identities=28%  Similarity=0.481  Sum_probs=80.6

Q ss_pred             HhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      ..++|...+.||+|+||.||++...      ++..||+|.++..   ......+.|.+|+.++.+++||||+++++++..
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            4567888899999999999999763      3478999998652   122345789999999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++|+..
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~  144 (343)
T 1luf_A          122 GKPMCLLFEYMAYGDLNEFLRSM  144 (343)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHT
T ss_pred             CCceEEEEecCCCCcHHHHHHHh
Confidence            99999999999999999999764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.51  E-value=5.2e-15  Score=120.33  Aligned_cols=103  Identities=23%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEE
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFC  195 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~  195 (226)
                      .+.++....++|...+.||+|+||.||++... +|..||+|+++.. ........+.+.+|..++..++||||+++++++
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~-~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKW-DMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHH-HhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            34445555688999999999999999999774 7899999998641 000111234588999999999999999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccCC
Q 040605          196 SHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+.+..++||||+++|+|.++|+..
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~  155 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKF  155 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhc
Confidence            9999999999999999999999753

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.50  E-value=3.7e-14  Score=116.79  Aligned_cols=89  Identities=25%  Similarity=0.483  Sum_probs=77.5

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .++|...+.||+|+||.||+|....+..||||.++.. . .   ..+.|.+|+.+|.+++||||+++++++.. +..++|
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~-~-~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv  256 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-T-M---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  256 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-S-S---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccC-C-C---CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence            3567788899999999999999887788999998752 1 1   34789999999999999999999999875 678999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++|+.
T Consensus       257 ~e~~~~gsL~~~l~~  271 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKG  271 (452)
T ss_dssp             ECCCTTCBHHHHHSH
T ss_pred             ehhhcCCCHHHHHHh
Confidence            999999999999975

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.50  E-value=4.1e-14  Score=112.73  Aligned_cols=90  Identities=23%  Similarity=0.368  Sum_probs=73.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++... ++..||||.+....      ..+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        53 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  126 (349)
T 2w4o_A           53 DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV  126 (349)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch------hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence            56788889999999999999775 67899999997521      235688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus       127 ~e~~~~~~L~~~l~~~~  143 (349)
T 2w4o_A          127 LELVTGGELFDRIVEKG  143 (349)
T ss_dssp             ECCCCSCBHHHHHTTCS
T ss_pred             EEeCCCCCHHHHHHhcC
Confidence            99999999999997654

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.50  E-value=1.4e-13  Score=107.69  Aligned_cols=93  Identities=24%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++.. .+|..||+|.+.. ....+......+.+|+.++.+++||||+++++++...+..++|
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~-~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI-FDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECT-TSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeeh-hhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            4678888999999999999975 4789999999975 2223334567899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.+++..
T Consensus       111 ~e~~~~~~L~~~l~~  125 (310)
T 2wqm_A          111 LELADAGDLSRMIKH  125 (310)
T ss_dssp             EECCCSCBHHHHHHH
T ss_pred             EecCCCCCHHHHHHH
Confidence            999999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.50  E-value=2.4e-14  Score=118.41  Aligned_cols=95  Identities=24%  Similarity=0.363  Sum_probs=79.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||+|... +|..||||.+... ..........+.+|+.++..++||||+++++++...+..++|
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~-~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQ-KIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHH-HHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhh-hccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46778889999999999999765 7999999998641 101111346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus        95 ~E~~~gg~L~~~l~~~~  111 (476)
T 2y94_A           95 MEYVSGGELFDYICKNG  111 (476)
T ss_dssp             EECCSSEEHHHHTTSSS
T ss_pred             EeCCCCCcHHHHHHhcC
Confidence            99999999999997654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=116.31  Aligned_cols=95  Identities=18%  Similarity=0.336  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|+.++..++||||+++++++...+..++|
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~-~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQ-KCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehh-hcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            45788889999999999999764 6889999998541 101112357889999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++....
T Consensus        94 ~e~~~gg~L~~~l~~~~  110 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQNV  110 (384)
T ss_dssp             ECCCTTEEHHHHHHTTC
T ss_pred             EecCCCCcHHHHHHhcC
Confidence            99999999999998653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.50  E-value=2e-14  Score=114.64  Aligned_cols=94  Identities=21%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+... ........+.+.+|+.++..++||||+++++++...+..++|
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ-KVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhH-HhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            46788889999999999999764 7899999998541 101112356789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++|+..
T Consensus       120 ~e~~~gg~L~~~l~~~  135 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRI  135 (350)
T ss_dssp             EECCTTCBHHHHHHHH
T ss_pred             EcCCCCCcHHHHHHHc
Confidence            9999999999999754

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.50  E-value=2.9e-14  Score=113.14  Aligned_cols=97  Identities=23%  Similarity=0.310  Sum_probs=80.3

Q ss_pred             HHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCC-CCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          122 IRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPL-PGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       122 ~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~-~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ....++|...+.||+|+||.||++.. .++..+|+|.+.... ........+.+.+|+.++.+++||||+++++++...+
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            34456788889999999999999976 478899999985310 0111224578999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhcc
Q 040605          200 HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~  218 (226)
                      ..++||||+++|+|.+++.
T Consensus       102 ~~~lv~e~~~gg~L~~~l~  120 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLN  120 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEE
T ss_pred             eEEEEEeCCCCCcHHHHHH
Confidence            9999999999999999996

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.50  E-value=3.6e-14  Score=113.79  Aligned_cols=92  Identities=26%  Similarity=0.425  Sum_probs=78.3

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||++...      ++..||||+++..   ........+.+|+.++.+++||||+++++++...+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~  147 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV---CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  147 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc---cChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            45777889999999999999742      4668999998642   12234567999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++||||+++|+|.++++..
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~  168 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRET  168 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHhh
Confidence            999999999999999999754

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.50  E-value=4.1e-14  Score=109.96  Aligned_cols=92  Identities=36%  Similarity=0.548  Sum_probs=77.2

Q ss_pred             cCccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--  198 (226)
                      ++|...+.||+|+||.||++.+     .++..||||++..    ......+.|.+|+.++.+++||||+++++++...  
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   85 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH----STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   85 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESC----CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEccc----CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            4577788999999999999974     3688999999865    2233457899999999999999999999998653  


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ...++||||+++|+|.++++..+
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~  108 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKHK  108 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHCG
T ss_pred             CceEEEEEeCCCCCHHHHHHhcc
Confidence            56899999999999999997643

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.49  E-value=1.6e-14  Score=113.12  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----e
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----H  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----~  200 (226)
                      ++|...+.||+|+||.||++.. .++..||||.++.. ...+......+.+|+.++.+++||||+++++++....    .
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRAD-LARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTT-TTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcc-ccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            5678888999999999999975 57899999999762 2223334568999999999999999999999986643    3


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.++++..
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~  110 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTE  110 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHhc
Confidence            49999999999999998754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.49  E-value=5.6e-14  Score=107.48  Aligned_cols=90  Identities=26%  Similarity=0.452  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..||+|.+... ..    ..+.+.+|+.++.+++||||+++++++...+..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~-~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT   82 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-TB----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEcccc-CC----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence            457777899999999999998888889999999752 11    2468999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        83 e~~~~~~L~~~~~~~   97 (267)
T 3t9t_A           83 EFMEHGCLSDYLRTQ   97 (267)
T ss_dssp             CCCTTCBHHHHHHHT
T ss_pred             eCCCCCcHHHHHhhC
Confidence            999999999999754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.49  E-value=7.7e-14  Score=115.82  Aligned_cols=95  Identities=25%  Similarity=0.405  Sum_probs=80.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++... +|..||||++..... ........+.+|+.++.+++||||+++++++...+..++|
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQV-KQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-CBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhc-ccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            45777889999999999999765 789999999865221 1122467899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++|+|.+++....
T Consensus       105 ~e~~~~~~L~~~~~~~~  121 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRK  121 (484)
T ss_dssp             ECCCCSCBHHHHHHTCS
T ss_pred             EecCCCCCHHHHHHhcC
Confidence            99999999999987654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.49  E-value=8.8e-14  Score=107.64  Aligned_cols=91  Identities=26%  Similarity=0.339  Sum_probs=78.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+.......   ..+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   98 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQV---PMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV   98 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCS---CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccch---hHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence            45778889999999999999764 78899999986522222   357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.+++..
T Consensus        99 ~e~~~~~~L~~~l~~  113 (285)
T 3is5_A           99 METCEGGELLERIVS  113 (285)
T ss_dssp             ECCCSCCBHHHHHHH
T ss_pred             EEeCCCCcHHHHHHh
Confidence            999999999998854

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.49  E-value=4.5e-14  Score=111.20  Aligned_cols=89  Identities=27%  Similarity=0.387  Sum_probs=74.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----eE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----HS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----~~  201 (226)
                      ++|...+.||+|+||.||++... +..||||++...     ......+..|+.++.+++||||+++++++....    ..
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   97 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ-----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL   97 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC-----chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence            56788889999999999999874 789999998641     123456677999999999999999999997744    46


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++++..
T Consensus        98 ~lv~e~~~~g~L~~~l~~~  116 (322)
T 3soc_A           98 WLITAFHEKGSLSDFLKAN  116 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            9999999999999998753

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.49  E-value=9.4e-14  Score=112.14  Aligned_cols=93  Identities=17%  Similarity=0.241  Sum_probs=80.3

Q ss_pred             cCccccceeccC--CceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNG--GHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g--~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ++|...+.||+|  +||.||++... +|..||||++....  ......+.+.+|+.+++.++||||+++++++...+..+
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  102 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEA--CSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW  102 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccc--cChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence            457888899999  99999999775 79999999997521  12234577889999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +||||+++|+|.+++...
T Consensus       103 lv~e~~~~~~L~~~l~~~  120 (389)
T 3gni_B          103 VVTSFMAYGSAKDLICTH  120 (389)
T ss_dssp             EEEECCTTCBHHHHHHHT
T ss_pred             EEEEccCCCCHHHHHhhh
Confidence            999999999999998754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.49  E-value=4.9e-14  Score=118.41  Aligned_cols=89  Identities=25%  Similarity=0.483  Sum_probs=77.4

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .++|...+.||+|+||.||+|...++..||||+++.. . .   ..+.|.+|+.+|.+++|+||+++++++.. +..+||
T Consensus       266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~-~-~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv  339 (535)
T 2h8h_A          266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-T-M---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  339 (535)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTT-S-S---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCC-C-C---CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEe
Confidence            3557778899999999999999887788999999752 1 1   34789999999999999999999999865 678999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.++|+.
T Consensus       340 ~e~~~~gsL~~~l~~  354 (535)
T 2h8h_A          340 TEYMSKGSLLDFLKG  354 (535)
T ss_dssp             ECCCTTEEHHHHHSH
T ss_pred             eehhcCCcHHHHHhh
Confidence            999999999999975

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.49  E-value=4.8e-14  Score=109.14  Aligned_cols=92  Identities=23%  Similarity=0.420  Sum_probs=78.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CC-------CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SG-------EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g-------~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      ++|...+.||+|+||.||++... ++       ..||+|.+..    ......+.+.+|+.++.+++||||+++++++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   83 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK----AHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC   83 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECG----GGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccc----ccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence            45777889999999999999664 33       4699999864    122346789999999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCCc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .+..++||||+++|+|.++++...
T Consensus        84 ~~~~~lv~e~~~~~~L~~~l~~~~  107 (289)
T 4fvq_A           84 GDENILVQEFVKFGSLDTYLKKNK  107 (289)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHHTG
T ss_pred             CCCCEEEEECCCCCCHHHHHHhCC
Confidence            999999999999999999997643

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.49  E-value=7.3e-14  Score=109.30  Aligned_cols=92  Identities=27%  Similarity=0.471  Sum_probs=78.9

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .+|...+.||+|+||.||++..      .++..||+|.++..   ......+.+.+|+.++.+++||||+++++++...+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   99 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN---ASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG   99 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC---CCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence            5677788999999999999964      24578999998652   22335678999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++||||+++|+|.+++...
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~  120 (314)
T 2ivs_A          100 PLLLIVEYAKYGSLRGFLRES  120 (314)
T ss_dssp             SCEEEEECCTTCBHHHHHHHT
T ss_pred             ceEEEEeecCCCCHHHHHHHH
Confidence            999999999999999999754

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.49  E-value=4.9e-14  Score=115.72  Aligned_cols=95  Identities=17%  Similarity=0.290  Sum_probs=78.8

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++.. .+|..+|+|.+...  .......+.+.+|+.++..++||||+++++++...+..++
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~--~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTK--KLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESC--SCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcc--cCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            35688888999999999999965 47899999998752  1222345779999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.+++....
T Consensus        88 v~E~~~gg~L~~~i~~~~  105 (444)
T 3soa_A           88 IFDLVTGGELFEDIVARE  105 (444)
T ss_dssp             EECCCBCCBHHHHHHHCS
T ss_pred             EEEeCCCCCHHHHHHHcC
Confidence            999999999999887543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.49  E-value=2.7e-14  Score=115.51  Aligned_cols=95  Identities=21%  Similarity=0.310  Sum_probs=77.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... ++..+|+|+++.... ......+.+.+|..++.++ +||||+++++++...+..++
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~-~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELV-NDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGT-C----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc-cCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            56888899999999999999765 678999999975211 1112335688899999876 89999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.+++...+
T Consensus       131 V~E~~~gg~L~~~l~~~~  148 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQR  148 (396)
T ss_dssp             EEECCTTCBHHHHHHHHS
T ss_pred             EEEcCCCCcHHHHHHHcC
Confidence            999999999999987543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.48  E-value=2.8e-14  Score=113.84  Aligned_cols=96  Identities=21%  Similarity=0.333  Sum_probs=79.3

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      .++|...+.||+|+||.||++... +|..||+|.++.. ........+.+.+|..++..+ +||||+++++++...+..+
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~-~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKD-VILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH-HHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHH-HhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            367888999999999999999764 6899999998641 001112346788999999988 7999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.++++..+
T Consensus       101 lv~E~~~gg~L~~~l~~~~  119 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSR  119 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS
T ss_pred             EEEeCCCCCcHHHHHHHcC
Confidence            9999999999999987543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.48  E-value=6.7e-14  Score=107.70  Aligned_cols=91  Identities=25%  Similarity=0.344  Sum_probs=78.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|++.....    ...+.+.+|+.++.+++||||+++++++...+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV----EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV   84 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence            45788889999999999999765 577999999865211    1357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        85 ~e~~~~~~L~~~~~~~  100 (277)
T 3f3z_A           85 MELCTGGELFERVVHK  100 (277)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EeccCCCcHHHHHHHc
Confidence            9999999999988654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.48  E-value=5e-14  Score=112.56  Aligned_cols=92  Identities=27%  Similarity=0.381  Sum_probs=80.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+...   ......+.+.+|+.++..++||||+++++++...+..++|
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE---IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC---CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc---cCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence            46788889999999999999765 7899999998752   1223457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++++..
T Consensus       110 ~e~~~~~~L~~~l~~~  125 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKKA  125 (360)
T ss_dssp             ECCCTTCBHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHc
Confidence            9999999999998754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.48  E-value=3e-14  Score=112.54  Aligned_cols=94  Identities=26%  Similarity=0.470  Sum_probs=79.1

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CC-----CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SG-----EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g-----~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ..++|...+.||+|+||.||++... .+     ..||+|.+...   ......+.+.+|+.++..+ +||||+++++++.
T Consensus        44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  120 (333)
T 2i1m_A           44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST---AHADEKEALMSELKIMSHLGQHENIVNLLGACT  120 (333)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc---cChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            3467888899999999999999753 22     47999998652   1223457899999999999 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCC
Q 040605          197 HARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..+..++||||+++|+|.+++...
T Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~  144 (333)
T 2i1m_A          121 HGGPVLVITEYCCYGDLLNFLRRK  144 (333)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHH
T ss_pred             cCCceEEEEecCCCCcHHHHHHHh
Confidence            999999999999999999998753

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.48  E-value=1.1e-13  Score=115.39  Aligned_cols=96  Identities=22%  Similarity=0.292  Sum_probs=77.1

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCc---------hhhHHHHHHHHHHHhcCCCCcccceeeE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQ---------IADQKEFLAEIEALTKIRHRNIVKFYGF  194 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~---------~~~~~~~~~e~~~l~~l~h~nlv~l~g~  194 (226)
                      .+.|...+.||+|+||.||++... ++..+|+|.+........         ....+.+.+|+.++.+++||||++++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            356888899999999999999765 688999999865211100         0235689999999999999999999999


Q ss_pred             EEeCCeEEEEEEccCCCChhhhccCC
Q 040605          195 CSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       195 ~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +...+..++||||+++|+|.+++...
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~  140 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINR  140 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHc
Confidence            99999999999999999999988654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.48  E-value=1.6e-13  Score=105.89  Aligned_cols=93  Identities=30%  Similarity=0.534  Sum_probs=80.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+......  ......+.+|+..+..+ +||||+++++++...+..++
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAG--SVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTT--SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccc--cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            56788889999999999999775 7999999998752221  22457889999999999 99999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        89 v~e~~~~~~L~~~l~~~  105 (289)
T 1x8b_A           89 QNEYCNGGSLADAISEN  105 (289)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHhh
Confidence            99999999999999753

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.48  E-value=1.1e-13  Score=109.00  Aligned_cols=96  Identities=19%  Similarity=0.247  Sum_probs=80.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCc--hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQ--IADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~--~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      +.|...+.||+|+||.||++... +|..+|+|.+........  ....+.+.+|+.++.+++||||+++++++...+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            45778889999999999999764 789999999865222111  113578999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.+++....
T Consensus        92 lv~e~~~~~~L~~~l~~~~  110 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKE  110 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCS
T ss_pred             EEEEcCCCCcHHHHHHhcC
Confidence            9999999999999997643

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.48  E-value=7.8e-14  Score=112.94  Aligned_cols=93  Identities=26%  Similarity=0.445  Sum_probs=78.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC--eEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR--HSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~--~~~  202 (226)
                      +.|...+.||+|+||.||++... +|..||||.+....   .....+.+.+|++++.+++||||+++++++...+  ..+
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNIS---FLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGG---GGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccc---ccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            45777889999999999999765 68999999986421   1123577889999999999999999999998755  679


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.++++...
T Consensus        86 lv~e~~~~g~L~~~l~~~~  104 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPS  104 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGG
T ss_pred             EEEecCCCCCHHHHHHhhh
Confidence            9999999999999998654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.48  E-value=8.1e-14  Score=109.24  Aligned_cols=92  Identities=26%  Similarity=0.419  Sum_probs=77.0

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||+||++...+|..||+|++....  ........+.+|+.++.+++||||+++++++...+..++||
T Consensus        21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDA--EDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred             hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccc--ccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence            5677888999999999999998889999999996521  11223577899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++ |+|.+++...
T Consensus        99 e~~~-~~l~~~~~~~  112 (311)
T 3niz_A           99 EFME-KDLKKVLDEN  112 (311)
T ss_dssp             ECCS-EEHHHHHHTC
T ss_pred             cCCC-CCHHHHHHhc
Confidence            9998 6888887654

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=107.29  Aligned_cols=94  Identities=28%  Similarity=0.422  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|++...  .......+.+.+|+.++.+++||||+++++++...+..++|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLES--EDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCC--CC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecc--ccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            46778889999999999999775 6899999998652  22223457789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++++|.++++..+
T Consensus        81 ~e~~~~~~l~~~~~~~~   97 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQR   97 (311)
T ss_dssp             EECCSEEHHHHHHHTSS
T ss_pred             EEeCCCchHHHHHhhhc
Confidence            99999999998876543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.48  E-value=7.8e-14  Score=109.21  Aligned_cols=94  Identities=17%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+... ...+....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSET-LSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGG-GGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcc-cccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            67888899999999999999764 7889999998652 112222357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++++|.+++...
T Consensus       113 ~e~~~~~~L~~~l~~~  128 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQ  128 (309)
T ss_dssp             EECCCCEEHHHHHHHH
T ss_pred             EEecCCCCHHHHHHhc
Confidence            9999999999998754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.48  E-value=1.1e-13  Score=107.43  Aligned_cols=94  Identities=20%  Similarity=0.274  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|+.++..++|+||+++++++...+..++|
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechh-hccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            45777889999999999999775 6789999998652 112233457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.+++...
T Consensus        94 ~e~~~~~~L~~~~~~~  109 (294)
T 2rku_A           94 LELCRRRSLLELHKRR  109 (294)
T ss_dssp             EECCTTCBHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999988643

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.48  E-value=1.4e-13  Score=105.73  Aligned_cols=92  Identities=28%  Similarity=0.372  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+......   ...+.+.+|+.++..++||||+++++++...+..++|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT---THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch---hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence            45778889999999999999765 7899999998642211   2457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++...
T Consensus        84 ~e~~~~~~L~~~l~~~   99 (276)
T 2yex_A           84 LEYCSGGELFDRIEPD   99 (276)
T ss_dssp             EECCTTEEGGGGSBTT
T ss_pred             EEecCCCcHHHHHhhc
Confidence            9999999999999764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.47  E-value=1.3e-13  Score=108.35  Aligned_cols=90  Identities=23%  Similarity=0.446  Sum_probs=65.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+.......   ..+.+.+|+.++.+++||||+++++++...+..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   81 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---TPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV   81 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTC---SCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---cHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence            56777889999999999999764 68999999997522211   346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||++ |+|.+++..
T Consensus        82 ~e~~~-~~L~~~l~~   95 (317)
T 2pmi_A           82 FEFMD-NDLKKYMDS   95 (317)
T ss_dssp             EECCC-CBHHHHHHH
T ss_pred             EEecC-CCHHHHHHh
Confidence            99998 799998864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.47  E-value=8.5e-14  Score=110.96  Aligned_cols=94  Identities=17%  Similarity=0.281  Sum_probs=77.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCC-CCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPL-PGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~-~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      +.|...+.||+|+||.||++.. .+|..||||.+.... ........+.+.+|+.++..++||||+++++++...+..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            3577888999999999999976 478999999985310 00111135789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      ||||+++|+|.+++..
T Consensus       104 v~e~~~g~~L~~~l~~  119 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVK  119 (351)
T ss_dssp             EEECCSSCBHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHH
Confidence            9999999999988764

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.47  E-value=2e-13  Score=107.04  Aligned_cols=90  Identities=23%  Similarity=0.420  Sum_probs=75.9

Q ss_pred             Cccc-cceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          127 DFDA-KYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       127 ~~~~-~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .|.. .+.||+|+||.||++.. .++..||||.+... ..   .....+.+|+.++.++ +||||+++++++...+..++
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~---~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-PG---HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-SS---CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-cc---hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            3444 36799999999999975 47899999999752 11   2357899999999885 79999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        89 v~e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           89 VFEKMRGGSILSHIHKR  105 (316)
T ss_dssp             EEECCTTCBHHHHHHHH
T ss_pred             EEEcCCCCcHHHHHhcc
Confidence            99999999999998754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.47  E-value=5.5e-14  Score=108.09  Aligned_cols=94  Identities=26%  Similarity=0.367  Sum_probs=79.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+... ........+.+.+|+..+..++||||+++++++...+..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQ-KIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccc-cccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            46778889999999999999775 7899999998541 101112346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.+++...
T Consensus        90 ~e~~~~~~L~~~l~~~  105 (276)
T 2h6d_A           90 MEYVSGGELFDYICKH  105 (276)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EeccCCCcHHHHHhcc
Confidence            9999999999998654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=117.40  Aligned_cols=84  Identities=25%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             eeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEccC
Q 040605          133 CIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLE  209 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~~  209 (226)
                      .||+|+||.||+|...   ++..||||.++....   ....+.|.+|+.+|.+++|||||+++++|.. +..++||||++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~  418 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE---KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG  418 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS---STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence            6999999999999764   456799999975322   1246789999999999999999999999975 56899999999


Q ss_pred             CCChhhhccCC
Q 040605          210 RGSLATNLSND  220 (226)
Q Consensus       210 ~g~L~~~l~~~  220 (226)
                      +|+|.++|+..
T Consensus       419 ~g~L~~~l~~~  429 (613)
T 2ozo_A          419 GGPLHKFLVGK  429 (613)
T ss_dssp             TCBHHHHHTTC
T ss_pred             CCcHHHHHhhc
Confidence            99999999754

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.47  E-value=2.2e-13  Score=105.65  Aligned_cols=89  Identities=22%  Similarity=0.319  Sum_probs=75.5

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +....+||+|+||.||++.. .++..||+|.+... .   ....+.+.+|+.++..++||||+++++++...+..++|||
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   99 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-D---SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME   99 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-C---C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-c---hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence            44456899999999999975 57889999998752 1   1235789999999999999999999999999999999999


Q ss_pred             ccCCCChhhhccCC
Q 040605          207 YLERGSLATNLSND  220 (226)
Q Consensus       207 ~~~~g~L~~~l~~~  220 (226)
                      |+++|+|.++++..
T Consensus       100 ~~~~~~L~~~l~~~  113 (295)
T 2clq_A          100 QVPGGSLSALLRSK  113 (295)
T ss_dssp             CCSEEEHHHHHHHT
T ss_pred             eCCCCCHHHHHHhh
Confidence            99999999999754

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.47  E-value=1.5e-13  Score=107.03  Aligned_cols=90  Identities=31%  Similarity=0.466  Sum_probs=73.9

Q ss_pred             CccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--C
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--R  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~  199 (226)
                      .|...+.||+|+||.||++.+     .++..||+|.+......   ...+.+.+|+.++..++||||+++++++...  +
T Consensus        22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   98 (302)
T 4e5w_A           22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG---NHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   98 (302)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred             hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc---hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence            466778899999999999973     46889999999752221   2457899999999999999999999999876  6


Q ss_pred             eEEEEEEccCCCChhhhccC
Q 040605          200 HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ..++||||+++|+|.++++.
T Consensus        99 ~~~lv~e~~~~~~L~~~l~~  118 (302)
T 4e5w_A           99 GIKLIMEFLPSGSLKEYLPK  118 (302)
T ss_dssp             CEEEEEECCTTCBHHHHHHH
T ss_pred             eEEEEEEeCCCCcHHHHHHh
Confidence            68999999999999999954

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.47  E-value=1.1e-13  Score=109.53  Aligned_cols=94  Identities=24%  Similarity=0.471  Sum_probs=78.6

Q ss_pred             hcCccccceeccCCceeEEEEEc--------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL--------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFC  195 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~  195 (226)
                      .++|...+.||+|+||.||++..        .++..||+|.+...   ......+.+.+|+.++.++ +||||+++++++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  110 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC  110 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC---CcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence            35688888999999999999975        35678999998652   2223467899999999999 899999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccCCc
Q 040605          196 SHARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ...+..++||||+++|+|.+++...+
T Consensus       111 ~~~~~~~lv~e~~~~~~L~~~l~~~~  136 (334)
T 2pvf_A          111 TQDGPLYVIVEYASKGNLREYLRARR  136 (334)
T ss_dssp             CSSSCCEEEEECCTTCBHHHHHHTTS
T ss_pred             ccCCceEEEEECCCCCcHHHHHHHhc
Confidence            99999999999999999999998654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.47  E-value=1.3e-13  Score=106.30  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=79.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCC--CchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPG--DQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~--~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+......  ......+.+.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45777889999999999999775 7899999998652211  11113578999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +||||+++++|.+++...
T Consensus        85 lv~e~~~~~~L~~~l~~~  102 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK  102 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHhc
Confidence            999999999999998653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.47  E-value=6.2e-14  Score=111.24  Aligned_cols=95  Identities=23%  Similarity=0.466  Sum_probs=78.5

Q ss_pred             HhcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ..++|...+.||+|+||.||++..      .++..||+|.+.....   ....+.+.+|+.++.++ +||||+++++++.
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  119 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGACT  119 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            346788889999999999999975      2456899999975221   12347899999999999 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+..++||||+++|+|.++|...+
T Consensus       120 ~~~~~~lv~e~~~~g~L~~~l~~~~  144 (344)
T 1rjb_A          120 LSGPIYLIFEYCCYGDLLNYLRSKR  144 (344)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTT
T ss_pred             eCCccEEEEecCCCCcHHHHHhhcc
Confidence            9999999999999999999998653

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.47  E-value=1.3e-13  Score=109.78  Aligned_cols=92  Identities=28%  Similarity=0.419  Sum_probs=77.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ..|...+.||+|+||.||++.. .+|..||||++... ........+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS-GKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESC-SSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccc-cccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            3477778999999999999975 57899999999752 222233456899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||++ |+|.+++..
T Consensus       133 ~e~~~-g~l~~~l~~  146 (348)
T 1u5q_A          133 MEYCL-GSASDLLEV  146 (348)
T ss_dssp             EECCS-EEHHHHHHH
T ss_pred             EecCC-CCHHHHHHH
Confidence            99998 788888753

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.47  E-value=3e-14  Score=113.33  Aligned_cols=96  Identities=23%  Similarity=0.367  Sum_probs=78.8

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ..++|...+.||+|+||.||++... +|..||+|.++.... ........+..|..++..+ +||||+++++++...+..
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-LMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHh-hhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            4467888999999999999999775 688999999864110 0011346788899999876 999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++|...
T Consensus        94 ~lv~E~~~gg~L~~~l~~~  112 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSC  112 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHHc
Confidence            9999999999999998753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.46  E-value=1.3e-13  Score=106.41  Aligned_cols=93  Identities=20%  Similarity=0.328  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+....  ......+.+.+|+.++.+++||||+++++++...+..++|
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKK--LSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeeccc--CCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            56888889999999999999764 68999999986421  1223457789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        84 ~e~~~~~~l~~~~~~~   99 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAR   99 (284)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999887643

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.46  E-value=1.3e-13  Score=109.20  Aligned_cols=94  Identities=20%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||.||++... ++..+|+|.+... ........+.+.+|+.++..++|+||+++++++...+..++|
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechh-hhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            45777889999999999999765 6789999998652 222233567899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.+++...
T Consensus       120 ~e~~~~~~L~~~~~~~  135 (335)
T 2owb_A          120 LELCRRRSLLELHKRR  135 (335)
T ss_dssp             ECCCTTCBHHHHHHHH
T ss_pred             EecCCCCCHHHHHhcc
Confidence            9999999999988643

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.46  E-value=8.3e-14  Score=108.94  Aligned_cols=93  Identities=24%  Similarity=0.436  Sum_probs=79.4

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||++..      .++..||+|.++..   ......+.+.+|+.++.++ +||||+++++++...
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   99 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS---AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc---hhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence            5677888999999999999974      35678999999752   2223457899999999999 999999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..++||||+++|+|.+++...+
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~  122 (313)
T 1t46_A          100 GPTLVITEYCCYGDLLNFLRRKR  122 (313)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTT
T ss_pred             CCcEEEEecCCCCCHHHHHHhcc
Confidence            99999999999999999997543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=111.62  Aligned_cols=93  Identities=26%  Similarity=0.448  Sum_probs=78.5

Q ss_pred             cCccccceeccCCceeEEEEEc--------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL--------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~--------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||.||++..        ..+..||||++...   ......+.+.+|++++.++ +||||+++++++.
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  145 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD---ATEKDLSDLISEMEMMKMIGKHKNIINLLGACT  145 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc---cCHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence            5677788999999999999974        23357999999652   2233457899999999999 9999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..+..++||||+++|+|.+++....
T Consensus       146 ~~~~~~lv~e~~~~g~L~~~l~~~~  170 (382)
T 3tt0_A          146 QDGPLYVIVEYASKGNLREYLQARR  170 (382)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             cCCceEEEEEecCCCcHHHHHHHhc
Confidence            9999999999999999999997643

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.46  E-value=6.9e-14  Score=107.68  Aligned_cols=94  Identities=22%  Similarity=0.407  Sum_probs=79.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|.+... ........+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKK-AMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehh-hhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            5678888999999999999976 57899999998541 101111246799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++...
T Consensus        90 ~e~~~~~~L~~~l~~~  105 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNR  105 (278)
T ss_dssp             EECCTTEEHHHHHHTC
T ss_pred             EecCCCCcHHHHHhhc
Confidence            9999999999999764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.46  E-value=3.5e-13  Score=104.21  Aligned_cols=93  Identities=28%  Similarity=0.437  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhh---HHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIAD---QKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~---~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++.. .++..||+|.+...........   .+.+.+|+.++.+++||||+++++++....  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            5677888999999999999976 4789999999865322221111   168999999999999999999999986554  


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        97 ~lv~e~~~~~~L~~~l~~~  115 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDK  115 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCT
T ss_pred             eEEEEecCCCCHHHHHhcc
Confidence            6999999999999988654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.46  E-value=3.9e-14  Score=109.18  Aligned_cols=94  Identities=28%  Similarity=0.485  Sum_probs=78.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+... ..........+.+|+.++.+++||||+++++++...+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKA-QLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEecc-ccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            56788889999999999999764 6779999998541 111111346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        88 ~e~~~~~~l~~~l~~~  103 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKL  103 (279)
T ss_dssp             ECCCTTEEHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhc
Confidence            9999999999988653

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.46  E-value=6.2e-14  Score=118.02  Aligned_cols=94  Identities=22%  Similarity=0.308  Sum_probs=79.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+... ..........+.+|+.+|..++||||+++++++...+..++|
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~-~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhH-hhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            56778889999999999999764 7999999998541 001111346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus       263 mEy~~gg~L~~~l~~~  278 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHM  278 (576)
T ss_dssp             ECCCCSCBHHHHHHSS
T ss_pred             EEcCCCCcHHHHHHhc
Confidence            9999999999998754

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.46  E-value=3.9e-13  Score=104.78  Aligned_cols=92  Identities=23%  Similarity=0.343  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||+|.. .++..||+|.+......   ...+.+.+|+.++..++||||+++++++...+..++|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   98 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE---DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   98 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS---TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence            4577788999999999999975 47899999999752222   2457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        99 ~e~~~~~~L~~~~~~~  114 (303)
T 3a7i_A           99 MEYLGGGSALDLLEPG  114 (303)
T ss_dssp             EECCTTEEHHHHHTTS
T ss_pred             EEeCCCCcHHHHHhcC
Confidence            9999999999998753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.45  E-value=2.2e-14  Score=117.97  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||||.+.... .........+.+|+.++..++||||+++++++...+..++|
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEV-IVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHH-HC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhh-hhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            5688889999999999999975 478999999986411 01111346788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus       227 ~e~~~~~~L~~~l~~~~  243 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER  243 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS
T ss_pred             EeeCCCCcHHHHHHhcC
Confidence            99999999999987543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.45  E-value=1.1e-13  Score=106.99  Aligned_cols=91  Identities=26%  Similarity=0.495  Sum_probs=79.2

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++... ++..||+|.+...     ....+.+.+|+.++.+++||||+++++++...+..++
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   86 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   86 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-----STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence            356778889999999999999775 5889999998651     1245789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        87 v~e~~~~~~L~~~~~~~  103 (288)
T 3kfa_A           87 ITEFMTYGNLLDYLREC  103 (288)
T ss_dssp             EEECCTTEEHHHHHHHC
T ss_pred             EEEcCCCCcHHHHHHhc
Confidence            99999999999999753

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.45  E-value=1.7e-13  Score=106.09  Aligned_cols=92  Identities=30%  Similarity=0.418  Sum_probs=77.8

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...+|..+|+|++....  .+....+.+.+|+.++.+++||||+++++++...+..++||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccc--cccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence            3577788999999999999988889999999986421  11123467899999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||++ |+|.+++...
T Consensus        80 e~~~-~~l~~~~~~~   93 (288)
T 1ob3_A           80 EHLD-QDLKKLLDVC   93 (288)
T ss_dssp             ECCS-EEHHHHHHTS
T ss_pred             EecC-CCHHHHHHhc
Confidence            9998 5999988753

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.45  E-value=1.3e-13  Score=114.75  Aligned_cols=93  Identities=23%  Similarity=0.356  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++... ++..+|+|.+.......  .....+.+|+.++..++||||+++++++...+..++|
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST--SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc--hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            45788889999999999999765 78899999987522111  1346799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus       115 ~e~~~~g~L~~~~~~~  130 (494)
T 3lij_A          115 MECYKGGELFDEIIHR  130 (494)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EecCCCCcHHHHHHHc
Confidence            9999999999988643

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=108.06  Aligned_cols=87  Identities=34%  Similarity=0.611  Sum_probs=74.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++.. .+..||+|.+...      ...+.|.+|+.++.+++||||+++++++.  +..++||
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~   78 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM   78 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence            4577778999999999999987 4788999998541      14578999999999999999999999886  4478999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++...
T Consensus        79 e~~~~~~L~~~l~~~~   94 (307)
T 2eva_A           79 EYAEGGSLYNVLHGAE   94 (307)
T ss_dssp             ECCTTCBHHHHHHCSS
T ss_pred             EcCCCCCHHHHHhccC
Confidence            9999999999998654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.45  E-value=2.3e-13  Score=107.34  Aligned_cols=84  Identities=29%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEcc
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .+.||+|+||.||++... ++..||||.+..       .....+.+|+.++..++ ||||+++++++...+..++||||+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-------~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~   88 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK-------RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL   88 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEG-------GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEECh-------hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence            367999999999999764 789999999864       13467889999999996 999999999999999999999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.+++....
T Consensus        89 ~~~~L~~~l~~~~  101 (325)
T 3kn6_A           89 NGGELFERIKKKK  101 (325)
T ss_dssp             CSCBHHHHHHHCS
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999997654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.45  E-value=2.6e-13  Score=104.51  Aligned_cols=89  Identities=24%  Similarity=0.440  Sum_probs=76.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...++..||+|.+... . .   ..+.+.+|+.++.+++||||+++++++. .+..++||
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~-~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~   86 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-S-M---SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT   86 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-S-S---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-c-c---cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEE
Confidence            457778899999999999999888889999998652 1 1   3578999999999999999999999886 45689999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.+++...
T Consensus        87 e~~~~~~L~~~l~~~  101 (279)
T 1qpc_A           87 EYMENGSLVDFLKTP  101 (279)
T ss_dssp             ECCTTCBHHHHTTSH
T ss_pred             ecCCCCCHHHHHhcC
Confidence            999999999999754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.45  E-value=1.5e-13  Score=107.16  Aligned_cols=91  Identities=23%  Similarity=0.386  Sum_probs=76.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+.....    .....+.+|+.++.+++||||+++.+++...+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA----FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc----cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            45777889999999999999764 789999999975211    1246788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        85 ~e~~~~~~L~~~l~~~  100 (304)
T 2jam_A           85 MQLVSGGELFDRILER  100 (304)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EEcCCCccHHHHHHHc
Confidence            9999999999988643

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.45  E-value=1.7e-13  Score=111.74  Aligned_cols=97  Identities=22%  Similarity=0.317  Sum_probs=76.3

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC----CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP----GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA  198 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~----~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~  198 (226)
                      ..++|...+.||+|+||.||++... ++..||||.+.....    .........+.+|+.++.+++||||+++++++. .
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            3578999999999999999999664 789999999864110    001112235889999999999999999999975 5


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..++||||+++|+|.+++....
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~  234 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNK  234 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSC
T ss_pred             CceEEEEEcCCCCcHHHHHhccC
Confidence            56899999999999999987654

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.45  E-value=6.8e-14  Score=112.39  Aligned_cols=95  Identities=24%  Similarity=0.357  Sum_probs=70.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHH-HhcCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEA-LTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~-l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.++.... ........+.+|..+ +..++||||+++++++...+..++
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~-~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAI-LKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGB-C-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHh-hhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            56888899999999999999765 688999999965211 111234567777776 577899999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.++|+..+
T Consensus       117 v~E~~~gg~L~~~l~~~~  134 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRER  134 (373)
T ss_dssp             EEECCCSCBHHHHHHHHS
T ss_pred             EEeCCCCCcHHHHHHhcC
Confidence            999999999999987543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.45  E-value=5.2e-13  Score=104.91  Aligned_cols=90  Identities=29%  Similarity=0.440  Sum_probs=75.5

Q ss_pred             ccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC--Ce
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA--RH  200 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~--~~  200 (226)
                      |...+.||+|+||.||++.+     .++..||||.+...   ......+.+.+|+.++.+++||||+++++++...  ..
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD---AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc---cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence            46778899999999998864     26789999999752   2223467899999999999999999999999874  67


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.+++...
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~  129 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPRH  129 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGGS
T ss_pred             EEEEEecccCCcHHHHHhhC
Confidence            89999999999999999764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.45  E-value=1.6e-13  Score=108.12  Aligned_cols=93  Identities=27%  Similarity=0.444  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||++..      .++..||||.+...   ........+.+|+.++.+++||||+++++++...+
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV---CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  106 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc---cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence            5688888999999999999974      35778999998642   12234578999999999999999999999999998


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++||||+++|+|.+++...+
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~  128 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETR  128 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTS
T ss_pred             CcEEEEecCCCCcHHHHHHhhc
Confidence            9999999999999999998643

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.45  E-value=2.7e-13  Score=105.49  Aligned_cols=94  Identities=23%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCC----------------------chhhHHHHHHHHHHHhc
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGD----------------------QIADQKEFLAEIEALTK  182 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~----------------------~~~~~~~~~~e~~~l~~  182 (226)
                      ++|...+.||+|+||.||++.. .++..||||.+.......                      .....+.+.+|+.++.+
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            5688888999999999999975 478899999986521110                      00123568999999999


Q ss_pred             CCCCcccceeeEEEe--CCeEEEEEEccCCCChhhhccC
Q 040605          183 IRHRNIVKFYGFCSH--ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       183 l~h~nlv~l~g~~~~--~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ++||||+++++++..  .+..++||||+++|+|.+++..
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~  131 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL  131 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc
Confidence            999999999999986  5678999999999999987654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.45  E-value=3.5e-13  Score=106.27  Aligned_cols=91  Identities=29%  Similarity=0.417  Sum_probs=76.9

Q ss_pred             cCccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--A  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~  198 (226)
                      ++|...+.||+|+||.||++.+     .++..||||.+..    ......+.+.+|+.++.+++|+||+++++++..  .
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   98 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQH----SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR   98 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESS----CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEecc----CCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence            4577788999999999999973     4688999999865    122345779999999999999999999999874  4


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++||||+++|+|.+++...
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~  120 (327)
T 3lxl_A           99 QSLRLVMEYLPSGCLRDFLQRH  120 (327)
T ss_dssp             CEEEEEEECCTTCBHHHHHHHH
T ss_pred             ceEEEEEeecCCCCHHHHHHhc
Confidence            6689999999999999999753

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.44  E-value=1.7e-13  Score=107.72  Aligned_cols=94  Identities=21%  Similarity=0.435  Sum_probs=79.7

Q ss_pred             HhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      ..++|...+.||+|+||.||+|...      ++..||+|.+...   ........+.+|+.++..++|+||+++++++..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   99 (322)
T 1p4o_A           23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   99 (322)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT---SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc---cCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence            4467888899999999999999653      3678999998642   222345679999999999999999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+++|+|.++++..
T Consensus       100 ~~~~~lv~e~~~~~~L~~~l~~~  122 (322)
T 1p4o_A          100 GQPTLVIMELMTRGDLKSYLRSL  122 (322)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHH
T ss_pred             CCccEEEEEeCCCCcHHHHHHHh
Confidence            89999999999999999999753

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.44  E-value=4.5e-14  Score=111.88  Aligned_cols=93  Identities=23%  Similarity=0.313  Sum_probs=76.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .++..||+|.+.... .........+.+|+.++..++||||+++++++..++..++|
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQL-LKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHH-HHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHH-ccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            4678888999999999999975 588999999985310 00011235789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+ +|+|.+++...
T Consensus        88 ~E~~-~g~l~~~l~~~  102 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEK  102 (336)
T ss_dssp             ECCC-CEEHHHHHHHH
T ss_pred             EECC-CCcHHHHHHHc
Confidence            9999 68999988654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.44  E-value=2.8e-13  Score=107.21  Aligned_cols=92  Identities=26%  Similarity=0.439  Sum_probs=76.5

Q ss_pred             cCccccceeccCCceeEEEEEcCC-----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS-----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~-----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||.||+|....     +..||+|.++..   ........+.+|+.++.+++||||+++++++...+.
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  120 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG---YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP  120 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC
Confidence            345567899999999999997642     235999998652   122345689999999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.++++..
T Consensus       121 ~~lv~e~~~~~~L~~~l~~~  140 (333)
T 1mqb_A          121 MMIITEYMENGALDKFLREK  140 (333)
T ss_dssp             EEEEEECCTTEEHHHHHHHT
T ss_pred             cEEEEeCCCCCcHHHHHHhC
Confidence            99999999999999999753

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.44  E-value=2.6e-13  Score=106.94  Aligned_cols=93  Identities=32%  Similarity=0.555  Sum_probs=76.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCe--EEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEF--LAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~--vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++... ++..  +|+|.+......   ...+.+.+|++++.++ +||||+++++++...+..
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~---~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK---DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL  101 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccch---HHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence            46778889999999999999764 5654  499988642211   2346799999999999 999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++||||+++|+|.++++..+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~  121 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSR  121 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTC
T ss_pred             EEEEecCCCCCHHHHHHhcc
Confidence            99999999999999998653

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.44  E-value=9.7e-14  Score=116.32  Aligned_cols=94  Identities=21%  Similarity=0.301  Sum_probs=79.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|++... ........+.+.+|+.++.+++||||+++.+++...+..++|
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~-~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKK-RLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhH-HhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            56777789999999999999775 7999999998641 101111346789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++|...
T Consensus       264 mE~~~gg~L~~~l~~~  279 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNV  279 (543)
T ss_dssp             ECCCTTCBHHHHHHTS
T ss_pred             EEeccCCCHHHHHHHh
Confidence            9999999999998754

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.44  E-value=3.1e-13  Score=104.05  Aligned_cols=93  Identities=27%  Similarity=0.497  Sum_probs=78.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~  202 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+....  ......+.+.+|+.++.+++||||+++++++..  .+..+
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGS--MTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEccc--CCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            56778889999999999999764 78999999997521  122345789999999999999999999998854  56889


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +||||+++|+|.+++...
T Consensus        84 lv~e~~~~~~L~~~l~~~  101 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKG  101 (279)
T ss_dssp             EEEECCTTEEHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHhh
Confidence            999999999999998753

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.44  E-value=3.3e-13  Score=105.05  Aligned_cols=90  Identities=24%  Similarity=0.426  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||++... ++..+|+|.+....    ....+.+.+|+.++..++||||+++++++...+..++|
T Consensus        19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS----EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred             cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC----HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence            56788889999999999999775 68899999986521    12457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.+++..
T Consensus        95 ~e~~~~~~l~~~~~~  109 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLE  109 (302)
T ss_dssp             EECCTTEEHHHHHHH
T ss_pred             EEeCCCCcHHHHHHh
Confidence            999999999998864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.44  E-value=6.9e-14  Score=111.11  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=74.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... +|..+|+|.+... .       ..+.+|++++.++ +||||+++++++...+..++
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~-~-------~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   93 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS-K-------RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV   93 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT-T-------CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc-c-------CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence            45888889999999999999764 7889999999752 1       1234678888877 79999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.+++...+
T Consensus        94 v~E~~~gg~L~~~i~~~~  111 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQK  111 (342)
T ss_dssp             EECCCCSCBHHHHHHTCT
T ss_pred             EEeCCCCCcHHHHHHHcC
Confidence            999999999999987654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.43  E-value=3.3e-13  Score=104.87  Aligned_cols=91  Identities=25%  Similarity=0.464  Sum_probs=76.9

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe------
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH------  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~------  197 (226)
                      .++|...+.||+|+||.||++.. .++..||+|.+..     .....+.+.+|+.++.+++||||+++++++..      
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   79 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-----TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVK   79 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE-----EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec-----cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhh
Confidence            35678888999999999999976 4789999999854     12345789999999999999999999998865      


Q ss_pred             -------CCeEEEEEEccCCCChhhhccCC
Q 040605          198 -------ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 -------~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                             .+..++||||+++|+|.++++..
T Consensus        80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  109 (303)
T 1zy4_A           80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSE  109 (303)
T ss_dssp             ------CEEEEEEEEECCCSCBHHHHHHHS
T ss_pred             hhcccccCCceEEEEecCCCCCHHHhhhcc
Confidence                   34678999999999999999743

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.43  E-value=5.3e-13  Score=103.52  Aligned_cols=91  Identities=24%  Similarity=0.380  Sum_probs=75.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++... ++..||+|++.....  .......+.+|+.++.+++||||+++++++...+..++|
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS--STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCC--cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence            35777889999999999999764 789999999975222  222457889999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||++ |+|.+++..
T Consensus        80 ~e~~~-~~l~~~~~~   93 (292)
T 3o0g_A           80 FEFCD-QDLKKYFDS   93 (292)
T ss_dssp             EECCS-EEHHHHHHH
T ss_pred             EecCC-CCHHHHHHh
Confidence            99998 466665543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.43  E-value=4.2e-13  Score=105.78  Aligned_cols=91  Identities=35%  Similarity=0.534  Sum_probs=75.8

Q ss_pred             cCccccceeccCCceeEEEEEc-----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-  199 (226)
                      .+|...+.||+|+||.||++..     .++..||+|.+...    .....+.+.+|+.++.+++||||+++++++...+ 
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  116 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS----TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR  116 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC----CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC----CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence            4567778999999999999973     46889999998752    2234578999999999999999999999986644 


Q ss_pred             -eEEEEEEccCCCChhhhccCC
Q 040605          200 -HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~~~  220 (226)
                       ..++|+||+++|+|.+++...
T Consensus       117 ~~~~lv~e~~~~~~L~~~l~~~  138 (326)
T 2w1i_A          117 RNLKLIMEYLPYGSLRDYLQKH  138 (326)
T ss_dssp             -CCEEEECCCTTCBHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHhc
Confidence             679999999999999999754

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.43  E-value=8.2e-14  Score=107.65  Aligned_cols=94  Identities=27%  Similarity=0.488  Sum_probs=78.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+... ........+.+.+|++++..++||||+++++++...+..++|
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKS-QLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEccc-ccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            46778889999999999999765 6788999998531 000111246799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        93 ~e~~~~~~L~~~l~~~  108 (284)
T 2vgo_A           93 LEFAPRGELYKELQKH  108 (284)
T ss_dssp             ECCCTTEEHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHhc
Confidence            9999999999998754

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.43  E-value=7.9e-14  Score=111.23  Aligned_cols=95  Identities=21%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      .++|...+.||+|+||.||++... +|..||+|.++... .......+.+..|..++..+ +||||+++.+++...+..+
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~-~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDV-VIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHH-HHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH-hhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            367888899999999999999775 57899999986411 00111356788999999988 8999999999999999999


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +||||+++|+|.++|+..
T Consensus        98 lv~E~~~gg~L~~~l~~~  115 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQV  115 (353)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHhc
Confidence            999999999999998753

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.42  E-value=3.6e-13  Score=105.58  Aligned_cols=90  Identities=22%  Similarity=0.427  Sum_probs=74.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~  200 (226)
                      ++|...+.||+|+||.||++.. .++..||+|.+..    ......+.+.+|+.++..++||||+++++++..    ...
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILC----HEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE  104 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEE----SSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEec----CCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence            5688888999999999999976 5889999999864    122356789999999999999999999999863    347


Q ss_pred             EEEEEEccCCCChhhhccC
Q 040605          201 SFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~  219 (226)
                      .++|+||+++|+|.+++..
T Consensus       105 ~~lv~e~~~~~~L~~~l~~  123 (317)
T 2buj_A          105 AWLLLPFFKRGTLWNEIER  123 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHH
Confidence            8899999999999999875

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.42  E-value=1.4e-13  Score=107.04  Aligned_cols=92  Identities=26%  Similarity=0.401  Sum_probs=64.6

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++... ++..||||.+......   ...+.+.+|+.++.+++||||+++++++...+..++
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   90 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ---TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL   90 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc---hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence            467888899999999999999764 7899999998642111   235678999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      ||||+++|+|.+++..
T Consensus        91 v~e~~~~~~L~~~l~~  106 (303)
T 2vwi_A           91 VMKLLSGGSVLDIIKH  106 (303)
T ss_dssp             EEECCTTCBHHHHHHH
T ss_pred             EehhccCCchHHHHHH
Confidence            9999999999999863

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.42  E-value=5e-13  Score=103.54  Aligned_cols=91  Identities=26%  Similarity=0.342  Sum_probs=74.8

Q ss_pred             ccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~~~  202 (226)
                      |.....||+|+||.||++... ++..||+|.+... . ......+.+.+|+.++.+++||||+++++++..    ....+
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~-~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR-K-LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGG-G-SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecch-h-hCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence            556678999999999999764 7789999998641 1 122346789999999999999999999999865    35689


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +||||+++|+|.+++...
T Consensus       106 lv~e~~~~~~L~~~l~~~  123 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRF  123 (290)
T ss_dssp             EEEECCCSCBHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHc
Confidence            999999999999999753

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.42  E-value=5.7e-13  Score=106.74  Aligned_cols=99  Identities=20%  Similarity=0.279  Sum_probs=81.4

Q ss_pred             HHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCch----hhHHHHHHHHHHHhcC-CCCcccceeeEE
Q 040605          122 IRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQI----ADQKEFLAEIEALTKI-RHRNIVKFYGFC  195 (226)
Q Consensus       122 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~----~~~~~~~~e~~~l~~l-~h~nlv~l~g~~  195 (226)
                      ....++|...+.||+|+||.||++... +|..||||.+.........    ...+.+.+|+.++.++ +||||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            334466888899999999999999875 7999999998753222111    1245688999999998 799999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccCC
Q 040605          196 SHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...+..++||||+++|+|.+++...
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~  194 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEK  194 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHH
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhc
Confidence            9999999999999999999998743

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.42  E-value=2.6e-13  Score=107.14  Aligned_cols=94  Identities=23%  Similarity=0.409  Sum_probs=76.2

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++.. .++..||||.++...  ......+.+.+|+.++.+++||||+++++++...+..++
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH--EEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccc--cccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            46788889999999999999965 478999999986522  111234678899999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||++ |+|.+++....
T Consensus       111 v~e~~~-~~L~~~~~~~~  127 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNP  127 (329)
T ss_dssp             EEECCS-EEHHHHHHHCT
T ss_pred             EEecCC-CCHHHHHhhcC
Confidence            999998 69999987543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.42  E-value=7.8e-13  Score=102.33  Aligned_cols=89  Identities=25%  Similarity=0.347  Sum_probs=73.6

Q ss_pred             ccccc-eeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          128 FDAKY-CIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       128 ~~~~~-~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      |.... .||+|+||.||++...   ++..||+|.++..   ......+.+.+|+.++.+++||||+++++++ ..+..++
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l   86 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG---TEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML   86 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc---cchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence            43333 8999999999999753   5778999999752   2223567899999999999999999999999 5567899


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus        87 v~e~~~~~~L~~~l~~~  103 (287)
T 1u59_A           87 VMEMAGGGPLHKFLVGK  103 (287)
T ss_dssp             EEECCTTEEHHHHHTTC
T ss_pred             EEEeCCCCCHHHHHHhC
Confidence            99999999999999754

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.42  E-value=4.3e-13  Score=105.49  Aligned_cols=93  Identities=25%  Similarity=0.434  Sum_probs=70.3

Q ss_pred             hcCccccceeccCCceeEEEEEcCCC----CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSG----EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g----~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .++|...+.||+|+||.||++.....    ..||||.++....  .....+.+.+|+.++.+++||||+++++++.....
T Consensus        22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADII--ASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEeccccc--CHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            45688889999999999999977533    2799999865211  12346789999999999999999999999987665


Q ss_pred             E------EEEEEccCCCChhhhccC
Q 040605          201 S------FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 ~------~lv~e~~~~g~L~~~l~~  219 (226)
                      .      ++|+||+++|+|.+++..
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~  124 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLA  124 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHH
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHh
Confidence            4      999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.42  E-value=4.9e-13  Score=105.62  Aligned_cols=93  Identities=26%  Similarity=0.457  Sum_probs=78.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|++... . ......+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLES-D-DDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESC-S-SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecC-C-CchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            45777889999999999999765 6899999998652 1 2223456788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++++|.+++...
T Consensus       103 ~e~~~~~~l~~~~~~~  118 (331)
T 4aaa_A          103 FEFVDHTILDDLELFP  118 (331)
T ss_dssp             EECCSEEHHHHHHHST
T ss_pred             EecCCcchHHHHHhhc
Confidence            9999999998876543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.42  E-value=1.2e-13  Score=109.71  Aligned_cols=90  Identities=21%  Similarity=0.428  Sum_probs=76.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCch-------------hhHHHHHHHHHHHhcCCCCccccee
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI-------------ADQKEFLAEIEALTKIRHRNIVKFY  192 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~-------------~~~~~~~~e~~~l~~l~h~nlv~l~  192 (226)
                      ++|...+.||+|+||.||++.. +|..||+|.+.........             ...+.+.+|+.++.+++||||++++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            5688889999999999999988 8999999998641111000             0127899999999999999999999


Q ss_pred             eEEEeCCeEEEEEEccCCCChhhh
Q 040605          193 GFCSHARHSFLVYEYLERGSLATN  216 (226)
Q Consensus       193 g~~~~~~~~~lv~e~~~~g~L~~~  216 (226)
                      +++...+..++||||+++|+|.++
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHH
Confidence            999999999999999999999999

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.42  E-value=1.3e-13  Score=114.53  Aligned_cols=93  Identities=24%  Similarity=0.384  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||||.+.....  .......+.+|+.++.+++||||+++++++...+..++|
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA--KNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHH--BCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccc--cchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            45778889999999999999764 789999999853111  111357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++|+|.+++...
T Consensus       100 ~e~~~~~~L~~~~~~~  115 (486)
T 3mwu_A          100 GELYTGGELFDEIIKR  115 (486)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHhc
Confidence            9999999999988653

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.42  E-value=2.4e-13  Score=109.29  Aligned_cols=91  Identities=26%  Similarity=0.493  Sum_probs=73.7

Q ss_pred             ccccceeccCCceeEEEEEcC--CC--CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELP--SG--EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSF  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~--~g--~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~  202 (226)
                      |...+.||+|+||.||+|...  ++  ..+|+|.+...   .+....+.|.+|+.++.+++||||++++++|.. .+..+
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~  167 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI---TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  167 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC---SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence            455678999999999999763  22  36899998642   222356789999999999999999999999865 45789


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.++++...
T Consensus       168 lv~e~~~~g~L~~~l~~~~  186 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRNET  186 (373)
T ss_dssp             EEEECCTTCBHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHhhcc
Confidence            9999999999999997643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.42  E-value=6.4e-13  Score=103.21  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=79.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCC-c----hhhHHHHHHHHHHHhcCC-CCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGD-Q----IADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~-~----~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||++... +|..||||.+....... .    ....+.+.+|+.++.+++ ||||+++++++...
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (298)
T 1phk_A           17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   96 (298)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccC
Confidence            56888899999999999999764 78899999997522111 0    113467889999999995 99999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..++||||+++|+|.+++...
T Consensus        97 ~~~~lv~e~~~~~~L~~~l~~~  118 (298)
T 1phk_A           97 TFFFLVFDLMKKGELFDYLTEK  118 (298)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH
T ss_pred             CeEEEEEeccCCCcHHHHHhcc
Confidence            9999999999999999998753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.41  E-value=8.3e-13  Score=103.37  Aligned_cols=88  Identities=30%  Similarity=0.502  Sum_probs=73.2

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||.||++... +|..||+|.+... .     ..+.+.+|+.++..++||||+++++++...+..++
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l  101 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE-S-----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI  101 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT-S-----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch-H-----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            466888899999999999999765 6899999998752 1     23679999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      ||||+++|+|.+++.
T Consensus       102 v~e~~~~~~L~~~~~  116 (314)
T 3com_A          102 VMEYCGAGSVSDIIR  116 (314)
T ss_dssp             EEECCTTEEHHHHHH
T ss_pred             EeecCCCCCHHHHHH
Confidence            999999999999986

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.41  E-value=2.8e-13  Score=106.04  Aligned_cols=100  Identities=21%  Similarity=0.396  Sum_probs=81.1

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccce
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKF  191 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l  191 (226)
                      .++....++|...+.||+|+||.||++..      .++..||||.+...   ......+.+.+|+.++.++ +||||+++
T Consensus        20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC---CCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34444457788899999999999999963      35679999999652   2223456899999999999 79999999


Q ss_pred             eeEEEeCC-eEEEEEEccCCCChhhhccCCc
Q 040605          192 YGFCSHAR-HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       192 ~g~~~~~~-~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++++...+ ..++||||+++|+|.+++....
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  127 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  127 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence            99997754 5899999999999999998654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.41  E-value=3.8e-13  Score=105.78  Aligned_cols=95  Identities=22%  Similarity=0.305  Sum_probs=74.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCC----CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP----GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~----~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||++... ++..||||.+.....    .........+.+|+.++.+++||||+++++++...+ 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            46888889999999999999764 688999999864211    011112346889999999999999999999987655 


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++||||+++|+|.+++....
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~  109 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNK  109 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTC
T ss_pred             eEEEEecCCCCcHHHHHhccC
Confidence            899999999999999987644

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.41  E-value=4.6e-13  Score=107.20  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=75.1

Q ss_pred             hcCccccceeccCCceeEEEEE------cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC---CCcccceeeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAE------LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIVKFYGFC  195 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~------~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~  195 (226)
                      .++|...+.||+|+||.||+|.      ..++..||+|.+...       ...++..|+.++..++   |+|++++++++
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~  136 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSAH  136 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEE
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhheee
Confidence            3567888899999999999994      457889999998651       2467888888888887   99999999999


Q ss_pred             EeCCeEEEEEEccCCCChhhhccC
Q 040605          196 SHARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ...+..++||||+++|+|.++|+.
T Consensus       137 ~~~~~~~lv~e~~~~g~L~~~l~~  160 (365)
T 3e7e_A          137 LFQNGSVLVGELYSYGTLLNAINL  160 (365)
T ss_dssp             ECSSCEEEEECCCCSCBHHHHHHH
T ss_pred             ecCCCcEEEEeccCCCcHHHHHHH
Confidence            999999999999999999999974

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.41  E-value=8.2e-13  Score=102.71  Aligned_cols=87  Identities=33%  Similarity=0.525  Sum_probs=71.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc--CCCCcccceeeEEEeC----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK--IRHRNIVKFYGFCSHA----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~--l~h~nlv~l~g~~~~~----~  199 (226)
                      ++|...+.||+|+||.||++.. ++..||||.+..    .   ....+..|.+++..  ++||||+++++++...    .
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~----~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~   79 (301)
T 3q4u_A            8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS----R---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST   79 (301)
T ss_dssp             GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG----G---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred             CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc----c---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence            5688888999999999999987 789999999854    1   34566677777665  7999999999997542    4


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++||||+++|+|.++++..
T Consensus        80 ~~~lv~e~~~~g~L~~~l~~~  100 (301)
T 3q4u_A           80 QLWLITHYHEMGSLYDYLQLT  100 (301)
T ss_dssp             EEEEEECCCTTCBHHHHHTTC
T ss_pred             eeEEehhhccCCCHHHHHhhc
Confidence            578999999999999999654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.40  E-value=6.5e-13  Score=102.44  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=74.8

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++...    .+..||+|.+...   ......+.+.+|+.++.+++||||+++++++. .+..
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~   90 (281)
T 1mp8_A           15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC---TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   90 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT---TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence            45777889999999999999764    2457999998642   22234578999999999999999999999974 5678


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~  109 (281)
T 1mp8_A           91 WIIMELCTLGELRSFLQVR  109 (281)
T ss_dssp             EEEEECCTTEEHHHHHHHT
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            9999999999999999754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.40  E-value=7.9e-13  Score=105.60  Aligned_cols=103  Identities=21%  Similarity=0.314  Sum_probs=83.7

Q ss_pred             cHHHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCC-------chhhHHHHHHHHHHHhcCCCCccc
Q 040605          117 IYVEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD-------QIADQKEFLAEIEALTKIRHRNIV  189 (226)
Q Consensus       117 ~~~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~-------~~~~~~~~~~e~~~l~~l~h~nlv  189 (226)
                      ...++....++|...+.||+|+||.||++...+|..||||++.......       +....+.+.+|+.++.+++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            3467777889999999999999999999988889999999986422211       111247899999999999999999


Q ss_pred             ceeeEEEeC-----CeEEEEEEccCCCChhhhccCC
Q 040605          190 KFYGFCSHA-----RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       190 ~l~g~~~~~-----~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++++...     ...++||||++ |+|.+++...
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~  127 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ  127 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc
Confidence            999998542     36799999998 7899988754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.40  E-value=4.2e-13  Score=114.77  Aligned_cols=87  Identities=29%  Similarity=0.414  Sum_probs=71.7

Q ss_pred             ceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          132 YCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      +.||+|+||.||+|.+.   .+..||||.++...  .+....+.|.+|+.+|.+++|||||++++++. .+..++|||||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG--GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEcc
Confidence            47999999999999553   46789999997521  22234678999999999999999999999996 45588999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|+|.++|+..+
T Consensus       452 ~~g~L~~~l~~~~  464 (635)
T 4fl3_A          452 ELGPLNKYLQQNR  464 (635)
T ss_dssp             TTEEHHHHHHHCT
T ss_pred             CCCCHHHHHhhCC
Confidence            9999999997543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.40  E-value=5.4e-14  Score=112.29  Aligned_cols=95  Identities=20%  Similarity=0.316  Sum_probs=77.8

Q ss_pred             cCccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||++..    .++..||||.++...........+.+.+|+.++.++ +|+||+++.+++...+.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5688889999999999999976    378999999986411101111235677899999999 69999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.++|...
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~  153 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQR  153 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHH
T ss_pred             EEEEeecCCCCCHHHHHHHc
Confidence            99999999999999998754

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.40  E-value=8.8e-13  Score=102.48  Aligned_cols=92  Identities=25%  Similarity=0.433  Sum_probs=74.3

Q ss_pred             cCccccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~  200 (226)
                      ..|...+.||+|+||.||+|...+    ...+|+|.+...   ......+.+.+|+.++++++||||+++++++.. .+.
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI---TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS  101 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC---CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC---CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence            346677899999999999997632    235899998641   223356789999999999999999999998754 567


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.++++..
T Consensus       102 ~~~v~e~~~~~~L~~~l~~~  121 (298)
T 3f66_A          102 PLVVLPYMKHGDLRNFIRNE  121 (298)
T ss_dssp             CEEEEECCTTCBHHHHHHCT
T ss_pred             eEEEEeCCCCCCHHHHHHhc
Confidence            89999999999999999753

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.39  E-value=5e-13  Score=103.41  Aligned_cols=93  Identities=24%  Similarity=0.374  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+......  ....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc--hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            56888899999999999999765 7899999998642111  12457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      +||+++++|.+++...
T Consensus       100 ~e~~~~~~L~~~l~~~  115 (287)
T 2wei_A          100 GELYTGGELFDEIIKR  115 (287)
T ss_dssp             ECCCCSCBHHHHHHHH
T ss_pred             EEccCCCCHHHHHHhc
Confidence            9999999999988643

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.39  E-value=2.7e-13  Score=104.51  Aligned_cols=87  Identities=29%  Similarity=0.517  Sum_probs=73.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-------  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-------  197 (226)
                      .+|...+.||+|+||.||++... ++..||+|.+...        ...+.+|+.++.+++||||+++.+++..       
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN--------NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET   82 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC--------SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc--------cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccc
Confidence            45788889999999999999775 7899999998651        1357789999999999999999998854       


Q ss_pred             ---------CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ---------ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ---------~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                               ....++||||+++|+|.+++...
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  114 (284)
T 2a19_B           83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR  114 (284)
T ss_dssp             ------CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred             ccccccccCcceEEEEEeccCCCCHHHHHhhc
Confidence                     34578999999999999999643

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.39  E-value=5.9e-13  Score=105.03  Aligned_cols=91  Identities=22%  Similarity=0.427  Sum_probs=70.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||+|... ++.    .||+|.+....   .....+.|.+|+.++.+++||||++++++|.... 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   90 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc---CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence            45778889999999999999753 444    36888875422   1224578999999999999999999999998654 


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~  110 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVREH  110 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHS
T ss_pred             eEEEEEecCCCcHHHHHHhc
Confidence            78999999999999999764

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=107.00  Aligned_cols=94  Identities=30%  Similarity=0.473  Sum_probs=79.1

Q ss_pred             HHHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe--
Q 040605          122 IRAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH--  197 (226)
Q Consensus       122 ~~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~--  197 (226)
                      ....++|...+.||+|+||.||++.. .+|..||+|.+.....     ....+.+|+.++.++ +||||+++++++..  
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   94 (326)
T 2x7f_A           20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKN   94 (326)
T ss_dssp             CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC
T ss_pred             cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-----cHHHHHHHHHHHHhccCCCCeeeeeeEEeecc
Confidence            34457788889999999999999976 4789999999865211     246789999999998 89999999999976  


Q ss_pred             ----CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ----ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ----~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                          .+..++||||+++|+|.+++...
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~  121 (326)
T 2x7f_A           95 PPGMDDQLWLVMEFCGAGSVTDLIKNT  121 (326)
T ss_dssp             --CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred             CccccceEEEEEEcCCCCcHHHHHHhc
Confidence                46789999999999999999754

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.38  E-value=9.9e-13  Score=104.42  Aligned_cols=93  Identities=18%  Similarity=0.282  Sum_probs=78.8

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC--CcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH--RNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h--~nlv~l~g~~~~~~~~~l  203 (226)
                      ..|...+.||+|+||.||++...++..||||++....  ......+.+.+|+.++.+++|  +||+++++++...+..++
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccc--cchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            4577788999999999999988889999999987521  223345789999999999976  999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||| +.+|+|.+++....
T Consensus        87 v~e-~~~~~L~~~l~~~~  103 (343)
T 3dbq_A           87 VME-CGNIDLNSWLKKKK  103 (343)
T ss_dssp             EEC-CCSEEHHHHHHHSC
T ss_pred             EEe-CCCCCHHHHHHhcC
Confidence            999 46789999997654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.38  E-value=9.3e-13  Score=102.09  Aligned_cols=93  Identities=27%  Similarity=0.380  Sum_probs=74.0

Q ss_pred             cCccccc-eeccCCceeEEEEEc---CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKY-CIGNGGHGSVYKAEL---PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~-~lg~g~~g~v~~~~~---~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      .+|.... .||+|+||.||++..   ..+..||||.++...  .+....+.+.+|+.++..++||||+++++++ ..+..
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~   92 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW   92 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc--cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence            3455555 899999999999954   246789999997521  1222457899999999999999999999999 56778


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++||||+++|+|.+++...+
T Consensus        93 ~lv~e~~~~~~L~~~l~~~~  112 (291)
T 1xbb_A           93 MLVMEMAELGPLNKYLQQNR  112 (291)
T ss_dssp             EEEEECCTTEEHHHHHHHCT
T ss_pred             EEEEEeCCCCCHHHHHHhCc
Confidence            99999999999999997543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=106.70  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCc----hhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQ----IADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~----~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .++|...+.||+|+||.||++.. .++..||||.+........    ......+.+|+.++.+++||||+++++++...+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            35688889999999999999975 5788999999975221110    012346788999999999999999999999999


Q ss_pred             eEEEEEEccCCC-ChhhhccCCc
Q 040605          200 HSFLVYEYLERG-SLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g-~L~~~l~~~~  221 (226)
                      ..++||||+..| +|.+++....
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~  125 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHP  125 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCC
T ss_pred             EEEEEEEeCCCCccHHHHHHhcC
Confidence            999999999877 9999987654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.38  E-value=1.1e-12  Score=101.82  Aligned_cols=90  Identities=20%  Similarity=0.320  Sum_probs=73.4

Q ss_pred             ccccceeccCCceeEEEEEcC-CC---CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE-E
Q 040605          128 FDAKYCIGNGGHGSVYKAELP-SG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS-F  202 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~-~g---~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~-~  202 (226)
                      |...+.||+|+||.||+|... ++   ..+|+|.+...   ......+.+.+|+.++.+++||||+++++++...+.. +
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI---TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC---CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeecccc---ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            445578999999999999753 22   37999998641   2233567899999999999999999999999776554 9


Q ss_pred             EEEEccCCCChhhhccCC
Q 040605          203 LVYEYLERGSLATNLSND  220 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~  220 (226)
                      +++||+++|+|.++++..
T Consensus       100 ~v~e~~~~~~L~~~~~~~  117 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSP  117 (298)
T ss_dssp             EEECCCTTCBHHHHHHCT
T ss_pred             EEEecccCCCHHHHHhcc
Confidence            999999999999999763

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.38  E-value=1.1e-12  Score=101.95  Aligned_cols=92  Identities=29%  Similarity=0.441  Sum_probs=75.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||+|.+.....  .......+.+|+.++.+++||||+++++++...+..++|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE--TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCcc--chhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEE
Confidence            46778889999999999999765 789999999864211  111236788999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ |+|.+++...
T Consensus        81 ~e~~~-~~L~~~~~~~   95 (299)
T 2r3i_A           81 FEFLH-QDLKKFMDAS   95 (299)
T ss_dssp             EECCS-EEHHHHHHHT
T ss_pred             EEccc-CCHHHHHHhh
Confidence            99998 7999998754

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.38  E-value=1.5e-12  Score=100.80  Aligned_cols=90  Identities=29%  Similarity=0.412  Sum_probs=74.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||++...  ..+|+|.++...  ......+.|.+|+.++.+++|+||+++++++ ..+..++||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~   98 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTA--PTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT   98 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSS--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred             cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccC--CCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence            56888889999999999999764  359999987522  2233567899999999999999999999965 455689999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        99 e~~~~~~L~~~l~~~  113 (289)
T 3og7_A           99 QWCEGSSLYHHLHAS  113 (289)
T ss_dssp             ECCCEEEHHHHHTTC
T ss_pred             EecCCCcHHHHHhhc
Confidence            999999999999654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.37  E-value=1.3e-12  Score=107.03  Aligned_cols=93  Identities=24%  Similarity=0.368  Sum_probs=78.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      ++|...+.||+|+||.||++... ++..||||++...  .......+.+.+|+.++.+++|+||+++++++...     +
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRM--FEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECST--TTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCch--hcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            56888899999999999999764 6889999999752  22233567899999999999999999999999765     5


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++||||++ |+|.++++...
T Consensus       104 ~~~lv~e~~~-~~L~~~~~~~~  124 (432)
T 3n9x_A          104 ELYIVLEIAD-SDLKKLFKTPI  124 (432)
T ss_dssp             CEEEEEECCS-EEHHHHHHSSC
T ss_pred             eEEEEEecCC-cCHHHHHhccC
Confidence            7899999997 69999998654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.37  E-value=1.3e-12  Score=102.25  Aligned_cols=93  Identities=24%  Similarity=0.427  Sum_probs=72.2

Q ss_pred             HhcCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ..++|...+.||+|+||.||++...    .+..||+|.++...  ......+.+.+|+.++.+++||||+++++++...+
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  109 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDN--SSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS  109 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---C--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccc--cchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence            3456788889999999999999653    34489999986521  22234578999999999999999999999997654


Q ss_pred             -----eEEEEEEccCCCChhhhcc
Q 040605          200 -----HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 -----~~~lv~e~~~~g~L~~~l~  218 (226)
                           ..++|+||+++|+|.+++.
T Consensus       110 ~~~~~~~~~v~e~~~~~~L~~~l~  133 (313)
T 3brb_A          110 SQGIPKPMVILPFMKYGDLHTYLL  133 (313)
T ss_dssp             -----CEEEEEECCTTCBHHHHHH
T ss_pred             ccCCcccEEEEecccCCCHHHHHH
Confidence                 3599999999999999984

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.37  E-value=1.5e-12  Score=105.19  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=78.6

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC--CCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~~~~~l  203 (226)
                      ..|...+.||+|+||.||++...++..||||.+....  .+....+.+.+|+.++.+++  |+||+++++++...+..++
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEeccc--ccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            3478888999999999999988889999999986521  22335678999999999996  5999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||| +.+|+|.++|....
T Consensus       134 v~E-~~~~~L~~~l~~~~  150 (390)
T 2zmd_A          134 VME-CGNIDLNSWLKKKK  150 (390)
T ss_dssp             EEE-CCSEEHHHHHHHCS
T ss_pred             EEe-cCCCCHHHHHHhcC
Confidence            999 56799999987543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=101.13  Aligned_cols=90  Identities=28%  Similarity=0.414  Sum_probs=70.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEE--------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCS--------  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~--------  196 (226)
                      ++|...+.||+|+||.||++... ++..||+|++..    .+....+.+.+|+.++.+++||||+++++++.        
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVL----TDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEEC----CSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEec----CChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            46778889999999999999775 589999999865    12335678999999999999999999998873        


Q ss_pred             ------eCCeEEEEEEccCCCChhhhccCC
Q 040605          197 ------HARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       197 ------~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                            ..+..++||||++ |+|.+++...
T Consensus        87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~  115 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYME-TDLANVLEQG  115 (320)
T ss_dssp             ----CCSCSEEEEEEECCS-EEHHHHHTTC
T ss_pred             ccccccccCceeEEeeccC-CCHHHHhhcC
Confidence                  3467899999998 7999998753

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.36  E-value=2.5e-13  Score=107.06  Aligned_cols=91  Identities=22%  Similarity=0.353  Sum_probs=74.1

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... ++..||+|.+.......   ....+.+|+.++.+++||||+++++++...+..++|
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   78 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc---cchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEE
Confidence            45777889999999999999765 78999999986422111   122456899999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||++ |+|.+++...
T Consensus        79 ~e~~~-~~l~~~~~~~   93 (324)
T 3mtl_A           79 FEYLD-KDLKQYLDDC   93 (324)
T ss_dssp             EECCS-EEHHHHHHHT
T ss_pred             ecccc-cCHHHHHHhc
Confidence            99998 6999988754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.36  E-value=1e-12  Score=108.38  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=68.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      ++|...+.||+|+||.||++... ++..||||++...  ..+....+.+.+|+.+|.+++|+||+++++++...     .
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRV--FEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECST--TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechh--hcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            56888899999999999999754 7899999999652  22333567899999999999999999999999443     5


Q ss_pred             eEEEEEEccCCCChhhhccCCc
Q 040605          200 HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ..++||||+. |+|.++++...
T Consensus       131 ~~~lv~e~~~-~~L~~~~~~~~  151 (458)
T 3rp9_A          131 ELYVVLEIAD-SDFKKLFRTPV  151 (458)
T ss_dssp             CEEEEECCCS-EEHHHHHHSSC
T ss_pred             eEEEEEeccc-cchhhhcccCC
Confidence            6899999985 89999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=8.1e-13  Score=114.05  Aligned_cols=91  Identities=26%  Similarity=0.467  Sum_probs=73.8

Q ss_pred             cCccccceeccCCceeEEEEEcC--CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe---
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH---  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~---  200 (226)
                      ++|...+.||+|+||.||++...  +|..||||.+...   .+......|.+|+.++.+++||||+++++++...+.   
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~  156 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS---GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD  156 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS---CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc---CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence            56888889999999999999764  6899999998641   223345689999999999999999999999977554   


Q ss_pred             --EEEEEEccCCCChhhhccC
Q 040605          201 --SFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 --~~lv~e~~~~g~L~~~l~~  219 (226)
                        .+|||||+++|+|.+++..
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~  177 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ  177 (681)
T ss_dssp             EEEEEEEECCCCEECC----C
T ss_pred             ceeEEEEEeCCCCcHHHHHhC
Confidence              6999999999999988764

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.36  E-value=9.7e-13  Score=101.27  Aligned_cols=88  Identities=30%  Similarity=0.518  Sum_probs=74.2

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-CeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-RHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .|..||||.++..   .   ..+.+.+|+.++.+++||||+++++++... +..++|
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv   93 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND---A---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   93 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC---C-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred             hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch---h---HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence            5677888999999999999987 5889999998641   1   347899999999999999999999997654 478999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++...
T Consensus        94 ~e~~~~~~L~~~l~~~  109 (278)
T 1byg_A           94 TEYMAKGSLVDYLRSR  109 (278)
T ss_dssp             ECCCTTEEHHHHHHHH
T ss_pred             EecCCCCCHHHHHHhc
Confidence            9999999999998753

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.36  E-value=3.2e-12  Score=101.15  Aligned_cols=90  Identities=30%  Similarity=0.478  Sum_probs=76.7

Q ss_pred             HHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc--CCCCcccceeeEEEeCC-
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK--IRHRNIVKFYGFCSHAR-  199 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~--l~h~nlv~l~g~~~~~~-  199 (226)
                      ...++|...+.||+|+||.||++.. +|..||||.+..    .   ....+.+|.+++..  ++||||+++++++...+ 
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~----~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~  110 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS----R---EERSWFREAEIYQTVMLRHENILGFIAADNKDNG  110 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG----G---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc----h---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence            3446788899999999999999987 589999999854    1   34678889988887  79999999999998775 


Q ss_pred             ---eEEEEEEccCCCChhhhccCC
Q 040605          200 ---HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ---~~~lv~e~~~~g~L~~~l~~~  220 (226)
                         ..++||||+++|+|.+++...
T Consensus       111 ~~~~~~lv~e~~~~g~L~~~l~~~  134 (342)
T 1b6c_B          111 TWTQLWLVSDYHEHGSLFDYLNRY  134 (342)
T ss_dssp             SCCCEEEEECCCTTCBHHHHHHHC
T ss_pred             ccceeEEEEeecCCCcHHHHHhcc
Confidence               789999999999999998653

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.36  E-value=8.6e-13  Score=103.97  Aligned_cols=91  Identities=23%  Similarity=0.385  Sum_probs=73.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCe----EEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEF----LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~----vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||++... ++..    ||+|.+.......   ..+.+.+|+.++.+++||||+++++++. .+.
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~   88 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQ---SFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS   88 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCS---CBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHH---HHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence            45777889999999999999754 4544    8888875422111   2356889999999999999999999886 456


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++|+||+++|+|.++++..
T Consensus        89 ~~~v~e~~~~~~L~~~l~~~  108 (325)
T 3kex_A           89 LQLVTQYLPLGSLLDHVRQH  108 (325)
T ss_dssp             EEEEEECCTTCBSHHHHHSS
T ss_pred             cEEEEEeCCCCCHHHHHHHc
Confidence            88999999999999999765

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.35  E-value=3e-12  Score=102.15  Aligned_cols=91  Identities=26%  Similarity=0.322  Sum_probs=78.5

Q ss_pred             HhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-----CCcccceeeEEEe
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-----HRNIVKFYGFCSH  197 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-----h~nlv~l~g~~~~  197 (226)
                      ..++|...+.||+|+||.||++.. .++..||||.+..     .....+.+..|+.++..++     ||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-----~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~  107 (360)
T 3llt_A           33 LNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN-----IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY  107 (360)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-----CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE
T ss_pred             ecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc-----chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE
Confidence            356788999999999999999976 4788999999864     1224567888999999886     9999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+ +|+|.+++...
T Consensus       108 ~~~~~lv~e~~-~~~L~~~~~~~  129 (360)
T 3llt_A          108 YDHMCLIFEPL-GPSLYEIITRN  129 (360)
T ss_dssp             TTEEEEEECCC-CCBHHHHHHHT
T ss_pred             CCeeEEEEcCC-CCCHHHHHHhc
Confidence            99999999999 89999998754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.35  E-value=3.2e-12  Score=100.07  Aligned_cols=92  Identities=25%  Similarity=0.311  Sum_probs=74.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||+||+|... +|..||||++....  ........+..|+..+.++ +|+||+++++++...+..++
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l  134 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPF--RGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL  134 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSC--CSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccc--cChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence            45888889999999999999775 79999999986522  2222345566677666655 99999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+ +|+|.+++...
T Consensus       135 v~e~~-~~~L~~~~~~~  150 (311)
T 3p1a_A          135 QTELC-GPSLQQHCEAW  150 (311)
T ss_dssp             EEECC-CCBHHHHHHHH
T ss_pred             EEecc-CCCHHHHHHhc
Confidence            99999 67999988653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.35  E-value=3.3e-13  Score=108.57  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHH---HHHhcCCCCccccee-------e
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEI---EALTKIRHRNIVKFY-------G  193 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~---~~l~~l~h~nlv~l~-------g  193 (226)
                      .++|...+.||+|+||.||++.. .+|..||||++... ........+.+.+|+   ..+++++|||||+++       +
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~  150 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT-ERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  150 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEEC-C-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeec-cccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence            35677788999999999999986 47999999999742 112223467899999   566677899999998       5


Q ss_pred             EEEeCC-----------------eEEEEEEccCCCChhhhccCC
Q 040605          194 FCSHAR-----------------HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       194 ~~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++..++                 ..+++|||+ +|+|.+++...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~  193 (377)
T 3byv_A          151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL  193 (377)
T ss_dssp             EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred             hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence            555443                 278999999 58999999754

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.35  E-value=1.4e-12  Score=102.91  Aligned_cols=87  Identities=20%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++.. .+|..||||.+.....      .+.+.+|+.++.++ +|+||+++++++...+..++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   82 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM   82 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence            5688888999999999999975 5789999999865211      23588999999999 99999999999999999999


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      ||||+ +|+|.+++..
T Consensus        83 v~e~~-~~~L~~~~~~   97 (330)
T 2izr_A           83 VLELL-GPSLEDLFDL   97 (330)
T ss_dssp             EEECC-CCBHHHHHHH
T ss_pred             EEEeC-CCCHHHHHHH
Confidence            99999 8999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.34  E-value=2.6e-12  Score=101.48  Aligned_cols=89  Identities=28%  Similarity=0.458  Sum_probs=73.5

Q ss_pred             HhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC--CCCcccceeeEEEeC---
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI--RHRNIVKFYGFCSHA---  198 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l--~h~nlv~l~g~~~~~---  198 (226)
                      ..++|...+.||+|+||.||++... +..||||.+..    .   ....+..|.+++...  +||||+++++++...   
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~----~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~  106 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFT----T---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS  106 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEG----G---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEec----c---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence            3467888999999999999999874 89999999854    1   234566666666654  999999999999877   


Q ss_pred             -CeEEEEEEccCCCChhhhccCC
Q 040605          199 -RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                       ...++||||+++|+|.++++..
T Consensus       107 ~~~~~lv~e~~~~g~L~~~l~~~  129 (337)
T 3mdy_A          107 WTQLYLITDYHENGSLYDYLKST  129 (337)
T ss_dssp             GCEEEEEECCCTTCBHHHHHHHC
T ss_pred             CCceEEEEeccCCCcHHHHhhcc
Confidence             7889999999999999999653

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.34  E-value=2.1e-12  Score=99.50  Aligned_cols=91  Identities=22%  Similarity=0.399  Sum_probs=74.6

Q ss_pred             cCccccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++....    +..||+|.+...   ......+.|.+|+.++.+++||||+++++++.. +..
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~   87 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKD---CTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT   87 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTT---SCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccc---cCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence            567888899999999999997532    336999998652   122346789999999999999999999999764 456


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        88 ~~v~e~~~~~~L~~~l~~~  106 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERN  106 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            8999999999999999753

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.34  E-value=1.3e-12  Score=101.12  Aligned_cols=93  Identities=28%  Similarity=0.445  Sum_probs=68.3

Q ss_pred             cCccccceeccCCceeEEEEEcC--CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||++...  ++.  .||+|.++... .......+.+.+|+.++.+++||||+++++++...+ .
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCc-cCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            45778889999999999999753  333  68999986521 122234678999999999999999999999997655 8


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++|+||+++|+|.+++...
T Consensus        96 ~~v~e~~~~~~L~~~l~~~  114 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKH  114 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             eeeEecccCCCHHHHHHhc
Confidence            8999999999999998753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.34  E-value=4.6e-12  Score=99.81  Aligned_cols=87  Identities=22%  Similarity=0.338  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEe--CCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSH--ARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~--~~~~  201 (226)
                      ++|...+.||+|+||.||++.. .++..||+|.+..    .   ..+.+.+|+.++.+++ ||||+++.+++..  ....
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~  108 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP----V---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  108 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS----C---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc----c---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence            5678888999999999999965 5789999999864    1   2467999999999997 9999999999987  5678


Q ss_pred             EEEEEccCCCChhhhccC
Q 040605          202 FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~  219 (226)
                      ++||||+++++|.++++.
T Consensus       109 ~lv~e~~~~~~l~~~~~~  126 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLYQT  126 (330)
T ss_dssp             EEEEECCCCCCHHHHGGG
T ss_pred             EEEEeccCchhHHHHHHh
Confidence            999999999999998764

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.33  E-value=9.9e-13  Score=105.97  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             HHhcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC---
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA---  198 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~---  198 (226)
                      ...++|...+.||+|+||.||++.. .+|..||+|++....        ....+|+.+|+.++||||+++++++...   
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--------~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   75 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--------RYKNRELDIMKVLDHVNIIKLVDYFYTTGDE   75 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHTTCCCTTBCCEEEEEEEC---
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--------chHHHHHHHHHHcCCCCccchhheeeecCcc
Confidence            3456788889999999999999965 589999999986521        1233799999999999999999998543   


Q ss_pred             -----------------------------------CeEEEEEEccCCCChhhhccC
Q 040605          199 -----------------------------------RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 -----------------------------------~~~~lv~e~~~~g~L~~~l~~  219 (226)
                                                         ...++||||++ |+|.+.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~  130 (383)
T 3eb0_A           76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS  130 (383)
T ss_dssp             ----------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence                                               23789999998 688877753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.33  E-value=2.4e-12  Score=102.29  Aligned_cols=96  Identities=22%  Similarity=0.397  Sum_probs=72.6

Q ss_pred             HhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCC-chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGD-QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~-~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ..++|...+.||+|+||.||++... +|..||||.+....... .....+.+.+|+.++..++||||+++++++...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            3467888899999999999999875 68999999986421111 011124688999999999999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++ +|.+++...
T Consensus        88 ~lv~e~~~~-~l~~~~~~~  105 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDN  105 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTC
T ss_pred             EEEEEcCCC-CHHHHHHhc
Confidence            999999984 899988754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.33  E-value=8.3e-13  Score=113.70  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=78.9

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~  202 (226)
                      .++|...+.||+|+||.||++... ++..||||+++... .......+.+..|..++..+ +|+||+++.+++.+.+..+
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~-~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDV-VIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHH-HHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccc-cccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            357888899999999999999765 68899999986410 00111346788999999988 7999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +||||+++|+|.++|+..+
T Consensus       419 lV~E~~~gg~L~~~l~~~~  437 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVG  437 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHS
T ss_pred             EEEeCcCCCcHHHHHHhcC
Confidence            9999999999999997543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.33  E-value=1.7e-13  Score=108.52  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=70.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCC----CchhhHHHHHHHHHHHhcCC---------CCccccee
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPG----DQIADQKEFLAEIEALTKIR---------HRNIVKFY  192 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~----~~~~~~~~~~~e~~~l~~l~---------h~nlv~l~  192 (226)
                      ++|...+.||+|+||.||++.. +|..||||++......    ......+.+.+|+.++++++         |+|++++.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            4577778999999999999987 7899999999752211    11223478889999988875         77777776


Q ss_pred             eEEE-----------------e-------------CCeEEEEEEccCCCChhhhccC
Q 040605          193 GFCS-----------------H-------------ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       193 g~~~-----------------~-------------~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      +.+.                 .             .+..++||||+++|++.+.+.+
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~  155 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT  155 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh
Confidence            6542                 2             6789999999999987776644

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.33  E-value=2.4e-12  Score=104.36  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=70.0

Q ss_pred             cCcccc-ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHh-cCCCCcccceeeEEEe----C
Q 040605          126 NDFDAK-YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT-KIRHRNIVKFYGFCSH----A  198 (226)
Q Consensus       126 ~~~~~~-~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~-~l~h~nlv~l~g~~~~----~  198 (226)
                      ++|... +.||+|+||+||++... +|..||||.+..         ...+.+|+.++. ..+||||+++++++..    .
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~  131 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR  131 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCC
Confidence            345443 68999999999999764 789999999864         145778888874 4589999999999865    4


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..++||||+++|+|.++|+..
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~  153 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDR  153 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHh
Confidence            5689999999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=101.25  Aligned_cols=93  Identities=19%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEE--eCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCS--HARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~--~~~~~~  202 (226)
                      ++|...+.||+|+||.||++... ++..+|+|.+..............+.+|+.++.+++|+||+++++++.  ..+..+
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence            57888899999999999999764 788999999864110001123578999999999999999999999984  345789


Q ss_pred             EEEEccCCCChhhhccC
Q 040605          203 LVYEYLERGSLATNLSN  219 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~  219 (226)
                      +||||+++| |.+++..
T Consensus        85 lv~e~~~~~-l~~~~~~  100 (305)
T 2wtk_C           85 MVMEYCVCG-MQEMLDS  100 (305)
T ss_dssp             EEEECCSEE-HHHHHHH
T ss_pred             EEehhccCC-HHHHHHh
Confidence            999999966 7777654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.32  E-value=2e-12  Score=103.71  Aligned_cols=91  Identities=21%  Similarity=0.343  Sum_probs=69.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      +.|...+.||+|+||.||++.. .+|..||||++....  ......+.+.+|+.++..++||||+++++++...+     
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            5678888999999999999976 479999999986521  22334578999999999999999999999997653     


Q ss_pred             -eEEEEEEccCCCChhhhccC
Q 040605          200 -HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~~  219 (226)
                       ..++||||+ +++|.++++.
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~  122 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKH  122 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH
T ss_pred             ceEEEEEecC-CCCHHHHHhc
Confidence             459999999 7899999875

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.32  E-value=4.3e-12  Score=100.08  Aligned_cols=91  Identities=22%  Similarity=0.430  Sum_probs=74.3

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCe----EEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEF----LAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~----vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||.||++... ++..    ||+|.+.....   ....+.+.+|+.++.+++||||+++++++.... 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   90 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS---CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence            56888889999999999999753 4543    57887754222   224678999999999999999999999998654 


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.++++..
T Consensus        91 ~~~v~~~~~~g~L~~~l~~~  110 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVREH  110 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHHT
T ss_pred             ceEEEEecCCCcHHHHHHhc
Confidence            78999999999999999754

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.32  E-value=3.7e-12  Score=109.39  Aligned_cols=91  Identities=22%  Similarity=0.354  Sum_probs=74.7

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|...    .+..||+|.+...   ......+.|.+|+.++.+++||||+++++++. .+..
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC---TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST---TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc---CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            45677788999999999999763    2457999998642   12234578999999999999999999999984 5668


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++++..
T Consensus       466 ~lv~E~~~~g~L~~~l~~~  484 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVR  484 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            9999999999999999754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.31  E-value=6.8e-12  Score=101.23  Aligned_cols=92  Identities=27%  Similarity=0.442  Sum_probs=69.1

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCC--e
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHAR--H  200 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~--~  200 (226)
                      .++|...+.||+|+||.||++.. .+|..||||++...  .......+.+.+|+.++..+. ||||+++++++...+  .
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDA--FQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccc--ccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            46788889999999999999975 47899999998642  122335677889999999997 999999999997654  6


Q ss_pred             EEEEEEccCCCChhhhccC
Q 040605          201 SFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~  219 (226)
                      .++|||||+ |+|.++++.
T Consensus        86 ~~lv~e~~~-~~L~~~~~~  103 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVIRA  103 (388)
T ss_dssp             EEEEEECCS-EEHHHHHHH
T ss_pred             EEEEecccC-cCHHHHHHc
Confidence            899999998 799998875

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.31  E-value=6.2e-12  Score=99.14  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             Ccccc-ceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          127 DFDAK-YCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       127 ~~~~~-~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .|... +.||+|+||.||++... ++..||+|.+.....  .......+.+|+.++..+ +||||+++++++...+..++
T Consensus        29 ~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l  106 (327)
T 3lm5_A           29 FYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRR--GQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL  106 (327)
T ss_dssp             HEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEET--TEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             EEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhc--chHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence            34444 78999999999999765 789999999875221  112457899999999999 56999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+++|+|.+++...
T Consensus       107 v~e~~~~~~L~~~~~~~  123 (327)
T 3lm5_A          107 ILEYAAGGEIFSLCLPE  123 (327)
T ss_dssp             EEECCTTEEGGGGGSSC
T ss_pred             EEEecCCCcHHHHHHHh
Confidence            99999999999998653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.30  E-value=4.1e-12  Score=98.87  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=71.3

Q ss_pred             cCcccc-ceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHH-hcCCCCcccceeeEEEe----C
Q 040605          126 NDFDAK-YCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEAL-TKIRHRNIVKFYGFCSH----A  198 (226)
Q Consensus       126 ~~~~~~-~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l-~~l~h~nlv~l~g~~~~----~  198 (226)
                      ++|... +.||+|+||.||++.. .++..||+|.+..         ...+.+|+.++ ...+||||+++++++..    .
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   87 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   87 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence            345544 6799999999999976 4789999999864         24677888887 55699999999999976    5


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++||||+++|+|.+++...
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~  109 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRIQDR  109 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHC
T ss_pred             ceEEEEEeecCCCcHHHHHHhc
Confidence            6789999999999999999754

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.30  E-value=8.9e-12  Score=99.99  Aligned_cols=91  Identities=20%  Similarity=0.344  Sum_probs=75.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      ++|...+.||+|+||.||++.. .++..||||++....  ......+.+.+|+.++..++||||+++++++...+     
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc--CChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence            5688889999999999999965 478899999997521  22334577899999999999999999999997654     


Q ss_pred             -eEEEEEEccCCCChhhhccC
Q 040605          200 -HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~~  219 (226)
                       ..++||||++ |+|.+++..
T Consensus       103 ~~~~lv~e~~~-~~l~~~~~~  122 (371)
T 2xrw_A          103 QDVYIVMELMD-ANLCQVIQM  122 (371)
T ss_dssp             CEEEEEEECCS-EEHHHHHHS
T ss_pred             cceEEEEEcCC-CCHHHHHhh
Confidence             7899999998 678887753

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.30  E-value=1.1e-12  Score=111.92  Aligned_cols=93  Identities=25%  Similarity=0.358  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe------C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH------A  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~------~  198 (226)
                      ++|...+.||+|+||.||++.. .+|..||||.+...   ......+.+.+|+.++.+++||||+++++++..      .
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~---~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE---LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC---CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc---CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            5688889999999999999976 47899999998652   223346789999999999999999999998755      5


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..++||||+++|+|.+++....
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~  113 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFE  113 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcc
Confidence            67899999999999999998643

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.30  E-value=7.8e-12  Score=96.63  Aligned_cols=91  Identities=21%  Similarity=0.370  Sum_probs=71.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|.+....  ......+.+..+...+..++||||+++++++...+..++|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV--NSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC-----CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeeccc--CcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            5678888999999999999976 578999999996521  1112233444555568888999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||++ |+|.+++..
T Consensus        85 ~e~~~-~~l~~~l~~   98 (290)
T 3fme_A           85 MELMD-TSLDKFYKQ   98 (290)
T ss_dssp             EECCS-EEHHHHHHH
T ss_pred             Eehhc-cchHHHHHH
Confidence            99998 688887753

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.29  E-value=7.7e-12  Score=99.46  Aligned_cols=92  Identities=29%  Similarity=0.447  Sum_probs=74.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|++.......  .....+.+|+.++..++||||+++++++...      
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--GFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS--SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc--cchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            4678888999999999999976 578999999986522211  2346788999999999999999999999773      


Q ss_pred             --CeEEEEEEccCCCChhhhccCC
Q 040605          199 --RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 --~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                        +..++||||++ |+|.+.+...
T Consensus        95 ~~~~~~lv~e~~~-~~l~~~l~~~  117 (351)
T 3mi9_A           95 CKGSIYLVFDFCE-HDLAGLLSNV  117 (351)
T ss_dssp             --CEEEEEEECCS-EEHHHHHHCT
T ss_pred             CCceEEEEEeccC-CCHHHHHhhc
Confidence              46899999998 5788777653

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.28  E-value=6.2e-12  Score=103.01  Aligned_cols=86  Identities=23%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             ccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEE
Q 040605          128 FDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +...+.||+|+||+||.+...+|..||||++..    .   ..+.+.+|+.++.++ +||||+++++++...+..++|||
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~----~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E   89 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLI----D---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE   89 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEG----G---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcH----H---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence            445678999999999876666899999999864    1   245688999999876 89999999999999999999999


Q ss_pred             ccCCCChhhhccCCc
Q 040605          207 YLERGSLATNLSNDA  221 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~  221 (226)
                      |++ |+|.+++....
T Consensus        90 ~~~-gsL~~~l~~~~  103 (434)
T 2rio_A           90 LCN-LNLQDLVESKN  103 (434)
T ss_dssp             CCS-EEHHHHHHTC-
T ss_pred             cCC-CCHHHHHhccC
Confidence            996 79999998653

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.28  E-value=8.4e-12  Score=99.22  Aligned_cols=90  Identities=27%  Similarity=0.436  Sum_probs=75.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      ++|...+.||+|+||.||++... +|..||||.+...   ........+.+|+.++.+++||||+++++++...     .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   87 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF---DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN   87 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred             cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc---ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence            56888889999999999999764 7889999999641   2223456789999999999999999999988654     6


Q ss_pred             eEEEEEEccCCCChhhhccC
Q 040605          200 HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ..++|+||++ |+|.+++..
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~  106 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVIST  106 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHH
T ss_pred             eEEEEEeccC-ccHHHHHhh
Confidence            7899999998 799998764

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.28  E-value=9.2e-12  Score=99.90  Aligned_cols=91  Identities=24%  Similarity=0.371  Sum_probs=75.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE---
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS---  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~---  201 (226)
                      ++|...+.||+|+||.||++.. .+|..||||++....  ......+.+.+|+.++..++||||+++++++...+..   
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc--cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            5677888999999999999975 478999999997522  2223457899999999999999999999999876654   


Q ss_pred             ---EEEEEccCCCChhhhccC
Q 040605          202 ---FLVYEYLERGSLATNLSN  219 (226)
Q Consensus       202 ---~lv~e~~~~g~L~~~l~~  219 (226)
                         ++||||++ |+|.+++..
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~  139 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM  139 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS
T ss_pred             eeEEEEEcccc-ccHHHHhhc
Confidence               99999998 789888753

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.28  E-value=8.3e-13  Score=103.55  Aligned_cols=93  Identities=22%  Similarity=0.335  Sum_probs=77.2

Q ss_pred             hcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .++|...+.||+|+||.||++....  .+|+|.+......  ....+.+.+|+.++.+++|+||+++++++...+..+++
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv  107 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDN--EDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII  107 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCC--CCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCC--HHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence            3567888899999999999998743  5999998652211  11235688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++|+|.++++..+
T Consensus       108 ~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B          108 TSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             CBCCCSEEHHHHTTSSC
T ss_pred             eecccCCcHHHHHHhcC
Confidence            99999999999998654

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.28  E-value=9.8e-12  Score=98.97  Aligned_cols=91  Identities=24%  Similarity=0.367  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH----  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~----  200 (226)
                      .+|...+.||+|+||.||++... +|..||||.+....  ......+.+.+|+.++..++||||+++++++...+.    
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            46778889999999999999764 78999999996521  222345788999999999999999999999977654    


Q ss_pred             --EEEEEEccCCCChhhhccC
Q 040605          201 --SFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       201 --~~lv~e~~~~g~L~~~l~~  219 (226)
                        .++||||++ |+|.+++..
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~  121 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL  121 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS
T ss_pred             eeEEEEecccc-CCHHHHhcC
Confidence              499999998 799888753

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.28  E-value=6.9e-12  Score=98.15  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC--CCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~~~~~l  203 (226)
                      .+|...+.||+|+||.||++...++..||||.+....  ........+.+|+.++.+++  |+||+++++++...+..++
T Consensus        28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l  105 (313)
T 3cek_A           28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  105 (313)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred             ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccc--ccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence            5578888999999999999988889999999986521  22335678999999999997  5999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||| +.+|+|.+++....
T Consensus       106 v~e-~~~~~L~~~l~~~~  122 (313)
T 3cek_A          106 VME-CGNIDLNSWLKKKK  122 (313)
T ss_dssp             EEC-CCSEEHHHHHHHCS
T ss_pred             EEe-cCCCcHHHHHHhcC
Confidence            999 56799999987543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.27  E-value=5.2e-12  Score=99.59  Aligned_cols=89  Identities=26%  Similarity=0.388  Sum_probs=73.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEe------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSH------  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~------  197 (226)
                      .+|...+.||+|+||.||++.. .++..||+|++..    ......+.+.+|+.++.++. ||||+++++++..      
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~  103 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLS----NEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD  103 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEE----SSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecC----CchHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence            4577888999999999999975 4789999999854    12234578999999999996 9999999999942      


Q ss_pred             --CCeEEEEEEccCCCChhhhccC
Q 040605          198 --ARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       198 --~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                        ....++++||++ |+|.+++..
T Consensus       104 ~~~~~~~lv~e~~~-g~L~~~l~~  126 (337)
T 3ll6_A          104 TGQAEFLLLTELCK-GQLVEFLKK  126 (337)
T ss_dssp             TSSEEEEEEEECCS-EEHHHHHHH
T ss_pred             cCCceEEEEEEecC-CCHHHHHHH
Confidence              345789999996 899998864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=96.41  Aligned_cols=96  Identities=29%  Similarity=0.476  Sum_probs=72.8

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCC-CchhhHHHHHHHHHHHhcC---CCCcccceeeEEEeCC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPG-DQIADQKEFLAEIEALTKI---RHRNIVKFYGFCSHAR  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~-~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~~~~  199 (226)
                      .++|...+.||+|+||.||++.. .++..||+|.+...... ........+.+|+.++..+   +||||+++++++....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            46788899999999999999976 47899999998632111 1111235677777777666   4999999999997755


Q ss_pred             -----eEEEEEEccCCCChhhhccCCc
Q 040605          200 -----HSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       200 -----~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                           ..+++|||++ |+|.+++....
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~  113 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYLDKAP  113 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred             CCCceeEEEEehhhh-cCHHHHHhhcc
Confidence                 5789999997 79999987654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.27  E-value=1.1e-11  Score=99.12  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=75.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----R  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----~  199 (226)
                      .+|...+.||+|+||.||++... ++..||+|++...   ......+.+.+|+.++.+++||||+++++++...     .
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  103 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF---EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK  103 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT---TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc---cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence            56888899999999999999754 7889999998641   2223457899999999999999999999999654     3


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++|+||++ |+|.+++...
T Consensus       104 ~~~iv~e~~~-~~L~~~l~~~  123 (364)
T 3qyz_A          104 DVYIVQDLME-TDLYKLLKTQ  123 (364)
T ss_dssp             CEEEEEECCS-EEHHHHHHHC
T ss_pred             eEEEEEcccC-cCHHHHHHhC
Confidence            6899999998 6999988643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.27  E-value=5.4e-12  Score=99.68  Aligned_cols=87  Identities=31%  Similarity=0.431  Sum_probs=68.5

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHH--HhcCCCCcccceeeEEEe-----C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEA--LTKIRHRNIVKFYGFCSH-----A  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~--l~~l~h~nlv~l~g~~~~-----~  198 (226)
                      ++|...+.||+|+||.||++.. ++..||||++..    .   ....+..|.++  +..++|+||+++++.+..     .
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~----~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~   84 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSF----A---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR   84 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEG----G---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeec----c---chhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence            5678888999999999999976 789999999864    1   23455555555  445899999999986643     2


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++||||+++|+|.+++...
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~  106 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLH  106 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHC
T ss_pred             ceEEEEEecCCCCcHHHHHhhc
Confidence            3568999999999999999654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.27  E-value=6.6e-12  Score=103.66  Aligned_cols=91  Identities=21%  Similarity=0.324  Sum_probs=73.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      ++|...+.||+|+||.||++.. .++..||||++...  .......+.+.+|+.++..++||||+++++++...      
T Consensus        62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESG--GGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcc--ccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            5688889999999999999965 47899999999652  12223467889999999999999999999999654      


Q ss_pred             CeEEEEEEccCCCChhhhccC
Q 040605          199 RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ...++||||+++ +|.+.+..
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~  159 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQM  159 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS
T ss_pred             CeEEEEEeCCCC-CHHHHHhh
Confidence            457999999985 57766653

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.27  E-value=1.2e-11  Score=97.42  Aligned_cols=89  Identities=27%  Similarity=0.414  Sum_probs=72.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHH-HHhcCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIE-ALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~-~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++... +|..||||.+....   .......+..|.. +++.++||||+++++++...+..++
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV---DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc---CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            56777889999999999999774 78999999997521   1223456666766 6777899999999999999999999


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      ||||++ |+|.+++.
T Consensus        99 v~e~~~-~~l~~~~~  112 (327)
T 3aln_A           99 CMELMS-TSFDKFYK  112 (327)
T ss_dssp             EECCCS-EEHHHHHH
T ss_pred             EEeecC-CChHHHHH
Confidence            999998 58888775

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.26  E-value=7.7e-12  Score=100.24  Aligned_cols=91  Identities=24%  Similarity=0.377  Sum_probs=67.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      ++|...+.||+|+||.||++.. .+|..||||++....  ......+.+.+|+.++..++||||+++++++...      
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            5688888999999999999965 578999999986521  2233457889999999999999999999998654      


Q ss_pred             CeEEEEEEccCCCChhhhccC
Q 040605          199 RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ...++++||+ +++|.++++.
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~  126 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC  126 (367)
T ss_dssp             CCCEEEEECC-CEECC-----
T ss_pred             CeEEEEeccc-CCCHHHHHhc
Confidence            5679999999 6899998875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=100.56  Aligned_cols=81  Identities=23%  Similarity=0.353  Sum_probs=63.0

Q ss_pred             cceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSFLVY  205 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~lv~  205 (226)
                      ...||+|+||.||++...   ++..||+|.+.. ..     ....+.+|+.++.+++||||+++++++..  ....++||
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~-~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEG-TG-----ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSS-SS-----CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECC-CC-----CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence            447999999999999864   578999999864 11     12578899999999999999999999955  67899999


Q ss_pred             EccCCCChhhhcc
Q 040605          206 EYLERGSLATNLS  218 (226)
Q Consensus       206 e~~~~g~L~~~l~  218 (226)
                      ||++ |+|.+++.
T Consensus       100 e~~~-~~l~~~~~  111 (405)
T 3rgf_A          100 DYAE-HDLWHIIK  111 (405)
T ss_dssp             ECCS-EEHHHHHH
T ss_pred             eCCC-CCHHHHHH
Confidence            9997 68888876

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.25  E-value=1.5e-11  Score=95.39  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=75.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|.+....      ....+.+|+..+..+ +|+|++++++++......++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l   83 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS------DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   83 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT------TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC------ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence            4688888999999999999975 588999999986521      124588899999999 79999999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+ +|+|.++++..
T Consensus        84 v~e~~-~~~L~~~l~~~   99 (298)
T 1csn_A           84 VIDLL-GPSLEDLLDLC   99 (298)
T ss_dssp             EEECC-CCBHHHHHHHT
T ss_pred             EEEec-CCCHHHHHHHh
Confidence            99999 89999999753

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.25  E-value=1.8e-11  Score=97.59  Aligned_cols=93  Identities=20%  Similarity=0.256  Sum_probs=62.9

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      .+.....++|...+.||+|+||.||++... +|..||||++.....     ....+..|+..+..++||||+++++++..
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~l~~l~h~niv~~~~~~~~   90 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-----FRNRELQIMQDLAVLHHPNIVQLQSYFYT   90 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-----CCCHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-----ccHHHHHHHHHHHhcCCCCcccHHHhhhc
Confidence            344556688999999999999999999764 789999999865221     12457788888899999999999999966


Q ss_pred             CCe-------EEEEEEccCCCChhhhc
Q 040605          198 ARH-------SFLVYEYLERGSLATNL  217 (226)
Q Consensus       198 ~~~-------~~lv~e~~~~g~L~~~l  217 (226)
                      .+.       .++||||+++ +|.+.+
T Consensus        91 ~~~~~~~~~~~~lv~e~~~~-~l~~~~  116 (360)
T 3e3p_A           91 LGERDRRDIYLNVVMEYVPD-TLHRCC  116 (360)
T ss_dssp             ECSSCTTCEEEEEEEECCSC-BHHHHH
T ss_pred             cccccccceeEEEEeecccc-cHHHHH
Confidence            433       7899999985 555444

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.24  E-value=1.9e-11  Score=96.80  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             cCccc-cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CC
Q 040605          126 NDFDA-KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----AR  199 (226)
Q Consensus       126 ~~~~~-~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~  199 (226)
                      ++|.. .++||+|+||.||++... +|..||+|.+..    .    ..........+..++|+|++++++++..    ..
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~----~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~   99 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD----S----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKR   99 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES----S----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC----c----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence            56766 446999999999999765 789999999864    1    1122222233566799999999999876    34


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++||||+++|+|.+++...
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~  120 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQER  120 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC
T ss_pred             eEEEEEeccCCCCHHHHHHhc
Confidence            579999999999999999765

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=101.50  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=72.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||+||.....+++.||||++... .      ...+.+|+.++.++ +||||+++++++...+..++|
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~-~------~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv   96 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE-C------FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIA   96 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT-T------EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH-H------HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEE
Confidence            457778899999999966555558999999998641 1      12356899999998 899999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||++ |+|.+++....
T Consensus        97 ~E~~~-g~L~~~l~~~~  112 (432)
T 3p23_A           97 IELCA-ATLQEYVEQKD  112 (432)
T ss_dssp             EECCS-EEHHHHHHSSS
T ss_pred             EECCC-CCHHHHHHhcC
Confidence            99997 79999997653

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.22  E-value=8.1e-12  Score=99.21  Aligned_cols=95  Identities=21%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             cCccccceeccCCceeEEEEEcC----CCCeEEEEEecCCCCCCch-------hhHHHHHHHHHHHhcCCCCcccceeeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQI-------ADQKEFLAEIEALTKIRHRNIVKFYGF  194 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~----~g~~vavk~l~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~nlv~l~g~  194 (226)
                      ++|...+.||+|+||.||++...    ++..+|+|...........       .....+.+|+..+..++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            45788889999999999999774    5788999998752110000       011346788899999999999999999


Q ss_pred             EEe----CCeEEEEEEccCCCChhhhccCCc
Q 040605          195 CSH----ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       195 ~~~----~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..    ....++||||+ +|+|.+++...+
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~  146 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG  146 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC
Confidence            987    67889999999 999999998654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.22  E-value=3.5e-12  Score=99.79  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=69.8

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCc--hhhHHHHHHHHHHHhcC----CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQ--IADQKEFLAEIEALTKI----RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~--~~~~~~~~~e~~~l~~l----~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||++.. .++..||+|.+........  ......+.+|+.++.++    +|+||+++++++..
T Consensus        30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~  109 (312)
T 2iwi_A           30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET  109 (312)
T ss_dssp             ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC--
T ss_pred             hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec
Confidence            46788899999999999999976 4788999999865221110  01223466788888888    89999999999998


Q ss_pred             CCeEEEEEEc-cCCCChhhhccCC
Q 040605          198 ARHSFLVYEY-LERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~-~~~g~L~~~l~~~  220 (226)
                      .+..++|+|| +++++|.+++...
T Consensus       110 ~~~~~~v~e~~~~~~~L~~~l~~~  133 (312)
T 2iwi_A          110 QEGFMLVLERPLPAQDLFDYITEK  133 (312)
T ss_dssp             ---CEEEEECCSSEEEHHHHHHHH
T ss_pred             CCeEEEEEEecCCCCCHHHHHHhc
Confidence            8999999999 7899999998754

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.21  E-value=7.4e-12  Score=98.41  Aligned_cols=94  Identities=26%  Similarity=0.477  Sum_probs=71.7

Q ss_pred             HhcCccccceeccCCceeEEEEEc--CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC---CCCcccceeeEEE--
Q 040605          124 AKNDFDAKYCIGNGGHGSVYKAEL--PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI---RHRNIVKFYGFCS--  196 (226)
Q Consensus       124 ~~~~~~~~~~lg~g~~g~v~~~~~--~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l---~h~nlv~l~g~~~--  196 (226)
                      ..++|...+.||+|+||.||++..  .+|..||+|.+.......  .....+.+|+.++..+   +||||+++++++.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT--SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc--cCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            346788889999999999999976  467899999986421111  1123466677666655   8999999999987  


Q ss_pred             ---eCCeEEEEEEccCCCChhhhccCC
Q 040605          197 ---HARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       197 ---~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                         .....++|+||++ |+|.+++...
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~  112 (326)
T 1blx_A           87 RTDRETKLTLVFEHVD-QDLTTYLDKV  112 (326)
T ss_dssp             ECSSEEEEEEEEECCS-CBHHHHHHHS
T ss_pred             ccCCCceEEEEEecCC-CCHHHHHHhc
Confidence               4567899999998 7999998754

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.21  E-value=5.5e-12  Score=100.41  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             cCccccceeccCCceeEEEEEcC---------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccc------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP---------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK------  190 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~---------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~------  190 (226)
                      ++|...+.||+|+||.||++...         ++..||+|.+...         +.+.+|+.++.+++|||+++      
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            56888889999999999999765         3789999998641         35889999999999999998      


Q ss_pred             ---------eeeEEEe-CCeEEEEEEccCCCChhhhccCC
Q 040605          191 ---------FYGFCSH-ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       191 ---------l~g~~~~-~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                               +++++.. .+..++||||+ +|+|.+++...
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~  151 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS  151 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence                     6777766 67889999999 99999999854

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.19  E-value=3.8e-11  Score=96.24  Aligned_cols=92  Identities=11%  Similarity=0.011  Sum_probs=61.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHH---HHHHhcCCCCccccee-------eE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAE---IEALTKIRHRNIVKFY-------GF  194 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e---~~~l~~l~h~nlv~l~-------g~  194 (226)
                      .+|...+.||+|+||.||++... +|..||||++... ........+.+..|   +..+.. +|||+++++       ++
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMG-AENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECC-STTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEec-ccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            34777889999999999999754 7899999999762 22223345677788   455666 799987744       44


Q ss_pred             EEeC-----------------CeEEEEEEccCCCChhhhccCC
Q 040605          195 CSHA-----------------RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       195 ~~~~-----------------~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..+                 ...++||||++ |+|.++++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~  181 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL  181 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence            4332                 33799999999 9999999753

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.18  E-value=1.3e-11  Score=100.69  Aligned_cols=83  Identities=30%  Similarity=0.430  Sum_probs=65.8

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC----C--
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA----R--  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~----~--  199 (226)
                      .|...+.||+|+||.||++... +|..||||++....        +.+.+|+++|+.++|+||+++++++...    +  
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~  126 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV  126 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence            4777789999999999999875 68999999986521        1234799999999999999999998542    2  


Q ss_pred             eEEEEEEccCCCChhhhcc
Q 040605          200 HSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~  218 (226)
                      ..++||||+++ +|.+.+.
T Consensus       127 ~~~lv~e~~~~-~l~~~~~  144 (420)
T 1j1b_A          127 YLNLVLDYVPE-TVYRVAR  144 (420)
T ss_dssp             EEEEEEECCCE-EHHHHHH
T ss_pred             eEEeehhcccc-cHHHHHH
Confidence            36799999984 6666554

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.18  E-value=6.6e-11  Score=96.76  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=73.8

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC------CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI------RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l------~h~nlv~l~g~~~~~  198 (226)
                      .+|...+.||+|+||.||++... ++..||||.+..     .....+.+.+|+.++..+      +|+||+++++++...
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~-----~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~  171 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN-----EKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR  171 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC-----ccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence            45888899999999999999654 688999999864     122346777888887765      577999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +..++||||++ |+|.+++...
T Consensus       172 ~~~~lv~e~~~-~~L~~~l~~~  192 (429)
T 3kvw_A          172 NHICMTFELLS-MNLYELIKKN  192 (429)
T ss_dssp             TEEEEEECCCC-CBHHHHHHHT
T ss_pred             CeEEEEEeccC-CCHHHHHHhc
Confidence            99999999997 7999988754

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.18  E-value=3.5e-11  Score=101.08  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCch----hhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQI----ADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~----~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      .+.||+|+||.||++.. .+..+++|+..........    ...+.|.+|++++.+++||||+++..++...+..++|||
T Consensus       341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEE
Confidence            45799999999999954 6788999987541111111    113558999999999999999977777778888899999


Q ss_pred             ccCCCChhhhccC
Q 040605          207 YLERGSLATNLSN  219 (226)
Q Consensus       207 ~~~~g~L~~~l~~  219 (226)
                      |+++|+|.++++.
T Consensus       420 ~~~ggsL~~~l~~  432 (540)
T 3en9_A          420 YINGKLAKDVIED  432 (540)
T ss_dssp             CCCSEEHHHHSTT
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999875

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.17  E-value=3.8e-11  Score=94.60  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=75.0

Q ss_pred             cCccccceeccCCceeEEEEEc--CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCc------ccceeeEEEe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL--PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN------IVKFYGFCSH  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~--~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------lv~l~g~~~~  197 (226)
                      ++|...+.||+|+||.||++..  .++..||||.++.     .....+.+.+|+.++..++|++      ++++++++..
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~-----~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKN-----VDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS-----SHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEec-----CCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            4678888999999999999975  3688999999864     1224577889999988876654      9999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCCc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .+..++||||+ +|+|.+++....
T Consensus        89 ~~~~~lv~e~~-~~~l~~~l~~~~  111 (339)
T 1z57_A           89 HGHICIVFELL-GLSTYDFIKENG  111 (339)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTT
T ss_pred             CCcEEEEEcCC-CCCHHHHHHhcC
Confidence            99999999999 799999987543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.14  E-value=1.5e-11  Score=99.48  Aligned_cols=82  Identities=24%  Similarity=0.336  Sum_probs=64.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR------  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~------  199 (226)
                      .+|...+.||+|+||.||++....+..+|+|++.....        ...+|+.+++.++||||+++++++...+      
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~  111 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV  111 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence            35778889999999999999887777799999864211        1236999999999999999999996543      


Q ss_pred             eEEEEEEccCCCChhhh
Q 040605          200 HSFLVYEYLERGSLATN  216 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~  216 (226)
                      ..++||||++++ +.+.
T Consensus       112 ~~~lv~e~~~~~-l~~~  127 (394)
T 4e7w_A          112 FLNLVLEYVPET-VYRA  127 (394)
T ss_dssp             EEEEEEECCSEE-HHHH
T ss_pred             EEEEEeeccCcc-HHHH
Confidence            278999999864 4433

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=90.94  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++... +|..||||.+....  ......+.+..+..++..++||||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv  102 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSG--NKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA  102 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTS--CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence            45777889999999999999775 78999999997521  1112223444555678888999999999999999999999


Q ss_pred             EEccCCCChhhhc
Q 040605          205 YEYLERGSLATNL  217 (226)
Q Consensus       205 ~e~~~~g~L~~~l  217 (226)
                      |||+ ++.+..+.
T Consensus       103 ~e~~-~~~~~~l~  114 (318)
T 2dyl_A          103 MELM-GTCAEKLK  114 (318)
T ss_dssp             ECCC-SEEHHHHH
T ss_pred             Eecc-CCcHHHHH
Confidence            9999 34444443

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.14  E-value=5.5e-11  Score=95.82  Aligned_cols=88  Identities=20%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC--------CCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR--------HRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~--------h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||+||++.. .++..||||.+..     .....+.+.+|+.++..++        |+||+++++++.
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-----~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~  111 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS-----AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK  111 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec-----CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence            5688889999999999999965 4788999999864     1224577899999999885        788999999987


Q ss_pred             ----eCCeEEEEEEccCCCChhhhccC
Q 040605          197 ----HARHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       197 ----~~~~~~lv~e~~~~g~L~~~l~~  219 (226)
                          .....++||||+ +|+|.+++..
T Consensus       112 ~~~~~~~~~~lv~e~~-~~~l~~~~~~  137 (397)
T 1wak_A          112 ISGVNGTHICMVFEVL-GHHLLKWIIK  137 (397)
T ss_dssp             EEETTEEEEEEEECCC-CCBHHHHHHH
T ss_pred             ecCCCCceEEEEEecc-CccHHHHHHh
Confidence                445789999999 5677776653

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.13  E-value=1.2e-10  Score=90.20  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=72.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEE-EeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFC-SHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~-~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++.. .+|..||+|.+.....      ...+.+|+.++..++|++++..+.++ ...+..++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 3uzp_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS------CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc------hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence            5688889999999999999975 5889999999865211      24688999999999998877777666 55678899


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      ||||+ +|+|.+++..
T Consensus        83 v~e~~-~~~L~~~~~~   97 (296)
T 3uzp_A           83 VMELL-GPSLEDLFNF   97 (296)
T ss_dssp             EEECC-CCBHHHHHHH
T ss_pred             EEEec-CCCHHHHHHh
Confidence            99999 8999999873

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.10  E-value=5.8e-11  Score=94.93  Aligned_cols=93  Identities=19%  Similarity=0.282  Sum_probs=69.3

Q ss_pred             cCccccceeccCCceeEEEEEcCC------CCeEEEEEecCCCCCCchh--------hHHHHHHHHHHHhcCCCCcccce
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS------GEFLAVKKFHSPLPGDQIA--------DQKEFLAEIEALTKIRHRNIVKF  191 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~------g~~vavk~l~~~~~~~~~~--------~~~~~~~e~~~l~~l~h~nlv~l  191 (226)
                      ++|...+.||+|+||.||++....      +..||||.+..... ....        ....+..|+..+..++|+||+++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-PLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-HHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccch-hHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            568888999999999999997754      47899999865210 0000        01234456667788899999999


Q ss_pred             eeEEEeC----CeEEEEEEccCCCChhhhccCC
Q 040605          192 YGFCSHA----RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       192 ~g~~~~~----~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++++...    ...++||||+ +|+|.+++...
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~  145 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN  145 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc
Confidence            9999764    4579999999 99999999754

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.10  E-value=2.3e-11  Score=95.54  Aligned_cols=96  Identities=18%  Similarity=0.314  Sum_probs=76.5

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCC--chhhHHHHHHHHHHHhcCC--CCcccceeeEEEeCC
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGD--QIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHAR  199 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~--~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~~  199 (226)
                      .++|...+.||+|+||.||++.. .++..||||.+.......  .....+.+.+|+.++.+++  |+|++++++++..++
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~  121 (320)
T 3a99_A           42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD  121 (320)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence            35688889999999999999965 578899999986521111  0012245778999999986  599999999999999


Q ss_pred             eEEEEEEccCC-CChhhhccCC
Q 040605          200 HSFLVYEYLER-GSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~-g~L~~~l~~~  220 (226)
                      ..++|+||+.. ++|.+++...
T Consensus       122 ~~~lv~e~~~~~~~L~~~l~~~  143 (320)
T 3a99_A          122 SFVLILERPEPVQDLFDFITER  143 (320)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHH
T ss_pred             cEEEEEEcCCCCccHHHHHhcc
Confidence            99999999986 8999998753

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.09  E-value=1.6e-10  Score=89.39  Aligned_cols=88  Identities=19%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEE-EeCCeEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFC-SHARHSF  202 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~-~~~~~~~  202 (226)
                      .++|...+.||+|+||.||++.. .++..||||.+.....      ...+.+|+.++..++|++++..++.+ ...+..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc------chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence            46788899999999999999975 5788999998754211      13588899999999988888777766 5577889


Q ss_pred             EEEEccCCCChhhhccC
Q 040605          203 LVYEYLERGSLATNLSN  219 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~  219 (226)
                      +||||+ +|+|.+++..
T Consensus        82 lv~e~~-~~~L~~~~~~   97 (296)
T 4hgt_A           82 MVMELL-GPSLEDLFNF   97 (296)
T ss_dssp             EEEECC-CCBHHHHHHH
T ss_pred             EEEEcc-CCCHHHHHHH
Confidence            999999 8999999873

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.07  E-value=2.5e-10  Score=91.88  Aligned_cols=90  Identities=27%  Similarity=0.321  Sum_probs=74.0

Q ss_pred             hcCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CC-----cccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HR-----NIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||+||++... ++..||||.++.     .......+..|+.++..++ |+     +++++.+++..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN-----KKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS-----SHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec-----cHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            467888899999999999999764 788999999864     1223567788888888774 44     49999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||++ |+|.+++...
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l~~~  149 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLLRNT  149 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHHHHT
T ss_pred             CCceEEEEecCC-CCHHHHHhhc
Confidence            999999999996 6999998754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.07  E-value=1.1e-10  Score=93.37  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-----------CCcccceee
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-----------HRNIVKFYG  193 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~nlv~l~g  193 (226)
                      ++|...+.||+|+||.||++.. .++..||||.+..     +......+.+|+.++.+++           |+||+++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~   93 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG-----DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD   93 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC-----CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence            4688888999999999999975 5789999999864     1224567889999998876           899999999


Q ss_pred             EEEeCC----eEEEEEEccCCCChhhhccC
Q 040605          194 FCSHAR----HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       194 ~~~~~~----~~~lv~e~~~~g~L~~~l~~  219 (226)
                      ++...+    ..+++|||+ +|+|.+++..
T Consensus        94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~  122 (373)
T 1q8y_A           94 HFNHKGPNGVHVVMVFEVL-GENLLALIKK  122 (373)
T ss_dssp             EEEEEETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred             HhhccCCCCceEEEEEecC-CCCHHHHHHH
Confidence            987643    789999999 8999999875

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.05  E-value=5.6e-10  Score=86.19  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             HHHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCc-----h---------hhHHHHHHHHHHHhcCC
Q 040605          119 VEIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQ-----I---------ADQKEFLAEIEALTKIR  184 (226)
Q Consensus       119 ~~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~-----~---------~~~~~~~~e~~~l~~l~  184 (226)
                      ..+......|...+.||+|+||.||++...+|..||+|.++.......     .         .....+.+|+.+|.+++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            334444455667789999999999999887799999999864211000     0         13467999999999999


Q ss_pred             CCcccceeeEEEeCCeEEEEEEccCCCChhhhcc
Q 040605          185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       185 h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~~l~  218 (226)
                        | +++.+++.. +..++||||+++|+|.+ +.
T Consensus       163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~  191 (282)
T 1zar_A          163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VR  191 (282)
T ss_dssp             --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CC
T ss_pred             --C-CCcCeEEec-cceEEEEEecCCCcHHH-cc
Confidence              5 666665543 45699999999999998 53

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.04  E-value=5.5e-10  Score=92.53  Aligned_cols=87  Identities=22%  Similarity=0.244  Sum_probs=70.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-CcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||.||++.. .++..||||.+.....      ...+..|++++..++| +++..+..++...+..+|
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l   80 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK------HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL   80 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS------SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc------cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence            5688888999999999999975 5789999998865221      1358899999999977 555566666677888999


Q ss_pred             EEEccCCCChhhhccC
Q 040605          204 VYEYLERGSLATNLSN  219 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~  219 (226)
                      ||||+ +|+|.+++..
T Consensus        81 vme~~-g~sL~~ll~~   95 (483)
T 3sv0_A           81 VMDLL-GPSLEDLFNF   95 (483)
T ss_dssp             EEECC-CCBHHHHHHH
T ss_pred             EEECC-CCCHHHHHHh
Confidence            99999 8999999874

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.01  E-value=5.3e-10  Score=88.63  Aligned_cols=89  Identities=19%  Similarity=0.257  Sum_probs=72.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CC-CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCc------ccceeeEEEe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SG-EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN------IVKFYGFCSH  197 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g-~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------lv~l~g~~~~  197 (226)
                      ++|...+.||+|+||.||++... ++ ..||+|.++.     .....+.+.+|+.++..++|++      ++.+.+++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~-----~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN-----VGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc-----cccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence            56888889999999999999763 44 6899999864     1224567889999999887766      8999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCC
Q 040605          198 ARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+..++||||+ +|+|.+++...
T Consensus        94 ~~~~~lv~e~~-~~~l~~~l~~~  115 (355)
T 2eu9_A           94 HGHMCIAFELL-GKNTFEFLKEN  115 (355)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHT
T ss_pred             CCeEEEEEecc-CCChHHHHHhc
Confidence            99999999999 57788777643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.94  E-value=1.2e-09  Score=92.25  Aligned_cols=89  Identities=20%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             ccCCceeEEEE-EcCCCCeEEEEEecCCCCCC------chhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeEEEEEE
Q 040605          135 GNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGD------QIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHSFLVYE  206 (226)
Q Consensus       135 g~g~~g~v~~~-~~~~g~~vavk~l~~~~~~~------~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~~lv~e  206 (226)
                      +.|+.|....+ ....|..+++|.+.......      .....++|.+|+++|+++ .|+||+++++++.+.+..|||||
T Consensus       243 ~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVME  322 (569)
T 4azs_A          243 YAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVME  322 (569)
T ss_dssp             C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEE
T ss_pred             ccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEe
Confidence            34444443332 22358899999996521111      112346799999999999 79999999999999999999999


Q ss_pred             ccCCCChhhhccCCccc
Q 040605          207 YLERGSLATNLSNDAAA  223 (226)
Q Consensus       207 ~~~~g~L~~~l~~~~~~  223 (226)
                      |+++|+|.++|...++.
T Consensus       323 yv~G~~L~d~i~~~~~l  339 (569)
T 4azs_A          323 KLPGRLLSDMLAAGEEI  339 (569)
T ss_dssp             CCCSEEHHHHHHTTCCC
T ss_pred             cCCCCcHHHHHHhCCCC
Confidence            99999999999876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.56  E-value=3.7e-08  Score=86.13  Aligned_cols=49  Identities=35%  Similarity=0.558  Sum_probs=43.6

Q ss_pred             CCCCceeeccccceeeecCCCccccccCcccccCCCCCCCCCCCCCccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTCKAL   51 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~~Lcg~~~~~~~c~~~   51 (226)
                      |++|+.||||+|+|+|.||..++|..++..+|.||++|||.+.  .+|...
T Consensus       703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~  751 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPS  751 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSC
T ss_pred             CCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCC
Confidence            5789999999999999999999999999999999999999875  378543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.47  E-value=1.3e-07  Score=71.93  Aligned_cols=89  Identities=15%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             ccccceeccCCceeEEEEEc-CCCCe--EEEEEecCCCCCCc--------------------hhhHHHHHHHHHHHhcCC
Q 040605          128 FDAKYCIGNGGHGSVYKAEL-PSGEF--LAVKKFHSPLPGDQ--------------------IADQKEFLAEIEALTKIR  184 (226)
Q Consensus       128 ~~~~~~lg~g~~g~v~~~~~-~~g~~--vavk~l~~~~~~~~--------------------~~~~~~~~~e~~~l~~l~  184 (226)
                      +...+.||+|+||.||++.. .+|..  ||||.++.......                    ......+.+|+..+.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999987 68888  99998754211100                    011246889999999998


Q ss_pred             CCcccceeeEEEeCCeEEEEEEccCC-C----Chhhhcc
Q 040605          185 HRNIVKFYGFCSHARHSFLVYEYLER-G----SLATNLS  218 (226)
Q Consensus       185 h~nlv~l~g~~~~~~~~~lv~e~~~~-g----~L~~~l~  218 (226)
                      |+++....-+..  +..+|||||+.+ |    +|.+++.
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~  165 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGR  165 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGG
T ss_pred             hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhh
Confidence            886532221211  356899999952 4    6666543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.46  E-value=7.2e-08  Score=77.20  Aligned_cols=92  Identities=9%  Similarity=0.001  Sum_probs=54.9

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCC-----C-----chhhHHHHHHHHHHHhcCCCCcccceeeEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPG-----D-----QIADQKEFLAEIEALTKIRHRNIVKFYGFCS  196 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~-----~-----~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~  196 (226)
                      -|.....||+|+||.||+|..++|..||||.++.....     .     .......+..++++.+...|+|++++.....
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            36778899999999999999889999999987531100     0     0001122333333333333444443322111


Q ss_pred             eC------CeEEEEEEccCCCChhhhcc
Q 040605          197 HA------RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       197 ~~------~~~~lv~e~~~~g~L~~~l~  218 (226)
                      ..      ...+|||||+++++|.++..
T Consensus       176 ~vp~p~~~~~~~LVME~i~G~~L~~l~~  203 (397)
T 4gyi_A          176 PVPEPIAQSRHTIVMSLVDALPMRQVSS  203 (397)
T ss_dssp             SCCCEEEEETTEEEEECCSCEEGGGCCC
T ss_pred             CCCeeeeccCceEEEEecCCccHhhhcc
Confidence            11      12369999999989887654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.45  E-value=1e-07  Score=77.44  Aligned_cols=59  Identities=15%  Similarity=0.073  Sum_probs=45.1

Q ss_pred             cCccccceeccCCceeEEEEE-cCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH  185 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~-~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h  185 (226)
                      ..|...+.||+|+||.||++. ..+|+.||||++.... .......+.|.+|+.++..++|
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~-~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTE-RPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSC-C----CCHHHHHHHHGGGGSTT
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCC-CccHHHHHHHHHHHHHHHhhcc
Confidence            446777899999999999997 4579999999987422 2222235789999999999987

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.73  E-value=0.00012  Score=55.24  Aligned_cols=90  Identities=14%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             HHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeE
Q 040605          123 RAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHS  201 (226)
Q Consensus       123 ~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~  201 (226)
                      ....+|.....++.++.+.||+... .+..+++|....... .   ....+.+|+.++..+. |..+.++++++...+..
T Consensus        11 ~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~-~---~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~   85 (263)
T 3tm0_A           11 KLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-G---TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGT-T---STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccC-C---CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence            3345676666778888889999875 468999999854111 1   1235888999988874 67778899999888899


Q ss_pred             EEEEEccCCCChhhhc
Q 040605          202 FLVYEYLERGSLATNL  217 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l  217 (226)
                      ++||||+++.+|.+.+
T Consensus        86 ~lv~e~i~G~~l~~~~  101 (263)
T 3tm0_A           86 NLLMSEADGVLCSEEY  101 (263)
T ss_dssp             EEEEECCSSEEHHHHC
T ss_pred             EEEEEecCCeehhhcc
Confidence            9999999999998764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.44  E-value=0.00043  Score=51.89  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=55.4

Q ss_pred             ccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcc--cceeeEEEeCCeEEEEEEccCCCC
Q 040605          135 GNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNI--VKFYGFCSHARHSFLVYEYLERGS  212 (226)
Q Consensus       135 g~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nl--v~l~g~~~~~~~~~lv~e~~~~g~  212 (226)
                      +.|..+.||+....+|..+++|.....       ....+.+|+.++..+.+.++  .+++++....+..++||||+++.+
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~  101 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD  101 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcc
Confidence            355568999998777888999987541       11357788888888854454  458888777778899999999888


Q ss_pred             hh
Q 040605          213 LA  214 (226)
Q Consensus       213 L~  214 (226)
                      |.
T Consensus       102 l~  103 (264)
T 1nd4_A          102 LL  103 (264)
T ss_dssp             TT
T ss_pred             cC
Confidence            84

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.23  E-value=0.00011  Score=60.92  Aligned_cols=30  Identities=17%  Similarity=0.039  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          170 QKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       170 ~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      .++|..|++++++++|+|+|+++|||.+..
T Consensus       323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          323 SETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            468999999999999999999999998754

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.52  E-value=0.0092  Score=31.48  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=11.8

Q ss_pred             ehhhHHH-HHHHHHHHHHHHHHHhhccc
Q 040605           65 IVFHLLG-ALFTSIVLTAIFFIFQKRTL   91 (226)
Q Consensus        65 i~~~~~~-~~~~~~~~~~~~~~~~~r~~   91 (226)
                      |++.+++ +++++++++++++++++|+.
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence            3444444 44444444444444444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=96.26  E-value=0.0063  Score=31.99  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=12.5

Q ss_pred             ehhhHHHHHHHHHHHHHHHHHHhhccc
Q 040605           65 IVFHLLGALFTSIVLTAIFFIFQKRTL   91 (226)
Q Consensus        65 i~~~~~~~~~~~~~~~~~~~~~~~r~~   91 (226)
                      |++.++|++++++++++++++.+||+.
T Consensus        14 Ia~~vVGvll~vi~~l~~~~~~RRR~~   40 (44)
T 2jwa_A           14 IISAVVGILLVVVLGVVFGILIKRRQQ   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHhheehhhh
Confidence            455555544444444444444444443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=96.21  E-value=0.0062  Score=32.07  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=12.1

Q ss_pred             ehhhHHH-HHHHHHHHHHHHHHHhhcccc
Q 040605           65 IVFHLLG-ALFTSIVLTAIFFIFQKRTLD   92 (226)
Q Consensus        65 i~~~~~~-~~~~~~~~~~~~~~~~~r~~~   92 (226)
                      |++.+++ +++++++++++++++++|+.+
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3444443 444444444444444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.14  E-value=0.0038  Score=55.18  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=24.8

Q ss_pred             CCCceeeccccceeeecCCCccccccCcccccCCCCCC
Q 040605            2 QGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLC   39 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~~Lc   39 (226)
                      ++|+.||||+|+|+|.+|..  |..+....+.||+..|
T Consensus       526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred             ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence            35677777777777777753  4455566777888877

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.06  E-value=0.011  Score=46.70  Aligned_cols=80  Identities=14%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             cceeccCCceeEEEEEcCCCCeEEEEEec--CCCCCCchhhHHHHHHHHHHHhcCC--CCcccceeeEEEeC---CeEEE
Q 040605          131 KYCIGNGGHGSVYKAELPSGEFLAVKKFH--SPLPGDQIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHA---RHSFL  203 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g~~vavk~l~--~~~~~~~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~---~~~~l  203 (226)
                      ...++.|.+..+|+.... +..+++|+..  ....   ......+.+|..++..+.  +..+.++++++...   +..++
T Consensus        43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~---~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL---LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             EEECCC-CCSCEEEEECS-SCEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC---CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            456889999999998775 4578888765  2110   012356788999998886  45577888888765   45899


Q ss_pred             EEEccCCCChh
Q 040605          204 VYEYLERGSLA  214 (226)
Q Consensus       204 v~e~~~~g~L~  214 (226)
                      ||||+++..+.
T Consensus       119 vme~v~G~~l~  129 (359)
T 3dxp_A          119 IMEFVSGRVLW  129 (359)
T ss_dssp             EEECCCCBCCC
T ss_pred             EEEecCCeecC
Confidence            99999988774

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.49  E-value=0.026  Score=43.01  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCC---cccceeeEEEeCCeEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR---NIVKFYGFCSHARHSFL  203 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~---nlv~l~g~~~~~~~~~l  203 (226)
                      .+.....+|.|..+.||+..+.+|+.+.+|+-......    ....|..|.+.|..+.-.   -+.+++++  .  ..++
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~l   87 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTL   87 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEE
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc----hhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceE
Confidence            34455678999999999999999999999986532111    224578898888776422   22333433  2  2478


Q ss_pred             EEEccCCCCh
Q 040605          204 VYEYLERGSL  213 (226)
Q Consensus       204 v~e~~~~g~L  213 (226)
                      ||||++.+..
T Consensus        88 v~e~l~~~~~   97 (288)
T 3f7w_A           88 AMEWVDERPP   97 (288)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEeecccCC
Confidence            9999987654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=94.58  E-value=0.24  Score=38.30  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=58.6

Q ss_pred             cccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC---CCcccceeeEEEeCCeEEEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR---HRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~---h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .....++.|....+|+... ++..+++|.-..    .   ....|..|.+.|..+.   ...+.++++++...+..++||
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~----~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvm  110 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINER----S---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLL  110 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEG----G---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEE
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCc----c---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEE
Confidence            3445688999999999876 567888887643    1   2467888988887773   356778888887778899999


Q ss_pred             EccCCCCh
Q 040605          206 EYLERGSL  213 (226)
Q Consensus       206 e~~~~g~L  213 (226)
                      ||+++..+
T Consensus       111 e~l~G~~~  118 (312)
T 3jr1_A          111 EALNKSKN  118 (312)
T ss_dssp             ECCCCCCC
T ss_pred             EeccCCCC
Confidence            99998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=93.93  E-value=0.02  Score=50.09  Aligned_cols=19  Identities=47%  Similarity=0.817  Sum_probs=9.5

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      ++|+.||||+|+|+|.||.
T Consensus       680 ~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             TTCCEEECCSSCCEECCCG
T ss_pred             CCCCEEECCCCcccCcCCh
Confidence            3445555555555555554

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=93.82  E-value=0.65  Score=34.59  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             eccCCce-eEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeCCeEEEEEEccCC
Q 040605          134 IGNGGHG-SVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHARHSFLVYEYLER  210 (226)
Q Consensus       134 lg~g~~g-~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~~~~~lv~e~~~~  210 (226)
                      +..|..+ .||+-... ++..+.+|.-..       .....+.+|...|+.+. +--+-++++++...+..++|||++++
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G  104 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKG-------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG  104 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEET-------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCC-------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence            3344444 58887654 456788887643       13467888999888763 33356788888888999999999998


Q ss_pred             CChhhhc
Q 040605          211 GSLATNL  217 (226)
Q Consensus       211 g~L~~~l  217 (226)
                      .++.+..
T Consensus       105 ~~~~~~~  111 (272)
T 4gkh_A          105 KTAFQVL  111 (272)
T ss_dssp             EEHHHHH
T ss_pred             ccccccc
Confidence            8776643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=93.73  E-value=0.054  Score=37.77  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNKGLCG   40 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~~Lcg   40 (226)
                      |++|+.|||++|+|++..|.. ..+..+....+.+|. +.+
T Consensus        53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~   92 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKS   92 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCE
Confidence            568999999999999765543 233344444555553 444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=93.28  E-value=0.068  Score=37.47  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNKGLCG   40 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~~Lcg   40 (226)
                      |++|+.|||++|+|++-.|.. ..+..+....+.+|. +.+
T Consensus        56 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~   95 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKS   95 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             CcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cce
Confidence            568999999999999854432 233444444555553 443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.25  E-value=0.074  Score=37.86  Aligned_cols=36  Identities=8%  Similarity=0.102  Sum_probs=22.6

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|+|++..|... .+.......+.+|.
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            4678888888888888777632 23334444444443

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=92.89  E-value=0.17  Score=40.35  Aligned_cols=79  Identities=16%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCC-CC-c-hhhHHHHHHHHHHHhcCCC--Cccc-ceeeEEEeCCeEEE
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLP-GD-Q-IADQKEFLAEIEALTKIRH--RNIV-KFYGFCSHARHSFL  203 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~-~~-~-~~~~~~~~~e~~~l~~l~h--~nlv-~l~g~~~~~~~~~l  203 (226)
                      .+.+|.|.++.||++... ++..++||....... .. . ......+..|.+++..+..  +..+ +++.+  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            346899999999999764 568899998653111 00 0 0122456778888876632  3444 44433  3455689


Q ss_pred             EEEccCCC
Q 040605          204 VYEYLERG  211 (226)
Q Consensus       204 v~e~~~~g  211 (226)
                      ||||+++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999864

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=92.78  E-value=0.1  Score=26.55  Aligned_cols=13  Identities=31%  Similarity=0.475  Sum_probs=6.1

Q ss_pred             ehhhHHHHHHHHH
Q 040605           65 IVFHLLGALFTSI   77 (226)
Q Consensus        65 i~~~~~~~~~~~~   77 (226)
                      |+++++++++.++
T Consensus        13 IAGiVvG~v~gv~   25 (38)
T 2k1k_A           13 IVAVIFGLLLGAA   25 (38)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eeeeehHHHHHHH
Confidence            4455555544333

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=92.17  E-value=0.02  Score=47.05  Aligned_cols=57  Identities=7%  Similarity=-0.058  Sum_probs=14.9

Q ss_pred             ceeEEEEEcCC-CCeEEE------EEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe
Q 040605          139 HGSVYKAELPS-GEFLAV------KKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH  197 (226)
Q Consensus       139 ~g~v~~~~~~~-g~~vav------k~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~  197 (226)
                      ||.||+|.+.. ..+|||      |..+..  ........+|.+|..++...+|+|+++.+++...
T Consensus       152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~--~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          152 YTTLNREPAYKKHMPVLKETHDERDSTGQD--GVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred             chhhhcccccccCCchhhhhccCccccccc--cccccccccccccccccccccccccCCCcceEEe
Confidence            99999998853 467888      765431  1111234678999999999999999999887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=91.70  E-value=0.13  Score=40.19  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=25.2

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNKGLCGS   41 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~~Lcg~   41 (226)
                      |++|+.||||+|+|+|..|.. ..+..+....+.+| .|.+.
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~   95 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESL   95 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred             ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-cccee
Confidence            578999999999999988864 22333433444444 34443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=91.56  E-value=0.19  Score=39.14  Aligned_cols=19  Identities=26%  Similarity=0.167  Sum_probs=12.8

Q ss_pred             CCCceeeccc-cceeeecCC
Q 040605            2 QGLLFIDISY-NDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~-N~L~G~iP~   20 (226)
                      ++|+.|||++ |+|++..|.
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~   50 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELR   50 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGG
T ss_pred             CCeeEEEccCCCCCCCcChh
Confidence            4577777775 777776554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=91.39  E-value=0.13  Score=43.34  Aligned_cols=20  Identities=20%  Similarity=0.275  Sum_probs=12.4

Q ss_pred             CCCCceeeccccceeeecCC
Q 040605            1 MQGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~   20 (226)
                      |++|+.||||+|+|++..|.
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~  536 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTF  536 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCG
T ss_pred             CCCCCEEECCCCcCCCCChh
Confidence            35666666666666665553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=90.77  E-value=0.15  Score=37.11  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             CCCCceeeccccceeeecCCCcc-ccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTA-FRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~-~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|++++..|.... +..+....+.+|.
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence            57899999999999998886422 2333334444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=90.62  E-value=0.15  Score=37.15  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=23.4

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|++++..|... .+..+....+.+|.
T Consensus       103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            4689999999999999877642 22333334444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=90.25  E-value=0.25  Score=34.40  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNKGLCG   40 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~~Lcg   40 (226)
                      +++|+.|||++|++++..|.. ..+.......+.+| .+.+
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~  114 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKS  114 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceE
Confidence            468999999999999866653 23344444455555 3444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=90.09  E-value=0.2  Score=35.69  Aligned_cols=36  Identities=36%  Similarity=0.540  Sum_probs=23.7

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|+|++..|... .+.......+.+|.
T Consensus        77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            5789999999999998777532 23334444444554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=89.94  E-value=0.22  Score=41.39  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             CCCCceeeccccceeeecCCCccccccCcccccCCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGS   41 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~~Lcg~   41 (226)
                      +++|+.||||+|+|+ .||....+.........+|. +.+.
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~-l~~~  488 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ-LKSV  488 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC-CCCC
T ss_pred             CChhcEEECCCCccC-cCCCcccCccCCEEecCCCc-cCCc
Confidence            467889999999988 78875444444444555553 4443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.79  E-value=0.28  Score=32.55  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             CCceeeccccceeeecCCCc-cccccCcccccCCCCCC
Q 040605            3 GLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNKGLC   39 (226)
Q Consensus         3 ~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~~Lc   39 (226)
                      +|+.|||++|+|+.--+... .+..+....+.+||..|
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            68999999999987333321 12334445677787666

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=89.09  E-value=1.3  Score=33.80  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             ceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCC---cccceeeEEE-eCCeEEEEEEc
Q 040605          132 YCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHR---NIVKFYGFCS-HARHSFLVYEY  207 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~---nlv~l~g~~~-~~~~~~lv~e~  207 (226)
                      ..++.|....+|+.    |..+++|.-..      ......+.+|.++|..+.+.   .+.+.+.++. ..+..+++|||
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~   94 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKS------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK   94 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESS------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCC------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence            45777888888876    56778887422      12346789999999988653   2445566664 34567899999


Q ss_pred             cCCCChhh
Q 040605          208 LERGSLAT  215 (226)
Q Consensus       208 ~~~g~L~~  215 (226)
                      +++..|.+
T Consensus        95 i~G~~l~~  102 (306)
T 3tdw_A           95 VQGQILGE  102 (306)
T ss_dssp             CCSEECHH
T ss_pred             cCCeECch
Confidence            99888765

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=88.85  E-value=0.13  Score=25.51  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=9.8

Q ss_pred             ehhhHHHHHHHHHHHHHHHHHHhhc
Q 040605           65 IVFHLLGALFTSIVLTAIFFIFQKR   89 (226)
Q Consensus        65 i~~~~~~~~~~~~~~~~~~~~~~~r   89 (226)
                      |++.++++++++++.+.+.++.|||
T Consensus        10 IaagVvglll~vii~l~~~~~iRRr   34 (35)
T 1iij_A           10 IIATVVGVLLFLILVVVVGILIKRR   34 (35)
T ss_dssp             HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred             eHHHHHHHHHHHHHHHHhheEEeec
Confidence            3444444333333333333334443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=88.82  E-value=0.37  Score=36.16  Aligned_cols=39  Identities=28%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNKGLCG   40 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~~Lcg   40 (226)
                      +++|+.||+++|++++..|.. ..+.......+.+|. +.+
T Consensus       156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~  195 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKS  195 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSC
T ss_pred             CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCc
Confidence            467899999999999766653 223344444454553 443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=88.77  E-value=0.35  Score=35.32  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=21.7

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGN   35 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN   35 (226)
                      |++|+.|||++|+|+ .||... .+.......+.+|
T Consensus       111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             chhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence            467899999999998 777643 2233333444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=88.59  E-value=0.33  Score=33.66  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=25.8

Q ss_pred             CCCceeeccccceeeecCCCc-cccccCcccccCCCCCCCC
Q 040605            2 QGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNKGLCGS   41 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~~Lcg~   41 (226)
                      ++|+.|||++|++++..|... .+..+....+.+|. +.+.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l   69 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVL   69 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCcc
Confidence            578999999999999888642 33444444555553 4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=88.47  E-value=0.34  Score=35.81  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|+|++..|.. ..+.......+.+|.
T Consensus       130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            467899999999998766642 223344444454553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=88.38  E-value=0.35  Score=33.74  Aligned_cols=39  Identities=15%  Similarity=0.079  Sum_probs=25.9

Q ss_pred             CCCceeeccccceeeecCCCc-cccccCcccccCCCCCCCC
Q 040605            2 QGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNKGLCGS   41 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~~Lcg~   41 (226)
                      ++|+.|||++|+|++..|... .+..+....+.+| .+.+.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i   72 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAI   72 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCcc
Confidence            478999999999999888642 3344444455555 34443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=88.17  E-value=0.13  Score=34.73  Aligned_cols=17  Identities=18%  Similarity=0.302  Sum_probs=11.5

Q ss_pred             CCCCceeeccccceeee
Q 040605            1 MQGLLFIDISYNDLQGL   17 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~   17 (226)
                      +++|+.|++++|++++.
T Consensus        41 l~~L~~L~l~~n~l~~~   57 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI   57 (149)
T ss_dssp             CTTCCEEECTTSCCCCC
T ss_pred             cCCCcEEECcCCCCCCc
Confidence            35677777777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=87.93  E-value=0.48  Score=33.82  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=22.7

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|++++..|.. ..+.......+.+|.
T Consensus        99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            468999999999998766542 223344444444553

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=87.43  E-value=0.21  Score=25.81  Aligned_cols=6  Identities=17%  Similarity=0.617  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 040605           69 LLGALF   74 (226)
Q Consensus        69 ~~~~~~   74 (226)
                      ++++++
T Consensus        20 v~Gv~l   25 (41)
T 2k9y_A           20 AVGVVL   25 (41)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.38  E-value=0.25  Score=40.72  Aligned_cols=20  Identities=30%  Similarity=0.340  Sum_probs=12.6

Q ss_pred             CCCCceeeccccceeeecCC
Q 040605            1 MQGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~   20 (226)
                      +++|+.||||+|+|+|..|.
T Consensus       190 l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             CTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCEEECCCCCCCCCCHh
Confidence            35666777777777765554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=87.30  E-value=0.48  Score=33.52  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGN   35 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN   35 (226)
                      |++|+.|||++|++++.+|... .+.......+.+|
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5689999999999999888642 2233333344444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=87.13  E-value=0.21  Score=34.38  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=9.8

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      ++|+.|||++|++++.+|.
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~   89 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDM   89 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCH
T ss_pred             CCCCEEECcCCcCchHHHH
Confidence            3455555555555554443

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=85.60  E-value=0.44  Score=37.22  Aligned_cols=84  Identities=7%  Similarity=0.013  Sum_probs=52.0

Q ss_pred             cee-ccCCceeEEEEEcC-------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-C--CcccceeeEEEeC--
Q 040605          132 YCI-GNGGHGSVYKAELP-------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-H--RNIVKFYGFCSHA--  198 (226)
Q Consensus       132 ~~l-g~g~~g~v~~~~~~-------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h--~nlv~l~g~~~~~--  198 (226)
                      ..| +.|....+|+....       ++..+++|.-....... ......+.+|..++..+. +  -.+.++++++...  
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~-~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVP-VFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCC-SSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccc-cCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            456 78888889987654       25678888654311000 000134677777777663 2  2455677776554  


Q ss_pred             -CeEEEEEEccCCCChhhh
Q 040605          199 -RHSFLVYEYLERGSLATN  216 (226)
Q Consensus       199 -~~~~lv~e~~~~g~L~~~  216 (226)
                       +..++||||+++..+.+.
T Consensus       105 ~g~~~~v~e~l~G~~l~~~  123 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPDV  123 (357)
T ss_dssp             TSSCEEEEECCCCBCCCBT
T ss_pred             cCCceEEEEecCCCChhhc
Confidence             356899999998777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=85.49  E-value=0.5  Score=35.96  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|++++..|.. ..+.......+.+|.
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            467888999999888755532 122333334444553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=85.48  E-value=0.66  Score=36.15  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=24.5

Q ss_pred             CCCCceeeccccceeeecCCCc--cccccCcccccCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST--AFRNAPLESLKGNKGLC   39 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~--~~~~~~~~~~~gN~~Lc   39 (226)
                      +++|+.|||++|+++ .+|...  .+.......+.+|+-.|
T Consensus       276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            467888899998888 677642  33444455566666444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=85.24  E-value=0.7  Score=35.10  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|+|++-.+.. ..+.......+.+|.
T Consensus       147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            467999999999998543332 123344444444553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=85.09  E-value=0.7  Score=34.51  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGN   35 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN   35 (226)
                      +++|+.|+|++|++++..|.. ..+.......+.+|
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            467888899998888755542 12233333444455

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=84.65  E-value=0.48  Score=35.79  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             CCCCceeeccccceee--ecCC
Q 040605            1 MQGLLFIDISYNDLQG--LIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G--~iP~   20 (226)
                      |+.|+.||||+|+|++  .+|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~  190 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSS  190 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTT
T ss_pred             CCCCCEEECCCCCCCCCccchh
Confidence            5689999999999999  6665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=84.63  E-value=0.55  Score=37.92  Aligned_cols=20  Identities=15%  Similarity=0.054  Sum_probs=12.6

Q ss_pred             CCCCceeeccccceeeecCC
Q 040605            1 MQGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~   20 (226)
                      |++|+.|+|++|++++..|.
T Consensus       230 l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTT
T ss_pred             CccCCEEECCCCceeEEChh
Confidence            35566677777766666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=84.60  E-value=0.46  Score=35.86  Aligned_cols=39  Identities=23%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             CCCCceeeccccceeeecCCCcccc--ccCcccccCCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFR--NAPLESLKGNKGLCGS   41 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~--~~~~~~~~gN~~Lcg~   41 (226)
                      +++|+.||||+|+|++. .....+.  .+....+.||+ +|+.
T Consensus       195 l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~~  235 (267)
T 3rw6_A          195 APNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCDT  235 (267)
T ss_dssp             STTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGGG
T ss_pred             CCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Cccc
Confidence            57899999999999985 2212222  45555677777 6653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=83.48  E-value=0.86  Score=31.51  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=23.4

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|+|++..|.. ..+.......+.+|.
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            468999999999999765543 233344444454553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=83.27  E-value=0.67  Score=32.12  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=10.2

Q ss_pred             CCceeeccccceeee
Q 040605            3 GLLFIDISYNDLQGL   17 (226)
Q Consensus         3 ~L~~ldls~N~L~G~   17 (226)
                      +|+.||||+|++++.
T Consensus        43 ~L~~L~Ls~N~l~~~   57 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL   57 (176)
T ss_dssp             CCSEEECCSSCCCEE
T ss_pred             CCCEEECCCCCCCcc
Confidence            567777777777664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=83.22  E-value=1.2  Score=32.18  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|++++..|... .+.......+.+|.
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence            5689999999999998777532 22333334444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=83.20  E-value=0.92  Score=32.11  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=23.3

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|++++..|... .+..+....+.+|.
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            5789999999999998776532 22333333444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=83.17  E-value=1  Score=34.81  Aligned_cols=36  Identities=14%  Similarity=-0.080  Sum_probs=21.8

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||++|++.|.+|... .+.........+|+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence            4678888888888888888642 22333333444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=82.74  E-value=0.36  Score=41.29  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=8.4

Q ss_pred             CCCceeeccccceee
Q 040605            2 QGLLFIDISYNDLQG   16 (226)
Q Consensus         2 ~~L~~ldls~N~L~G   16 (226)
                      ++|+.|||++|+|++
T Consensus       560 ~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          560 FELKIIDLGLNNLNT  574 (680)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             cCcceeECCCCCCCc
Confidence            455555555555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=82.56  E-value=0.61  Score=39.28  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=14.2

Q ss_pred             CCCCceeeccccceeeecCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS   21 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~   21 (226)
                      |++|+.||||+|+|+ .||..
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGG
T ss_pred             cccCcEeecCccccc-ccchh
Confidence            456777888888777 67753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=82.26  E-value=0.78  Score=37.17  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=15.1

Q ss_pred             CCCCceeeccccceeeecCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS   21 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~   21 (226)
                      |++|+.|+|++|++++..|..
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~  261 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNA  261 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTT
T ss_pred             ccCCCEEEeCCCcCceECHHH
Confidence            456778888888887776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=82.21  E-value=1  Score=37.59  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             CCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            2 QGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      ++|+.|||++|+++ .||... .+.........+|.
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence            47889999999988 677642 22333333444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=82.17  E-value=0.68  Score=35.46  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             CCCCceeeccccceeeecCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS   21 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~   21 (226)
                      +++|+.|||++|+++|.+|..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCC
T ss_pred             cCCccEEEccCCcccchhHHH
Confidence            467889999999999888875

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=82.16  E-value=3.2  Score=31.82  Aligned_cols=72  Identities=25%  Similarity=0.400  Sum_probs=38.8

Q ss_pred             eeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc-----CCCCccccee-e--EEEeCCeEEEE
Q 040605          133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-----IRHRNIVKFY-G--FCSHARHSFLV  204 (226)
Q Consensus       133 ~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~-----l~h~nlv~l~-g--~~~~~~~~~lv  204 (226)
                      .++.|....+|+....+| .+++|....    .    ......|..++..     +..|.++.-. |  +....+..+++
T Consensus        39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~----~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l  109 (346)
T 2q83_A           39 VIQGNQMALVWKVHTDSG-AVCLKRIHR----P----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV  109 (346)
T ss_dssp             ECC----CEEEEEEETTE-EEEEEEECS----C----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred             eccccccCcEEEEEeCCC-CEEEEecCC----C----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence            455566788999876555 588888754    1    1223334444433     3334444311 1  11245678999


Q ss_pred             EEccCCCCh
Q 040605          205 YEYLERGSL  213 (226)
Q Consensus       205 ~e~~~~g~L  213 (226)
                      +||+++..+
T Consensus       110 ~~~i~G~~~  118 (346)
T 2q83_A          110 YDWIEGRPF  118 (346)
T ss_dssp             EECCCCBCC
T ss_pred             EEeecCccC
Confidence            999997655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=81.51  E-value=0.82  Score=35.06  Aligned_cols=17  Identities=41%  Similarity=0.536  Sum_probs=12.9

Q ss_pred             CceeeccccceeeecCC
Q 040605            4 LLFIDISYNDLQGLIPN   20 (226)
Q Consensus         4 L~~ldls~N~L~G~iP~   20 (226)
                      |+.|||++|++++.+|.
T Consensus       199 L~~L~Ls~N~l~~~~~~  215 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASV  215 (313)
T ss_dssp             CSEEECCSSEEEECCGG
T ss_pred             ccEEECcCCcccCcCCH
Confidence            77778888888777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=81.19  E-value=0.83  Score=38.45  Aligned_cols=39  Identities=21%  Similarity=0.180  Sum_probs=25.0

Q ss_pred             CCCCceeeccccceeeecCCCccccccCcccccCCCCCCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGS   41 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~~Lcg~   41 (226)
                      |++|+.||||+|+|++ ||....+..+....+.+|. +.+.
T Consensus       485 l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~-l~~~  523 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNR-LQQS  523 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC-CCSS
T ss_pred             CCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCC-CCCC
Confidence            5788999999999998 7743334444444454553 4444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=81.15  E-value=0.98  Score=38.49  Aligned_cols=36  Identities=14%  Similarity=-0.015  Sum_probs=22.2

Q ss_pred             CCCCceeec------cccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDI------SYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldl------s~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      |++|+.|||      ++|++.|.+|... .+.........+|.
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            467888888      5677888888653 23333344444554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=80.92  E-value=1.3  Score=35.60  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      +++|+.|||++|++++..|... .+.......+.+|.
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            4689999999999999888642 23334444444543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=80.74  E-value=1.4  Score=34.10  Aligned_cols=18  Identities=11%  Similarity=0.390  Sum_probs=11.1

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      ++|+.|+|++|+++ .+|.
T Consensus       183 ~~L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCG
T ss_pred             CCCCEEECcCCCcC-cchH
Confidence            45666666666666 5554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=80.62  E-value=1.2  Score=32.36  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGN   35 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN   35 (226)
                      |++|+.|+|++|+|++-.|.. ..+..+....+.+|
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            467888888888885433332 12333333444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=80.43  E-value=1  Score=34.39  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=12.7

Q ss_pred             CCCceeeccccceeeecCC
Q 040605            2 QGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP~   20 (226)
                      ++|+.||||+|++++.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCS
T ss_pred             CCCCEEECCCCCCCccchh
Confidence            5666777777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=80.27  E-value=1.2  Score=30.45  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=25.3

Q ss_pred             CCCceeecccccee-eecCCC-ccccccCcccccCCC
Q 040605            2 QGLLFIDISYNDLQ-GLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         2 ~~L~~ldls~N~L~-G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      +.|+.|++++|+++ |.+|.. ..+.......+.+|.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~   60 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG   60 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC
Confidence            57999999999998 899986 334444445555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=80.25  E-value=0.98  Score=38.50  Aligned_cols=20  Identities=35%  Similarity=0.684  Sum_probs=15.6

Q ss_pred             CCCCceeeccccceeeecCC
Q 040605            1 MQGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~   20 (226)
                      |++|+.||+++|+++|.||.
T Consensus       329 l~~L~~L~L~~N~l~g~ip~  348 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLPA  348 (636)
T ss_dssp             CTTCCEEECCSCCCEEECCC
T ss_pred             CCCCCEEeCcCCcCccchhh
Confidence            46788888888888888883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-22
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-20
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-20
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-20
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-20
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-19
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-19
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-19
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-19
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	9e-19
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-18
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	6e-18
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-17
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-17
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-17
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-17
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-17
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-16
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-16
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-16
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-15
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-15
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-15
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	6e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-14
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-14
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	6e-14
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-13
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	5e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-12
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-11
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-11
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-10
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-07

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            D      +G G  G V   +      +A+K        +    + EF+ E + +  + H
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-----EGSMSEDEFIEEAKVMMNLSH 58

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
             +V+ YG C+  R  F++ EY+  G L
Sbjct: 59  EKLVQLYGVCTKQRPIFIITEYMANGCL 86

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 2e-22
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
           ++      IG+G  G V+     + + +A+K        +    +++F+ E E + K+ H
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSH 59

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
             +V+ YG C       LV+E++E G L
Sbjct: 60  PKLVQLYGVCLEQAPICLVFEFMEHGCL 87

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +        +G G  G V+         +AVK                FLAE   + +++
Sbjct: 12  RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-----QGSMSPDAFLAEANLMKQLQ 66

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           H+ +V+ Y   +     +++ EY+E GSL   L
Sbjct: 67  HQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFL 98

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +DF+    +G G  G V+K    PSG  +A K  H      + A + + + E++ L +  
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECN 62

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
              IV FYG         +  E+++ GSL   L  
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 97

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 4e-20
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            +      IG G  G V   +   G  +AVK   +       A  + FLAE   +T++RH
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRH 59

Query: 186 RNIVKFYGFCSHARHS-FLVYEYLERGSLATNLSN 219
            N+V+  G     +   ++V EY+ +GSL   L +
Sbjct: 60  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 94

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 8e-20
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           ++ +D +  +G G    V  AE   + + +A+K             +     EI  L KI
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIA---KKALEGKEGSMENEIAVLHKI 64

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           +H NIV          H +L+ + +  G L   +  
Sbjct: 65  KHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE 100

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 9e-20
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 125 KNDFDAKY----CIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEA 179
           K+D +  +     IG+G  G+VY A  + + E +A+KK             ++ + E+  
Sbjct: 10  KDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRF 68

Query: 180 LTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           L K+RH N +++ G       ++LV EY    +      +
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVH 108

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           + +D    +G+G  G V++  E  +G     K  ++P P     D+     EI  + ++ 
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP----LDKYTVKNEISIMNQLH 84

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           H  ++  +          L+ E+L  G L   ++ 
Sbjct: 85  HPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAA 119

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 4e-19
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEA 179
           EI            IG+G  G+VYK +      +AVK  +   P  Q    + F  E+  
Sbjct: 4   EIPD--GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGV 57

Query: 180 LTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           L K RH NI+ F G+ +      +V ++ E  SL  +L  
Sbjct: 58  LRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHI 96

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 4e-19
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           +N       +G G  G V +A         +   +AVK      P   + +++  ++E++
Sbjct: 22  RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELK 78

Query: 179 ALTKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
            L+ +  H NIV   G C+    + ++ EY   G L   L
Sbjct: 79  VLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 118

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 82.0 bits (202), Expect = 4e-19
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           + +D    +G G  G V++  E  +G   A K   +P      +D++    EI+ ++ +R
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLR 81

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           H  +V  +          ++YE++  G L   +++
Sbjct: 82  HPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVAD 116

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 5e-19
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +     +  +G G  G V+         +A+K              + FL E + + K+R
Sbjct: 16  RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-----PGTMSPEAFLQEAQVMKKLR 70

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           H  +V+ Y   S     ++V EY+ +GSL
Sbjct: 71  HEKLVQLYAVVSE-EPIYIVTEYMSKGSL 98

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (198), Expect = 9e-19
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           + D   K+ +G G +G VY+         +AVK        +   + +EFL E   + +I
Sbjct: 16  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEI 70

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           +H N+V+  G C+     +++ E++  G+L   L
Sbjct: 71  KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 104

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (196), Expect = 2e-18
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 116 FIYVEIIRAKNDFDAKY---------CIGNGGHGSVYKAELPS----GEFLAVKKFHSPL 162
           F + +   A  +F  +           IG G  G V    L        F+A+K   S  
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 163 PGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
              Q    ++FL+E   + +  H N++   G  + +    ++ E++E GSL
Sbjct: 67  TEKQR---RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL 114

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 2e-18
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 122 IRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAE 176
           I +  D   KY     IG G  G+VY A ++ +G+ +A+++ +      Q   ++  + E
Sbjct: 12  IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL----QQQPKKELIINE 67

Query: 177 IEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           I  + + ++ NIV +          ++V EYL  GSL   ++     E 
Sbjct: 68  ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEG 116

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 77.9 bits (191), Expect = 6e-18
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           + ++    +G GG   V+ A  L     +AVK   + L  D  +    F  E +    + 
Sbjct: 7   DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDP-SFYLRFRREAQNAAALN 65

Query: 185 HRNIVKFYGFCSHARHS----FLVYEYLERGSLATNLSN 219
           H  IV  Y        +    ++V EY++  +L   +  
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT 104

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.0 bits (191), Expect = 9e-18
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 115 KFIYVEIIRAKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIA 168
           K + +E  R  N+ +    IG G  G V++A  P          +AVK        D   
Sbjct: 4   KLLSLEYPR--NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM-- 59

Query: 169 DQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
            Q +F  E   + +  + NIVK  G C+  +   L++EY+  G L   L +
Sbjct: 60  -QADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRS 109

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEF 173
           E+ R          +G G  G VY+              +A+K  +       + ++ EF
Sbjct: 16  EVAR--EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEF 70

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           L E   + +    ++V+  G  S  + + ++ E + RG L + L
Sbjct: 71  LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 114

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
           +   DF     +G G   +V  A EL +    A+K         +         E + ++
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMS 63

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           ++ H   VK Y         +    Y + G L   +
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 99

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
           D++  Y IG G +G   K      G+ L  K+       +   +++  ++E+  L +++H
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEA--EKQMLVSEVNLLRELKH 62

Query: 186 RNIVKFYGFCSHARHS--FLVYEYLERGSLATNLSN 219
            NIV++Y       ++  ++V EY E G LA+ ++ 
Sbjct: 63  PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITK 98

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSG---EFLAVKKFHSPLPGDQIADQKEFLAEIEALTK 182
           ND   +  IG G  G V KA +         A+K+       D   D ++F  E+E L K
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 66

Query: 183 I-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           +  H NI+   G C H  + +L  EY   G+L   L      E 
Sbjct: 67  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLET 110

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 134 IGNGGHGSVYKAEL---PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G G  GSV +           +A+K       G + AD +E + E + + ++ +  IV+
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPYIVR 73

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSN 219
             G C  A    LV E    G L   L  
Sbjct: 74  LIGVC-QAEALMLVMEMAGGGPLHKFLVG 101

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 134 IGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVK 190
           +G+G  G+V K         + +AVK   +    +  A + E LAE   + ++ +  IV+
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVR 72

Query: 191 FYGFCSHARHSFLVYEYLERGSLATNLSND 220
             G C       LV E  E G L   L  +
Sbjct: 73  MIGICEA-ESWMLVMEMAELGPLNKYLQQN 101

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 3e-17
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 125 KNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGD--QIADQKEFLAEI 177
           + + D  Y     +G+G    V K  E  +G   A K           +   +++   E+
Sbjct: 5   QENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREV 64

Query: 178 EALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSLATN 216
             L +I+H N++  +    +     L+ E +  G L   
Sbjct: 65  SILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 103

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 4e-17
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
            D+D    +G G +G V  A    + E +AVK          +   +    EI     + 
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVD---MKRAVDCPENIKKEICINKMLN 61

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSND 220
           H N+VKFYG        +L  EY   G L   +  D
Sbjct: 62  HENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 97

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 4e-17
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
            D      +G+G  G V + E  +       +AVK     +         +F+ E+ A+ 
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMH 66

Query: 182 KIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
            + HRN+++ YG         +V E    GSL
Sbjct: 67  SLDHRNLIRLYGVVLT-PPMKMVTELAPLGSL 97

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
            DF+    +G G  G+VY A    S   LA+K             + +   E+E  + +R
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKA-GVEHQLRREVEIQSHLR 64

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
           H NI++ YG+   A   +L+ EY   G++   L  
Sbjct: 65  HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 99

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G+G  G VYKA+   +    A K   +        + ++++ EI+ L    H NIVK  
Sbjct: 20  LGDGAFGKVYKAQNKETSVLAAAKVIDT----KSEEELEDYMVEIDILASCDHPNIVKLL 75

Query: 193 GFCSHARHSFLVYEYLERGSL 213
               +  + +++ E+   G++
Sbjct: 76  DAFYYENNLWILIEFCAGGAV 96

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 6e-17
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPS------GEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           + + +    +G+G  G V  A             +AVK           ++++  ++E++
Sbjct: 36  RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREALMSELK 92

Query: 179 ALTKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
            +T++  H NIV   G C+ +   +L++EY   G L   L +
Sbjct: 93  MMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRS 134

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           +G G  G V++  E  S +    K         +  DQ     EI  L   RHRNI+  +
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKV-----KGTDQVLVKKEISILNIARHRNILHLH 67

Query: 193 GFCSHARHSFLVYEYLERGSLATNL 217
                     +++E++    +   +
Sbjct: 68  ESFESMEELVMIFEFISGLDIFERI 92

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 134 IGNGGHGSVYKAELP----SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIV 189
           IG G  G VY   L          AVK  +       I +  +FL E   +    H N++
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLN---RITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 190 KFYGFCSHARHS-FLVYEYLERGSL 213
              G C  +  S  +V  Y++ G L
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDL 116

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 3e-16
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 133 CIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
            IG G  G V++ +   GE +AVK F S     +        AEI     +RH NI+ F 
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSS-----REERSWFREAEIYQTVMLRHENILGFI 63

Query: 193 GFCSHARHS----FLVYEYLERGSLATNLSNDAAAEE 225
              +    +    +LV +Y E GSL   L+      E
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVE 100

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (180), Expect = 4e-16
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 3/103 (2%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQ--KEFLAEIEALTK 182
           NDF     IG GG G VY      +G+  A+K         +  +         +  ++ 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 183 IRHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
                IV              + + +  G L  +LS      E
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE 106

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 72.6 bits (177), Expect = 6e-16
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG 193
           IG G +G VYKA+   GE  A+KK       + I      + EI  L +++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGI--PSTTIREISILKELKHSNIVKLYD 67

Query: 194 FCSHARHSFLVYEYLERGSL 213
                +   LV+E+L++   
Sbjct: 68  VIHTKKRLVLVFEHLDQDLK 87

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 120 EIIRAKNDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLA 175
           EI R     +   CIG G  G V++    S       +A+K           + +++FL 
Sbjct: 3   EIQR--ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCK---NCTSDSVREKFLQ 57

Query: 176 EIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           E   + +  H +IVK  G  +     +++ E    G L
Sbjct: 58  EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGEL 94

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-15
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQI 167
           +  F   E+ +   +  A Y     +G+G +G+V  A +  +G  +A+KK + P   +  
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSEL- 59

Query: 168 ADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS------FLVYEYLE 209
              K    E+  L  +RH N++      +           +LV  ++ 
Sbjct: 60  -FAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMG 106

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFH-SPLPGDQIADQKEFLAEIEALTKIRHRNIVKF 191
           +G G   +VYKA    + + +A+KK         +    +  L EI+ L ++ H NI+  
Sbjct: 6   LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65

Query: 192 YGFCSHARHSFLVYEYLERGSL 213
                H  +  LV++++E    
Sbjct: 66  LDAFGHKSNISLVFDFMETDLE 87

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
            DF     +G G  G V+      +G + A+K     +        +    E   L+ + 
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRL-KQVEHTNDERLMLSIVT 62

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLE 209
           H  I++ +G    A+  F++ +Y+E
Sbjct: 63  HPFIIRMWGTFQDAQQIFMIMDYIE 87

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 4e-15
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 126 NDFDAKYCIGNGGHGSVYKAELPSGE-----FLAVKKFHSPLPGDQIADQKEFLAEIEAL 180
           +    +  IG G  G VYK  L +        +A+K       G     + +FL E   +
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK---AGYTEKQRVDFLGEAGIM 63

Query: 181 TKIRHRNIVKFYGFCSHARHSFLVYEYLERGS 212
            +  H NI++  G  S  +   ++ EY+E G+
Sbjct: 64  GQFSHHNIIRLEGVISKYKPMMIITEYMENGA 95

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 6e-15
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 134 IGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G   +VYK     +   +A  +           +++ F  E E L  ++H NIV+FY
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKS--ERQRFKEEAEMLKGLQHPNIVRFY 74

Query: 193 GFCSHA----RHSFLVYEYLERGSLATNLSN 219
                     +   LV E +  G+L T L  
Sbjct: 75  DSWESTVKGKKCIVLVTELMTSGTLKTYLKR 105

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-I 183
            DF     +G G  G V+ AE   + +F A+K     +      D +  + E   L+   
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAW 60

Query: 184 RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
            H  +   +       + F V EYL  G L  ++ +
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS 96

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 125 KNDFDAKYCIGNGGHGSVYKAELPS--------GEFLAVKKFHSPLPGDQIADQKEFLAE 176
           ++       +G G  G V  AE              +AVK   S        D  + ++E
Sbjct: 12  RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK---DLSDLISE 68

Query: 177 IEALTKI-RHRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
           +E +  I +H+NI+   G C+     +++ EY  +G+L   L
Sbjct: 69  MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 110

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKE-----FLAEIEAL 180
           +++ K  +G G    V +    P+ +  AVK       G   A++ +      L E++ L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 181 TKIR-HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
            K+  H NI++           FLV++ +++G L   L+ 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE 103

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 119 VEIIRAKNDFDAKYCIGNGGHGSVYKAE-LPSGEFL----AVKKFHSPLPGDQIADQKEF 173
           + I++   +F     +G+G  G+VYK   +P GE +    A+K+             KE 
Sbjct: 3   LRILKE-TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEI 58

Query: 174 LAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYLERGSL 213
           L E   +  + + ++ +  G C  +    L+ + +  G L
Sbjct: 59  LDEAYVMASVDNPHVCRLLGICLTSTV-QLITQLMPFGCL 97

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 113 KGKFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQI 167
           +  F   E+ +   +   +Y     +G+G +GSV  A    +G  +AVKK   P     I
Sbjct: 1   RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSI 58

Query: 168 ADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----HSFLVYEYLERGS 212
              K    E+  L  ++H N++      + AR     +   +  +L    
Sbjct: 59  IHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGAD 108

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 6e-14
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 134 IGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G V  A +  +   +A+KK     P +     +  L EI+ L + RH NI+   
Sbjct: 16  IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 72

Query: 193 GFCSHARHSFLVYEYL 208
                     +   YL
Sbjct: 73  DIIRAPTIEQMKDVYL 88

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 6e-14
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 127 DFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
           +F     IG G +G VYKA    +GE +A+KK       + +      + EI  L ++ H
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGV--PSTAIREISLLKELNH 60

Query: 186 RNIVKFYGFCSHARHSFLVYEYLERGSL 213
            NIVK           +LV+E+L +   
Sbjct: 61  PNIVKLLDVIHTENKLYLVFEFLHQDLK 88

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           NDFD    +G G  G V       +G + A+K     +   +  +    + E   L   R
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTR 63

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSNDAAAEE 225
           H  +               V EY   G L  +LS +    E
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTE 104

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH 185
            +     IGNG  G VY+A+L  SGE +A+KK           D++    E++ + K+ H
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ--------DKRFKNRELQIMRKLDH 72

Query: 186 RNIVKFYGFCSHA------RHSFLVYEYLERGSLATNLSNDAAAEEL 226
            NIV+   F   +       +  LV +Y+             A + L
Sbjct: 73  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTL 119

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 128 FDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGD--QIADQKEFLAEIEAL 180
            +++Y     +G+GG GSVY    +     +A+K        D  ++ +      E+  L
Sbjct: 2   LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61

Query: 181 TKIR--HRNIVKFYGFCSHARHSFLVYEYLERGSLATNL 217
            K+      +++   +        L+ E  E      + 
Sbjct: 62  KKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDF 100

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 6e-13
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 126 NDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT 181
            +F+    +G G +G V+         +G+  A+K         +    +    E + L 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 182 KIRHR-NIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
            IR    +V  +          L+ +Y+  G L T+LS 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ 122

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 1e-12
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG G +G+V+KA+   + E +A+K+    L  D        L EI  L +++H+NIV+ +
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 193 GFCSHARHSFLVYEYLERGSL 213
                 +   LV+E+ ++   
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLK 88

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-12
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           + ++    IG G  G V+KA    +G+ +A+KK    +  ++       L EI+ L  ++
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL--MENEKEGFPITALREIKILQLLK 67

Query: 185 HRNIVKFYGFCSHA--------RHSFLVYEYLERGSLATNLSN 219
           H N+V     C              +LV+++ E        + 
Sbjct: 68  HENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV 110

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 1e-12
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKF 191
           +G G +G V +     + E  A+K            D  +   E+E   +  +  +IV+ 
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKMLQ---------DCPKARREVELHWRASQCPHIVRI 70

Query: 192 YGFCSHA----RHSFLVYEYLERGSLATNLSN 219
                +     +   +V E L+ G L + + +
Sbjct: 71  VDVYENLYAGRKCLLIVMECLDGGELFSRIQD 102

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 62.6 bits (151), Expect = 3e-12
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           +D+     +G G +  V++A  + + E + VK             +K+   EI+ L  +R
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENLR 87

Query: 185 -HRNIVKFYGFCSH--ARHSFLVYEYLERGSL 213
              NI+          +R   LV+E++     
Sbjct: 88  GGPNIITLADIVKDPVSRTPALVFEHVNNTDF 119

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 5e-12
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 115 KFIYVEIIRAKNDFDAKY----CIGNGGHGSVYKA-ELPSGEFLAVKKFHSPLPGDQIAD 169
           +F  VE+  +      +Y     IG+G  G V  A +      +A+KK   P        
Sbjct: 2   QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT--H 59

Query: 170 QKEFLAEIEALTKIRHRNIVKFYGFCSHARHS------FLVYEYLERGSL 213
            K    E+  +  + H+NI+      +  +        +LV E ++    
Sbjct: 60  AKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLC 109

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 5e-12
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFY 192
           IG+G  G +Y    + +GE +A+K               +   E +    ++    +   
Sbjct: 15  IGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIYKMMQGGVGIPTI 68

Query: 193 GFCSHARHSFLVYEYLERGSL 213
            +C       ++   L   SL
Sbjct: 69  RWCGAEGDYNVMVMELLGPSL 89

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (141), Expect = 6e-11
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 126 NDFDAKYCIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR 184
           + FD    +G G  G V   +   SG   A+K              +  L E   L  + 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKL-KQIEHTLNEKRILQAVN 99

Query: 185 HRNIVKFYGFCSHARHSFLVYEYLERGSLATNLSN 219
              +VK         + ++V EY+  G + ++L  
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 134

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-11
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 125 KNDFDAKYCIGNGGHGSVYKA------ELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIE 178
           ++       +G G  G V +A      +  +   +AVK       G   ++ +  ++E++
Sbjct: 12  RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK---EGATHSEHRALMSELK 68

Query: 179 ALTKIRHR-NIVKFYGFCSHARHS-FLVYEYLERGSLATNLSN 219
            L  I H  N+V   G C+       ++ E+ + G+L+T L +
Sbjct: 69  ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 111

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 1e-10
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 123 RAKNDFDAKYCIGNGGHGSVYKAE--LPSGEFLAVKKFHSPLPGDQIADQ-KEFLAEIEA 179
           RA   ++    IG G +G V+KA      G F+A+K+       + +       +A +  
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 180 LTKIRHRNIVKFYGFCSHARHSFLVYEYL 208
           L    H N+V+ +  C+ +R        L
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTL 92

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 55.6 bits (133), Expect = 7e-10
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 134 IGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRN-IVKF 191
           IG G  G +++   L + + +A+K           +D  +   E      +     I   
Sbjct: 13  IGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNV 66

Query: 192 YGFCSHARHSFLVYEYLERG 211
           Y F     H+ LV + L   
Sbjct: 67  YYFGQEGLHNVLVIDLLGPS 86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MQGLLFIDISYNDLQGLIPNSTAFRNAPLESLKGNKGLCGSVKGLQTC 48
           ++ L  +++S+N+L G IP     +   + +   NK LCGS   L  C
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP--LPAC 312

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 129 DAKY----CIGNGGHGSVYKAE-LPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI 183
           DA+Y     +G G   +V+ A+ + +   +A+K              +    EI+ L ++
Sbjct: 12  DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-----VYTEAAEDEIKLLQRV 66

Query: 184 RHRNIVKFYGFCSHARHSFLVYEY 207
              +  K     ++     L +  
Sbjct: 67  NDADNTKEDSMGANHILKLLDHFN 90

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 134 IGNGGHGSVYKAELPSGEFLAVKKFHSPLPGD------QIADQKEFLAEIEALTKIRHRN 187
           +G G   +V+           VK               +      F        +   R 
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 188 IVKFYGFCSHARHSF----LVYEY 207
           + K  G      +++    ++ E 
Sbjct: 68  LQKLQGLAVPKVYAWEGNAVLMEL 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.79
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.78
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.77
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.77
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.75
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.75
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.75
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.75
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.75
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.75
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.74
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.73
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.73
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.73
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.73
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.73
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.72
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.72
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.72
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.71
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.71
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.7
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.7
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.7
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.69
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.69
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.68
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.68
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.68
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.68
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.67
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.67
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.66
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.65
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.64
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.63
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.62
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.61
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.61
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.61
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.6
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.6
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.59
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.57
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.56
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.51
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.5
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.49
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.48
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.47
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.46
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.46
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.46
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.46
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.44
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.33
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.3
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.23
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.83
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.76
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	94.45
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	93.74
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	93.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	91.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	89.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	89.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	85.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	83.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	83.83
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	81.54

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.1e-20  Score=138.37  Aligned_cols=91  Identities=25%  Similarity=0.470  Sum_probs=80.6

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||+||+|.+.++..||||+++.. ..    ..++|.+|+.++++++|||||+++|+|..++..++||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~   79 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AM----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   79 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SS----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cC----cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEE
Confidence            467778899999999999999988889999998751 11    3478999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++++..+
T Consensus        80 E~~~~g~L~~~l~~~~   95 (263)
T d1sm2a_          80 EFMEHGCLSDYLRTQR   95 (263)
T ss_dssp             ECCTTCBHHHHHHTTT
T ss_pred             EecCCCcHHHHhhccc
Confidence            9999999999987643

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=135.06  Aligned_cols=91  Identities=24%  Similarity=0.456  Sum_probs=80.9

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||+|..+++..||||+++.. ..    ..++|.+|+.++++++|||||+++|+|.+++..++||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-~~----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~   78 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-SS----CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-cC----CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence            578888899999999999999988889999999752 21    3478999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.+++....
T Consensus        79 Ey~~~g~l~~~~~~~~   94 (258)
T d1k2pa_          79 EYMANGCLLNYLREMR   94 (258)
T ss_dssp             ECCTTEEHHHHHHSGG
T ss_pred             EccCCCcHHHhhhccc
Confidence            9999999999977543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.1e-19  Score=138.42  Aligned_cols=92  Identities=25%  Similarity=0.494  Sum_probs=75.4

Q ss_pred             CccccceeccCCceeEEEEEcC-CCC---eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGE---FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~---~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      +|...+.||+|+||+||+|... ++.   .||||.+...   ......+.|.+|+.+|++++|||||+++|+|..++..+
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~  103 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG---YTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVM  103 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSS---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcc---cCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            3445679999999999999764 332   5899988642   22335678999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      +|||||++|+|.++++...
T Consensus       104 iv~Ey~~~g~L~~~~~~~~  122 (299)
T d1jpaa_         104 IITEFMENGSLDSFLRQND  122 (299)
T ss_dssp             EEEECCTTEEHHHHHHTTT
T ss_pred             EEEEecCCCcceeeecccc
Confidence            9999999999999887643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4e-19  Score=134.91  Aligned_cols=94  Identities=28%  Similarity=0.360  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++.....   ...+.+.+|+.+|++++|||||++++++.+++..+||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~---~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc---hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            4678888999999999999976 47999999998652211   1346799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      |||+++|+|.++|.....
T Consensus        82 mEy~~gg~L~~~l~~~~~   99 (271)
T d1nvra_          82 LEYCSGGELFDRIEPDIG   99 (271)
T ss_dssp             EECCTTEEGGGGSBTTTB
T ss_pred             EeccCCCcHHHHHhcCCC
Confidence            999999999999986543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.6e-19  Score=137.48  Aligned_cols=94  Identities=28%  Similarity=0.422  Sum_probs=81.7

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEE
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      .++|...+.||+|+||+||+|.. .+|..||+|+++....   ......+.+|+.+|++++|||||++++++.+++..++
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~i   81 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK---PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   81 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC---TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            46788889999999999999976 4789999999975222   2245789999999999999999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      |||||++|+|.++|++.+
T Consensus        82 VmEy~~gg~L~~~l~~~~   99 (322)
T d1s9ja_          82 CMEHMDGGSLDQVLKKAG   99 (322)
T ss_dssp             EEECCTTEEHHHHHHHHS
T ss_pred             EEEcCCCCcHHHHHhhcC
Confidence            999999999999997543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=133.26  Aligned_cols=96  Identities=19%  Similarity=0.283  Sum_probs=81.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCC--CCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLP--GDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~--~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~  202 (226)
                      +.|...+.||+|+||+||+|.. .+|..||||.+.....  .......+.|.+|+.+|++++|||||++++++.+.+..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            4578888999999999999976 4799999999864211  111124678999999999999999999999999999999


Q ss_pred             EEEEccCCCChhhhccCCc
Q 040605          203 LVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~~~  221 (226)
                      ||||||++|+|.++|...+
T Consensus        90 iv~E~~~gg~L~~~i~~~~  108 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE  108 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS
T ss_pred             EEEEcCCCccccchhcccc
Confidence            9999999999999997543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.6e-19  Score=134.52  Aligned_cols=90  Identities=27%  Similarity=0.484  Sum_probs=78.9

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|... ++..||||+++.. . .   ..++|.+|+.+|++++|||||+++|+|.+.+..++|
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~-~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-T-M---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   91 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-C-S---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-c-c---hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEE
Confidence            46777889999999999999775 6889999998652 1 1   357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++|+..
T Consensus        92 ~E~~~~g~l~~~l~~~  107 (287)
T d1opja_          92 TEFMTYGNLLDYLREC  107 (287)
T ss_dssp             EECCTTCBHHHHHHHS
T ss_pred             eecccCcchHHHhhhc
Confidence            9999999999998743

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=132.01  Aligned_cols=89  Identities=24%  Similarity=0.438  Sum_probs=76.6

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||+|.++++..||||+++.. ..    ..+.|.+|+.+|.+++|||||+++|++. .+..++||
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~   86 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SM----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT   86 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SS----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cC----CHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEE
Confidence            457777889999999999999988889999999752 11    3578999999999999999999999875 45679999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|.++++..
T Consensus        87 Ey~~~g~L~~~~~~~  101 (272)
T d1qpca_          87 EYMENGSLVDFLKTP  101 (272)
T ss_dssp             ECCTTCBHHHHTTSH
T ss_pred             EeCCCCcHHHHHhhc
Confidence            999999999988754

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=132.72  Aligned_cols=91  Identities=23%  Similarity=0.343  Sum_probs=74.0

Q ss_pred             cCccccce-eccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYC-IGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~-lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      +++...+. ||+|+||.||+|..+   ++..||||+++...   .....+.|.+|+++|.+++|||||+++|+|.. +..
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~   83 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL   83 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc---CHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeE
Confidence            34555554 999999999999763   35579999997522   22356789999999999999999999999864 568


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++|||||++|+|.+++...
T Consensus        84 ~lvmE~~~~g~L~~~l~~~  102 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVGK  102 (285)
T ss_dssp             EEEEECCTTEEHHHHHTTC
T ss_pred             EEEEEeCCCCcHHHHhhcc
Confidence            9999999999999998754

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.1e-19  Score=133.33  Aligned_cols=95  Identities=27%  Similarity=0.484  Sum_probs=80.0

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++... +++.||+|.+... ...+....+.+.+|+.++++++|||||++++++.+++..++|
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKA-QLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchH-HccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            46788889999999999999764 7899999998531 111112357799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.++|...+
T Consensus        85 mEy~~~g~L~~~l~~~~  101 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLS  101 (263)
T ss_dssp             EECCTTCBHHHHHHHHS
T ss_pred             EeecCCCcHHHHHhhcC
Confidence            99999999999997544

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.9e-18  Score=133.49  Aligned_cols=94  Identities=22%  Similarity=0.346  Sum_probs=76.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||+||++... +|+.||||.+.......   ....+.+|+.+|++++|||||++++++.+.+..+||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~---~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG---KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            45788889999999999999764 78999999997522111   245688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      |||+++|+|.++|...+.
T Consensus        86 mE~~~gg~L~~~l~~~~~  103 (307)
T d1a06a_          86 MQLVSGGELFDRIVEKGF  103 (307)
T ss_dssp             ECCCCSCBHHHHHHTCSC
T ss_pred             EeccCCCcHHHhhhcccC
Confidence            999999999999976543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.5e-18  Score=129.89  Aligned_cols=91  Identities=23%  Similarity=0.392  Sum_probs=79.3

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      .+|...+.||+|+||+||+|.. .+|+.||||+++.. ...   ..+.+.+|+.+|++++|||||++++++...+..++|
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~-~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   95 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ-QQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGG-GCS---CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecc-cCh---HHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEE
Confidence            4588888999999999999975 47999999998652 111   357799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.+++.+.
T Consensus        96 mEy~~gg~L~~~~~~~  111 (293)
T d1yhwa1          96 MEYLAGGSLTDVVTET  111 (293)
T ss_dssp             EECCTTCBHHHHHHHS
T ss_pred             EEecCCCcHHHHhhcc
Confidence            9999999999987653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.9e-18  Score=129.31  Aligned_cols=92  Identities=27%  Similarity=0.515  Sum_probs=76.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe--CCeEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH--ARHSF  202 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~--~~~~~  202 (226)
                      ++|...+.||+|+||.||++.. .+|+.||||.+... . .+....+.+.+|+.+|.+++|||||++++++..  .+..+
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~-~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~   81 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYG-S-MTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCT-T-SCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChh-h-CCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence            5688889999999999999975 47899999999752 2 222345779999999999999999999999864  45689


Q ss_pred             EEEEccCCCChhhhccC
Q 040605          203 LVYEYLERGSLATNLSN  219 (226)
Q Consensus       203 lv~e~~~~g~L~~~l~~  219 (226)
                      +||||+++|+|.+++..
T Consensus        82 ivmEy~~~g~L~~~i~~   98 (269)
T d2java1          82 IVMEYCEGGDLASVITK   98 (269)
T ss_dssp             EEEECCTTEEHHHHHHH
T ss_pred             EEEecCCCCcHHHHHHh
Confidence            99999999999999864

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.2e-18  Score=130.33  Aligned_cols=88  Identities=27%  Similarity=0.394  Sum_probs=70.9

Q ss_pred             ceeccCCceeEEEEEcC---CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          132 YCIGNGGHGSVYKAELP---SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~---~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      +.||+|+||+||+|.++   .+..||||+++...  .+....+.|.+|+.+|++++|||||+++|+|.. +..+|||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA   89 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhh--CCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcC
Confidence            57999999999999764   34689999996522  222345789999999999999999999999864 4578999999


Q ss_pred             CCCChhhhccCCcc
Q 040605          209 ERGSLATNLSNDAA  222 (226)
Q Consensus       209 ~~g~L~~~l~~~~~  222 (226)
                      ++|+|.++++..+.
T Consensus        90 ~~g~L~~~l~~~~~  103 (277)
T d1xbba_          90 ELGPLNKYLQQNRH  103 (277)
T ss_dssp             TTEEHHHHHHHCTT
T ss_pred             CCCcHHHHHhhccC
Confidence            99999999986543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-18  Score=132.29  Aligned_cols=90  Identities=21%  Similarity=0.378  Sum_probs=78.4

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.|...+.||+|+||.||+|.. .+|..||||.++.. .   ....+.|.+|+++|++++|||||++++++.+++..++|
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lv   87 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK-S---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL   87 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-S---SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC-C---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEE
Confidence            4567778899999999999976 47899999999752 1   12456799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccC
Q 040605          205 YEYLERGSLATNLSN  219 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~  219 (226)
                      |||+++|+|.+++.+
T Consensus        88 mEy~~~g~L~~~~~~  102 (288)
T d2jfla1          88 IEFCAGGAVDAVMLE  102 (288)
T ss_dssp             EECCTTEEHHHHHHH
T ss_pred             EecCCCCcHHHHHHh
Confidence            999999999999764

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.73  E-value=6.1e-18  Score=132.77  Aligned_cols=91  Identities=21%  Similarity=0.453  Sum_probs=80.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||+|.. .+|..||||++...    .....+.+.+|+.+|.+++|||||++++++...+..+||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~----~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCC----SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEccc----chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4688888999999999999976 47899999998651    223457899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.++|.+.
T Consensus       102 mE~~~gg~L~~~l~~~  117 (350)
T d1koaa2         102 YEFMSGGELFEKVADE  117 (350)
T ss_dssp             ECCCCSCBHHHHHTCT
T ss_pred             EEcCCCCCHHHHHHhh
Confidence            9999999999999654

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.1e-18  Score=131.64  Aligned_cols=94  Identities=24%  Similarity=0.341  Sum_probs=79.4

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      .|...+.||+|+||.||+|.. .+|..||||+++. ....+....+.+.+|+.+|++++|||||++++++.+++..++||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~-~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY-SGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-CSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEch-hhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            478888999999999999975 5788999999975 22233334577999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      |||++|+|..++...+
T Consensus        95 E~~~~g~l~~~~~~~~  110 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKK  110 (309)
T ss_dssp             ECCSEEHHHHHHHHTS
T ss_pred             EecCCCchHHHHHhCC
Confidence            9999999987765443

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.3e-18  Score=129.03  Aligned_cols=91  Identities=27%  Similarity=0.378  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||+|.+.  ..||||+++...  .+....+.|.+|+.+|.+++|||||+++|++.. +..++||
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~   82 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTA--PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVT   82 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSS--CCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             ccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEccc--CCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEE
Confidence            56777889999999999999874  359999997522  122356889999999999999999999998754 5689999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+++|+|.++|+..+
T Consensus        83 Ey~~~g~L~~~l~~~~   98 (276)
T d1uwha_          83 QWCEGSSLYHHLHIIE   98 (276)
T ss_dssp             ECCCEEEHHHHHHTSC
T ss_pred             ecCCCCCHHHHHhhcc
Confidence            9999999999997543

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-18  Score=133.81  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=80.0

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|.. .+|..||||.+... ...+....+.+.+|+.+|++++||||+++++++.+.+..++|
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKR-HIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehH-HccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            5688889999999999999976 47899999998631 101112356799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|.+++...+
T Consensus        87 mEy~~gg~L~~~~~~~~  103 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIG  103 (288)
T ss_dssp             ECCCTTEEHHHHHHHHS
T ss_pred             EEccCCCCHHHhhhccC
Confidence            99999999999987544

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=129.86  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|... +|+.||||.++..     ......+.+|+.+|..++|||||++++++.+.+..+||
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~-----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-----GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCC-----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            56788889999999999999764 7889999999651     12345688999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      ||||++|+|.++|+..+
T Consensus        80 mE~~~gg~L~~~i~~~~   96 (321)
T d1tkia_          80 FEFISGLDIFERINTSA   96 (321)
T ss_dssp             ECCCCCCBHHHHHTSSS
T ss_pred             EecCCCCcHHHHHHhcC
Confidence            99999999999997653

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-18  Score=130.40  Aligned_cols=88  Identities=30%  Similarity=0.517  Sum_probs=73.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~lv  204 (226)
                      ++|...+.||+|+||.||+|.+ .|..||||+++..   .   ..+.|.+|++++++++|||||+++|+|.. .+..++|
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~---~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv   79 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND---A---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   79 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC---C-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH---H---HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEE
Confidence            4566778899999999999988 5789999999651   1   34789999999999999999999999965 4568999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      |||+++|+|.++|+..
T Consensus        80 ~ey~~~g~L~~~l~~~   95 (262)
T d1byga_          80 TEYMAKGSLVDYLRSR   95 (262)
T ss_dssp             ECCCTTEEHHHHHHHH
T ss_pred             EeccCCCCHHHHHHhc
Confidence            9999999999999754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.71  E-value=2.1e-17  Score=129.78  Aligned_cols=91  Identities=19%  Similarity=0.360  Sum_probs=79.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||+|.. .+|..||||.++..    .....+.+.+|+.+|++++|||||++++++..++..+||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP----YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCc----chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4688888999999999999975 47999999998752    222456789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCC
Q 040605          205 YEYLERGSLATNLSND  220 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~  220 (226)
                      ||||++|+|.+++...
T Consensus       105 mE~~~gg~L~~~~~~~  120 (352)
T d1koba_         105 LEFLSGGELFDRIAAE  120 (352)
T ss_dssp             EECCCCCBHHHHTTCT
T ss_pred             EEcCCCChHHHHHHhc
Confidence            9999999999987654

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.7e-18  Score=130.57  Aligned_cols=92  Identities=33%  Similarity=0.559  Sum_probs=75.7

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC--eEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE--FLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~--~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|... +|.  .||||+++.....   ...+.|.+|+++|.++ +|||||+++|+|...+..
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK---DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccCh---HHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            46777889999999999999775 444  5788888642221   2356799999999998 799999999999999999


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.++|+..
T Consensus        87 ~iV~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTT
T ss_pred             EEEEEecCCCcHHHHHhhc
Confidence            9999999999999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=126.83  Aligned_cols=91  Identities=26%  Similarity=0.333  Sum_probs=74.3

Q ss_pred             cccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe----CCeEEE
Q 040605          129 DAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH----ARHSFL  203 (226)
Q Consensus       129 ~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~----~~~~~l  203 (226)
                      .....||+|+||+||+|... ++..||+|.+... . ......+.|.+|+++|++++|||||++++++..    .+..++
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~-~-~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR-K-LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGG-G-SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchh-h-CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            34457999999999999764 7889999998652 1 122345789999999999999999999999865    345789


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      ||||+++|+|.++|++..
T Consensus        90 vmE~~~~g~L~~~l~~~~  107 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRFK  107 (270)
T ss_dssp             EEECCCSCBHHHHHHHHS
T ss_pred             EEeCCCCCcHHHHHhccc
Confidence            999999999999997543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=127.29  Aligned_cols=89  Identities=25%  Similarity=0.481  Sum_probs=77.2

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||.||+|..+++..||||+++.. . .   ..+.|.+|+.+|.+++|+|||+++|+|. .+..++||
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~-~---~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~   90 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-T-M---SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT   90 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-S-S---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-c-C---CHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEE
Confidence            568888899999999999999988889999999652 1 1   3478999999999999999999999985 45689999


Q ss_pred             EccCCCChhhhccCC
Q 040605          206 EYLERGSLATNLSND  220 (226)
Q Consensus       206 e~~~~g~L~~~l~~~  220 (226)
                      ||+++|+|..+++..
T Consensus        91 Ey~~~g~l~~~~~~~  105 (285)
T d1fmka3          91 EYMSKGSLLDFLKGE  105 (285)
T ss_dssp             CCCTTCBHHHHHSHH
T ss_pred             EecCCCchhhhhhhc
Confidence            999999999988754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1e-17  Score=129.15  Aligned_cols=98  Identities=27%  Similarity=0.456  Sum_probs=82.9

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceee
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYG  193 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g  193 (226)
                      ++..+.++|...+.||+|+||+||+|+..      ++..||||+++..   ......+.|.+|+.+|++++|||++++++
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~---~~~~~~~~~~~E~~il~~l~h~niv~~~~   83 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDNPNIVKLLG   83 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChh---cChHHHHHHHHHHHHHHhcCCCCccccee
Confidence            34445678999999999999999999753      4578999998652   22234678999999999999999999999


Q ss_pred             EEEeCCeEEEEEEccCCCChhhhccCC
Q 040605          194 FCSHARHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       194 ~~~~~~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      +|...+..+++|||+++|+|.++|+..
T Consensus        84 ~~~~~~~~~~v~e~~~~g~L~~~l~~~  110 (301)
T d1lufa_          84 VCAVGKPMCLLFEYMAYGDLNEFLRSM  110 (301)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHT
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHhc
Confidence            999999999999999999999999754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-17  Score=126.12  Aligned_cols=92  Identities=26%  Similarity=0.443  Sum_probs=77.4

Q ss_pred             cCccccceeccCCceeEEEEEcCCC-----CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSG-----EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g-----~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      +.|+..++||+|+||.||+|.++..     ..||||+++..   ........|.+|+.++.+++|||||+++|++...+.
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~   83 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG---YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP   83 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcc---cChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCc
Confidence            4578889999999999999977532     37999999652   222345679999999999999999999999999999


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++||||+++|+|.+++...
T Consensus        84 ~~~v~e~~~~~~l~~~~~~~  103 (283)
T d1mqba_          84 MMIITEYMENGALDKFLREK  103 (283)
T ss_dssp             EEEEEECCTTEEHHHHHHHT
T ss_pred             eEEEEEecccCcchhhhhcc
Confidence            99999999999999987654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.69  E-value=2.1e-17  Score=125.68  Aligned_cols=96  Identities=23%  Similarity=0.364  Sum_probs=79.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCch-----hhHHHHHHHHHHHhcCC-CCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQI-----ADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~-----~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||+||++.. .+|+.+|||+++........     ...+.+.+|+.+|.+++ ||||+++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4688889999999999999975 47899999999752221111     12346889999999997 99999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..+||||||++|+|.++|+...
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~  105 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV  105 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS
T ss_pred             cceEEEEEcCCCchHHHHHHhcC
Confidence            99999999999999999997544

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=130.74  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=81.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||||+++.. ........+.+.+|+.+|++++||||+++++++.+.+..++|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~-~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKE-VIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchh-hccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            5688889999999999999975 58999999998641 101112357789999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCcc
Q 040605          205 YEYLERGSLATNLSNDAA  222 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~~  222 (226)
                      ||||++|+|.++++..+.
T Consensus        84 ~ey~~gg~L~~~~~~~~~  101 (337)
T d1o6la_          84 MEYANGGELFFHLSRERV  101 (337)
T ss_dssp             EECCTTCBHHHHHHHHSC
T ss_pred             eeccCCCchhhhhhcccC
Confidence            999999999999886543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=3.3e-17  Score=124.74  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----e
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----H  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----~  200 (226)
                      ++|...+.||+|+||.||++.. .+|+.||||.++.. ...+....+.|.+|+.+++.++|||||++++++...+    .
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRAD-LARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECST-TTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchh-hccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            5688888999999999999975 57999999999762 2233344578999999999999999999999987643    3


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++||||+++|+|.+++...+
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~  106 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG  106 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC
T ss_pred             EEEEEECCCCCEehhhhcccC
Confidence            789999999999999887544

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.3e-17  Score=128.38  Aligned_cols=94  Identities=23%  Similarity=0.469  Sum_probs=76.8

Q ss_pred             hcCccccceeccCCceeEEEEEcCC-C-----CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELPS-G-----EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~~-g-----~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||+||+|.... +     ..||||.+.....   ......|.+|+.+|.++ +|||||+++|++..
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~  112 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGACTL  112 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC---HHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee
Confidence            3568888999999999999997632 2     3699999864222   22346899999999998 89999999999999


Q ss_pred             CCeEEEEEEccCCCChhhhccCCc
Q 040605          198 ARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .+..++|||||++|+|.++|+..+
T Consensus       113 ~~~~~lv~Ey~~~g~L~~~l~~~~  136 (325)
T d1rjba_         113 SGPIYLIFEYCCYGDLLNYLRSKR  136 (325)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTT
T ss_pred             CCeEEEEEEcCCCCcHHHHHHhcc
Confidence            999999999999999999998653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.9e-17  Score=123.95  Aligned_cols=88  Identities=26%  Similarity=0.493  Sum_probs=72.9

Q ss_pred             cceeccCCceeEEEEEcCCC----CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe-CCeEEEEE
Q 040605          131 KYCIGNGGHGSVYKAELPSG----EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH-ARHSFLVY  205 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~~g----~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~-~~~~~lv~  205 (226)
                      .++||+|+||+||+|.+.+.    ..||||+++..   .+....++|.+|+++|++++||||++++|+|.. ++..++||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI---TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCC---CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc---cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            45799999999999987432    26899998641   233356889999999999999999999999876 46889999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      |||++|+|.++++...
T Consensus       109 E~~~~g~l~~~~~~~~  124 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNET  124 (311)
T ss_dssp             ECCTTCBHHHHHHCTT
T ss_pred             EEeecCchhhhhcccc
Confidence            9999999999988654

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.4e-17  Score=129.01  Aligned_cols=95  Identities=22%  Similarity=0.379  Sum_probs=80.1

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||++.. .+|..||||+++.. ........+.+.+|+.+|+.++|||||++++++.+++..++|
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~-~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKE-IVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchH-HccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            4678888999999999999976 47999999998631 101112357899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      |||+++|+|..++....
T Consensus        83 mE~~~gg~l~~~~~~~~   99 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQ   99 (316)
T ss_dssp             ECCCCSCBHHHHHHHTS
T ss_pred             eeecCCccccccccccc
Confidence            99999999999887544

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.2e-17  Score=125.95  Aligned_cols=92  Identities=21%  Similarity=0.426  Sum_probs=78.7

Q ss_pred             cCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~  199 (226)
                      ++|...+.||+|+||.||+|.+.      ++..||||+++..   ........|.+|+.++.+++|||||+++|+|...+
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~---~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT---SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcc---cChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            56777889999999999999652      3578999999652   22334567999999999999999999999999999


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++||||+++|+|.++++..
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~  117 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSL  117 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHH
T ss_pred             ceeEEEeecCCCCHHHHHHhc
Confidence            999999999999999998754

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.1e-17  Score=128.28  Aligned_cols=95  Identities=23%  Similarity=0.374  Sum_probs=77.6

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHh-cCCCCcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALT-KIRHRNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~-~l~h~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||+||+|... +|+.||||+++... .......+.+..|..++. .++|||||++++++..++..+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~-~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDV-VLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHH-HHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhh-ccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            46888899999999999999764 78999999996411 001113466778887765 6899999999999999999999


Q ss_pred             EEEccCCCChhhhccCCc
Q 040605          204 VYEYLERGSLATNLSNDA  221 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~~  221 (226)
                      |||||++|+|.++|+...
T Consensus        81 vmEy~~~g~L~~~i~~~~   98 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSCH   98 (320)
T ss_dssp             EEECCTTCBHHHHHHHHS
T ss_pred             EEeecCCCcHHHHhhccC
Confidence            999999999999997544

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.4e-17  Score=125.53  Aligned_cols=93  Identities=24%  Similarity=0.436  Sum_probs=79.1

Q ss_pred             cCccccceeccCCceeEEEEEc------CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEeC
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL------PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSHA  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~------~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~~  198 (226)
                      ++|...+.||+|+||.||+|++      .++..||||+++..   ........|.+|+.++.++ +|||||+++|+|...
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~---~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~   99 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS---AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcc---cCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC
Confidence            5677788999999999999975      34568999999752   2233557899999999998 699999999999999


Q ss_pred             CeEEEEEEccCCCChhhhccCCc
Q 040605          199 RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      +..+++||||++|+|.++|+...
T Consensus       100 ~~~~lvmE~~~~g~l~~~l~~~~  122 (311)
T d1t46a_         100 GPTLVITEYCCYGDLLNFLRRKR  122 (311)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTT
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcc
Confidence            99999999999999999998643

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-16  Score=122.21  Aligned_cols=87  Identities=31%  Similarity=0.486  Sum_probs=69.7

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHH--HHHHhcCCCCcccceeeEEEeCC----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAE--IEALTKIRHRNIVKFYGFCSHAR----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e--~~~l~~l~h~nlv~l~g~~~~~~----  199 (226)
                      .++...+.||+|+||.||+|++ +|..||||+++.    .   ..+.+.+|  +..+..++|||||+++|+|...+    
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~----~---~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~   74 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS----R---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECG----G---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECc----c---chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcce
Confidence            3466677899999999999987 688999999864    1   23444444  44556789999999999997653    


Q ss_pred             eEEEEEEccCCCChhhhccCC
Q 040605          200 HSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ..++|||||++|+|.++|++.
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~   95 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRY   95 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC
T ss_pred             EEEEEEecccCCCHHHHHhcC
Confidence            578999999999999999864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=121.71  Aligned_cols=93  Identities=28%  Similarity=0.429  Sum_probs=67.7

Q ss_pred             cCccccceeccCCceeEEEEEcC--CC--CeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--SG--EFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--~g--~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|.+.  ++  ..||||++.... ..+....++|.+|+.+|++++|||||+++|+|.+ +..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~-~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhh-cCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            45777888999999999999753  33  378999986522 2222345789999999999999999999999965 467


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        86 ~lv~e~~~~~~l~~~~~~~  104 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKH  104 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             heeeeeecCcchhhhhhcc
Confidence            8999999999999987643

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1e-16  Score=126.39  Aligned_cols=95  Identities=21%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHH---HHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFL---AEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~---~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|... +|..||||++... ..........+.   .|+.+++.++|||||++++++...+..
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~-~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKK-RIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchH-HcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            57888899999999999999764 7999999998531 000011122333   447778888999999999999999999


Q ss_pred             EEEEEccCCCChhhhccCCc
Q 040605          202 FLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~~  221 (226)
                      ++||||+++|+|.++|....
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~  102 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHG  102 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHC
T ss_pred             EEEEEecCCCcHHHHHHhcc
Confidence            99999999999999997543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-16  Score=118.43  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=74.6

Q ss_pred             cCccccceeccCCceeEEEEEcCC----CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPS----GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~----g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~  201 (226)
                      ++|...+.||+|+||.||+|....    +..||||.++..   ......+.|.+|+.+|++++|||||+++|++. .+..
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~   82 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC---TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   82 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT---TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeE
Confidence            567778899999999999997642    346899988642   22234578999999999999999999999985 5678


Q ss_pred             EEEEEccCCCChhhhccCC
Q 040605          202 FLVYEYLERGSLATNLSND  220 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~~~  220 (226)
                      ++||||+++|+|.+++...
T Consensus        83 ~iv~E~~~~g~l~~~~~~~  101 (273)
T d1mp8a_          83 WIIMELCTLGELRSFLQVR  101 (273)
T ss_dssp             EEEEECCTTEEHHHHHHHT
T ss_pred             EEEEEeccCCcHHhhhhcc
Confidence            9999999999999987643

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-16  Score=124.03  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=79.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||.||++.. .+|..||||++... ...+....+.+.+|+.+|+.++|||||++++++...+..++|
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~-~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ-KVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH-HHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchH-HccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            4688888999999999999976 47999999998531 101112356799999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+++|+|.+++...+
T Consensus       120 ~e~~~~g~l~~~l~~~~  136 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             EECCTTCBHHHHHHHHC
T ss_pred             cccccccchhhhHhhcC
Confidence            99999999999987543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.61  E-value=4.3e-16  Score=118.99  Aligned_cols=94  Identities=28%  Similarity=0.373  Sum_probs=79.2

Q ss_pred             cCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVY  205 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~  205 (226)
                      ++|...+.||+|+||+||+|..++|..||||+++...  .+....+.+.+|+.+|++++|||||++++++...+..++++
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhh--cChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence            4677788999999999999988899999999996521  12223578999999999999999999999999999999999


Q ss_pred             EccCCCChhhhccCCc
Q 040605          206 EYLERGSLATNLSNDA  221 (226)
Q Consensus       206 e~~~~g~L~~~l~~~~  221 (226)
                      ||+.++.+..+.+..+
T Consensus        80 e~~~~~~~~~~~~~~~   95 (286)
T d1ob3a_          80 EHLDQDLKKLLDVCEG   95 (286)
T ss_dssp             ECCSEEHHHHHHTSTT
T ss_pred             EeehhhhHHHHHhhcC
Confidence            9999877776665443

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.9e-16  Score=118.91  Aligned_cols=91  Identities=22%  Similarity=0.427  Sum_probs=72.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCC----eEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGE----FLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~----~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~  200 (226)
                      .+|...+.||+|+||+||+|... +|+    .||+|+++....   ....+.|.+|+.++++++|||||+++|+|.++ .
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~   84 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTS-T   84 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-S
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-C
Confidence            45888899999999999999764 444    689999864221   22467899999999999999999999999864 5


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .++++||+++|+|.+++...
T Consensus        85 ~~~v~e~~~~~~l~~~~~~~  104 (317)
T d1xkka_          85 VQLITQLMPFGCLLDYVREH  104 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHT
T ss_pred             eeEEEEeccCCccccccccc
Confidence            67889999999999988754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-16  Score=120.91  Aligned_cols=93  Identities=26%  Similarity=0.442  Sum_probs=72.6

Q ss_pred             cCccccceeccCCceeEEEEEcC--------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP--------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCS  196 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~--------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~  196 (226)
                      ++|...+.||+|+||.||+|+..        ++..||||+++..   .......++.+|...+.++ +|||||+++++|.
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~   89 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD---ATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   89 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcc---cChHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence            46777789999999999999652        2347999999652   2223467899999999888 8999999999999


Q ss_pred             eCCeEEEEEEccCCCChhhhccCCc
Q 040605          197 HARHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       197 ~~~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++..++||||+++|+|.++|+..+
T Consensus        90 ~~~~~~~v~e~~~~g~l~~~i~~~~  114 (299)
T d1fgka_          90 QDGPLYVIVEYASKGNLREYLQARR  114 (299)
T ss_dssp             SSSSCEEEECCCTTCBHHHHHHTTS
T ss_pred             cCCeEEEEEEccCCCcHHHHHHhhc
Confidence            9999999999999999999997654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.2e-16  Score=118.86  Aligned_cols=91  Identities=23%  Similarity=0.337  Sum_probs=70.5

Q ss_pred             cceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCC-chhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEEEEcc
Q 040605          131 KYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGD-QIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLVYEYL  208 (226)
Q Consensus       131 ~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~-~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv~e~~  208 (226)
                      .++||+|+||+||+|... +|+.||||+++...... .....+.+.+|+.+|++++|||||++++++...+..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            357999999999999864 78999999986521111 1112356899999999999999999999999999999999999


Q ss_pred             CCCChhhhccCCc
Q 040605          209 ERGSLATNLSNDA  221 (226)
Q Consensus       209 ~~g~L~~~l~~~~  221 (226)
                      ++|++..++....
T Consensus        83 ~~~~~~~~~~~~~   95 (299)
T d1ua2a_          83 ETDLEVIIKDNSL   95 (299)
T ss_dssp             SEEHHHHHTTCCS
T ss_pred             cchHHhhhhhccc
Confidence            9887777665443

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=117.20  Aligned_cols=89  Identities=30%  Similarity=0.468  Sum_probs=72.5

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++...  ......+.+.+|+.+|++++|||||++++++.+++..++|
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT--ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhh--cChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            5788889999999999999975 579999999996521  1112346899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhc
Q 040605          205 YEYLERGSLATNL  217 (226)
Q Consensus       205 ~e~~~~g~L~~~l  217 (226)
                      |||+.+ ++.+++
T Consensus        80 ~e~~~~-~~~~~~   91 (298)
T d1gz8a_          80 FEFLHQ-DLKKFM   91 (298)
T ss_dssp             EECCSE-EHHHHH
T ss_pred             EeecCC-chhhhh
Confidence            999985 455544

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=118.38  Aligned_cols=86  Identities=20%  Similarity=0.297  Sum_probs=71.1

Q ss_pred             cCcccc-ceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc-CCCCcccceeeEEEe----C
Q 040605          126 NDFDAK-YCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK-IRHRNIVKFYGFCSH----A  198 (226)
Q Consensus       126 ~~~~~~-~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~-l~h~nlv~l~g~~~~----~  198 (226)
                      ++|... ++||+|+||+||+|.. .+++.||||+++.         ...+.+|+.++.+ .+|||||++++++.+    .
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~---------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC---------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            467654 4699999999999965 5789999999864         2467789988765 589999999999865    3


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...++|||||++|+|.++|...
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~  103 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDR  103 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSC
T ss_pred             CEEEEEEECCCCCcHHHHHHhc
Confidence            5689999999999999999764

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.4e-15  Score=113.05  Aligned_cols=94  Identities=24%  Similarity=0.338  Sum_probs=80.4

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCCeEEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~~~~lv  204 (226)
                      ++|...+.||+|+||+||+|.. .++..||||+++...  ........+.+|+.+|+.++||||+++.+++......+++
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhh--CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            4577788999999999999975 578999999997522  2223467899999999999999999999999999999999


Q ss_pred             EEccCCCChhhhccCCc
Q 040605          205 YEYLERGSLATNLSNDA  221 (226)
Q Consensus       205 ~e~~~~g~L~~~l~~~~  221 (226)
                      +||+.+++|..+++..+
T Consensus        80 ~~~~~~~~l~~~~~~~~   96 (292)
T d1unla_          80 FEFCDQDLKKYFDSCNG   96 (292)
T ss_dssp             EECCSEEHHHHHHHTTT
T ss_pred             eeecccccccccccccc
Confidence            99999999988877554

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.3e-16  Score=118.96  Aligned_cols=96  Identities=21%  Similarity=0.328  Sum_probs=78.3

Q ss_pred             cCccccceeccCCceeEEEEEc----CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-CcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL----PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~----~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||+||++..    .+|+.||||.++......+....+.+.+|+.+|.+++| |||+++.+++.....
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688889999999999999954    25889999998641111111234678899999999966 899999999999999


Q ss_pred             EEEEEEccCCCChhhhccCCc
Q 040605          201 SFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      .++++||+.+|+|.+++...+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~  124 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE  124 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS
T ss_pred             eeeeeecccccHHHHHHHhcc
Confidence            999999999999999987554

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.50  E-value=2.9e-14  Score=110.75  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=73.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeC--CeE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA--RHS  201 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~--~~~  201 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++.    .   ..+.+.+|+.+|..++ ||||+++++++...  ...
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~----~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP----V---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS----S---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECH----H---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            5688889999999999999976 5789999999864    1   2467899999999995 99999999998754  568


Q ss_pred             EEEEEccCCCChhhhcc
Q 040605          202 FLVYEYLERGSLATNLS  218 (226)
Q Consensus       202 ~lv~e~~~~g~L~~~l~  218 (226)
                      ++||||+++|+|..+.+
T Consensus       108 ~~v~e~~~~~~L~~~~~  124 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLYQ  124 (328)
T ss_dssp             EEEEECCCSCBGGGTTT
T ss_pred             eEEEeecCCCcHHHHhc
Confidence            99999999999988754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=110.52  Aligned_cols=94  Identities=22%  Similarity=0.433  Sum_probs=73.9

Q ss_pred             hcCccccceeccCCceeEEEEEcC------CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcC-CCCcccceeeEEEe
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAELP------SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKI-RHRNIVKFYGFCSH  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~~------~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l-~h~nlv~l~g~~~~  197 (226)
                      .++|...+.||+|+||.||+|...      +++.||||+++..   ......+.+.+|...+.++ +|+||+.+.+++..
T Consensus        12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~   88 (299)
T d1ywna1          12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTK   88 (299)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC-------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccc---cCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeecc
Confidence            356888889999999999999752      3468999998642   2223457888999888877 78999999999876


Q ss_pred             C-CeEEEEEEccCCCChhhhccCCc
Q 040605          198 A-RHSFLVYEYLERGSLATNLSNDA  221 (226)
Q Consensus       198 ~-~~~~lv~e~~~~g~L~~~l~~~~  221 (226)
                      + +..++|||||++|+|.++|+..+
T Consensus        89 ~~~~~~iv~E~~~~g~L~~~l~~~~  113 (299)
T d1ywna1          89 PGGPLMVIVEFCKFGNLSTYLRSKR  113 (299)
T ss_dssp             TTSCCEEEEECCTTCBHHHHHHHTG
T ss_pred             CCCeEEEEEEecCCCcHHHHHHhcc
Confidence            5 46899999999999999997543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-14  Score=112.10  Aligned_cols=94  Identities=22%  Similarity=0.289  Sum_probs=76.0

Q ss_pred             hcCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC-----
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA-----  198 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~-----  198 (226)
                      +++|...+.||+|+||+||+|.. .+|+.||||+++..  ..+....+.+.+|+.+|++++|||+|++++++...     
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP--FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCT--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECch--hcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence            35688888999999999999975 58999999999752  22233456789999999999999999999998543     


Q ss_pred             CeEEEEEEccCCCChhhhccCC
Q 040605          199 RHSFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~~~  220 (226)
                      ...+++++|+.+|+|.++++..
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~  116 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQ  116 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTC
T ss_pred             CceEEEEEeecCCchhhhcccc
Confidence            3346777888899999998754

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.6e-14  Score=110.78  Aligned_cols=90  Identities=21%  Similarity=0.361  Sum_probs=70.4

Q ss_pred             cCccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEe------C
Q 040605          126 NDFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSH------A  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~------~  198 (226)
                      ++|...+.||+|+||+||+|... +|..||||++....  ........+.+|+.++++++|||||++++++..      .
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~--~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhh--cCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            45788889999999999999754 79999999997522  223345678999999999999999999999964      3


Q ss_pred             CeEEEEEEccCCCChhhhcc
Q 040605          199 RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~  218 (226)
                      ...++||||+.++ +.+.++
T Consensus        95 ~~~~iv~Ey~~~~-l~~~~~  113 (355)
T d2b1pa1          95 QDVYLVMELMDAN-LCQVIQ  113 (355)
T ss_dssp             CEEEEEEECCSEE-HHHHHT
T ss_pred             ceeEEEEeccchH-HHHhhh
Confidence            6789999999755 444444

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.6e-15  Score=111.24  Aligned_cols=95  Identities=18%  Similarity=0.313  Sum_probs=75.2

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCC--chhhHHHHHHHHHHHhcCC--CCcccceeeEEEeCCe
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGD--QIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHARH  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~--~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~~~  200 (226)
                      ++|...+.||+|+||+||+|.. .+|..||||++.......  .......+.+|+.+|++++  |||||++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4578888999999999999975 579999999986421111  1112244778999999886  9999999999999999


Q ss_pred             EEEEEEccCC-CChhhhccCC
Q 040605          201 SFLVYEYLER-GSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~-g~L~~~l~~~  220 (226)
                      .++||||+.+ +++.+++...
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~  104 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER  104 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH
T ss_pred             EEEEEEeccCcchHHHHHhcc
Confidence            9999999975 6788887644

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.9e-14  Score=110.81  Aligned_cols=91  Identities=21%  Similarity=0.322  Sum_probs=67.9

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC-----
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR-----  199 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~-----  199 (226)
                      +.|...+.||+|+||+||+|.. .+|+.||||+++.. . ......+.+.+|+.+|+.++|||+|++++++...+     
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~-~-~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRP-F-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSST-T-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchh-h-cChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            5677788999999999999975 47999999999752 1 22234578999999999999999999999997654     


Q ss_pred             -eEEEEEEccCCCChhhhccC
Q 040605          200 -HSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       200 -~~~lv~e~~~~g~L~~~l~~  219 (226)
                       ..++||||+ +++|..+++.
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~  115 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH  115 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH
T ss_pred             ceEEEEEecc-cccHHHHHHh
Confidence             469999999 4677776653

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=114.21  Aligned_cols=81  Identities=31%  Similarity=0.434  Sum_probs=64.7

Q ss_pred             CccccceeccCCceeEEEEEcC-CCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------C
Q 040605          127 DFDAKYCIGNGGHGSVYKAELP-SGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------R  199 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~~-~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------~  199 (226)
                      +|...++||+|+||+||+|... +|+.||||++....        ....+|+.+|++++|+||+++++++...      .
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--------~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~   92 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV   92 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--------SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc--------hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCce
Confidence            4677789999999999999764 79999999997521        1234799999999999999999998543      3


Q ss_pred             eEEEEEEccCCCChhh
Q 040605          200 HSFLVYEYLERGSLAT  215 (226)
Q Consensus       200 ~~~lv~e~~~~g~L~~  215 (226)
                      ..++|||||++|.+..
T Consensus        93 ~~~lv~Ey~~~~~~~~  108 (350)
T d1q5ka_          93 YLNLVLDYVPETVYRV  108 (350)
T ss_dssp             EEEEEEECCSEEHHHH
T ss_pred             EEEEEEeccCCccHHH
Confidence            4789999998664333

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-14  Score=110.42  Aligned_cols=92  Identities=22%  Similarity=0.222  Sum_probs=70.7

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeCC----e
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHAR----H  200 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~~----~  200 (226)
                      .+|...+.||+|+||+||+|.. .+|+.||||++... .  .....+.+.+|+.+|..++|||++++++++....    .
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~   84 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPF-E--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK   84 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCT-T--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehh-c--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence            4577888999999999999965 58999999999652 1  2234578999999999999999999999996543    2


Q ss_pred             EEEEEEccCCCChhhhccCC
Q 040605          201 SFLVYEYLERGSLATNLSND  220 (226)
Q Consensus       201 ~~lv~e~~~~g~L~~~l~~~  220 (226)
                      .+++++|+.+|+|.+++...
T Consensus        85 ~~~l~~~~~~g~L~~~l~~~  104 (345)
T d1pmea_          85 DVYLVTHLMGADLYKLLKTQ  104 (345)
T ss_dssp             CEEEEEECCCEEHHHHHHHC
T ss_pred             eEEEEEeecCCchhhhhhcC
Confidence            34555677799999998643

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-14  Score=108.36  Aligned_cols=92  Identities=24%  Similarity=0.362  Sum_probs=71.4

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeEEEeC------
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGFCSHA------  198 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~~~~------  198 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||++......  ....+.+.+|+.+|++++|+|++++.+++...      
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK--EGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CT--TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc--hHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            5678888999999999999976 58999999998652221  12346789999999999999999999998553      


Q ss_pred             --CeEEEEEEccCCCChhhhccC
Q 040605          199 --RHSFLVYEYLERGSLATNLSN  219 (226)
Q Consensus       199 --~~~~lv~e~~~~g~L~~~l~~  219 (226)
                        ...+++|||++++.+..+...
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~  110 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNV  110 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCT
T ss_pred             cCceEEEEEeccCCCccchhhhc
Confidence              457899999998777655443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=1.5e-12  Score=99.30  Aligned_cols=88  Identities=19%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCC-CcccceeeEEEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRH-RNIVKFYGFCSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h-~nlv~l~g~~~~~~~~~l  203 (226)
                      ++|...+.||+|+||+||+|.. .+|+.||||.+.....      ...+.+|++.+..++| +|++.+.+++......++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC------cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            4678888999999999999975 4789999999865221      1346778888888865 899999999999999999


Q ss_pred             EEEccCCCChhhhccCC
Q 040605          204 VYEYLERGSLATNLSND  220 (226)
Q Consensus       204 v~e~~~~g~L~~~l~~~  220 (226)
                      ||||+ +|+|.++++..
T Consensus        79 vme~~-~~~l~~~~~~~   94 (293)
T d1csna_          79 VIDLL-GPSLEDLLDLC   94 (293)
T ss_dssp             EEECC-CCBHHHHHHHT
T ss_pred             EEEec-CCCHHHHHHhh
Confidence            99999 58999988754

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.9e-13  Score=102.65  Aligned_cols=92  Identities=22%  Similarity=0.397  Sum_probs=66.6

Q ss_pred             hcCccccceeccCCceeEEEEEc-CC-CCeEEEEEecCCCCCCchhhHHHHHHHHHHHhc---CCCCcccceeeEEEe--
Q 040605          125 KNDFDAKYCIGNGGHGSVYKAEL-PS-GEFLAVKKFHSPLPGDQIADQKEFLAEIEALTK---IRHRNIVKFYGFCSH--  197 (226)
Q Consensus       125 ~~~~~~~~~lg~g~~g~v~~~~~-~~-g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~---l~h~nlv~l~g~~~~--  197 (226)
                      .++|...+.||+|+||+||+|.. .+ ++.||||+++.......  ....+.+|+.+|+.   .+||||+++++++..  
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccch--HHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            46788889999999999999975 34 56799999864211111  12345667766655   489999999999853  


Q ss_pred             ---CCeEEEEEEccCCCChhhhcc
Q 040605          198 ---ARHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       198 ---~~~~~lv~e~~~~g~L~~~l~  218 (226)
                         ....++++||+++|++.....
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~~~~  107 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTYLDK  107 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHH
T ss_pred             cccCceEEEEEEeccCCchhhhhh
Confidence               246789999999887654443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=7.7e-12  Score=95.59  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             cCccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCCCCcccceeeE-EEeCCeEEE
Q 040605          126 NDFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIRHRNIVKFYGF-CSHARHSFL  203 (226)
Q Consensus       126 ~~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~h~nlv~l~g~-~~~~~~~~l  203 (226)
                      +.|...+.||+|+||.||+|.. .+|+.||||.+.... .     ..++..|++++..++|+|++..+.. ....+..++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~-----~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~i   80 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-K-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT-T-----SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc-c-----CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEE
Confidence            3578888999999999999975 578999999986521 1     1357889999999987776655544 466788899


Q ss_pred             EEEccCCCChhhhcc
Q 040605          204 VYEYLERGSLATNLS  218 (226)
Q Consensus       204 v~e~~~~g~L~~~l~  218 (226)
                      ||||+. |+|.+.+.
T Consensus        81 vme~~~-~~l~~~~~   94 (299)
T d1ckia_          81 VMELLG-PSLEDLFN   94 (299)
T ss_dssp             EEECCC-CBHHHHHH
T ss_pred             EEEEcC-Cchhhhhh
Confidence            999995 66766654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.83  E-value=3.8e-09  Score=74.98  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             ccceeccCCceeEEEEEcCCCCeEEEEEecCCCCC----------C----chhhHHHHHHHHHHHhcCCCCcccceeeEE
Q 040605          130 AKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPG----------D----QIADQKEFLAEIEALTKIRHRNIVKFYGFC  195 (226)
Q Consensus       130 ~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~----------~----~~~~~~~~~~e~~~l~~l~h~nlv~l~g~~  195 (226)
                      ..+.||+|+||.||+|...+|..||||.++.....          .    .........+|...+.++.|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            45789999999999998889999999987532110          0    001123456788889999999998877543


Q ss_pred             EeCCeEEEEEEccCCCChhh
Q 040605          196 SHARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       196 ~~~~~~~lv~e~~~~g~L~~  215 (226)
                        .  .+++|||++++.+.+
T Consensus        84 --~--~~lvme~~~~~~~~~   99 (191)
T d1zara2          84 --G--NAVLMELIDAKELYR   99 (191)
T ss_dssp             --T--TEEEEECCCCEEGGG
T ss_pred             --C--CEEEEEeeccccccc
Confidence              2  379999999776654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=6.3e-09  Score=81.07  Aligned_cols=81  Identities=17%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             CccccceeccCCceeEEEEEc-CCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-----------CCcccceeeE
Q 040605          127 DFDAKYCIGNGGHGSVYKAEL-PSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-----------HRNIVKFYGF  194 (226)
Q Consensus       127 ~~~~~~~lg~g~~g~v~~~~~-~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~nlv~l~g~  194 (226)
                      .|...+.||+|+||+||+|+. .+|+.||||+++.     +....+.+.+|+.++.+++           |+||++++++
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~-----~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG-----DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEec-----cccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            377788999999999999976 5799999999965     1123467888998887765           5789999988


Q ss_pred             EEe--CCeEEEEEEccCCCC
Q 040605          195 CSH--ARHSFLVYEYLERGS  212 (226)
Q Consensus       195 ~~~--~~~~~lv~e~~~~g~  212 (226)
                      +..  ....+++++++..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~  108 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGE  108 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCE
T ss_pred             eeeccccceeeeeeeccccc
Confidence            754  456677777766554

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.45  E-value=0.061  Score=38.31  Aligned_cols=94  Identities=15%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             HHHHHhcCccccceeccCCceeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC-CCcccceeeEEEeC
Q 040605          120 EIIRAKNDFDAKYCIGNGGHGSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR-HRNIVKFYGFCSHA  198 (226)
Q Consensus       120 ~l~~~~~~~~~~~~lg~g~~g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~-h~nlv~l~g~~~~~  198 (226)
                      ++...-+.+......+-++...||+... ++..+.+|+...... .   ....+.+|...+..+. +--+.+++.+...+
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~-~---~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~   82 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-G---TTYDVEREKDMMLWLEGKLPVPKVLHFERHD   82 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGT-T---STTCHHHHHHHHHHHTTTSCCCCEEEEEEET
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcc-c---chhhHHHHHHHHHHHhccCCCCcEEEEEecC
Confidence            3444444554433322222357898765 566677887653111 1   2234667777766553 33345777777888


Q ss_pred             CeEEEEEEccCCCChhhhcc
Q 040605          199 RHSFLVYEYLERGSLATNLS  218 (226)
Q Consensus       199 ~~~~lv~e~~~~g~L~~~l~  218 (226)
                      +..++||+++++.++.+...
T Consensus        83 ~~~~lv~~~l~G~~~~~~~~  102 (263)
T d1j7la_          83 GWSNLLMSEADGVLCSEEYE  102 (263)
T ss_dssp             TEEEEEEECCSSEEHHHHTT
T ss_pred             CceEEEEEeccccccccccc
Confidence            89999999999888766443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.023  Score=40.98  Aligned_cols=18  Identities=22%  Similarity=0.248  Sum_probs=9.0

Q ss_pred             CCCceeeccccceeeecC
Q 040605            2 QGLLFIDISYNDLQGLIP   19 (226)
Q Consensus         2 ~~L~~ldls~N~L~G~iP   19 (226)
                      +.|..+++++|+|++..|
T Consensus       148 ~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             TTCCEEECTTSCCSCCCT
T ss_pred             ccchhcccccccccccCc
Confidence            345555555555554433

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=93.03  E-value=0.24  Score=34.77  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             eeEEEEEcCCCCeEEEEEecCCCCCCchhhHHHHHHHHHHHhcCC--CCcccceeeEEEeCCeEEEEEEccCCCChhh
Q 040605          140 GSVYKAELPSGEFLAVKKFHSPLPGDQIADQKEFLAEIEALTKIR--HRNIVKFYGFCSHARHSFLVYEYLERGSLAT  215 (226)
Q Consensus       140 g~v~~~~~~~g~~vavk~l~~~~~~~~~~~~~~~~~e~~~l~~l~--h~nlv~l~g~~~~~~~~~lv~e~~~~g~L~~  215 (226)
                      +.||+....++..+.+|.-... ..      ..+..|...+..+.  .-.+.+++.++..++..++||+|+++-++.+
T Consensus        25 ~~v~r~~~~~~~~~vlK~~~~~-~~------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~   95 (255)
T d1nd4a_          25 AAVFRLSAQGRPVLFVKTDLSG-AL------NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS   95 (255)
T ss_dssp             CEEEEEECTTSCCEEEEEECSC-TT------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTT
T ss_pred             CeEEEEEeCCCCEEEEEeCCcc-CH------hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccccc
Confidence            5689988877888888876541 11      23556666665543  2335567777777888999999998766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.07  Score=35.08  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=15.1

Q ss_pred             CCCCceeeccccceeeecCC
Q 040605            1 MQGLLFIDISYNDLQGLIPN   20 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~   20 (226)
                      |++|+.|+|++|+|+.--|.
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTT
T ss_pred             ccccCcceeeccccCCcccc
Confidence            46788888888888875554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.53  E-value=0.15  Score=34.50  Aligned_cols=36  Identities=8%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             CCCCceeeccccceeeecCCCc-cccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNST-AFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN~   36 (226)
                      +++|+.|+||+|+|++-.|... .+.........+|.
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence            4678889999999987666532 12333333444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=89.07  E-value=0.064  Score=39.40  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=16.8

Q ss_pred             CCCCceeeccc-cceeeecCCC
Q 040605            1 MQGLLFIDISY-NDLQGLIPNS   21 (226)
Q Consensus         1 l~~L~~ldls~-N~L~G~iP~~   21 (226)
                      |++|++|||++ |+|+|.||..
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~   96 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA   96 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG
T ss_pred             Cccccccccccccccccccccc
Confidence            57888888885 7888888864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.3  Score=32.03  Aligned_cols=32  Identities=13%  Similarity=0.004  Sum_probs=16.9

Q ss_pred             CCceeeccccceeeecCCCc-cccccCcccccCC
Q 040605            3 GLLFIDISYNDLQGLIPNST-AFRNAPLESLKGN   35 (226)
Q Consensus         3 ~L~~ldls~N~L~G~iP~~~-~~~~~~~~~~~gN   35 (226)
                      .|+.|||++|+++. ||... .+.......+.+|
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDN   51 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSS
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCC
Confidence            46677777777755 34321 2333444445555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.99  E-value=0.29  Score=30.54  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CCCCceeeccccceeeecCCC-ccccccCcccccCCC
Q 040605            1 MQGLLFIDISYNDLQGLIPNS-TAFRNAPLESLKGNK   36 (226)
Q Consensus         1 l~~L~~ldls~N~L~G~iP~~-~~~~~~~~~~~~gN~   36 (226)
                      |+.|+.||+|+|.++ .+|.. ..+.........+|.
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccc
Confidence            467999999999998 47753 233344444444543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.83  E-value=0.26  Score=30.75  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=19.5

Q ss_pred             ceeeccccceeeecCCCccccccCcccccCCC
Q 040605            5 LFIDISYNDLQGLIPNSTAFRNAPLESLKGNK   36 (226)
Q Consensus         5 ~~ldls~N~L~G~iP~~~~~~~~~~~~~~gN~   36 (226)
                      ++||||+|+++ .+|....+.........+|.
T Consensus         1 R~L~Ls~n~l~-~l~~l~~l~~L~~L~ls~N~   31 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNR   31 (124)
T ss_dssp             SEEECTTSCCS-SCCCGGGGTTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCcccccCCCCCEEECCCCc
Confidence            46889999998 55654445555555555553

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=81.54  E-value=1.2  Score=33.70  Aligned_cols=79  Identities=18%  Similarity=0.116  Sum_probs=44.7

Q ss_pred             ceeccCCceeEEEEEcCC-CCeEEEEEecCC---CCCCchhhHHHHHHHHHHHhcC-CC--CcccceeeEEEeCCeEEEE
Q 040605          132 YCIGNGGHGSVYKAELPS-GEFLAVKKFHSP---LPGDQIADQKEFLAEIEALTKI-RH--RNIVKFYGFCSHARHSFLV  204 (226)
Q Consensus       132 ~~lg~g~~g~v~~~~~~~-g~~vavk~l~~~---~~~~~~~~~~~~~~e~~~l~~l-~h--~nlv~l~g~~~~~~~~~lv  204 (226)
                      +.+|.|....||+....+ +..+.||.-...   ..............|.+.+..+ .+  ..+.+++.  ..++..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~--~d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFY--SDTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEE--EETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEE--EcCCCCEEE
Confidence            368999999999998764 678888864320   1111011122344577766654 22  23334443  345667899


Q ss_pred             EEccCCCC
Q 040605          205 YEYLERGS  212 (226)
Q Consensus       205 ~e~~~~g~  212 (226)
                      |||+++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EeccCCcc
Confidence            99997654