BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040607
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 150/475 (31%), Positives = 209/475 (44%), Gaps = 35/475 (7%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L + LQ L + N L G + T L++LNISSNQ G I PPL LKS+Q L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLP-LKSLQYLS 272
Query: 147 LSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGV 203
L+ N F +IP L + L D N Y + ++ ++ SG
Sbjct: 273 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSG-----IFQMPK 258
L LK ++LS GE P L+ + L TL +N SG + Q PK
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 259 HARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLV 315
+ + L YL +N F IP + N L L LS N L G IP L G S LR L
Sbjct: 391 NTLQEL-YLQ--NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLK 445
Query: 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
L N ++G I + + + L L LD N GEIP LSNC + LS+N L+G+IP+
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK---- 431
W+G L + + NN G IP E L LD++ G++P+ S K
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 432 --QGKPLNSM--SGLDLSCNKLTGEIP---LRIGNLTRIHT---LNVSHNKLTGLILSTF 481
GK + G+ C+ + +R L R+ T N++ G TF
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
N LD+SYN L+G IP ++ + L + ++ HN +SG PD V N
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 216/492 (43%), Gaps = 76/492 (15%)
Query: 91 VHLQELHVDHNNLYG--VPPWCLGNMTSLQVLNISSNQLT--GNISSPPLKHLKSIQELK 146
L L + N+L G LG+ + L+ LN+SSN L G +S LK L S++ L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLK-LNSLEVLD 154
Query: 147 LSNNYFQIPISLGPLYNH--SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT 204
LS N +G + + LK N+I + ++ L + +S + T
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST 211
Query: 205 FPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL-VQVNNYLSGIFQMPKHARRH 263
FL L+H+++S L G+F +S T+L+ L + N ++ I +P + ++
Sbjct: 212 GIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQY 270
Query: 264 ----------------------LTYLDVSDNFFQVHIP---------------------- 279
LT LD+S N F +P
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 280 -----VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKIN--L 332
+ M+ L VLDLS N G++PE L SL L LS+N G I
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
L L L N F G+IP +LSNC+ L+LS N+LSG IP LG+LS D+ + N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
LEG IP E + L+ L + ++ G +PS + LN +S LS N+LTGE
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPS-----GLSNCTNLNWIS---LSNNRLTGE 502
Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
IP IG L + L +S+N +G I + + + LDL+ N G IP + + +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-- 560
Query: 513 VFSVAHNKLSGK 524
+A N ++GK
Sbjct: 561 --KIAANFIAGK 570
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/440 (25%), Positives = 183/440 (41%), Gaps = 88/440 (20%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
L +L +S N + V +L LD+S N IP C +L++L +S NK+
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 233
Query: 323 GHIFSKKIN-LTNLWRLQLDGNHFI----------------------GEIPESLSN-CNL 358
G FS+ I+ T L L + N F+ GEIP+ LS C+
Sbjct: 234 GD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNI 417
GL LS NH G +P + G+ S+ E + + +N+ G +PM+ ++ L++LD+S
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 418 FGSLPSCFNPFSIKQ-------------------GKPLNSMSGLDLSCNKLTGEIPLRIG 458
G LP S P N++ L L N TG+IP +
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNL------------------------KQTESLDLSY 494
N + + +L++S N L+G I S+ +L K E+L L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-----TFNGSSYDGN-PFLSS 548
N LTG+IP L L S+++N+L+G+ P W+ + + +S+ GN P
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 549 SCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFAL 608
C SLI ++ +F + + G + N +G+R+ Y M H A
Sbjct: 533 DCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 609 NNLATLIVIIRSHGVNQRQL 628
N ++ G+ QL
Sbjct: 589 N-------LLEFQGIRSEQL 601
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 44/281 (15%)
Query: 285 SLSVLDLSKNRLIGKIPERLAMG-CFSLRYLVLSNN------KMKGHIFSKKINLTNL-- 335
SL+ LDLS+N L G + ++G C L++L +S+N K+ G + + + +L
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 336 ----------W----------RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
W L + GN G++ +S C L +S N+ S IP
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 214
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKP 435
+LG+ S + + + N L G L++L+IS G +P P
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----------P 264
Query: 436 LNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
L S+ L L+ NK TGEIP G + L++S N G + F + ESL LS
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 495 NKLTGKIP-PQLVELNALAVFSVAHNKLSGKTPDWVAQFAT 534
N +G++P L+++ L V ++ N+ SG+ P+ + +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 108/270 (40%), Gaps = 34/270 (12%)
Query: 85 QGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQE 144
GL +L + + +N L G P +G + +L +L +S+N +GNI + L +S+
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIW 539
Query: 145 LKLSNNYFQIPISLGPLYNHSNLKI-FDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203
L L+ N F I + F + +Y + + HG+G
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----------CHGAG- 588
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRH 263
L Q +R E N LS N T + S F
Sbjct: 589 ---NLLEFQ-----------GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD----NNGS 630
Query: 264 LTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
+ +LD+S N +IP +G+M L +L+L N + G IP+ + L L LS+NK+
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKL 689
Query: 322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPE 351
G I LT L + L N+ G IPE
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 150/475 (31%), Positives = 209/475 (44%), Gaps = 35/475 (7%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L + LQ L + N L G + T L++LNISSNQ G I PPL LKS+Q L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLP-LKSLQYLS 275
Query: 147 LSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGV 203
L+ N F +IP L + L D N Y + ++ ++ SG
Sbjct: 276 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSG-----IFQMPK 258
L LK ++LS GE P L+ + L TL +N SG + Q PK
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 259 HARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLV 315
+ + L YL +N F IP + N L L LS N L G IP L G S LR L
Sbjct: 394 NTLQEL-YLQ--NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLK 448
Query: 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
L N ++G I + + + L L LD N GEIP LSNC + LS+N L+G+IP+
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK---- 431
W+G L + + NN G IP E L LD++ G++P+ S K
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 432 --QGKPLNSM--SGLDLSCNKLTGEIP---LRIGNLTRIHT---LNVSHNKLTGLILSTF 481
GK + G+ C+ + +R L R+ T N++ G TF
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
N LD+SYN L+G IP ++ + L + ++ HN +SG PD V N
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 216/492 (43%), Gaps = 76/492 (15%)
Query: 91 VHLQELHVDHNNLYG--VPPWCLGNMTSLQVLNISSNQLT--GNISSPPLKHLKSIQELK 146
L L + N+L G LG+ + L+ LN+SSN L G +S LK L S++ L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLK-LNSLEVLD 157
Query: 147 LSNNYFQIPISLGPLYNH--SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT 204
LS N +G + + LK N+I + ++ L + +S + T
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST 214
Query: 205 FPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL-VQVNNYLSGIFQMPKHARRH 263
FL L+H+++S L G+F +S T+L+ L + N ++ I +P + ++
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 264 ----------------------LTYLDVSDNFFQVHIP---------------------- 279
LT LD+S N F +P
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 280 -----VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKIN--L 332
+ M+ L VLDLS N G++PE L SL L LS+N G I
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
L L L N F G+IP +LSNC+ L+LS N+LSG IP LG+LS D+ + N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
LEG IP E + L+ L + ++ G +PS + LN +S LS N+LTGE
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPS-----GLSNCTNLNWIS---LSNNRLTGE 505
Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
IP IG L + L +S+N +G I + + + LDL+ N G IP + + +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-- 563
Query: 513 VFSVAHNKLSGK 524
+A N ++GK
Sbjct: 564 --KIAANFIAGK 573
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/440 (25%), Positives = 183/440 (41%), Gaps = 88/440 (20%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
L +L +S N + V +L LD+S N IP C +L++L +S NK+
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 236
Query: 323 GHIFSKKIN-LTNLWRLQLDGNHFI----------------------GEIPESLSN-CNL 358
G FS+ I+ T L L + N F+ GEIP+ LS C+
Sbjct: 237 GD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNI 417
GL LS NH G +P + G+ S+ E + + +N+ G +PM+ ++ L++LD+S
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 418 FGSLPSCFNPFSIKQ-------------------GKPLNSMSGLDLSCNKLTGEIPLRIG 458
G LP S P N++ L L N TG+IP +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNL------------------------KQTESLDLSY 494
N + + +L++S N L+G I S+ +L K E+L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-----TFNGSSYDGN-PFLSS 548
N LTG+IP L L S+++N+L+G+ P W+ + + +S+ GN P
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 549 SCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFAL 608
C SLI ++ +F + + G + N +G+R+ Y M H A
Sbjct: 536 DCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 609 NNLATLIVIIRSHGVNQRQL 628
N ++ G+ QL
Sbjct: 592 N-------LLEFQGIRSEQL 604
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 44/281 (15%)
Query: 285 SLSVLDLSKNRLIGKIPERLAMG-CFSLRYLVLSNN------KMKGHIFSKKINLTNL-- 335
SL+ LDLS+N L G + ++G C L++L +S+N K+ G + + + +L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 336 ----------W----------RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
W L + GN G++ +S C L +S N+ S IP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 217
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKP 435
+LG+ S + + + N L G L++L+IS G +P P
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----------P 267
Query: 436 LNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
L S+ L L+ NK TGEIP G + L++S N G + F + ESL LS
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 495 NKLTGKIP-PQLVELNALAVFSVAHNKLSGKTPDWVAQFAT 534
N +G++P L+++ L V ++ N+ SG+ P+ + +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 108/270 (40%), Gaps = 34/270 (12%)
Query: 85 QGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQE 144
GL +L + + +N L G P +G + +L +L +S+N +GNI + L +S+
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIW 542
Query: 145 LKLSNNYFQIPISLGPLYNHSNLKI-FDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203
L L+ N F I + F + +Y + + HG+G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----------CHGAG- 591
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRH 263
L Q +R E N LS N T + S F
Sbjct: 592 ---NLLEFQ-----------GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD----NNGS 633
Query: 264 LTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
+ +LD+S N +IP +G+M L +L+L N + G IP+ + L L LS+NK+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKL 692
Query: 322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPE 351
G I LT L + L N+ G IPE
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 447 NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV 506
N L G IP I LT++H L ++H ++G I S +K +LD SYN L+G +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 507 ELNALAVFSVAHNKLSGKTPDWVAQFA 533
L L + N++SG PD F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402
N+ +G IP +++ LY++ ++SG IP +L + + N L G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 403 QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462
L L + I G++P + FS K SM+ +S N+LTG+IP NL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS----KLFTSMT---ISRNRLTGKIPPTFANL-N 198
Query: 463 IHTLNVSHNKLTGLILSTFSNLKQTE-----------------------SLDLSYNKLTG 499
+ +++S N L G F + K T+ LDL N++ G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 500 KIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSS 549
+P L +L L +V+ N L G+ P F+ S+Y N L S
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 36/222 (16%)
Query: 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
+ + L L++ H N+ G P L + +L L+ S N L+G + P + L ++ +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGI 154
Query: 146 KLSNNYFQ--IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203
N IP S G S + F +I + +G
Sbjct: 155 TFDGNRISGAIPDSYG-------------------------SFSKLFTSMTISRNRLTGK 189
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHA-RR 262
P F +L V+LS L G+ + L ++ Q + N L+ F + K +
Sbjct: 190 IPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSK 244
Query: 263 HLTYLDVSDNFFQVHIPVG--NMKSLSVLDLSKNRLIGKIPE 302
+L LD+ +N +P G +K L L++S N L G+IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
L L+ HL G +P + L++ + +++ NH + + CQ++ ++ I G++
Sbjct: 280 LDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNV 333
Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE--IPLRIGNLTRIHTLNVSHNKLTGLILS 479
+ + L ++ LDLS N + L++ NL+ + TLN+SHN+ GL
Sbjct: 334 KKLH--LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHNKLSGKTPDWVAQFATFNGS 538
F Q E LDL++ +L P + L+ L V ++ + L +A
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 539 SYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVN 585
+ GN F +D ++ N + ++ ++IL G+L ++
Sbjct: 452 NLKGNHF-------QDGTITKTNLLQTVGSLE--VLILSSCGLLSID 489
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
HLQ L++ HN G+ L++L+++ +L N P ++L +Q L L+ +
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 152 F----QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPK 207
Q ++ P+ H NLK ++ I T+++ L L +ILS ++ +
Sbjct: 434 LDTSNQHLLAGLPVLRHLNLKGNHFQDGTI---TKTNLLQTVGSLEVLILSSCGLLSIDQ 490
Query: 208 FLYHQ-HDLKHVNLSHINLRGEFPNWLS 234
+H + HV+LSH +L + + LS
Sbjct: 491 QAFHSLGKMSHVDLSHNSLTCDSIDSLS 518
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 129/305 (42%), Gaps = 23/305 (7%)
Query: 201 SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHA 260
S TF F L+ ++L+ +L+G P+ + N L+ LV N+ + Q+
Sbjct: 267 SSTTFQCFT----QLQELDLTATHLKG-LPSGMKGLNL-LKKLVLSVNHFDQLCQISAAN 320
Query: 261 RRHLTYLDVSDNFFQVHIPVGNMK---SLSVLDLSKNRLIGKIPERLAMGCFS-LRYLVL 316
LT+L + N ++H+ VG ++ +L LDLS N + L + S L+ L L
Sbjct: 321 FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 317 SNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPES-LSNCNLFGGLYLSDNHLSGKIPR 375
S+N+ G L L L P+S N + L L+ L
Sbjct: 381 SHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQH 440
Query: 376 WLGNLSVSEDVIMPNNHL-EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434
L L V + + NH +G I + N LQ + + I L SC SI Q
Sbjct: 441 LLAGLPVLRHLNLKGNHFQDGTIT----KTNLLQTVGSLEVLI---LSSC-GLLSIDQQA 492
Query: 435 --PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL 492
L MS +DLS N LT + + +L I+ LN++ N + + L Q +++L
Sbjct: 493 FHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINL 551
Query: 493 SYNKL 497
S+N L
Sbjct: 552 SHNPL 556
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 89 EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
+ V+L EL +D N L +PP ++T L L++ N+L ++ L S++EL+L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 149 NNYFQIPISLGPLYNHSNLKIFDSENNQI 177
NN + + G + LK +NNQ+
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAH 518
L + TL V+ NKL L + F L L L N+L +PP++ + L L S+ +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGY 142
Query: 519 NKL 521
N+L
Sbjct: 143 NEL 145
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%)
Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
LDL NKL+ LT++ L ++ NKL L F LK E+L ++ NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 502 PPQLVELNALAVFSVAHNKLSGKTP 526
+L LA + N+L P
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPP 126
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 130/300 (43%), Gaps = 24/300 (8%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L +L L + N + + L +TSLQ L+ SSNQ+T PL +L +++ L
Sbjct: 125 LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLD 179
Query: 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP 206
+S+N + L +NL+ + NNQI T LT L+ + L +G+ +
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSL-NGNQLKDI 232
Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTY 266
L +L ++L++ + P LS TKL L N +S I P LT
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNI--SPLAGLTALTN 287
Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
L++++N + P+ N+K+L+ L L N + P L+ L SNNK+
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--V 342
Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
S NLTN+ L N P L+N L L+D + + N+S+ V
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
P+ N+ +L LD+S N+ + I + +L L+ +NN++ I I LTNL L
Sbjct: 168 PLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNNQI-SDITPLGI-LTNLDEL 222
Query: 339 QLDGNHF--IGEIPESLSNCNLFGGLYLSDNHLSGKIP----RWLGNLSVSEDVIMPNNH 392
L+GN IG + SL+N L L++N +S P L L + + I +
Sbjct: 223 SLNGNQLKDIGTL-ASLTN---LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 393 LEGPIPMEFCQLNFLQILDISK----KNIFGSLPSCFNPFSIKQGKPLNSMSGLD---LS 445
L G + +LN Q+ DIS KN+ L FN +I P++S++ L S
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNL-TYLTLYFN--NISDISPVSSLTKLQRLFFS 335
Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
NK++ L NLT I+ L+ HN+++ L
Sbjct: 336 NNKVSDVSSL--ANLTNINWLSAGHNQISDL 364
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
S+N L+ P L NL+ D++M NN + P+ + +++ +F + +
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-------NLTNLTGLTLFNNQITD 121
Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
+P K L +++ L+LS N ++ +I G LT + L+ S N++T L +NL
Sbjct: 122 IDPL-----KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLSFSSNQVTDL--KPLANL 172
Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
E LD+S NK++ L +L L +N++S TP
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 24/300 (8%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L +L L + N + + L +TSLQ LN SSNQ+T PL +L +++ L
Sbjct: 125 LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVT---DLKPLANLTTLERLD 179
Query: 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP 206
+S+N + L +NL+ + NNQI T LT L+ + L +G+ +
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSL-NGNQLKDI 232
Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTY 266
L +L ++L++ + P LS TKL L N +S I P LT
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNI--SPLAGLTALTN 287
Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
L++++N + P+ N+K+L+ L L N + P L+ L NNK+
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--V 342
Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
S NLTN+ L N P L+N L L+D + + N+S+ V
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 44/259 (16%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L L ++ +++N + + P L N+T+L L + +NQ+T PLK+L ++ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP 206
LS+N + L ++L+ + +NQ+ L P L ++
Sbjct: 136 LSSNTIS---DISALSGLTSLQQLNFSSNQV------TDLKPLANLTTL----------- 175
Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTY 266
+ D+ +S I++ + T L++L+ NN +S I P +L
Sbjct: 176 ----ERLDISSNKVSDISVLAKL--------TNLESLIATNNQISDI--TPLGILTNLDE 221
Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
L ++ N + + ++ +L+ LDL+ N++ P G L L L N++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--I 276
Query: 327 SKKINLTNLWRLQLDGNHF 345
S LT L L+L+ N
Sbjct: 277 SPLAGLTALTNLELNENQL 295
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 34/269 (12%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
HL + SD + +P ++LDL N I ++ + G L LVL NNK+
Sbjct: 34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKI- 90
Query: 323 GHIFSKKIN-LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRW----L 377
I K + L L +L + NH + EIP +L + L + DN + K+P+ L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSGL 146
Query: 378 GNLSVSEDVIMPNNHLEG----PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG 433
N++ E M N LE P + +LN+L+I + I LP N +
Sbjct: 147 RNMNCIE---MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH- 202
Query: 434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493
N + ++L E LR L R L + HN++ + + S L L L
Sbjct: 203 ---NKIQAIEL-------EDLLRYSKLYR---LGLGHNQIRMIENGSLSFLPTLRELHLD 249
Query: 494 YNKLTGKIPPQLVELNALAVFSVAHNKLS 522
NKL+ ++P L +L L V + N ++
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 93 LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF 152
L ELH+DHN + + L + L L + NQ+ I + L L +++EL L NN
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL 253
Query: 153 -QIPISL 158
++P L
Sbjct: 254 SRVPAGL 260
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH 344
L+ L +S+ +L G IP+ L +L L L +NK++ + + L+RL L N
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 345 FIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQL 404
SLS L+L +N LS ++P L +L + + V + N++ +FC +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 405 NF 406
F
Sbjct: 288 GF 289
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
T I LN++HN+L L + F+ Q SLD+ +N ++ K+ P+L + L L V ++ HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 93
Query: 520 KLS 522
+LS
Sbjct: 94 ELS 96
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
T I LN++HN+L L + F+ Q SLD+ +N ++ K+ P+L + L L V ++ HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 83
Query: 520 KLS 522
+LS
Sbjct: 84 ELS 86
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
T I LN++HN+L L + F+ Q SLD+ +N ++ K+ P+L + L L V ++ HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 88
Query: 520 KLS 522
+LS
Sbjct: 89 ELS 91
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 129/300 (43%), Gaps = 24/300 (8%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L +L L + N + + L +TSLQ L+ SSNQ+T PL +L +++ L
Sbjct: 125 LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERLD 179
Query: 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP 206
+S+N + L +NL+ + NNQI T LT L+ + L +G+ +
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSL-NGNQLKDI 232
Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTY 266
L +L ++L++ + P LS TKL L N +S I P LT
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNI--SPLAGLTALTN 287
Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
L++++N + P+ N+K+L+ L L N + P L+ L NNK+
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--V 342
Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
S NLTN+ L N P L+N L L+D + + N+S+ V
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 33/280 (11%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
T+ L + LQ + ++ GV L N+T + N S+NQLT +I+ PLK+L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI---NFSNNQLT-DIT--PLKNLT 85
Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT--PKFQLNSIILS 198
+ ++ ++NN + PL N +NL NNQI +LT + +L+S +S
Sbjct: 86 KLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 142
Query: 199 HGSGVTFPKFLYHQH-------DLKHV-NLSHINLRGEFPNWLSENN-----TKLQTLVQ 245
S ++ L DLK + NL+ + N +S+ + T L++L+
Sbjct: 143 DISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 246 VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLA 305
NN +S I P +L L ++ N + + ++ +L+ LDL+ N++ P
Sbjct: 203 TNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---L 257
Query: 306 MGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
G L L L N++ S LT L L+L+ N
Sbjct: 258 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
LN++ GL+L N++T PL+ NLT+I L +S N L +S + L+ ++LDL+
Sbjct: 62 LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTST 117
Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
++T P L L+ L V + N+++ +P
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP 146
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
+ ++ L + + V P L +++LQVL + NQ+T NIS PL L ++Q L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYL 156
Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
+ N L PL N S L +++N+I
Sbjct: 157 SIGNAQVS---DLTPLANLSKLTTLKADDNKI 185
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 34/301 (11%)
Query: 263 HLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320
HL L++++N P N+ +L L L NRL IP + G +L L +S NK
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENK 115
Query: 321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL 380
+ + +L NL L++ N + + S N L L +L+
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---------- 165
Query: 381 SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
S+ + + +HL G I + LN I D S K ++ I L++M+
Sbjct: 166 SIPTEAL---SHLHGLIVLRLRHLNINAIRDYSFKRLYR-----LKVLEISHWPYLDTMT 217
Query: 441 -----GLDLS------CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTES 489
GL+L+ CN LT L + +L + LN+S+N ++ + S L + +
Sbjct: 218 PNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Query: 490 LDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSS 549
+ L +L P LN L V +V+ N+L+ D NP L+
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP-LACD 335
Query: 550 C 550
C
Sbjct: 336 C 336
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 90 FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
F HL+EL ++ N + V P N+ +L+ L + SN+L I L ++ +L +S
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISE 113
Query: 150 NYFQIPIS--LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP- 206
N I + LYN +L++ D N+ +Y + S L + L + + P
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGD--NDLVYISHRAFSGLNS--LEQLTLEKCNLTSIPT 169
Query: 207 KFLYHQHDLKHVNLSHINL 225
+ L H H L + L H+N+
Sbjct: 170 EALSHLHGLIVLRLRHLNI 188
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
TI L E + LQE+ + L V P+ + L+VLN+S NQLT
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFN------------------PFSIKQGKPLNSMSG 441
EF L+ L++++ + P FN P + G L++++
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG--LSNLTK 108
Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
LD+S NK+ + +L + +L V N L + FS L E L L LT
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 502 PPQLVELNALAVFSVAH 518
L L+ L V + H
Sbjct: 169 TEALSHLHGLIVLRLRH 185
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
LN++ GL+L N++T PL+ NLT+I L +S N L +S + L+ ++LDL+
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTST 123
Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
++T P L L+ L V + N+++ +P
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP 152
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
+ ++ L + + V P L +++LQVL + NQ+T NIS PL L ++Q L
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYL 162
Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
+ NN L PL N S L +++N+I
Sbjct: 163 SIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 90 FVHLQEL----HVD--HNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ 143
HL++L H+D HN L +PP L + L+VL S N L N+ + +L +Q
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NVDG--VANLPRLQ 511
Query: 144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
EL L NN Q ++ PL + L + + + N +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 90 FVHLQEL----HVD--HNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ 143
HL++L H+D HN L +PP L + L+VL S N L N+ + +L +Q
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NVDG--VANLPRLQ 511
Query: 144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
EL L NN Q ++ PL + L + + + N +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI 463
LN ++ IS +FG LP + L+L N+LTG P + I
Sbjct: 36 LNDNELGRISSDGLFGRLPH---------------LVKLELKRNQLTGIEPNAFEGASHI 80
Query: 464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG 523
L + NK+ + F L Q ++L+L N+++ +P LN+L ++A N +
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Query: 524 KT-----PDWVAQFATFNGSSYDGNP 544
+W+ + + G++ G P
Sbjct: 141 NCHLAWFAEWLRKKSLNGGAARCGAP 166
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 458 GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517
G L + L + N+LTG+ + F + L L NK+ + L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 518 HNKLSGKTPDWVAQFATFNGSSYDGNPF 545
N++S P + + NPF
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL 466
++ D+SK IF L S F+ F+ + L L+ N++ LT + L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFT--------DLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
N+S N L + F NL + E LDLSYN + + L L ++ N+L P
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387
Query: 527 DWV 529
D +
Sbjct: 388 DGI 390
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 311 LRYLVLSNNKMKG-HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369
L YL L+ N++ S + LTNL+ G + I +I +L N LYL+++++
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYI----GTNKITDI-SALQNLTNLRELYLNEDNI 122
Query: 370 SGKIPRWLGNLSVSEDVIMPNNH-LEGPIPME-FCQLNFLQILDISKKNI--FGSLPSCF 425
S P L NL+ + + NH L P+ LN+L + + K++ +L +
Sbjct: 123 SDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLY 180
Query: 426 ----NPFSIKQGKPLNSMSGL---DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL 478
N I+ PL S++ L N++T P + N TR+++L + +NK+T L
Sbjct: 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITD--L 236
Query: 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
S +NL Q L++ N+++ + +L L +V N++S
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQIS 278
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 24/246 (9%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLVLSNNKM 321
+L YL+++ N P+ N+ L+ L + N KI + A+ + LR L L+ + +
Sbjct: 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTN----KITDISALQNLTNLRELYLNEDNI 122
Query: 322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLS 381
S NLT + L L NH + ++ LSN L ++++ + P + NL+
Sbjct: 123 SD--ISPLANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLT 177
Query: 382 VSEDVIMPNNHLEGPIPM-EFCQLNFL-----QILDISKKNIFGSLPSC-FNPFSIKQGK 434
+ + N +E P+ L++ QI DI+ L S I
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLS 237
Query: 435 PLNSMSGL---DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD 491
PL ++S L ++ N+++ ++ +LT++ LNV N+++ + S +NL Q SL
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQISDI--SVLNNLSQLNSLF 293
Query: 492 LSYNKL 497
L+ N+L
Sbjct: 294 LNNNQL 299
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 28/140 (20%)
Query: 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPP---------- 135
G+ F +L+ELH+ HN + + P L ++T L+ L+++ N+L N++ P
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLD 114
Query: 136 ---------LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSL 186
L HLK+++ L + NN + + LG L S L++ D N+I T + L
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFL---SKLEVLDLHGNEI---TNTGGL 168
Query: 187 TPKFQLNSIILSHGSGVTFP 206
T ++N I L+ V P
Sbjct: 169 TRLKKVNWIDLTGQKCVNEP 188
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 428 FSIKQGKPLNSMSGLDLSCNKLTGE-------IPLRIGNLTRIHTLNVSHNKLTGLILST 480
FS +Q + ++S LDLS N GE PL+ L + N +G+ +
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 481 FSNLKQTESLDLSYNKLTGKI-------PPQLVELN---------------ALAVFSVAH 518
+ Q + LDLS+N L P QL LN L+V +++
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSY 283
Query: 519 NKLS-GKTPDWVAQFATFNGSSYDGNPFLSS 548
N+L +PD + Q S GNPFL S
Sbjct: 284 NRLDRNPSPDELPQVGNL---SLKGNPFLDS 311
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 272 NFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFS---K 328
NFF+V + NM SL LD+S N L +R S+ L LS+N + G +F
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450
Query: 329 KINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG 371
K+ + +L N+ I IP+ +++ L ++ N L
Sbjct: 451 KVKVLDL------HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTR-IHTLNVSHNKLTGLILSTFSNLKQTESLDL 492
K ++S+ LD+S N L R I LN+S N LTG + + + LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457
Query: 493 SYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529
N++ IP + L AL +VA N+L PD V
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGV 492
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
+L+
Sbjct: 159 QLT 161
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL-SNN 150
LQEL++ N L +PP L L+ L++++NQLT + + L L+++ L L N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 151 YFQIP 155
+ IP
Sbjct: 184 LYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
+L+
Sbjct: 159 QLT 161
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL-SNN 150
LQEL++ N L +PP L L+ L++++NQLT + + L L+++ L L N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 151 YFQIP 155
+ IP
Sbjct: 184 LYTIP 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
+L+
Sbjct: 159 QLT 161
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL-SNN 150
LQEL++ N L +PP L L+ L++++NQLT + + L L+++ L L N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 151 YFQIP 155
+ IP
Sbjct: 184 LYTIP 188
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 217/541 (40%), Gaps = 103/541 (19%)
Query: 136 LKHLKSIQELKLSNNYFQIPISLGPLYNHSN-LKIFDSENNQIYAQTESHSLTPK----- 189
++LK++ L LS N + + L P + N LK D +NQI+ E H L P
Sbjct: 119 FRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTL 176
Query: 190 --FQLNSIILSHGSGVTFPKFL--YHQHDLKHVNLS----HINLRGEFPNWLSENNTKLQ 241
F L + L V + K + + L+ +++S +++ G F N +S+ ++
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK--SQAF 234
Query: 242 TLVQVNNYLSGIF-----QMPKH------ARRHLTYLDVSDNF-FQVHIPV-GNMKSLSV 288
+L+ ++ + F + P AR + +LD+S F F ++ V +K L V
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM--------------------KGHI--- 325
L+L+ N+ I KI + G +L+ L LS N + K HI
Sbjct: 295 LNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 326 ------FSKKINLTNLWRLQLDGNHFIGEIPE---------SLSNCNLFGGL-YLSDNHL 369
F +K+ +L L HFI IP+ +L NL L +LS+N L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 370 SG-KIPRWLGNLSVSEDVIMPNNHLEG----PIPMEFCQLNFLQILDISKKNIFGSLPSC 424
I +L + + +I+ N P E L L L + + C
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL-FLGENMLQLAWETELC 472
Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
++ F + L+ + L L+ N L P +LT + L+++ N+LT +LS
Sbjct: 473 WDVF-----EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLP 525
Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-----DWV---------- 529
E LD+S N+L P V +L+V + HNK + +W+
Sbjct: 526 ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582
Query: 530 -AQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYS 588
A S+ G S S G D+ + + + +F V V + L + +L V +
Sbjct: 583 PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFR 642
Query: 589 G 589
G
Sbjct: 643 G 643
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
HLQ L+++HN L +PP ++T+L+ L+++SN+LT
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
+L+
Sbjct: 159 QLT 161
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL-SNN 150
LQEL++ N L +PP L L+ L++++NQLT + + L L+++ L L N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 151 YFQIP 155
+ IP
Sbjct: 184 LYTIP 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQ 339
+ N+ +L VLDLS NRL +P L CF L+Y +N M + + NL NL L
Sbjct: 266 IKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLG 322
Query: 340 LDGNHFIGEIPESLSNCNLFGGL-YLSDNHLSGKIP 374
++GN + + L+ ++ G + YL DN +P
Sbjct: 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 24/106 (22%)
Query: 377 LGNLSVSED------VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430
L S+ ED ++MP + L+ LQI +IS NIF
Sbjct: 198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA-NIFK----------- 245
Query: 431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
+ ++ L L+ N LT E+P I NL+ + L++SHN+LT L
Sbjct: 246 -----YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNAL 511
+P + N + +++S+N+++ L +FSN+ Q +L LSYN+L IPP+ + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 512 AVFSVAHNKLS 522
+ S+ N +S
Sbjct: 105 RLLSLHGNDIS 115
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLT--YLDVSDNFFQVHIPVGNMKSLSVLDLSKNR 295
T L T+V+ +N G+ +PK R +T YLD + F V + N K L+++DLS NR
Sbjct: 9 TCLDTVVRCSN--KGLKVLPKGIPRDVTELYLD-GNQFTLVPKELSNYKHLTLIDLSNNR 65
Query: 296 LIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN 355
I + + L L+LS N+++ L +L L L GN I +PE N
Sbjct: 66 -ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFN 123
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
+DLS N+++ N+T++ TL +S+N+L + TF LK L L N ++
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 502 PPQLVELNALAVFSVAHNKL 521
+L+AL+ ++ N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
L+
Sbjct: 159 DLT 161
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
L L+ HL+G +P + ++ + +++ N + + CQ+N + I G++
Sbjct: 282 LDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD-----QLCQINAASFPSLRDLYIKGNM 335
Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE--IPLRIGNLTRIHTLNVSHNKLTGLILS 479
+ + L ++ LDLS + + L++ NL + LN+S+N+ GL
Sbjct: 336 RKL--DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ 393
Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHNKLSGKTPDWVAQFATFNGS 538
F Q E LD+++ L K P + L+ L V +++H L +A
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 539 SYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIV----ILGID 579
+ GN F +D S+ N ++ ++ +I+ +L ID
Sbjct: 454 NLQGNSF-------QDGSISKTNLLQMVGSLEILILSSCNLLSID 491
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
L+
Sbjct: 159 NLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
L+
Sbjct: 159 NLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
L+
Sbjct: 159 NLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 56 RLTQLN-LDRAELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 98
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 520 KLS 522
L+
Sbjct: 159 NLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459
QLN L +++K + G+LP + LDLS N+L +PL
Sbjct: 57 RLTQLN-LDRCELTKLQVDGTLPV---------------LGTLDLSHNQLQS-LPLLGQT 99
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
L + L+VS N+LT L L L + + L L N+L P L L S+A+N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 520 KLS 522
L+
Sbjct: 160 NLT 162
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
P+ N+ +L LD+S N+ + I + +L L+ +NN++ I I LTNL L
Sbjct: 167 PLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNNQI-SDITPLGI-LTNLDEL 221
Query: 339 QLDGNHF--IGEIPESLSNCNLFGGLYLSDNHLSGKIP----RWLGNLSVSEDVIMPNNH 392
L+GN IG + SL+N L L++N +S P L L + + I +
Sbjct: 222 SLNGNQLKDIGTL-ASLTN---LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 393 LEGPIPMEFCQLNFLQILDISK----KNIFGSLPSCFNPFSIKQGKPLNSMSGLD---LS 445
L G + +LN Q+ DIS KN+ L FN +I P++S++ L S
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLT-YLTLYFN--NISDISPVSSLTKLQRLFFS 334
Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
NK++ L NLT I+ L+ HN+++ L
Sbjct: 335 NNKVSDVSSL--ANLTNINWLSAGHNQISDL 363
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 55/337 (16%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L L ++ +++N + + P L N+T+L L + +NQ+T PLK+L ++ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 147 LSNNYF-------------------QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
LS+N Q+ L PL N + L+ D +N++ + LT
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 188 PKFQLNSIILSHG--SGVT-------FPKFLYHQHDLKHV-------NLSHINLRGEFPN 231
L S+I ++ S +T + + + LK + NL+ ++L +
Sbjct: 195 ---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 251
Query: 232 WLS--ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
L+ TKL L N +S I P LT L++++N + P+ N+K+L+ L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
L N + P L+ L SNNK+ S NLTN+ L N
Sbjct: 310 TLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLT 364
Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
P L+N L L+D + + N+S+ V
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 399
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 32/279 (11%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
T+ L + LQ + ++ GV L N+T + N S+NQLT +I+ PLK+L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI---NFSNNQLT-DIT--PLKNLT 85
Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT--PKFQLNSIILS 198
+ ++ ++NN + PL N +NL NNQI +LT + +L+S +S
Sbjct: 86 KLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 142
Query: 199 HGSGVTFPKFLYHQH------DLKHV-NLSHINLRGEFPNWLSENN-----TKLQTLVQV 246
S ++ L + DLK + NL+ + N +S+ + T L++L+
Sbjct: 143 DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 247 NNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAM 306
NN +S I P +L L ++ N + + ++ +L+ LDL+ N++ P
Sbjct: 203 NNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LS 257
Query: 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
G L L L N++ S LT L L+L+ N
Sbjct: 258 GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 294
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
S+N L+ P L NL+ D++M NN + P+ + +++ +F + +
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-------NLTNLTGLTLFNNQITD 121
Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
+P K L +++ L+LS N ++ +I G LT + LN N++T L +NL
Sbjct: 122 IDPL-----KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLNFG-NQVTDL--KPLANL 171
Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
E LD+S NK++ L +L L +N++S TP
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 24/212 (11%)
Query: 344 HFIGEIPESLSNCNLFGGLY---LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME 400
H+ I + +C F GL L+ HLS ++P L LS + +++ N E
Sbjct: 264 HYFFNISSNTFHC--FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN----- 315
Query: 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG----KPLNSMSGLDLSCNKLTGE--IP 454
CQ++ ++ +I G N ++ G + L ++ LDLS + +
Sbjct: 316 LCQISASNFPSLTHLSIKG------NTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 455 LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAV 513
L++ NL+ + +LN+S+N+ L F Q E LDL++ +L K + L+ L V
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 514 FSVAHNKLSGKTPDWVAQFATFNGSSYDGNPF 545
+++H+ L + + GN F
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 37/171 (21%)
Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE--GPIPMEFCQLNFLQILDISKKN 416
F L S+N L+ + G+L+ E +I+ N L+ I Q+ LQ LDIS+ +
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
+ + K+G D S K + +LN+S N LT
Sbjct: 386 V---------SYDEKKG---------DCSWTK-------------SLLSLNMSSNILTDT 414
Query: 477 ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
I + + LDL NK+ IP Q+V+L AL +VA N+L PD
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPD 461
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
L++S N ++ I +L+++ L +SHN++ L +S F ++ E LDLS+NKL
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 18/150 (12%)
Query: 352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI-MPNNHLEGPIPMEFCQLNFLQIL 410
S+SN L G L D SG + L V DV P ++ I F +N
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY----IYEIFSNMNIKNFT 308
Query: 411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470
+ + PS +PF LD S N LT + G+LT + TL +
Sbjct: 309 VSGTRMVHMLCPSKISPFL-----------HLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 471 NKLTGL--ILSTFSNLKQTESLDLSYNKLT 498
N+L L I + +K + LD+S N ++
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
+ I LN++HN+L L + F+ Q LD +N ++ K+ P+L + L L V ++ HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVLNLQHN 83
Query: 520 KLS 522
+LS
Sbjct: 84 ELS 86
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 407 LQILDISKKNIFGSLPSCFNPFS-----IKQGKPLNSM-----SGLDLSCNKLTG-EIPL 455
LQ+LD+S+ I + S I G P+ S+ SGL S KL E L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 136
Query: 456 R------IGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKL 497
IG+L + LNV+HN + L FSNL E LDLS NK+
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 90/222 (40%), Gaps = 36/222 (16%)
Query: 255 QMPKHARRHLTYLDVSDN-----FFQVHIPVGNMKSLSVLDLSKNRLIGK-IPERLAMGC 308
Q P + L L + N F +V +P SL LDLS+N L K + G
Sbjct: 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGT 396
Query: 309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQ-LDGNHF-IGEIPESLSNCNLFGGLYLSD 366
SL+YL LS N + + N L +L+ LD H + ++ E +L +YL
Sbjct: 397 ISLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 367 NHLSGKIP--RWLGNLSVSEDVIMPNNHL-EGPIPMEFCQLNFLQILDISKKNIFGSLPS 423
+H ++ LS E + M N E +P F +L L LD+S+ + P+
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 424 CFNPFSIKQG----------------KPLNSMSGLDLSCNKL 449
FN S Q K LNS+ LD S N +
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
P+ N+ +L LD+S N+ + I + +L L+ +NN++ I I LTNL L
Sbjct: 171 PLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNNQI-SDITPLGI-LTNLDEL 225
Query: 339 QLDGNHF--IGEIPESLSNCNLFGGLYLSDNHLSGKIP----RWLGNLSVSEDVIMPNNH 392
L+GN IG + SL+N L L++N +S P L L + + I +
Sbjct: 226 SLNGNQLKDIGTL-ASLTN---LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 281
Query: 393 LEGPIPMEFCQLNFLQILDISK----KNIFGSLPSCFNPFSIKQGKPLNSMSGLD---LS 445
L G + +LN Q+ DIS KN+ L FN +I P++S++ L +
Sbjct: 282 LAGLTALTNLELNENQLEDISPISNLKNLT-YLTLYFN--NISDISPVSSLTKLQRLFFA 338
Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
NK++ L NLT I+ L+ HN+++ L
Sbjct: 339 NNKVSDVSSL--ANLTNINWLSAGHNQISDL 367
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 48/287 (16%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
T+ L + LQ + ++ GV L N+T + N S+NQLT +I+ PLK+L
Sbjct: 38 TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI---NFSNNQLT-DIT--PLKNLT 89
Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA-------------QTESHSLT 187
+ ++ ++NN + PL N +NL NNQI + S++++
Sbjct: 90 KLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 146
Query: 188 PKFQLNSII----LSHGSGVTFPKFLYHQHDLKHVNL-----SHINLRGEFPNWLSENNT 238
L+ + LS G+ VT K L + L+ +++ S I++ + T
Sbjct: 147 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL--------T 198
Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIG 298
L++L+ NN +S I P +L L ++ N + + ++ +L+ LDL+ N++
Sbjct: 199 NLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 256
Query: 299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
P G L L L N++ S LT L L+L+ N
Sbjct: 257 LAP---LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 298
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 55/337 (16%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L L ++ +++N + + P L N+T+L L + +NQ+T PLK+L ++ L+
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 139
Query: 147 LSNNYF-------------------QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
LS+N Q+ L PL N + L+ D +N++ + LT
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 198
Query: 188 PKFQLNSIILSHG--SGVT-------FPKFLYHQHDLKHV-------NLSHINLRGEFPN 231
L S+I ++ S +T + + + LK + NL+ ++L +
Sbjct: 199 ---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 255
Query: 232 WLS--ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
L+ TKL L N +S I P LT L++++N + P+ N+K+L+ L
Sbjct: 256 NLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYL 313
Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
L N + P L+ L +NNK+ S NLTN+ L N
Sbjct: 314 TLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 368
Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
P L+N L L+D + + N+S+ V
Sbjct: 369 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 403
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 401 FCQLNFL--QILDISK-KNIFGSLPSCFNPFSIKQGKPL---NSMSGLDLSCNKLTGEIP 454
Q+NF Q+ DI+ KN+ + N I PL +++GL L N++T P
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 128
Query: 455 LRIGNLTRIHTLNVSHN------KLTGLI-------------LSTFSNLKQTESLDLSYN 495
L+ NLT ++ L +S N L+GL L +NL E LD+S N
Sbjct: 129 LK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
K++ L +L L +N++S TP
Sbjct: 187 KVSDI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 407 LQILDISKKNIFGSLPSCFNPFS-----IKQGKPLNSM-----SGLDLSCNKLTG-EIPL 455
LQ+LD+S+ I + S I G P+ S+ SGL S KL E L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 112
Query: 456 R------IGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKL 497
IG+L + LNV+HN + L FSNL E LDLS NK+
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 89 EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
E +L L + L + P +++SLQVLN++SNQL ++ L S+Q++ L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526
Query: 149 NN 150
N
Sbjct: 527 TN 528
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 48/287 (16%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
T+ L + LQ + ++ GV L N+T + N S+NQLT +I+ PLK+L
Sbjct: 39 TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI---NFSNNQLT-DIT--PLKNLT 90
Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA-------------QTESHSLT 187
+ ++ ++NN + PL N +NL NNQI + S++++
Sbjct: 91 KLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 147
Query: 188 PKFQLNSII----LSHGSGVTFPKFLYHQHDLKHVNL-----SHINLRGEFPNWLSENNT 238
L+ + LS G+ VT K L + L+ +++ S I++ + T
Sbjct: 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL--------T 199
Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIG 298
L++L+ NN +S I P +L L ++ N + + ++ +L+ LDL+ N++
Sbjct: 200 NLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 257
Query: 299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
P G L L L N++ S LT L L+L+ N
Sbjct: 258 LAP---LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 299
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 27/211 (12%)
Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
P+ N+ +L LD+S N+ + I + +L L+ +NN++ I I LTNL L
Sbjct: 172 PLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNNQI-SDITPLGI-LTNLDEL 226
Query: 339 QLDGNHF--IGEIPESLSNCNLFGGLYLSDNHLSGKIP----RWLGNLSVSEDVIMPNNH 392
L+GN IG + SL+N L L++N +S P L L + + I +
Sbjct: 227 SLNGNQLKDIGTL-ASLTN---LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 282
Query: 393 LEGPIPMEFCQLNFLQILDISK----KNIFGSLPSCFNPFSIKQGKPLNSMSGLD---LS 445
L G + +LN Q+ DIS KN+ L FN +I P++S++ L
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLT-YLTLYFN--NISDISPVSSLTKLQRLFFY 339
Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
NK++ L NLT I+ L+ HN+++ L
Sbjct: 340 NNKVSDVSSL--ANLTNINWLSAGHNQISDL 368
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 55/337 (16%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L L ++ +++N + + P L N+T+L L + +NQ+T PLK+L ++ L+
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 140
Query: 147 LSNNYF-------------------QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
LS+N Q+ L PL N + L+ D +N++ + LT
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 199
Query: 188 PKFQLNSIILSHG--SGVT-------FPKFLYHQHDLKHV-------NLSHINLRGEFPN 231
L S+I ++ S +T + + + LK + NL+ ++L +
Sbjct: 200 ---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 256
Query: 232 WLS--ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
L+ TKL L N +S I P LT L++++N + P+ N+K+L+ L
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314
Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
L N + P L+ L NNK+ S NLTN+ L N
Sbjct: 315 TLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369
Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
P L+N L L+D + + N+S+ V
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 401 FCQLNFL--QILDISK-KNIFGSLPSCFNPFSIKQGKPL---NSMSGLDLSCNKLTGEIP 454
Q+NF Q+ DI+ KN+ + N I PL +++GL L N++T P
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 129
Query: 455 LRIGNLTRIHTLNVSHN------KLTGLI-------------LSTFSNLKQTESLDLSYN 495
L+ NLT ++ L +S N L+GL L +NL E LD+S N
Sbjct: 130 LK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
K++ L +L L +N++S TP
Sbjct: 188 KVSDI--SVLAKLTNLESLIATNNQISDITP 216
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 32/279 (11%)
Query: 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
T+ L + LQ + ++ GV L N+T + N S+NQLT PLK+L
Sbjct: 34 TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI---NFSNNQLT---DITPLKNLT 85
Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT--PKFQLNSIILS 198
+ ++ ++NN + PL N +NL NNQI +LT + +L+S +S
Sbjct: 86 KLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 142
Query: 199 HGSGVTFPKFLYHQH------DLKHV-NLSHINLRGEFPNWLSENN-----TKLQTLVQV 246
S ++ L + DLK + NL+ + N +S+ + T L++L+
Sbjct: 143 DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 247 NNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAM 306
NN +S I P +L L ++ N + + ++ +L+ LDL+ N++ P
Sbjct: 203 NNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LS 257
Query: 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
G L L L N++ S LT L L+L+ N
Sbjct: 258 GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 294
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 27/211 (12%)
Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
P+ N+ +L LD+S N+ + I + +L L+ +NN++ I I LTNL L
Sbjct: 167 PLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNNQI-SDITPLGI-LTNLDEL 221
Query: 339 QLDGNHF--IGEIPESLSNCNLFGGLYLSDNHLSGKIP----RWLGNLSVSEDVIMPNNH 392
L+GN IG + SL+N L L++N +S P L L + + I +
Sbjct: 222 SLNGNQLKDIGTL-ASLTN---LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 393 LEGPIPMEFCQLNFLQILDISK----KNIFGSLPSCFNPFSIKQGKPLNSMSGLD---LS 445
L G + +LN Q+ DIS KN+ L FN +I P++S++ L
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNL-TYLTLYFN--NISDISPVSSLTKLQRLFFY 334
Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
NK++ L NLT I+ L+ HN+++ L
Sbjct: 335 NNKVSDVSSL--ANLTNINWLSAGHNQISDL 363
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 55/337 (16%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L L ++ +++N + + P L N+T+L L + +NQ+T PLK+L ++ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 147 LSNNYF-------------------QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
LS+N Q+ L PL N + L+ D +N++ + LT
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 188 PKFQLNSIILSHG--SGVT-------FPKFLYHQHDLKHV-------NLSHINLRGEFPN 231
L S+I ++ S +T + + + LK + NL+ ++L +
Sbjct: 195 ---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 251
Query: 232 WLS--ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
L+ TKL L N +S I P LT L++++N + P+ N+K+L+ L
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
L N + P L+ L NNK+ S NLTN+ L N
Sbjct: 310 TLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 364
Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
P L+N L L+D + + N+S+ V
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 399
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
S+N L+ P L NL+ D++M NN + P+ + +++ +F + +
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-------NLTNLTGLTLFNNQITD 121
Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
+P K L +++ L+LS N ++ +I G LT + LN N++T L +NL
Sbjct: 122 IDPL-----KNLTNLNRLELSSNTIS-DISALSG-LTSLQQLNFG-NQVTDL--KPLANL 171
Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
E LD+S NK++ L +L L +N++S TP
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 407 LQILDISKKNIFGSLPSCFNPFS-----IKQGKPLNSM-----SGLDLSCNKLTG-EIPL 455
LQ+LD+S+ I + S I G P+ S+ SGL S KL E L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 112
Query: 456 R------IGNLTRIHTLNVSHNKLTGLILST-FSNLKQTESLDLSYNKL 497
IG+L + LNV+HN + L FSNL E LDLS NK+
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 407 LQILDISKKNIFGSLPSCFNPFS-----IKQGKPLNSM-----SGLDLSCNKLTG-EIPL 455
LQ+LD+S+ I + S I G P+ S+ SGL S KL E L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 113
Query: 456 R------IGNLTRIHTLNVSHNKLTGLILST-FSNLKQTESLDLSYNKL 497
IG+L + LNV+HN + L FSNL E LDLS NK+
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 407 LQILDISKKNIFGSLPSCFNPFS-----IKQGKPLNSM-----SGLDLSCNKLTG-EIPL 455
LQ+LD+S+ I + S I G P+ S+ SGL S KL E L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVALETNL 114
Query: 456 R------IGNLTRIHTLNVSHNKLTGLILST-FSNLKQTESLDLSYNKL 497
IG+L + LNV+HN + L FSNL E LDLS NK+
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461
C L +Q D+ + + LP + LDL NK+T NL
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPP--------------DTALLDLQNNKITEIKDGDFKNLK 76
Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT---GKIPPQLVEL 508
+HTL + +NK++ + F+ L + E L LS N+L K+P L EL
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461
C L +Q D+ + + LP + LDL NK+T NL
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPP--------------DTALLDLQNNKITEIKDGDFKNLK 76
Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT---GKIPPQLVEL 508
+HTL + +NK++ + F+ L + E L LS N+L K+P L EL
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
LT + LN++HN+L L F L LDLSYN+L +L L + N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 520 KLSGKTPDWV 529
+L PD V
Sbjct: 192 QLKS-VPDGV 200
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 89 EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
+ +L+EL + N L +P +T+L LN++ NQL ++ L ++ EL LS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165
Query: 149 NNYFQ 153
N Q
Sbjct: 166 YNQLQ 170
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 89 EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
E L +L++ N L +P +TSL LN+S+NQL ++ + L ++EL L+
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108
Query: 149 NNYFQ 153
N Q
Sbjct: 109 TNQLQ 113
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 34/235 (14%)
Query: 278 IPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG-------HIFS 327
+P G N L+ L +S N L +I + SL+ L LS+N++ +F
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190
Query: 328 KKINLTNLWRL-------QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL 380
++ L L +LD +H + N L L L N+L+ WL N
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDTA--WLLNY 247
Query: 381 SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
+V + N LE + F ++ L+ L IS + N + G+P+ ++
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----LNLY----GQPIPTLK 298
Query: 441 GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
LDLS N L + R+ L + HN + L LST LK +L LS+N
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHN 349
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
+++EL + N L + L T L++LN+SSN L + L+ L +++ L L+NNY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
Query: 152 FQIPISLGP 160
Q + +GP
Sbjct: 92 VQ-ELLVGP 99
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 156 ISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDL 215
I GP+ + + + E + +TE H P FQ N++I + V + + + H+H
Sbjct: 228 IYTGPIDQYFDYRFGALEYRSLKFETERHEF-PNFQGNAVINFTDANVPYTRIIEHKH-F 285
Query: 216 KHVNLSHINLRGEFP 230
+V H + E+P
Sbjct: 286 DYVETKHTVVTKEYP 300
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 444 LSC--NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
L C N+L G++P G+ ++ +LN+++N++T + + +Q E+L ++NKL K
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL--KY 391
Query: 502 PPQLVELNALAVFSV 516
P + + +++V S
Sbjct: 392 IPNIFDAKSVSVXSA 406
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
+++EL + N L + L T L++LN+SSN L + L+ L +++ L L+NNY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
Query: 152 FQIPISLGP 160
Q + +GP
Sbjct: 92 VQ-ELLVGP 99
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 428 FSIKQGKPLNSMSGLDLSCNKLTGE-------IPLRIGNLTRIHTLNVSHNKLTGLILST 480
FS +Q + +++ LDLS N GE P + + + N TG+ +
Sbjct: 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219
Query: 481 FSNLKQTESLDLSYNKLTGKIPPQ---------LVELN---------------ALAVFSV 516
+ Q SLDLS+N L + P L LN L V +
Sbjct: 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDL 279
Query: 517 AHNKLS-GKTPDWVAQFATFNGSSYDGNPFL 546
+ N+L+ PD + + + DGNPFL
Sbjct: 280 SSNRLNRAPQPD---ELPEVDNLTLDGNPFL 307
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
L E L++L+ NN L + +P L YL VS+N + + N L ++D+
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL----LEYLGVSNNQLEKLPELQNSSFLKIIDVD 161
Query: 293 KNRLIGKIP------ERLAMGCFSLRYLV-LSNNKMKGHIFSKKINLTNLWRLQLD---- 341
N L K+P E +A G L L L N I++ +L L L L
Sbjct: 162 NNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220
Query: 342 --GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP 374
GN+ + E+PE L N +Y +DN+L +P
Sbjct: 221 VAGNNILEELPE-LQNLPFLTTIY-ADNNLLKTLP 253
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L V L+EL + N L + P +TSL+ L + Q+ I LKS++EL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 147 LS-NNYFQIPISL-GPLY 162
LS NN +P L PL+
Sbjct: 233 LSHNNLMSLPHDLFTPLH 250
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
+ L+LS N+L P LT + L + H ++ + + F +LK E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 263 HLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
+LTYL ++ N Q +P G + +L L L +N+L +P+ + +L YL L +N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHN 143
Query: 320 KMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESL-SNCNLFGGLYLSDNHL 369
+++ +F K LTNL RL LD N + +PE + L L+DN L
Sbjct: 144 QLQSLPKGVFDK---LTNLTRLDLDNNQ-LQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 36/236 (15%)
Query: 278 IPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG-------HIFS 327
+P G N L+ L +S N L +I + SL+ L LS+N++ +F
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 196
Query: 328 KKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG--------LYLSDNHLSGKIPRWLGN 379
++ L L + + E+ S ++ N+ G L L N+L+ WL N
Sbjct: 197 ANVSYNLLSTLAIPI--AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLN 252
Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439
+V + N LE + F ++ L+ L IS + N + G+P+ ++
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----LNLY----GQPIPTL 303
Query: 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
LDLS N L + R+ L + HN + L LST LK +L LS+N
Sbjct: 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHN 355
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
L V L+EL + N L + P +TSL+ L + Q+ I LKS++EL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 147 LS-NNYFQIPISL-GPLY 162
LS NN +P L PL+
Sbjct: 233 LSHNNLMSLPHDLFTPLH 250
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
L + L+LS N+L P LT + L + H ++ + + F +LK E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 496 KL 497
L
Sbjct: 237 NL 238
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 332 LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
LTNL L L NH E+ L LS NHL +L E +++ NN
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 392 HLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451
H+ F + LQ L +S+ I S F IK G L + LDLS NKL
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQI-----SRFPVELIKDGNKLPKLMLLDLSSNKLK- 176
Query: 452 EIPL 455
++PL
Sbjct: 177 KLPL 180
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNIFGS 420
LYL DN ++ P +L +++ + +N L G +P+ F L L +LD+ N
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG-TNQLTV 102
Query: 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480
LPS L + L + CNKLT E+P I LT + L + N+L +
Sbjct: 103 LPSAV-------FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 481 FSNL 484
F L
Sbjct: 155 FDRL 158
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 90 FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
++L+EL++ N L +P ++T L VL++ +NQLT
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 82 ILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHL 139
I D HL+EL +D N L VP +TSLQ + + +N + S P + +L
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW--DCSCPRIDYL 369
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 107/280 (38%), Gaps = 53/280 (18%)
Query: 255 QMPKHARRHLTYLDVSDN-----FFQVHIPVGNMKSLSVLDLSKNRLIGK-IPERLAMGC 308
Q P + L L + N F +V +P SL LDLS+N L K + G
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQ-LDGNHF-IGEIPESLSNCNLFGGLYLSD 366
SL+YL LS N + + N L +L+ LD H + ++ E +L +YL
Sbjct: 373 TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 367 NHLSGKIP--RWLGNLSVSEDVIMPNNHL-EGPIPMEFCQLNFLQILDISKKNIFGSLPS 423
+H ++ LS E + M N E +P F +L L LD+S+ + P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSN 483
FN +L+ + LN+SHN L +
Sbjct: 489 AFN--------------------------------SLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 484 LKQTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLS 522
L + LD S N + +L ++LA ++ N +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|2JGQ|A Chain A, Kinetics And Structural Properties Of Triosephosphate
Isomerase From Helicobacter Pylori
pdb|2JGQ|B Chain B, Kinetics And Structural Properties Of Triosephosphate
Isomerase From Helicobacter Pylori
Length = 233
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG 475
+ FG LP+ F F+ L + C TGEI + +IHTL + H++
Sbjct: 41 DFFGLLPNSFLHFT------LGVQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRT 94
Query: 476 LILSTFSNLKQ 486
L+ + S LK+
Sbjct: 95 LLKESPSFLKE 105
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSY 494
L S+ L KL IG L + LNV+HN + L + FSNL +DLSY
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 495 N 495
N
Sbjct: 158 N 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSY 494
L S+ L KL IG L + LNV+HN + L + FSNL +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 495 N 495
N
Sbjct: 163 N 163
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 438 SMSGLDLSCN-KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496
S SG + C+ K +P I T++ L + N++T L F L Q LDL N+
Sbjct: 8 SCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 497 LTGKIPPQLVELNALAVFSVAHNKL 521
LT +L L S+ N+L
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,882,989
Number of Sequences: 62578
Number of extensions: 743017
Number of successful extensions: 2383
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1681
Number of HSP's gapped (non-prelim): 441
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)