Query 040607
Match_columns 629
No_of_seqs 408 out of 4387
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-59 3E-64 541.0 38.0 524 1-548 57-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.3E-59 1.8E-63 534.6 38.4 498 43-547 70-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.3E-42 5.1E-47 337.8 7.5 334 206-551 118-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.6E-42 5.6E-47 337.5 4.0 408 65-532 50-463 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.2E-40 4.8E-45 310.4 -16.5 450 44-522 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.7E-39 5.9E-44 303.1 -16.9 457 61-546 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-36 3.1E-41 313.0 -5.1 480 17-542 3-509 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.1E-34 2.5E-39 299.0 -4.0 464 11-519 20-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.8E-33 1E-37 274.6 -5.5 344 187-547 29-376 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 271.1 -3.8 368 63-497 4-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 6E-30 1.3E-34 240.2 -3.1 291 39-345 64-358 (498)
12 KOG4237 Extracellular matrix p 99.9 2.9E-27 6.2E-32 222.3 -3.2 424 46-519 50-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.6E-22 7.7E-27 230.8 26.1 347 83-496 550-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.7E-26 226.3 26.5 324 57-416 549-880 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 4.4E-21 9.6E-26 205.6 16.0 265 213-529 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.6E-20 5.6E-25 199.7 17.0 261 46-377 205-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 187.7 13.4 246 214-522 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.9E-18 1.3E-22 183.0 14.4 246 191-474 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-19 3.9E-24 181.5 -1.3 230 308-545 50-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.3E-23 175.9 -1.0 280 217-521 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.5E-18 5.5E-23 143.8 -3.9 174 360-547 36-213 (264)
22 KOG0617 Ras suppressor protein 99.6 4.1E-18 9E-23 142.5 -5.9 183 331-527 31-217 (264)
23 PLN03150 hypothetical protein; 99.5 4.7E-14 1E-18 152.5 10.0 111 438-548 419-530 (623)
24 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-12 4.1E-17 114.3 1.6 125 43-173 20-148 (175)
25 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.3E-17 130.5 -0.9 170 336-522 78-247 (722)
26 PLN03150 hypothetical protein; 99.2 4.2E-11 9.1E-16 129.7 11.0 113 406-526 419-532 (623)
27 PF14580 LRR_9: Leucine-rich r 99.2 4.9E-12 1.1E-16 111.7 2.9 111 62-179 15-127 (175)
28 KOG3207 Beta-tubulin folding c 99.2 6.9E-12 1.5E-16 121.1 1.2 181 237-417 120-313 (505)
29 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 120.7 7.3 63 437-502 232-294 (394)
30 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.8E-15 119.5 7.2 179 333-527 116-295 (394)
31 KOG1909 Ran GTPase-activating 99.1 9E-12 2E-16 117.0 -2.2 86 436-521 212-310 (382)
32 KOG0532 Leucine-rich repeat (L 99.0 7.3E-12 1.6E-16 124.7 -4.4 174 284-475 75-248 (722)
33 KOG1259 Nischarin, modulator o 99.0 2.1E-11 4.5E-16 111.9 -1.1 131 43-181 285-415 (490)
34 KOG3207 Beta-tubulin folding c 99.0 4.8E-11 1E-15 115.3 0.5 206 212-417 120-338 (505)
35 KOG1259 Nischarin, modulator o 99.0 6.2E-11 1.3E-15 108.9 1.1 131 382-526 285-416 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.8E-15 83.7 3.0 60 66-126 1-60 (61)
37 KOG1909 Ran GTPase-activating 99.0 8.3E-11 1.8E-15 110.7 1.6 141 208-348 87-256 (382)
38 PF13855 LRR_8: Leucine rich r 99.0 2.2E-10 4.8E-15 83.1 3.1 61 461-521 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.5E-10 5.4E-15 118.4 -1.3 246 259-526 69-322 (414)
40 KOG0531 Protein phosphatase 1, 98.8 5.6E-10 1.2E-14 115.8 -0.1 265 214-502 50-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 4E-09 8.6E-14 116.9 3.3 126 44-175 525-652 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 2.1E-08 4.5E-13 111.3 6.4 277 213-500 523-809 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 3.9E-10 8.4E-15 115.6 -7.3 163 5-177 102-291 (1096)
44 KOG1859 Leucine-rich repeat pr 98.6 4.6E-10 9.9E-15 115.0 -9.3 108 436-548 186-294 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 6.8E-09 1.5E-13 95.7 -3.7 177 335-520 187-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.3E-13 94.4 -4.5 179 141-344 186-374 (419)
47 KOG2982 Uncharacterized conser 98.3 2.7E-07 5.8E-12 85.4 2.1 85 282-367 69-156 (418)
48 KOG2982 Uncharacterized conser 98.2 2.5E-07 5.5E-12 85.5 0.5 85 64-150 69-156 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.2 1.8E-07 3.9E-12 85.3 -1.4 94 8-103 26-132 (388)
50 KOG1644 U2-associated snRNP A' 98.2 3E-06 6.4E-11 74.3 5.7 126 45-176 22-151 (233)
51 KOG4579 Leucine-rich repeat (L 98.2 9.5E-08 2E-12 77.9 -3.5 81 439-522 55-136 (177)
52 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 7.9E-11 55.6 3.0 35 68-104 3-37 (44)
53 KOG4579 Leucine-rich repeat (L 98.0 6.9E-07 1.5E-11 73.0 -0.6 88 280-370 49-136 (177)
54 COG5238 RNA1 Ran GTPase-activa 98.0 2.9E-06 6.3E-11 77.7 3.2 138 208-346 87-255 (388)
55 KOG1644 U2-associated snRNP A' 98.0 8.1E-06 1.8E-10 71.6 5.5 107 68-180 21-128 (233)
56 KOG4341 F-box protein containi 98.0 2.1E-07 4.6E-12 90.1 -5.7 281 207-516 158-459 (483)
57 KOG3665 ZYG-1-like serine/thre 97.9 2.6E-06 5.7E-11 92.3 0.9 137 42-180 122-265 (699)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 53.4 3.2 36 462-498 2-37 (44)
59 KOG3665 ZYG-1-like serine/thre 97.9 7.2E-06 1.6E-10 89.0 3.6 131 66-199 122-259 (699)
60 PF13306 LRR_5: Leucine rich r 97.9 5.3E-05 1.2E-09 64.6 7.7 84 61-149 7-90 (129)
61 KOG4341 F-box protein containi 97.7 7.7E-07 1.7E-11 86.4 -6.3 111 282-392 318-437 (483)
62 PF13306 LRR_5: Leucine rich r 97.7 8.8E-05 1.9E-09 63.2 6.6 117 43-168 13-129 (129)
63 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 72.3 8.7 76 280-368 48-123 (426)
64 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 71.9 7.7 138 352-519 47-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.3 5.4E-05 1.2E-09 69.6 0.5 112 58-174 35-152 (260)
66 KOG2123 Uncharacterized conser 97.3 6E-06 1.3E-10 75.9 -6.2 102 64-171 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00037 7.9E-09 64.3 2.7 91 86-179 38-130 (260)
68 KOG2123 Uncharacterized conser 96.4 0.00014 3.1E-09 67.1 -5.0 99 238-339 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.1 0.00079 1.7E-08 72.0 -2.3 62 283-344 242-306 (482)
70 KOG1947 Leucine rich repeat pr 95.7 0.00076 1.7E-08 72.1 -4.3 113 64-177 186-307 (482)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.0093 2E-07 32.6 0.5 16 68-84 2-17 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.018 3.8E-07 31.5 1.3 12 463-474 2-13 (22)
73 KOG4308 LRR-containing protein 93.7 0.0012 2.6E-08 68.8 -8.7 171 7-179 110-304 (478)
74 KOG4308 LRR-containing protein 93.6 0.001 2.2E-08 69.3 -9.5 34 264-297 89-128 (478)
75 PF13504 LRR_7: Leucine rich r 93.4 0.056 1.2E-06 27.3 1.5 13 67-79 2-14 (17)
76 smart00369 LRR_TYP Leucine-ric 93.0 0.082 1.8E-06 30.2 2.0 20 92-111 3-22 (26)
77 smart00370 LRR Leucine-rich re 93.0 0.082 1.8E-06 30.2 2.0 20 92-111 3-22 (26)
78 smart00369 LRR_TYP Leucine-ric 92.9 0.081 1.7E-06 30.2 1.9 18 115-133 2-19 (26)
79 smart00370 LRR Leucine-rich re 92.9 0.081 1.7E-06 30.2 1.9 18 115-133 2-19 (26)
80 PF13504 LRR_7: Leucine rich r 92.5 0.078 1.7E-06 26.8 1.3 10 117-126 3-12 (17)
81 KOG0473 Leucine-rich repeat pr 90.6 0.0077 1.7E-07 54.5 -6.1 84 436-522 41-124 (326)
82 KOG3864 Uncharacterized conser 90.3 0.043 9.2E-07 48.9 -1.8 82 43-124 102-185 (221)
83 PF13516 LRR_6: Leucine Rich r 89.8 0.12 2.6E-06 28.8 0.4 21 12-32 2-22 (24)
84 KOG0473 Leucine-rich repeat pr 89.6 0.0091 2E-07 54.1 -6.6 88 61-153 37-124 (326)
85 TIGR00864 PCC polycystin catio 87.0 0.24 5.1E-06 61.0 0.7 42 491-532 1-43 (2740)
86 KOG3864 Uncharacterized conser 85.5 0.062 1.4E-06 47.9 -3.7 82 92-174 102-185 (221)
87 KOG4242 Predicted myosin-I-bin 82.1 4.4 9.6E-05 41.3 7.0 61 116-177 215-280 (553)
88 PF04478 Mid2: Mid2 like cell 79.0 1.6 3.6E-05 37.0 2.4 47 561-607 50-96 (154)
89 TIGR00864 PCC polycystin catio 76.3 1.5 3.4E-05 54.4 2.2 32 467-498 1-32 (2740)
90 smart00365 LRR_SD22 Leucine-ri 75.7 2.5 5.4E-05 24.1 1.8 11 93-103 4-14 (26)
91 smart00368 LRR_RI Leucine rich 71.5 2.5 5.3E-05 24.6 1.2 17 12-28 2-18 (28)
92 smart00364 LRR_BAC Leucine-ric 68.8 3.7 8.1E-05 23.3 1.5 13 486-498 3-15 (26)
93 PF15102 TMEM154: TMEM154 prot 67.9 4.9 0.00011 34.0 2.7 23 569-591 66-88 (146)
94 PF12191 stn_TNFRSF12A: Tumour 66.8 2.7 5.8E-05 34.2 0.9 22 573-594 90-111 (129)
95 PF12273 RCR: Chitin synthesis 61.8 4.7 0.0001 34.0 1.5 23 566-588 4-26 (130)
96 KOG4242 Predicted myosin-I-bin 59.5 70 0.0015 33.1 9.3 59 44-102 216-279 (553)
97 KOG3763 mRNA export factor TAP 58.5 4.9 0.00011 41.9 1.2 14 510-523 271-284 (585)
98 smart00367 LRR_CC Leucine-rich 52.1 7.8 0.00017 21.9 0.9 17 12-28 2-19 (26)
99 KOG3763 mRNA export factor TAP 42.6 14 0.0003 38.8 1.6 33 262-294 218-254 (585)
100 PF08374 Protocadherin: Protoc 33.1 27 0.00059 31.7 1.7 27 559-585 35-61 (221)
101 PF06365 CD34_antigen: CD34/Po 30.9 53 0.0011 29.9 3.2 36 549-585 89-124 (202)
102 PF02009 Rifin_STEVOR: Rifin/s 28.2 42 0.0009 32.8 2.2 6 614-619 281-286 (299)
103 PF07219 HemY_N: HemY protein 26.6 57 0.0012 26.4 2.5 9 610-618 49-57 (108)
104 PF06084 Cytomega_TRL10: Cytom 25.1 46 0.001 26.4 1.5 9 540-548 32-40 (150)
105 PF15050 SCIMP: SCIMP protein 24.0 16 0.00035 29.4 -1.1 20 564-583 9-28 (133)
106 smart00082 LRRCT Leucine rich 22.0 43 0.00093 22.3 0.8 8 543-551 1-8 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-59 Score=541.00 Aligned_cols=524 Identities=28% Similarity=0.381 Sum_probs=309.1
Q ss_pred CCccchhcc-CCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhc-CCCCCCEEEccCCcC
Q 040607 1 CCSFLIELH-NLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSNSRL 78 (629)
Q Consensus 1 ~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l 78 (629)
||+|...-+ +..+++.|||++|.+.+..+..++.+ +.|++|+|++|.+.+.+|..+. .+++|++|+|++|.+
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l------~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRL------PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCC------CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence 566653332 24466666666666666666555554 3566666666666666665443 666666666666666
Q ss_pred CCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCC
Q 040607 79 NGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISL 158 (629)
Q Consensus 79 ~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 158 (629)
++.+|. ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+++..+
T Consensus 131 ~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p- 205 (968)
T PLN00113 131 TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP- 205 (968)
T ss_pred ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-
Confidence 554443 2345566666666666555555566666666666666665544444 55666666666666665554333
Q ss_pred cccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccC-CCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcC
Q 040607 159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHG-SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237 (629)
Q Consensus 159 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 237 (629)
..+.++++|+.|++++|.+....+ ..+..+.+|+.|+++++ ..+.+|..+..+++|++|++++|++.+.+|..+ ..+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 283 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSL 283 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhc
Confidence 345555666666666655543222 12344455555555522 233455555555555555555555555555544 345
Q ss_pred CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV 315 (629)
Q Consensus 238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 315 (629)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.+|..+.. +++|+.|+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~ 362 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLD 362 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEE
Confidence 555555555555555545455555555555555555544333 444555555555555555444443332 44555555
Q ss_pred ccCcccccccCcccCC------------------------CCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC
Q 040607 316 LSNNKMKGHIFSKKIN------------------------LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG 371 (629)
Q Consensus 316 L~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (629)
+++|++.+..|..+.. +++|+.|++++|.+++..|..+..++.|+.|++++|.+.+
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 5555555444444444 4444555555554444444444445555555555555544
Q ss_pred CccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCC
Q 040607 372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451 (629)
Q Consensus 372 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 451 (629)
..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+.. +++|+.|++++|.+.+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS--------LSELMQLKLSENKLSG 513 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh--------hhccCEEECcCCccee
Confidence 444444445555555555555544444433 2345555555555555555555544 6777888888888877
Q ss_pred CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccc
Q 040607 452 EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQ 531 (629)
Q Consensus 452 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 531 (629)
.+|..+..+++|++|+|++|.+++.+|..|.++++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|.. +.
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~ 592 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GA 592 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-ch
Confidence 77777888888888888888888878888888888888888888888788888888888888888888888877763 55
Q ss_pred ccccCCCCCCCCCCCCC
Q 040607 532 FATFNGSSYDGNPFLSS 548 (629)
Q Consensus 532 ~~~l~~l~~~~np~~c~ 548 (629)
+.++....+.|||..|+
T Consensus 593 ~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 593 FLAINASAVAGNIDLCG 609 (968)
T ss_pred hcccChhhhcCCccccC
Confidence 66667777888888875
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.3e-59 Score=534.58 Aligned_cols=498 Identities=30% Similarity=0.421 Sum_probs=434.1
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.++.|++++|.+++..+.++..+++|++|+|++|.+++.+|...+..+++|++|++++|++++..|. ..+++|++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 5779999999999999999999999999999999999889986677999999999999999877663 56899999999
Q ss_pred ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEec-cCC
Q 040607 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGS 201 (629)
Q Consensus 123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-~~~ 201 (629)
++|.+++.+|. .++++++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+ ..+..+.+|+.|+++ +..
T Consensus 148 s~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 148 SNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred cCCcccccCCh-HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCcc
Confidence 99999877776 89999999999999999886665 478999999999999999865443 345677899999999 445
Q ss_pred CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--
Q 040607 202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-- 279 (629)
Q Consensus 202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-- 279 (629)
...+|..+..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 56789999999999999999999998889886 789999999999999998888889999999999999999987766
Q ss_pred CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 359 (629)
+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 78899999999999999988887665 49999999999999999999999999999999999999988888888888888
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc---------
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI--------- 430 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--------- 430 (629)
+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+.+..+..+..+..
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 88888888887777777777788888888888777777777777777777777777776655543322110
Q ss_pred ------ccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcc
Q 040607 431 ------KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ 504 (629)
Q Consensus 431 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 504 (629)
......++|+.|++++|.+++..|..+..+++|+.|+|++|.+++.+|..+.++++|++|++++|.+++.+|..
T Consensus 463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 00112467888999999998888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 505 LVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 505 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
|..+++|+.|++++|++++.+|..+..+..++.+++++|++.+
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999988999999999999999876
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-42 Score=337.81 Aligned_cols=334 Identities=22% Similarity=0.245 Sum_probs=270.2
Q ss_pred ChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCC
Q 040607 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNM 283 (629)
Q Consensus 206 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~ 283 (629)
|.......++++|+|.+|.|+..-.+.+ +.++.|+.|+|+.|.|+.+....|..-.++++|+|++|.++.... |..+
T Consensus 118 P~f~~~sghl~~L~L~~N~I~sv~se~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 118 PRFGHESGHLEKLDLRHNLISSVTSEEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred ccccccccceeEEeeeccccccccHHHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc
Confidence 3333334457777777777764444443 677778888888888888877777777788888888888875544 7778
Q ss_pred CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607 284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363 (629)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 363 (629)
.+|..|.|++|+++ .+|...|+.+++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+
T Consensus 197 nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 197 NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 88888888888888 88888888888888888888888766567788888888888888888877778888888888888
Q ss_pred ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607 364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD 443 (629)
Q Consensus 364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 443 (629)
++.|+++..-..|+.++++|+.|++++|.+....++.+..+++|++|+++.|+++...+..+.. +..|+.|+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~Ln 347 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELN 347 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH--------HHHhhhhc
Confidence 8888888777888888888899999998888888888888889999999999888888877766 78888899
Q ss_pred cccccCCCCCccccccccccceEeccCccccccccc---cccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607 444 LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS---TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK 520 (629)
Q Consensus 444 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 520 (629)
|+.|.++..-..+|.++++|++|||++|.++..+.+ .|.++++|+.|++.+|+|..+...+|.++++|++||+.+|.
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 999988866667888889999999999988766543 57788889999999999886666788889999999999999
Q ss_pred CcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 521 LSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 521 l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
|...-|..|..+ .|..+.+..-.++| +|.
T Consensus 428 iaSIq~nAFe~m-~Lk~Lv~nSssflC-DCq 456 (873)
T KOG4194|consen 428 IASIQPNAFEPM-ELKELVMNSSSFLC-DCQ 456 (873)
T ss_pred ceeecccccccc-hhhhhhhcccceEE-ecc
Confidence 888888888877 77888777778888 444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-42 Score=337.50 Aligned_cols=408 Identities=21% Similarity=0.240 Sum_probs=276.1
Q ss_pred CCC-CCEEEccCCcCCCccCccccCCC--CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCC
Q 040607 65 MTS-LKLLSLSNSRLNGTILDQGLCEF--VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS 141 (629)
Q Consensus 65 l~~-L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~ 141 (629)
|+. -+.||.+++.+. .+....+.+. +.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||. .-+...+
T Consensus 50 c~c~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sgh 126 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGH 126 (873)
T ss_pred CCCCceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccc
Confidence 444 345788888776 4433233332 24567999999999988888999999999999999998 8886 3344456
Q ss_pred CCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEcc
Q 040607 142 IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLS 221 (629)
Q Consensus 142 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~ 221 (629)
|+.|+|.+|.|+ .+....+..++.|+.||++.|.+...... .+..-.++++|+|+
T Consensus 127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~------------------------sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP------------------------SFPAKVNIKKLNLA 181 (873)
T ss_pred eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC------------------------CCCCCCCceEEeec
Confidence 999999999887 55556788888888888888887654321 13333467777777
Q ss_pred CCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccc--ccCCCCCCccEEeccCCCCCcc
Q 040607 222 HINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVH--IPVGNMKSLSVLDLSKNRLIGK 299 (629)
Q Consensus 222 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~L~~L~L~~n~l~~~ 299 (629)
+|+|++.. ..-|..+.+|..|.|++|+++.++...|..+++|+.|+|..|.+... ..|..+++|+.|.+..|.+. .
T Consensus 182 ~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-k 259 (873)
T KOG4194|consen 182 SNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-K 259 (873)
T ss_pred cccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-c
Confidence 77776333 33345666777777777777777777777677777777776665532 22666777777777777766 5
Q ss_pred cchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccC
Q 040607 300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379 (629)
Q Consensus 300 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 379 (629)
+.+..|.++.++++|+|+.|++...-..++.+++.|+.|++++|.|..+-++.++.+++|+.|+++.|.++...+..|..
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 66666666777777777777776666666666777777777777766666666666777777777777766655666666
Q ss_pred CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459 (629)
Q Consensus 380 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 459 (629)
+..|++|+|+.|.+.......|..+.+|+.||++.|.+...+.+ -...|.+
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-----------------------------aa~~f~g 390 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----------------------------AAVAFNG 390 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----------------------------chhhhcc
Confidence 66666666666666544444555555555555555554332222 2235667
Q ss_pred ccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-Cccccc
Q 040607 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQF 532 (629)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~ 532 (629)
+++|+.|+|.+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|.+..-.+.|.|. .|+.+|
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 7777777777777777777777778888888888887777777777777 77777776666666555 454444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=310.41 Aligned_cols=450 Identities=24% Similarity=0.334 Sum_probs=267.0
Q ss_pred cceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607 44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123 (629)
Q Consensus 44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 123 (629)
++.+.+++|.+.. +-+.+.++..|.+|++++|.++ +.|+ +++.+..++.++.++|++..+++ .+..+.+|+.++.+
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhcc
Confidence 3455555555553 2333555566666666666655 5554 55555556666666665554433 45555566666666
Q ss_pred cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203 (629)
Q Consensus 124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (629)
+|.+. .+++ .++.+-.|+.++..+|+++ ..+ ..+.++.+|..+++.+|.+....+.. .....|++++...+...
T Consensus 123 ~n~~~-el~~-~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~~~~--i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 123 SNELK-ELPD-SIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALPENH--IAMKRLKHLDCNSNLLE 196 (565)
T ss_pred cccee-ecCc-hHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCCHHH--HHHHHHHhcccchhhhh
Confidence 66555 5554 5555555666666555554 333 24455555555555555554443322 11344555555555555
Q ss_pred CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCC
Q 040607 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGN 282 (629)
Q Consensus 204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~ 282 (629)
++|..++.+.+|+-|++..|++. .+| . |.+++.|.++.+..|.+..++..-..+++++..||+.+|++...+. +..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH
Confidence 55555555555555555555554 444 2 1455555555555555555444444455555555555555554333 334
Q ss_pred CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc-------------------------------------
Q 040607 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI------------------------------------- 325 (629)
Q Consensus 283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------------------- 325 (629)
+.+|+.||+++|.++ .+|..... + +|+.|.+.+|.+..+-
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 445555555555555 44444442 3 5555555555442100
Q ss_pred -Cccc---CCCCCCcEEEccCCcCcccCchhhhccc--cCCceeccccccCCCccccccCCCCCccc-cCCCCcccCCCC
Q 040607 326 -FSKK---INLTNLWRLQLDGNHFIGEIPESLSNCN--LFGGLYLSDNHLSGKIPRWLGNLSVSEDV-IMPNNHLEGPIP 398 (629)
Q Consensus 326 -~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~ 398 (629)
+..| ..+.+.+.|++++-+++....+.|..-. -...++++.|++. ..|..+..+..+.+. .+++|.+ +.+|
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccch
Confidence 0011 1233466677777777644444444322 2667788888776 566655555544443 4444444 3677
Q ss_pred ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccc
Q 040607 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL 478 (629)
Q Consensus 399 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 478 (629)
..++.+++|..|++++|.+ ...|..+.. +..|+.|+++.|.+. ..|........++.+-.++|++..+.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~L-n~LP~e~~~--------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLL-NDLPEEMGS--------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred HHHHhhhcceeeecccchh-hhcchhhhh--------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence 7888888888888887766 445555544 667888888888887 778887777778888888888888888
Q ss_pred ccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
+.+.++++|..||+.+|.+. .+|..++++++|++|+++||+|.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 87888888888888888888 67778888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=303.07 Aligned_cols=457 Identities=25% Similarity=0.317 Sum_probs=356.6
Q ss_pred hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607 61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140 (629)
Q Consensus 61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~ 140 (629)
....-..|+.|++++|.++ .+.+ .+..+..|.+|++++|+++..+| +++.+..++.++.++|.++ .+|+ .++.+.
T Consensus 40 ~wW~qv~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~ 114 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPE-QIGSLI 114 (565)
T ss_pred hhhhhcchhhhhhccCchh-hccH-hhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccH-HHhhhh
Confidence 3444567999999999997 5554 78999999999999999998877 7889999999999999998 9998 899999
Q ss_pred CCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEc
Q 040607 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNL 220 (629)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L 220 (629)
+|+.|+.++|.+. ..+ ..++.+..|+.++..+|.+.+.++. +..+.++..+.+..+...++|...-.++.|++++.
T Consensus 115 ~l~~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhcccccee-ecC-chHHHHhhhhhhhccccccccCchH--HHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 9999999999987 455 3688899999999999999877653 45566788888887777777766666999999999
Q ss_pred cCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCc
Q 040607 221 SHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIG 298 (629)
Q Consensus 221 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~ 298 (629)
..|.+. .+|+.+ +.+.+|+-|++..|++..++ .|.++..|++++++.|++..... ...++++.+||+..|++.
T Consensus 191 ~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 191 NSNLLE-TLPPEL-GGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred chhhhh-cCChhh-cchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-
Confidence 998887 788887 68899999999999998876 78899999999999998875544 568889999999999998
Q ss_pred ccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchh--------------------------
Q 040607 299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPES-------------------------- 352 (629)
Q Consensus 299 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------- 352 (629)
++|..+.. +.+|++||+++|.+++ .|..++++ .|+.|-+.+|.+.++--+.
T Consensus 266 e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 266 EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 89998885 8889999999999984 56778888 8999999999874321100
Q ss_pred ---------------hhccccCCceeccccccCCCccccccC--CCCCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607 353 ---------------LSNCNLFGGLYLSDNHLSGKIPRWLGN--LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415 (629)
Q Consensus 353 ---------------~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 415 (629)
.....+.++|++++-+++.+....|.. -.-....+++.|++. .+|..+..+..+.+.-...|
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 111223444555555554222222221 112445566666665 44544444444443333334
Q ss_pred cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495 (629)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 495 (629)
+..+.+|..++. +++|+.|+|++|.+. .+|..++++..|+.||++.|++. ..|.....+..++.+-.++|
T Consensus 422 n~isfv~~~l~~--------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 422 NKISFVPLELSQ--------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNN 491 (565)
T ss_pred CccccchHHHHh--------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence 444666666655 889999999999988 78888899999999999999887 45777777777888888889
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL 546 (629)
Q Consensus 496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~ 546 (629)
++....|+.+.++.+|..||+.+|.+.. +|..++.+.+++.+.++|||+.
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 9997777779999999999999999994 5555899999999999999985
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=313.00 Aligned_cols=480 Identities=24% Similarity=0.279 Sum_probs=267.6
Q ss_pred EEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEE
Q 040607 17 LTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQEL 96 (629)
Q Consensus 17 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 96 (629)
+|.+.+++ ..+|..+.+- +.+..|+++.|-+...-.+.+.+.-+|+.||+++|.+. ..|. .++.+++|+.|
T Consensus 3 vd~s~~~l-~~ip~~i~~~------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~l 73 (1081)
T KOG0618|consen 3 VDASDEQL-ELIPEQILNN------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQL 73 (1081)
T ss_pred cccccccC-cccchhhccH------HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhc
Confidence 45555554 3444444332 23566777766654332334445555777777777776 6665 57777777777
Q ss_pred EccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCc
Q 040607 97 HVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQ 176 (629)
Q Consensus 97 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 176 (629)
.++.|.|..++ .+..++.+|++++|.+|.+. ..|. .+..+++|++|+++.|.+. .+|. .+..+..+..+..++|.
T Consensus 74 n~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 74 NLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNE 148 (1081)
T ss_pred ccchhhHhhCc-hhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcch
Confidence 77777776554 46667777777777777776 6665 6777777777777777765 4553 45566666666666661
Q ss_pred -ceeecCCCCcCCcccccEEEec-cCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccC
Q 040607 177 -IYAQTESHSLTPKFQLNSIILS-HGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIF 254 (629)
Q Consensus 177 -~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 254 (629)
+.... ...++.+++. +.....++..+..++. .+++++|.+. ... ...+.+|+.+....|.++...
T Consensus 149 ~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~ 215 (1081)
T KOG0618|consen 149 KIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE 215 (1081)
T ss_pred hhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE
Confidence 11111 1124444444 2222334444444433 4777777655 111 134455555555555554432
Q ss_pred CCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCC
Q 040607 255 QMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTN 334 (629)
Q Consensus 255 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 334 (629)
. .-++++.|+.++|.+.....-.-..+|+.++++.|+++ .+|+++.. +.+|+.++..+|++. ..|..+....+
T Consensus 216 ~----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 216 I----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred e----cCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhh
Confidence 1 22445555555555553333333445555555555555 45544443 555555555555553 33344444455
Q ss_pred CcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccc-------------------------cCCCCCccccCC
Q 040607 335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWL-------------------------GNLSVSEDVIMP 389 (629)
Q Consensus 335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~ 389 (629)
|+.|++.+|.+. -+|....+++.|++|++..|.+....+..+ ...+.|+.|++.
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 555555555544 233344445555555555555442111111 124566666777
Q ss_pred CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS 469 (629)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 469 (629)
+|.+++.....+.++..|+.|+|++|.+......++.+ ++.|++|+||+|.++ .+|..+..++.|++|...
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhc--------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 77776666566666677777777777765555555544 666777777777776 566666677777777777
Q ss_pred CccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607 470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG 542 (629)
Q Consensus 470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~ 542 (629)
+|.+...+ .+..++.|+.+|++.|+++...-..-..-++|++||++||.......+.+..++.+...+++-
T Consensus 439 sN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 439 SNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred CCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 77776443 466677777777777776633222111226677777777765444444444554444444433
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.1e-34 Score=298.99 Aligned_cols=464 Identities=22% Similarity=0.237 Sum_probs=308.2
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF 90 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 90 (629)
...+..|+++.|.+-......... .-.|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+|. +..++
T Consensus 20 ~~~~~~ln~~~N~~l~~pl~~~~~------~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~ 90 (1081)
T KOG0618|consen 20 NEALQILNLRRNSLLSRPLEFVEK------RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNM 90 (1081)
T ss_pred HHHHHhhhccccccccCchHHhhh------eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhh
Confidence 334677777777542221111111 123778888888876 57777888888888888888887 7774 77888
Q ss_pred CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607 91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170 (629)
Q Consensus 91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 170 (629)
.+|+++.|.+|.+... |..+..+++|+.|++++|.+. .+|. .+..++.++.+..++|..... ++... .+.+
T Consensus 91 ~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~ 161 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKL 161 (1081)
T ss_pred hcchhheeccchhhcC-chhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh-----hcccc-chhh
Confidence 8888888888877654 447888888888888888887 7776 777778888888877722111 11111 5555
Q ss_pred ECCCCcceeecCCCCcCCccccc-EEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc
Q 040607 171 DSENNQIYAQTESHSLTPKFQLN-SIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY 249 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 249 (629)
++..|.+...... ....++ .|+++.+... ...+..+.+|+.+....|++.... -..++++.|+.++|.
T Consensus 162 ~l~~n~l~~~~~~----~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLI----DIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhcccchhc----chhhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCc
Confidence 5555544322211 111222 2555544333 223445555666666666554211 123556666666666
Q ss_pred ccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcc
Q 040607 250 LSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK 328 (629)
Q Consensus 250 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 328 (629)
++..... .-..+++++++++|++..... +..+.+|+.++..+|+++ .+|..++. ..+|++|++..|.+. .+|..
T Consensus 231 l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 231 LTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred ceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCc
Confidence 6532221 123456666666666654444 555666666666666665 56666554 556666666666665 33344
Q ss_pred cCCCCCCcEEEccCCcCcccCch-----------------------hh--hccccCCceeccccccCCCccccccCCCCC
Q 040607 329 KINLTNLWRLQLDGNHFIGEIPE-----------------------SL--SNCNLFGGLYLSDNHLSGKIPRWLGNLSVS 383 (629)
Q Consensus 329 ~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 383 (629)
..++..|++|++..|++....+. .. ...+.|+.|.+.+|.+++..-..+.+...|
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 44566666666666655421110 11 123457888999999988777778889999
Q ss_pred ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607 384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI 463 (629)
Q Consensus 384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 463 (629)
+.|+|++|.+.......+.+++.|++|+++||.+.. +|.+... ++.|+.|...+|.+. ..| .+..++.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~--------~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVAN--------LGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHh--------hhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 999999999997777789999999999999999955 4577766 899999999999998 777 78899999
Q ss_pred ceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607 464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 519 (629)
+.+|+|.|+++......-..-++|++||+++|.-.......|..+.++...++.-|
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999999998764333333389999999999855466677777888888888766
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-33 Score=274.63 Aligned_cols=344 Identities=25% Similarity=0.289 Sum_probs=288.0
Q ss_pred CCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc-CCCCcccCCCcc
Q 040607 187 TPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI-FQMPKHARRHLT 265 (629)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~ 265 (629)
...++++.|.+.......+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.+.+.+|.+... .|..+-.+..|+
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccce
Confidence 3444555555555555678999999999999999999987 444443 6889999999999987643 334455789999
Q ss_pred EEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCc
Q 040607 266 YLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH 344 (629)
Q Consensus 266 ~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 344 (629)
.|||++|++...+. +...+++-+|+|++|+|. .||..+|..+..|-+|||++|++.. .|.....+.+|++|++++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCCh
Confidence 99999999986554 777788999999999998 9999999999999999999999984 55567889999999999998
Q ss_pred CcccCchhhhccccCCceeccccccC-CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC
Q 040607 345 FIGEIPESLSNCNLFGGLYLSDNHLS-GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS 423 (629)
Q Consensus 345 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 423 (629)
+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+.+.++++|+.|++++|.++...-
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~- 262 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM- 262 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-
Confidence 76444455666778899999886543 468889999999999999999998 789999999999999999999865332
Q ss_pred CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccc-ccccccCCCCCCEEECcCCcCCCCCC
Q 040607 424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL-ILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
+... -.+|+.|++|.|+++ ..|.++..++.|+.|++.+|+++-. +|..++.+..|+.+..++|.+. ..|
T Consensus 263 ~~~~--------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 263 TEGE--------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred cHHH--------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 2222 468999999999999 8899999999999999999987632 5788999999999999999998 899
Q ss_pred ccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 503 PQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 503 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
+.+..++.|+.|.+++|++. ..|..+-.++.++.+++..||-+-
T Consensus 333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 99999999999999999998 567667888999999999999764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-32 Score=271.08 Aligned_cols=368 Identities=24% Similarity=0.298 Sum_probs=229.1
Q ss_pred cCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCC
Q 040607 63 KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSI 142 (629)
Q Consensus 63 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L 142 (629)
+-++-.|-.|+++|.++|.--+.....+.+++.|.|...++..+ |+.++.+.+|++|.+++|++. ++-. .++.++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhh
Confidence 34566777889999888543333778888889999888888665 457888888999999988887 5543 68888888
Q ss_pred CEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccC
Q 040607 143 QELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSH 222 (629)
Q Consensus 143 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~ 222 (629)
+.+.+.+|.+..+.-+..+..+..|..||+++|++. +.|..+...+++-.|+|++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEccc
Confidence 888888888764333345667888888888887763 3566777778888888888
Q ss_pred CCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccc--cCCCCCCccEEeccCCCCC-cc
Q 040607 223 INLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHI--PVGNMKSLSVLDLSKNRLI-GK 299 (629)
Q Consensus 223 n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~~L~~L~L~~n~l~-~~ 299 (629)
|+|. .+|..++-+++.|-.|++++|++...+| ....+..|++|+|++|.+.... .+..+++|++|.+++.+-+ ..
T Consensus 136 N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 136 NNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred Cccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence 8887 7888877888888888888888776655 3445667777777777665322 1445566666666665432 23
Q ss_pred cchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccC
Q 040607 300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379 (629)
Q Consensus 300 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 379 (629)
+|..+.. +.+|..+|++.|.+. ..|..+..+++|+.|++++|+++.. ......-.+|++|++|+|+++ .+|.++..
T Consensus 214 ~Ptsld~-l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcK 289 (1255)
T KOG0444|consen 214 IPTSLDD-LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCK 289 (1255)
T ss_pred CCCchhh-hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhh
Confidence 4444443 555566666665555 4455555555555555555555422 222222334555555555554 44555555
Q ss_pred CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459 (629)
Q Consensus 380 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 459 (629)
++.|+.|+..+|.++ ...+|..++. +.+|+.+..++|.+. .+|+.+..
T Consensus 290 L~kL~kLy~n~NkL~-----------------------FeGiPSGIGK--------L~~Levf~aanN~LE-lVPEglcR 337 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLT-----------------------FEGIPSGIGK--------LIQLEVFHAANNKLE-LVPEGLCR 337 (1255)
T ss_pred hHHHHHHHhccCccc-----------------------ccCCccchhh--------hhhhHHHHhhccccc-cCchhhhh
Confidence 555555555555442 1233444433 444444555555544 45555555
Q ss_pred ccccceEeccCccccccccccccCCCCCCEEECcCCcC
Q 040607 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497 (629)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 497 (629)
|..|+.|.|++|++-. .|+++.-++.|+.||+..|.-
T Consensus 338 C~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hHHHHHhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence 5555555555555442 344455555555555555543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.95 E-value=6e-30 Score=240.24 Aligned_cols=291 Identities=19% Similarity=0.146 Sum_probs=183.1
Q ss_pred chhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccC-CcCccCCCcccCCCCCC
Q 040607 39 MVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDH-NNLYGVPPWCLGNMTSL 117 (629)
Q Consensus 39 ~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L 117 (629)
.+|+...+++|+.|+|+..-+.+|+.+++||.||||+|.|+ .|.+++|.++++|..|-+.+ |+|++++.+.|.++..|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45677789999999999888899999999999999999998 88777999999988887766 89999999999999999
Q ss_pred CeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEe
Q 040607 118 QVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIIL 197 (629)
Q Consensus 118 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 197 (629)
+.|.+.-|.+. .++.++|..+++|..|.+.+|.+. .+....|..+..++.+.+..|++.......+.....
T Consensus 143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~------- 213 (498)
T KOG4237|consen 143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL------- 213 (498)
T ss_pred HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHH-------
Confidence 99999999998 888889999999999999999887 677778999999999999988865443322111100
Q ss_pred ccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcE-EeccCccccccCCCCcccCCCccEEEccCCCCcc
Q 040607 198 SHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT-LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQV 276 (629)
Q Consensus 198 ~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 276 (629)
...|..++...-..-..+.+.++...-+..+......+.+ +....+....-+...|..+++|++|++++|+++.
T Consensus 214 -----a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 214 -----AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred -----hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0011222222222223333333332222222111011100 0111111111122234444555555555555443
Q ss_pred ccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC
Q 040607 277 HIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345 (629)
Q Consensus 277 ~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 345 (629)
..+ |.....+++|.|..|++. .+...+|.++.+|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 333 445555555555555554 55555555555555556666655555555555555555555555544
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-27 Score=222.29 Aligned_cols=424 Identities=18% Similarity=0.206 Sum_probs=264.8
Q ss_pred eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccc-
Q 040607 46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS- 124 (629)
Q Consensus 46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~- 124 (629)
..+-++-.++ .+|+.+. +.-..++|..|.|+ .||+++|+.+++|+.|||++|.|+.|.|++|.++++|.+|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3444444454 3454433 24677999999999 99999999999999999999999999999999999998887776
Q ss_pred ccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCC
Q 040607 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT 204 (629)
Q Consensus 125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 204 (629)
|+|+ .+|.++|+++..|+.|.+.-|++. -+..+.|..+++|..|.+.+|.+.....
T Consensus 126 NkI~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~---------------------- 181 (498)
T KOG4237|consen 126 NKIT-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK---------------------- 181 (498)
T ss_pred Cchh-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc----------------------
Confidence 8999 999999999999999999999887 5666789999999999999998865443
Q ss_pred cChhhcCCCCCCEEEccCCCCC-C-----------CCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEE--Ec-
Q 040607 205 FPKFLYHQHDLKHVNLSHINLR-G-----------EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL--DV- 269 (629)
Q Consensus 205 ~~~~l~~~~~L~~L~L~~n~l~-~-----------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L--~L- 269 (629)
..+..+..++++.+..|.+- + ..|.. +++........+.+.++..+.+..|... ++.+ .+
T Consensus 182 --~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~ 256 (498)
T KOG4237|consen 182 --GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLS 256 (498)
T ss_pred --ccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhc
Confidence 13566677888888877622 1 11111 1233333444444555554444444222 2222 11
Q ss_pred cCCCCccccc---CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCc
Q 040607 270 SDNFFQVHIP---VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346 (629)
Q Consensus 270 ~~n~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 346 (629)
+.+.....-| |..+++|++|++++|+++ .+.+..|.+..++++|.|..|++......+|.++..|+.|++.+|+|+
T Consensus 257 ~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 257 SEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 1222222333 777888888888888887 677777777888888888888887777777888888888888888888
Q ss_pred ccCchhhhccccCCceeccccccCCCc-cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC---CC
Q 040607 347 GEIPESLSNCNLFGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS---LP 422 (629)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~ 422 (629)
...|.+|.....|.+|++-.|.+...- -.|++. .+......+..+ .+.-..++.+++++..+... .|
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ 406 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGP 406 (498)
T ss_pred EEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCCCCC--CCCCchhccccchhccccccccCCc
Confidence 888888888888888888777664211 111111 011111111111 11112344444544433111 11
Q ss_pred CCcCCCcc-ccCCCccCCC-eeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607 423 SCFNPFSI-KQGKPLNSMS-GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500 (629)
Q Consensus 423 ~~~~~~~~-~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (629)
+...-... .-...++-+. ....|+..++ .+|..+ .....+|++.+|.++.++.+ .+.+| .+|+++|+++..
T Consensus 407 ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~L 479 (498)
T KOG4237|consen 407 EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSL 479 (498)
T ss_pred cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehh
Confidence 11000000 0000122222 2344444444 333322 13456677777777655433 34556 677777777755
Q ss_pred CCccccCCCCCCEEEcccC
Q 040607 501 IPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 501 ~~~~~~~l~~L~~L~l~~N 519 (629)
....|.++++|..|-+++|
T Consensus 480 sn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 480 SNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccccchhhhheeEEecC
Confidence 5566777777777776665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.6e-22 Score=230.75 Aligned_cols=347 Identities=19% Similarity=0.207 Sum_probs=176.9
Q ss_pred CccccCCCCCCcEEEccCCcC------ccCCCcccCCCC-CCCeeecccccCCcccCccccCCCCCCCEEEccCcccccc
Q 040607 83 LDQGLCEFVHLQELHVDHNNL------YGVPPWCLGNMT-SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIP 155 (629)
Q Consensus 83 ~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 155 (629)
...+|.++++|++|.+.++.. ....|..|..++ +|+.|.+.++.+. .+|. .+ ...+|++|++.++.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc-c
Confidence 334566666666666654321 111233344432 4666666666555 5554 33 3455666666655554 2
Q ss_pred cCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHh
Q 040607 156 ISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE 235 (629)
Q Consensus 156 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 235 (629)
++ ..+..+++|+.|+++++.. ...+|. +..+++|++|++++|.....+|..+ .
T Consensus 626 L~-~~~~~l~~Lk~L~Ls~~~~------------------------l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~ 678 (1153)
T PLN03210 626 LW-DGVHSLTGLRNIDLRGSKN------------------------LKEIPD-LSMATNLETLKLSDCSSLVELPSSI-Q 678 (1153)
T ss_pred cc-cccccCCCCCEEECCCCCC------------------------cCcCCc-cccCCcccEEEecCCCCccccchhh-h
Confidence 22 2234455555555554321 223343 5566778888888776555677665 5
Q ss_pred cCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607 236 NNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV 315 (629)
Q Consensus 236 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 315 (629)
.+++|+.|++++|......+... .+++|+.|++++|......| ....+|+.|++++|.+. .+|..+ .+++|++|+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~ 753 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIE-EFPSNL--RLENLDELI 753 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCccc-cccccc--ccccccccc
Confidence 67777777777654322222222 45666666666654332222 12345556666666554 445433 245555555
Q ss_pred ccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccC
Q 040607 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG 395 (629)
Q Consensus 316 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 395 (629)
+.++..... .. .+....+..+...++|+.|++++|.....+|..++.+++|+.|++++|...+
T Consensus 754 l~~~~~~~l-~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 754 LCEMKSEKL-WE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccchhhc-cc----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 544321100 00 0000111112223455555555555544555555555666666665554333
Q ss_pred CCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCc-ccc
Q 040607 396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHN-KLT 474 (629)
Q Consensus 396 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 474 (629)
.+|... .+++|+.|++++|......|.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++| ++.
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc-----------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 444433 4566666666666543333321 345666666666666 55666666666666666664 343
Q ss_pred ccccccccCCCCCCEEECcCCc
Q 040607 475 GLILSTFSNLKQTESLDLSYNK 496 (629)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~N~ 496 (629)
. .+..+..+++|+.+++++|.
T Consensus 884 ~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 R-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-cCcccccccCCCeeecCCCc
Confidence 3 34445556666666666663
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=226.30 Aligned_cols=324 Identities=18% Similarity=0.170 Sum_probs=170.3
Q ss_pred cchhhhcCCCCCCEEEccCCcC------CCccCccccCCCC-CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc
Q 040607 57 NFLQVIKSMTSLKLLSLSNSRL------NGTILDQGLCEFV-HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG 129 (629)
Q Consensus 57 ~~~~~l~~l~~L~~L~Ls~n~l------~~~i~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 129 (629)
..+.+|.++++|+.|.+..+.. ...+|. .|..++ +|+.|.+.++.+..++. .| ...+|+.|++++|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCcccc-
Confidence 3456788999999999976532 223554 566654 69999999998877765 44 5789999999999988
Q ss_pred ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEec-cCCCCCcChh
Q 040607 130 NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGSGVTFPKF 208 (629)
Q Consensus 130 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~ 208 (629)
.++. .+..+++|++|+++++.....++ .+..+++|+.|++++|......+ ..+..+.+|+.|+++ +.....+|..
T Consensus 625 ~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 625 KLWD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCc
Confidence 7776 78889999999999875433444 47778889999998875422211 122334455555555 2333344443
Q ss_pred hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccE
Q 040607 209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSV 288 (629)
Q Consensus 209 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~ 288 (629)
+ .+++|+.|++++|.....+|. ..++|+.|++++|.+..++.. + .+++|++|++.++.......
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~--------- 764 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWE--------- 764 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccc-c-cccccccccccccchhhccc---------
Confidence 3 345555555555533323332 123455555555544433221 1 23444444444322110000
Q ss_pred EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccc
Q 040607 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH 368 (629)
Q Consensus 289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 368 (629)
.+. .++...+..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.
T Consensus 765 ------~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 765 ------RVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ------ccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 000 0111111123345555555544444444444455555555555443332333332 34445555555443
Q ss_pred cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607 369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416 (629)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 416 (629)
....+|.. .++++.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 33222221 134444555555444 334444445555555555433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.4e-21 Score=205.56 Aligned_cols=265 Identities=24% Similarity=0.269 Sum_probs=197.7
Q ss_pred CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292 (629)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~ 292 (629)
.+-..|+++++.++ .+|..+. ++++.|++.+|.++.++. .+++|++|++++|+++.... ..++|+.|+++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC--cccccceeecc
Confidence 34667888888887 6777653 478888888888887653 35788999999988886543 35688899999
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK 372 (629)
Q Consensus 293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (629)
+|.+. .+|.. +.+|+.|++++|+++.. |. ..++|+.|++++|.+++. |.. ..+|+.|++++|.+..
T Consensus 271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 271 SNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred CCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-
Confidence 98887 56652 45788899999988854 33 246789999999988753 432 2357788888888874
Q ss_pred ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC
Q 040607 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452 (629)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 452 (629)
+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----------~~~L~~LdLs~N~Lt-~ 396 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------PSGLKELIVSGNRLT-S 396 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------ccccceEEecCCccc-C
Confidence 4432 2478899999999885 4432 3578888999988865 4432 457889999999998 4
Q ss_pred CccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529 (629)
Q Consensus 453 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 529 (629)
+|.. .++|+.|++++|.++++ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 397 LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5543 36799999999999875 332 346888999999998 678888899999999999999998777654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.6e-20 Score=199.69 Aligned_cols=261 Identities=21% Similarity=0.246 Sum_probs=141.0
Q ss_pred eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc
Q 040607 46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125 (629)
Q Consensus 46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 125 (629)
.|+++.+.++ .+|..+. ++|+.|++++|.++ .+|. ..++|++|++++|+++.+++ ..++|+.|++++|
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN 272 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCC
Confidence 5666666666 3555554 35666777766666 5553 23566677777666665543 1356666666666
Q ss_pred cCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCc
Q 040607 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF 205 (629)
Q Consensus 126 ~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 205 (629)
.++ .+|. . .++|+.|++++|.++ .++. ..++|+.|++++|.+...
T Consensus 273 ~L~-~Lp~-l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L------------------------- 317 (788)
T PRK15387 273 PLT-HLPA-L---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL------------------------- 317 (788)
T ss_pred chh-hhhh-c---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-------------------------
Confidence 665 5543 1 245666666666665 2331 235566666666665433
Q ss_pred ChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCC
Q 040607 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKS 285 (629)
Q Consensus 206 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 285 (629)
|.. ...|+.|++++|+++ .+|.. ..+|+.|++++|.++.++.. ..+|+.|++++|.+...... ..+
T Consensus 318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l--~~~ 383 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL--PSG 383 (788)
T ss_pred CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc--ccc
Confidence 221 112444555555554 23321 13455555555555543321 23455555555555532221 235
Q ss_pred ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS 365 (629)
Q Consensus 286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (629)
|+.|++++|.+. .+|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 384 L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 666666666665 44432 2456666666666654 2322 234566666666665 456666666666666666
Q ss_pred ccccCCCccccc
Q 040607 366 DNHLSGKIPRWL 377 (629)
Q Consensus 366 ~n~l~~~~~~~~ 377 (629)
+|++++..+..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 666665554444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=187.73 Aligned_cols=246 Identities=25% Similarity=0.325 Sum_probs=122.9
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~ 293 (629)
+...|++++++++ .+|..+. +.++.|++++|.++.++...+ .+|+.|++++|.+... |..-..+|+.|++++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSI-PATLPDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccC-ChhhhccccEEECcC
Confidence 4566777777666 4555432 456677777776665543222 3566666666665532 212223566666666
Q ss_pred CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373 (629)
Q Consensus 294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (629)
|.+. .+|..+. .+|++|++++|+++. +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L---- 316 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL---- 316 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc----
Confidence 6655 5555442 356666666666553 333322 355555665555542 222221 2344444554444
Q ss_pred cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607 374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI 453 (629)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 453 (629)
+. +|..+ .++|+.|++++|.+.+ +|..+ +++|+.|++++|+++ .+
T Consensus 317 --------------------t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------~~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 317 --------------------TA-LPETL--PPGLKTLEAGENALTS-LPASL----------PPELQVLDVSKNQIT-VL 361 (754)
T ss_pred --------------------cc-CCccc--cccceeccccCCcccc-CChhh----------cCcccEEECCCCCCC-cC
Confidence 42 22211 1345555555555433 23222 345555555555555 34
Q ss_pred ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcccc----CCCCCCEEEcccCcCc
Q 040607 454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV----ELNALAVFSVAHNKLS 522 (629)
Q Consensus 454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~l~~N~l~ 522 (629)
|..+ .++|+.|+|++|.++.+++ .+. .+|+.|++++|+++ .+|..+. ..+++..+++.+|+++
T Consensus 362 P~~l--p~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 362 PETL--PPTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Chhh--cCCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4333 2455666666665554332 222 24555666666655 3343322 2355566666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=5.9e-18 Score=182.98 Aligned_cols=246 Identities=21% Similarity=0.281 Sum_probs=169.3
Q ss_pred cccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEcc
Q 040607 191 QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS 270 (629)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 270 (629)
+...|++.+.....+|..+. +.++.|++++|+++ .+|..++ ++|+.|++++|.++.++.. + ..+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPAT-L--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChh-h--hccccEEECc
Confidence 56788888777777887653 47999999999998 6787653 5899999999999876542 2 3579999999
Q ss_pred CCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc
Q 040607 271 DNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP 350 (629)
Q Consensus 271 ~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 350 (629)
+|.+... |-.-..+|+.|++++|.+. .+|..+. ++|++|++++|+++.. |..+. ++|+.|++++|.++. +|
T Consensus 250 ~N~L~~L-P~~l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRITEL-PERLPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccCcC-ChhHhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence 9998844 3223458999999999998 7887653 5899999999999854 44332 579999999999884 44
Q ss_pred hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607 351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430 (629)
Q Consensus 351 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 430 (629)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|++... |..+
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l----- 386 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-PENL----- 386 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-CHhH-----
Confidence 433 2578888888888774 454332 56667777776665 334333 24666666666666532 3222
Q ss_pred ccCCCccCCCeeecccccCCCCCcccc----ccccccceEeccCcccc
Q 040607 431 KQGKPLNSMSGLDLSCNKLTGEIPLRI----GNLTRIHTLNVSHNKLT 474 (629)
Q Consensus 431 ~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~ 474 (629)
...|+.|++++|+++ .+|..+ ..++.+..|++.+|+++
T Consensus 387 -----~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 -----PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -----HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 234666666666665 333322 22355566666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.8e-19 Score=181.49 Aligned_cols=230 Identities=21% Similarity=0.228 Sum_probs=136.0
Q ss_pred CCCCcEEEccCccccc------ccCcccCCCCCCcEEEccCCcCcccCchhhhcccc---CCceeccccccCC----Ccc
Q 040607 308 CFSLRYLVLSNNKMKG------HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL---FGGLYLSDNHLSG----KIP 374 (629)
Q Consensus 308 ~~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~ 374 (629)
.+.+++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..+.. |++|++++|.+.+ .+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 3445555555554431 11233444556666666666555444444444443 6666666665542 112
Q ss_pred ccccCC-CCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCC----CCCcCCCccccCCCccCCCeeecc
Q 040607 375 RWLGNL-SVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSL----PSCFNPFSIKQGKPLNSMSGLDLS 445 (629)
Q Consensus 375 ~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~~L~~L~L~ 445 (629)
..+..+ +.|+.+++++|.+++. .+..+..+++|++|++++|.+.+.. +..+.. .++|+.|+++
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~ 201 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--------NCNLEVLDLN 201 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--------CCCCCEEecc
Confidence 233444 6666667766666532 2334556667888888877765321 111111 4578888888
Q ss_pred cccCCCC----CccccccccccceEeccCcccccccccccc-----CCCCCCEEECcCCcCCC----CCCccccCCCCCC
Q 040607 446 CNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTFS-----NLKQTESLDLSYNKLTG----KIPPQLVELNALA 512 (629)
Q Consensus 446 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~ 512 (629)
+|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+.+.+..+++|+
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 8877633 233456678899999999888764332222 23789999999998862 2234455567899
Q ss_pred EEEcccCcCccc----CCCccccc-cccCCCCCCCCCC
Q 040607 513 VFSVAHNKLSGK----TPDWVAQF-ATFNGSSYDGNPF 545 (629)
Q Consensus 513 ~L~l~~N~l~~~----~~~~~~~~-~~l~~l~~~~np~ 545 (629)
.+++++|++... ....+..+ ..++.+++.+|||
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999998854 22333334 6778888888886
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1e-18 Score=175.93 Aligned_cols=280 Identities=23% Similarity=0.168 Sum_probs=145.8
Q ss_pred EEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc----CCCCcccCCCccEEEccCCCCcccc--------cCCCCC
Q 040607 217 HVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI----FQMPKHARRHLTYLDVSDNFFQVHI--------PVGNMK 284 (629)
Q Consensus 217 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~--------~~~~~~ 284 (629)
.|+|..+.+.+..-..++..+..++.++++++.++.. ....+...+.+++++++++.+.... .+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777776444444456667788888888776432 1222334455667777666554200 034455
Q ss_pred CccEEeccCCCCCcccchhhhhCCC---CCcEEEccCccccc----ccCcccCCC-CCCcEEEccCCcCcccCchhhhcc
Q 040607 285 SLSVLDLSKNRLIGKIPERLAMGCF---SLRYLVLSNNKMKG----HIFSKKINL-TNLWRLQLDGNHFIGEIPESLSNC 356 (629)
Q Consensus 285 ~L~~L~L~~n~l~~~~~~~~~~~~~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 356 (629)
+|+.|++++|.+.+..+..+.. +. +|++|++++|++.+ .....+..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----- 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE----- 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-----
Confidence 6666666666554322222221 22 25555555555442 111122233 4555555555554421110
Q ss_pred ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCCCcCCCcccc
Q 040607 357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ 432 (629)
Q Consensus 357 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 432 (629)
.++..+..++.|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.....+.. .
T Consensus 156 ---------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~ 216 (319)
T cd00116 156 ---------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE----T 216 (319)
T ss_pred ---------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH----H
Confidence 1122233344455555555544421 1222334456666666666554222111100 0
Q ss_pred CCCccCCCeeecccccCCCCCccccc-----cccccceEeccCcccccc----ccccccCCCCCCEEECcCCcCCCC---
Q 040607 433 GKPLNSMSGLDLSCNKLTGEIPLRIG-----NLTRIHTLNVSHNKLTGL----ILSTFSNLKQTESLDLSYNKLTGK--- 500 (629)
Q Consensus 433 ~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--- 500 (629)
...+++|+.|++++|.+++.....+. ..+.|+.|++++|.+++. ....+..+++|+++++++|.++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 11256677777777776642222221 236888888888888632 234456668889999999988844
Q ss_pred -CCccccCC-CCCCEEEcccCcC
Q 040607 501 -IPPQLVEL-NALAVFSVAHNKL 521 (629)
Q Consensus 501 -~~~~~~~l-~~L~~L~l~~N~l 521 (629)
....+... +.|+.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 33344444 6888888888875
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.5e-18 Score=143.80 Aligned_cols=174 Identities=24% Similarity=0.416 Sum_probs=100.6
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 439 (629)
+.|.+++|+++ ..|..+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|.+ ...|..|+. ++.|
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs--------~p~l 104 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGS--------FPAL 104 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCC--------Cchh
Confidence 33444444444 23333444444444444444444 3344444455555555554444 334444444 4555
Q ss_pred CeeecccccCCC-CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607 440 SGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH 518 (629)
Q Consensus 440 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 518 (629)
+.|||++|++.. ..|..|..+..|+.|+|++|.+. +.|...+++++|+.|.+..|.+. ..|..++.++.|+.|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 555555555532 45666667777777777777775 34555677777777777777776 6677777777777888888
Q ss_pred CcCcccCCCccccc---cccCCCCCCCCCCCC
Q 040607 519 NKLSGKTPDWVAQF---ATFNGSSYDGNPFLS 547 (629)
Q Consensus 519 N~l~~~~~~~~~~~---~~l~~l~~~~np~~c 547 (629)
|+++...|. ++.+ .+-+......|||.-
T Consensus 183 nrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 183 NRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 877755554 3443 222345678899864
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=4.1e-18 Score=142.55 Aligned_cols=183 Identities=25% Similarity=0.431 Sum_probs=134.5
Q ss_pred CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEE
Q 040607 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL 410 (629)
Q Consensus 331 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 410 (629)
.+.++..|-+++|+++ .+|..+..+.+|+.|++++|++. ..|..+++++.|+.|+++-|.+. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445556666666666 44555666666777777766666 56666667777777777766666 677777888888888
Q ss_pred EcccCcCCC-CCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCE
Q 040607 411 DISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTES 489 (629)
Q Consensus 411 ~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 489 (629)
|+++|++.. ..|..|.. +..|+.|+|++|.+. .+|..++.+++|+.|.+..|.+-. .|..++.++.|++
T Consensus 108 dltynnl~e~~lpgnff~--------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lre 177 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY--------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRE 177 (264)
T ss_pred hccccccccccCCcchhH--------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHH
Confidence 888877743 44555544 788889999999998 888899999999999999999875 4677899999999
Q ss_pred EECcCCcCCCCCCccccCCC---CCCEEEcccCcCcccCCC
Q 040607 490 LDLSYNKLTGKIPPQLVELN---ALAVFSVAHNKLSGKTPD 527 (629)
Q Consensus 490 L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~N~l~~~~~~ 527 (629)
|++.+|+++ .+|..+..+. +=+.+.+.+|++...+.+
T Consensus 178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 999999999 6666666543 335566778888765553
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=4.7e-14 Score=152.45 Aligned_cols=111 Identities=31% Similarity=0.486 Sum_probs=102.0
Q ss_pred CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607 438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517 (629)
Q Consensus 438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 517 (629)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCccccc-cccCCCCCCCCCCCCC
Q 040607 518 HNKLSGKTPDWVAQF-ATFNGSSYDGNPFLSS 548 (629)
Q Consensus 518 ~N~l~~~~~~~~~~~-~~l~~l~~~~np~~c~ 548 (629)
+|++++.+|..+... .++..+++.+|+..|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999876653 4567788999999994
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=1.9e-12 Score=114.34 Aligned_cols=125 Identities=22% Similarity=0.359 Sum_probs=45.0
Q ss_pred ccceeeccCcccCccchhhhc-CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 43 FIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
.+++|+|++|.|+.+ +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+|+.+.+.....+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 456777777777743 3354 4677888888888887 665 477778888888888888776542223577888888
Q ss_pred cccccCCcccC-ccccCCCCCCCEEEccCcccccccC--CcccCCCCCCcEEECC
Q 040607 122 ISSNQLTGNIS-SPPLKHLKSIQELKLSNNYFQIPIS--LGPLYNHSNLKIFDSE 173 (629)
Q Consensus 122 L~~n~l~~~i~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~l~ 173 (629)
+++|+|. .+. -..+..+++|++|++.+|+++.... ...+..+|+|+.||-.
T Consensus 95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888776 332 2346667788888888887763211 1234567777777754
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=1e-12 Score=130.55 Aligned_cols=170 Identities=29% Similarity=0.454 Sum_probs=104.2
Q ss_pred cEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607 336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415 (629)
Q Consensus 336 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 415 (629)
...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|++. ..|..++.++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44566666655 45556666666666666666655 55556666666666666666666 4555555555 666666666
Q ss_pred cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495 (629)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 495 (629)
+++ ..|..++. .+.|..||.+.|.+. ..|..+.++.+|+.|++..|++.+.+++ +..+ .|..||+|.|
T Consensus 154 kl~-~lp~~ig~--------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 154 KLT-SLPEEIGL--------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCN 221 (722)
T ss_pred ccc-cCCccccc--------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccC
Confidence 663 33333333 566666666666666 5566666666666666666666655433 3333 3666677777
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 496 KLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
+++ .+|-.|..+..|++|-|.+|+++
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC
Confidence 666 56666666667777777776666
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=4.2e-11 Score=129.67 Aligned_cols=113 Identities=27% Similarity=0.455 Sum_probs=102.8
Q ss_pred cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607 406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK 485 (629)
Q Consensus 406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 485 (629)
.++.|++++|.+.+.+|..+.. +++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4788999999999999988877 89999999999999999999999999999999999999999999999999
Q ss_pred CCCEEECcCCcCCCCCCccccCC-CCCCEEEcccCcCcccCC
Q 040607 486 QTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 486 ~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 526 (629)
+|+.|++++|++++.+|..+... .++..+++.+|+..|..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999988764 467889999998776544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=4.9e-12 Score=111.70 Aligned_cols=111 Identities=29% Similarity=0.417 Sum_probs=45.6
Q ss_pred hcCCCCCCEEEccCCcCCCccCccccC-CCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCcccc-CCC
Q 040607 62 IKSMTSLKLLSLSNSRLNGTILDQGLC-EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPL-KHL 139 (629)
Q Consensus 62 l~~l~~L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l-~~l 139 (629)
+.+...+++|+|++|.|+ .|. .+. .+.+|+.|++++|.|+.+. .+..++.|++|++++|+|+ .++. .+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISE-GLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CH-HHHHH-
T ss_pred cccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-cccc-chHHhC
Confidence 456667999999999998 665 355 5789999999999999876 5888999999999999998 7764 34 468
Q ss_pred CCCCEEEccCcccccccCCcccCCCCCCcEEECCCCccee
Q 040607 140 KSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA 179 (629)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 179 (629)
++|++|++++|.+........+..+++|+.|++.+|++..
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999999999854555678899999999999999854
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.9e-12 Score=121.05 Aligned_cols=181 Identities=23% Similarity=0.191 Sum_probs=98.1
Q ss_pred CCCCcEEeccCccccccCC-CCcccCCCccEEEccCCCCccccc----CCCCCCccEEeccCCCCCcccchhhhhCCCCC
Q 040607 237 NTKLQTLVQVNNYLSGIFQ-MPKHARRHLTYLDVSDNFFQVHIP----VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSL 311 (629)
Q Consensus 237 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 311 (629)
+.+|+.+.+.++.+..... .....+++++.|||+.|-+....+ ...+|+|+.|+++.|++.-.........+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445555555554443322 233455666666666665554443 45667777777777776533333333346677
Q ss_pred cEEEccCcccccc-cCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc-cccccCCCCCccccCC
Q 040607 312 RYLVLSNNKMKGH-IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMP 389 (629)
Q Consensus 312 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 389 (629)
+.|.++.|.++.. +......+|+|+.|++.+|...........-+..|+.|||++|.+.... -...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 7777777776521 1223345677777777777433233333444556777777777665221 1334556777777777
Q ss_pred CCcccCCC-Ccc-----ccCCCcccEEEcccCcC
Q 040607 390 NNHLEGPI-PME-----FCQLNFLQILDISKKNI 417 (629)
Q Consensus 390 ~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l 417 (629)
.|.+.... |+. ...+++|++|++..|++
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 77665431 111 23344455555555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.2e-10 Score=120.67 Aligned_cols=63 Identities=40% Similarity=0.686 Sum_probs=30.9
Q ss_pred cCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607 437 NSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 437 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
.++..+.+.+|++. ..+..+..+++++.|++++|.++.+.. +..+.+++.|++++|.++...|
T Consensus 232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 34444444444443 223444455555555555555554332 4555555555555555554433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.7e-10 Score=119.50 Aligned_cols=179 Identities=32% Similarity=0.427 Sum_probs=122.7
Q ss_pred CCCcEEEccCCcCcccCchhhhccc-cCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEE
Q 040607 333 TNLWRLQLDGNHFIGEIPESLSNCN-LFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILD 411 (629)
Q Consensus 333 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 411 (629)
+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..++.|+.|++++|++.. ++......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 44555555555554 2233333332 5555666666555 333445566666666666666663 333333667788888
Q ss_pred cccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEE
Q 040607 412 ISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD 491 (629)
Q Consensus 412 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 491 (629)
+++|.+....+.. .. +..|+.|++++|.+. ..+..+..+.++..+.+++|++... +..+..+++++.|+
T Consensus 193 ls~N~i~~l~~~~-~~--------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~ 261 (394)
T COG4886 193 LSGNKISDLPPEI-EL--------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLD 261 (394)
T ss_pred ccCCccccCchhh-hh--------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceec
Confidence 8888875544431 11 456899999999654 5667788899999999999998753 56678889999999
Q ss_pred CcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607 492 LSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527 (629)
Q Consensus 492 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 527 (629)
+++|.++...+ +..+.+++.|++++|.+....+.
T Consensus 262 ~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 262 LSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccccccc--ccccCccCEEeccCccccccchh
Confidence 99999995443 88899999999999999876664
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=9e-12 Score=117.05 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred ccCCCeeecccccCCCC----CccccccccccceEeccCccccccccccc-----cCCCCCCEEECcCCcCCCC----CC
Q 040607 436 LNSMSGLDLSCNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTF-----SNLKQTESLDLSYNKLTGK----IP 502 (629)
Q Consensus 436 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~ 502 (629)
+++|+.|||.+|-++.. +...+..+++|+.|++++|.+......+| ...++|+.|.+.+|.|+.. +.
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 44444444444444321 12233444555555555555443322111 1235555555555555411 11
Q ss_pred ccccCCCCCCEEEcccCcC
Q 040607 503 PQLVELNALAVFSVAHNKL 521 (629)
Q Consensus 503 ~~~~~l~~L~~L~l~~N~l 521 (629)
......+.|+.|++++|.+
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 1223345566666666665
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=7.3e-12 Score=124.68 Aligned_cols=174 Identities=25% Similarity=0.414 Sum_probs=111.6
Q ss_pred CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607 284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363 (629)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 363 (629)
..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..+..+..|..++++.|+++ ..|..+..++ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 33445677777777 67766654 566777777777766 45666677777777777777776 4455554443 56677
Q ss_pred ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607 364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD 443 (629)
Q Consensus 364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 443 (629)
+++|+++ ..|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+....++.. . -.|..||
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~---------LpLi~lD 217 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S---------LPLIRLD 217 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C---------Cceeeee
Confidence 7777776 55666666677777777777766 455566666677777776666644333322 1 2455666
Q ss_pred cccccCCCCCccccccccccceEeccCccccc
Q 040607 444 LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG 475 (629)
Q Consensus 444 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 475 (629)
++.|++. .+|-.|..|+.|++|-|.+|.++.
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 6666666 566666666666666666666653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=2.1e-11 Score=111.94 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=92.4
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.|.++|||+|.|+ .+.++..-.|.++.|++|+|.+. .+. .+..+++|+.||||+|.++.+.. +=.++-+.+.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhh-hHhhhcCEeeeeh
Confidence 4567788888777 45666777778888888888876 554 37777788888888887765543 3345677778888
Q ss_pred ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeec
Q 040607 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181 (629)
Q Consensus 123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 181 (629)
+.|.+. ++. +++++-+|.+||+++|+|........++++|.|+++.+.+|++....
T Consensus 360 a~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 888776 443 57777778888888887764334456777888888888888775443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.8e-11 Score=115.35 Aligned_cols=206 Identities=18% Similarity=0.111 Sum_probs=101.0
Q ss_pred CCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCC--CCcccCCCccEEEccCCCCccccc---CCCCCCc
Q 040607 212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ--MPKHARRHLTYLDVSDNFFQVHIP---VGNMKSL 286 (629)
Q Consensus 212 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~---~~~~~~L 286 (629)
+++|+.+.++++...........+.++.++.|+++.|-+....+ .....+++|+.|+++.|++..... ...+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 34455555555544322211233455555555555554443221 122344555556665555442221 2345566
Q ss_pred cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC-chhhhccccCCceecc
Q 040607 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI-PESLSNCNLFGGLYLS 365 (629)
Q Consensus 287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 365 (629)
+.|.+++|.++..--.++...+|+|+.|++..|...........-+..|+.|||++|++.... -.....++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 666666666653333334444666666666666422222233334556666666666654221 1234456666666666
Q ss_pred ccccCCCc-ccc-----ccCCCCCccccCCCCcccCC-CCccccCCCcccEEEcccCcC
Q 040607 366 DNHLSGKI-PRW-----LGNLSVSEDVIMPNNHLEGP-IPMEFCQLNFLQILDISKKNI 417 (629)
Q Consensus 366 ~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 417 (629)
.+.+.++- |+. ...+++|+.|++..|++.+- .-..+..+++|+.|.+..|.+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 66665321 221 23456777777777776421 111233344555555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=6.2e-11 Score=108.86 Aligned_cols=131 Identities=25% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccc
Q 040607 382 VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461 (629)
Q Consensus 382 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 461 (629)
.|+++++++|.++ .+..+..-.|.++.|++++|.+...-. +.. +++|+.||||+|.++ ....+-..+-
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~--------L~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAE--------LPQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhh--------cccceEeecccchhH-hhhhhHhhhc
Confidence 4555566666555 334444555666666666666644332 222 667777777777666 4444444566
Q ss_pred ccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC-ccccCCCCCCEEEcccCcCcccCC
Q 040607 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP-PQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
++++|.|++|.|... ..++.+-+|..||+++|+|..... ..++.+|-|+.+.+.+|++.+...
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 777777777776542 346666777777777777763221 246667777777777777775444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.8e-10 Score=83.65 Aligned_cols=60 Identities=32% Similarity=0.564 Sum_probs=36.6
Q ss_pred CCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccccc
Q 040607 66 TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126 (629)
Q Consensus 66 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 126 (629)
++|++|++++|.++ .++++.|.++++|++|++++|.++.+++++|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34566666666665 5555556666666666666666666666666666666666666654
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=8.3e-11 Score=110.66 Aligned_cols=141 Identities=18% Similarity=0.081 Sum_probs=75.8
Q ss_pred hhcCCCCCCEEEccCCCCCCCCChh---HHhcCCCCcEEeccCccccccCCC-------------CcccCCCccEEEccC
Q 040607 208 FLYHQHDLKHVNLSHINLRGEFPNW---LSENNTKLQTLVQVNNYLSGIFQM-------------PKHARRHLTYLDVSD 271 (629)
Q Consensus 208 ~l~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~L~~ 271 (629)
.+..+++|++++||+|-+....+.. +...+..|++|.+.+|.+...... .....+.|+.+...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4456678999999998876554443 235577888888888876543211 123345566666666
Q ss_pred CCCccccc------CCCCCCccEEeccCCCCCcc---cchhhhhCCCCCcEEEccCcccccc----cCcccCCCCCCcEE
Q 040607 272 NFFQVHIP------VGNMKSLSVLDLSKNRLIGK---IPERLAMGCFSLRYLVLSNNKMKGH----IFSKKINLTNLWRL 338 (629)
Q Consensus 272 n~~~~~~~------~~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 338 (629)
|++..... |...+.|+.+.+++|.|... .....+..+++|+.||+.+|-++.. ....+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 65543322 44455666666666655421 1111122355555555555544321 12333444555555
Q ss_pred EccCCcCccc
Q 040607 339 QLDGNHFIGE 348 (629)
Q Consensus 339 ~l~~n~l~~~ 348 (629)
++++|.+...
T Consensus 247 ~l~dcll~~~ 256 (382)
T KOG1909|consen 247 NLGDCLLENE 256 (382)
T ss_pred cccccccccc
Confidence 5555555433
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.2e-10 Score=83.10 Aligned_cols=61 Identities=38% Similarity=0.543 Sum_probs=40.6
Q ss_pred cccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcC
Q 040607 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKL 521 (629)
Q Consensus 461 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 521 (629)
++|++|++++|+++.++++.|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666666666666666666666666666666666666666666666666654
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.5e-10 Score=118.36 Aligned_cols=246 Identities=24% Similarity=0.232 Sum_probs=143.8
Q ss_pred ccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcE
Q 040607 259 HARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337 (629)
Q Consensus 259 ~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 337 (629)
..+..++.+++..|.+..... +..+.+++.|++.+|.+. .+..... .+++|++|++++|.|+.+. .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchhh
Confidence 345566666677777665333 667777777888777776 3433222 2677777777777776543 3445566777
Q ss_pred EEccCCcCcccCchhhhccccCCceeccccccCCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416 (629)
Q Consensus 338 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 416 (629)
|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 77777777633 234456677777777777764333 1 355667777777777665322 22233344444666665
Q ss_pred CCCCCCCCcCCCccccCCCccC--CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcC
Q 040607 417 IFGSLPSCFNPFSIKQGKPLNS--MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494 (629)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 494 (629)
+....+... ... |+.+++++|.+. ..+..+..+..+..|++.+|++... ..+...+.+..+....
T Consensus 220 i~~~~~l~~----------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 220 ISKLEGLNE----------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND 286 (414)
T ss_pred ceeccCccc----------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence 543322211 222 667777777776 3334555667777777777776543 2344556666666666
Q ss_pred CcCCC---CCCcc-ccCCCCCCEEEcccCcCcccCC
Q 040607 495 NKLTG---KIPPQ-LVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 495 N~l~~---~~~~~-~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|.+.. ..... ....+.++...+.+|++....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccccccc
Confidence 66541 11111 3445667777777777665544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=5.6e-10 Score=115.75 Aligned_cols=265 Identities=23% Similarity=0.176 Sum_probs=179.9
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEecc
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLS 292 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~ 292 (629)
.++.++...+.+...... ...+..++.+.+..|.+.. ....+..+.+++.+++.+|.+..... +..+++|+.|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~--~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL--VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh--HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence 345555555433311111 1355667777788887776 22346677889999999999988888 8889999999999
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc-hhhhccccCCceeccccccCC
Q 040607 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNHLSG 371 (629)
Q Consensus 293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 371 (629)
+|.|+ .+.... .++.|+.|++++|.++.. ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus 127 ~N~I~-~i~~l~--~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 127 FNKIT-KLEGLS--TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccccc-cccchh--hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 99988 443322 266799999999998854 345568889999999998875544 2 5778889999999998863
Q ss_pred CccccccCCCCCccccCCCCcccCCCCccccCCC--cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607 372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN--FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449 (629)
Q Consensus 372 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 449 (629)
. .++..+..+..+++..|.+...-+ +..+. .|+.+++++|++.... ..+.. +..+..|++.+|.+
T Consensus 201 i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~--------~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 201 I--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLEN--------LKNLPVLDLSSNRI 267 (414)
T ss_pred c--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccc--------cccccccchhhccc
Confidence 2 334445556666888887764332 22223 3889999999885432 22222 67888899999888
Q ss_pred CCCCccccccccccceEeccCcccccc---ccc-cccCCCCCCEEECcCCcCCCCCC
Q 040607 450 TGEIPLRIGNLTRIHTLNVSHNKLTGL---ILS-TFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
... ..+...+.+..+....|.+... ... .....+.++...+.+|.+....+
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 632 2345567777788888876532 111 14567888899999998875544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=4e-09 Score=116.87 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=70.7
Q ss_pred cceeeccCcccCccchhhhcCCCCCCEEEccCCc--CCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSR--LNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
.+...+-+|.+.. ++.. ..++.|++|-+.+|. +. .++.+.|..++.|++|||++|.--+-.|..++++-+||+|+
T Consensus 525 ~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 525 VRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred eeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3444555555432 2222 233456666666664 33 55554566666677777766543334455666666667777
Q ss_pred cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCC
Q 040607 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENN 175 (629)
Q Consensus 122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 175 (629)
++++.++ .+|. .++++++|.+|++..+.....+ .+....+++|++|.+...
T Consensus 602 L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 7666666 6665 6666666667666665433222 234444666666666543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=2.1e-08 Score=111.26 Aligned_cols=277 Identities=19% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc--ccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccE
Q 040607 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY--LSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSV 288 (629)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~ 288 (629)
...+...+-+|++. .++.. ..++.|++|-+..|. +.......|..++.|+.||+++|.-.+..| ++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34455555555544 23322 234456666666654 444444445566666666666654433344 555666666
Q ss_pred EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC--cccCchhhhccccCCceeccc
Q 040607 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF--IGEIPESLSNCNLFGGLYLSD 366 (629)
Q Consensus 289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~ 366 (629)
|++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+..... +...-..+..+..|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 666666665 56666554 66666666666544333345555566666666654421 111222233334444443322
Q ss_pred cccCCCccccccCCCCCc----cccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCee
Q 040607 367 NHLSGKIPRWLGNLSVSE----DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442 (629)
Q Consensus 367 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 442 (629)
... ..-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+............... .++++..+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--~f~~l~~~ 752 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--CFPNLSKV 752 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh--hHHHHHHH
Confidence 211 0000111112222 2222222222 3344566677777777777766433222211100000 02233333
Q ss_pred ecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500 (629)
Q Consensus 443 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (629)
...++... ..+.+....++|+.|.+.++.....+......+..++++-+..+.+.+.
T Consensus 753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 33333322 2222333457777777777765555555555555555555555555533
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=3.9e-10 Score=115.56 Aligned_cols=163 Identities=23% Similarity=0.298 Sum_probs=105.8
Q ss_pred chhccCCCCCcEEEcCCCCceeecchhhhhcCc----------------------cchhc-----ccceeeccCcccCcc
Q 040607 5 LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGP----------------------WMVQC-----FIGFRAMDGTALDKN 57 (629)
Q Consensus 5 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------~~~~~-----~l~~L~l~~~~~~~~ 57 (629)
|..|..++.||+|.|.+|.++-. .++..+.. ..+.. -|.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 45677899999999999977432 22211100 00000 1224556666655 3
Q ss_pred chhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccC
Q 040607 58 FLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLK 137 (629)
Q Consensus 58 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~ 137 (629)
..+++.-++.|++|+|++|+++ ++. .+..+++|++|||++|.+..++--...++. |+.|++++|.++ ++- ++.
T Consensus 179 mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~--gie 251 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLR--GIE 251 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhh--hHH
Confidence 4556666777788888888776 443 577777788888888877766655555666 778888888776 443 577
Q ss_pred CCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcc
Q 040607 138 HLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177 (629)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 177 (629)
++++|+.||+++|-+.+......+..+..|+.|.+.+|++
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7778888888887776544444556667777777777766
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=4.6e-10 Score=115.05 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=53.4
Q ss_pred ccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEE
Q 040607 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS 515 (629)
Q Consensus 436 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 515 (629)
++.++.|+|+.|+++ ... .+..++.|++|||++|.+..++--...++. |..|.+++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 455555555555554 222 445555555555555555544333333333 55555555555422 1344555555555
Q ss_pred cccCcCcccCC-CccccccccCCCCCCCCCCCCC
Q 040607 516 VAHNKLSGKTP-DWVAQFATFNGSSYDGNPFLSS 548 (629)
Q Consensus 516 l~~N~l~~~~~-~~~~~~~~l~~l~~~~np~~c~ 548 (629)
+++|-+.+.-+ ..+..+..|..+.+.|||..|.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 65555543322 1123345555566666665553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.8e-09 Score=95.69 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=100.5
Q ss_pred CcEEEccCCcCccc-CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc-cCC-CCccccCCCcccEEE
Q 040607 335 LWRLQLDGNHFIGE-IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL-EGP-IPMEFCQLNFLQILD 411 (629)
Q Consensus 335 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~ 411 (629)
|+++|+++..++.. ....+..|.+|+.|.+.++++.+.+-..++.-.+|+.++++.+.- +.. ..-.+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555544321 122344555555555555555554444555555555555555432 111 111245566666666
Q ss_pred cccCcCCCCCCC-CcCCCccccCCCccCCCeeeccccc--CC-CCCccccccccccceEeccCc-cccccccccccCCCC
Q 040607 412 ISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNK--LT-GEIPLRIGNLTRIHTLNVSHN-KLTGLILSTFSNLKQ 486 (629)
Q Consensus 412 l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 486 (629)
++.|.++...-. .... .-++|+.|+++++. +. ..+..-...+++|..||||+| .++......|-+++.
T Consensus 267 lsWc~l~~~~Vtv~V~h-------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAH-------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred chHhhccchhhhHHHhh-------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 666654322211 1111 13567777777763 11 122223356889999999988 455444456678899
Q ss_pred CCEEECcCCcCCCCCCccc---cCCCCCCEEEcccCc
Q 040607 487 TESLDLSYNKLTGKIPPQL---VELNALAVFSVAHNK 520 (629)
Q Consensus 487 L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~ 520 (629)
|++|.++.|.. ++|+.+ ...|+|.+||+.++-
T Consensus 340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred heeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 99999999876 566654 446889999998753
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-08 Score=94.42 Aligned_cols=179 Identities=21% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEc
Q 040607 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNL 220 (629)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L 220 (629)
.|++|||++..++.......+..|.+|+.|.+.++.+... +...++.-.+|+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~------------------------I~~~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP------------------------IVNTIAKNSNLVRLNL 241 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH------------------------HHHHHhccccceeecc
Confidence 3566666655555322223445555666666655554322 2334445555566666
Q ss_pred cCC-CCCCCCChhHHhcCCCCcEEeccCccccccCC-CCc-ccCCCccEEEccCCCCc---cccc--CCCCCCccEEecc
Q 040607 221 SHI-NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ-MPK-HARRHLTYLDVSDNFFQ---VHIP--VGNMKSLSVLDLS 292 (629)
Q Consensus 221 ~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~-~~~~~L~~L~L~~n~~~---~~~~--~~~~~~L~~L~L~ 292 (629)
+.+ .++......++..++.|..|+++.|.+..... ... .--++|+.|++++..-. .... ...+++|..||++
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 554 33333333344555555555555554432110 011 11245666666654321 1111 4567777777777
Q ss_pred CCCCC-cccchhhhhCCCCCcEEEccCccc-ccccCcccCCCCCCcEEEccCCc
Q 040607 293 KNRLI-GKIPERLAMGCFSLRYLVLSNNKM-KGHIFSKKINLTNLWRLQLDGNH 344 (629)
Q Consensus 293 ~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 344 (629)
+|... ......++ .++.|++|.++.|.. .....-.+...|+|.+|++.++-
T Consensus 322 D~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 76432 22223333 367777777777742 11111234556777777777663
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.7e-07 Score=85.38 Aligned_cols=85 Identities=27% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCCCccEEeccCCCCCcccc--hhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc-cCchhhhcccc
Q 040607 282 NMKSLSVLDLSKNRLIGKIP--ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG-EIPESLSNCNL 358 (629)
Q Consensus 282 ~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 358 (629)
.++.++.+|+.+|.+.+ .. ..+...+|.|+.|+++.|.+...+...-....+|+.|-+.+..+.- .....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34566677777776652 11 2233456777777777776664332221345567777776665431 12234445666
Q ss_pred CCceecccc
Q 040607 359 FGGLYLSDN 367 (629)
Q Consensus 359 L~~L~l~~n 367 (629)
+++|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 666666666
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.5e-07 Score=85.50 Aligned_cols=85 Identities=27% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCCCCCEEEccCCcCCC--ccCccccCCCCCCcEEEccCCcCccCCCccc-CCCCCCCeeecccccCCcccCccccCCCC
Q 040607 64 SMTSLKLLSLSNSRLNG--TILDQGLCEFVHLQELHVDHNNLYGVPPWCL-GNMTSLQVLNISSNQLTGNISSPPLKHLK 140 (629)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~l~~l~ 140 (629)
.+++++.+||.+|.+++ +|.. .+.++|.|++|+++.|++..... .+ ....+|++|.|.+..+...-....+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 34556666666665541 1111 23455555555555555433221 12 23445555555555443222222344445
Q ss_pred CCCEEEccCc
Q 040607 141 SIQELKLSNN 150 (629)
Q Consensus 141 ~L~~L~L~~n 150 (629)
.++.|.++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 5555555554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.8e-07 Score=85.32 Aligned_cols=94 Identities=11% Similarity=0.159 Sum_probs=46.5
Q ss_pred ccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCc---ccCccch-------hhhcCCCCCCEEEccCCc
Q 040607 8 LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGT---ALDKNFL-------QVIKSMTSLKLLSLSNSR 77 (629)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~---~~~~~~~-------~~l~~l~~L~~L~Ls~n~ 77 (629)
+..+..+..+|||||.++..-..++++.- .-...|++.+++.- +....++ .++.+|++|+..+||+|-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~i--a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVI--ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHH--hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34456666777777766555555554431 11234444444421 1111222 234556666666666666
Q ss_pred CCCccCc---cccCCCCCCcEEEccCCcC
Q 040607 78 LNGTILD---QGLCEFVHLQELHVDHNNL 103 (629)
Q Consensus 78 l~~~i~~---~~~~~l~~L~~L~L~~n~i 103 (629)
+..+.|+ +.+++-..|.+|.+++|.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 5433332 1234455666666666654
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=3e-06 Score=74.31 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=87.9
Q ss_pred ceeeccCcccCccchhhhcC-CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607 45 GFRAMDGTALDKNFLQVIKS-MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123 (629)
Q Consensus 45 ~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 123 (629)
++++|.+.++.... .++. +.+...+||++|.+. .++ .|.+++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.
T Consensus 22 ~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccchh--hccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 46777777665321 1222 245677889988886 554 58888899999999999988888655567889999999
Q ss_pred cccCCccc-CccccCCCCCCCEEEccCcccccc--cCCcccCCCCCCcEEECCCCc
Q 040607 124 SNQLTGNI-SSPPLKHLKSIQELKLSNNYFQIP--ISLGPLYNHSNLKIFDSENNQ 176 (629)
Q Consensus 124 ~n~l~~~i-~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~ 176 (629)
+|.|. .+ .-+.+..+|+|++|.+-+|.++.. .....+..+|+|+.||..+-.
T Consensus 97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Ccchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 98776 32 222477788899998888887621 122355677888888887643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=9.5e-08 Score=77.94 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=40.4
Q ss_pred CCeeecccccCCCCCccccc-cccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607 439 MSGLDLSCNKLTGEIPLRIG-NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517 (629)
Q Consensus 439 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 517 (629)
|+..+|++|.+. ..|..|. ..+..+.|+|++|.|++++.+ +..++.|+.|+++.|++. ..|+.+..+.++-.||..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 344445555544 3333332 233555555555555543322 555555555555555555 445555555555555555
Q ss_pred cCcCc
Q 040607 518 HNKLS 522 (629)
Q Consensus 518 ~N~l~ 522 (629)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=3.7e-06 Score=55.59 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=13.6
Q ss_pred CCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCc
Q 040607 68 LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLY 104 (629)
Q Consensus 68 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~ 104 (629)
|++|++++|.++ ++++ .+.++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence 444444444443 3332 2444444444444444443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=6.9e-07 Score=73.02 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 359 (629)
+.....|...++++|.+. .+|..+...++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 334445556666666665 566665555556666666666666 34455666666666666666665 334455556666
Q ss_pred CceeccccccC
Q 040607 360 GGLYLSDNHLS 370 (629)
Q Consensus 360 ~~L~l~~n~l~ 370 (629)
-.|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66666666554
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=2.9e-06 Score=77.66 Aligned_cols=138 Identities=21% Similarity=0.142 Sum_probs=72.4
Q ss_pred hhcCCCCCCEEEccCCCCCCCCChhH---HhcCCCCcEEeccCccccccCCCC-------------cccCCCccEEEccC
Q 040607 208 FLYHQHDLKHVNLSHINLRGEFPNWL---SENNTKLQTLVQVNNYLSGIFQMP-------------KHARRHLTYLDVSD 271 (629)
Q Consensus 208 ~l~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~L~~ 271 (629)
.+..|++|+.++|++|.+....|+.+ .+..+.|.+|.+++|.+-.+.-.. ...-|.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 35577888888888888776666543 245567888888887654332111 12235566666666
Q ss_pred CCCccccc------CCCCCCccEEeccCCCCCcc-----cchhhhhCCCCCcEEEccCccccccc----CcccCCCCCCc
Q 040607 272 NFFQVHIP------VGNMKSLSVLDLSKNRLIGK-----IPERLAMGCFSLRYLVLSNNKMKGHI----FSKKINLTNLW 336 (629)
Q Consensus 272 n~~~~~~~------~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~ 336 (629)
|++..-.. +..-..|+++.+.+|.|... +....+ .+.+|+.||+.+|-++-.. ...++..+.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 65543222 22334566666666655421 011111 1455666666665544211 12233344455
Q ss_pred EEEccCCcCc
Q 040607 337 RLQLDGNHFI 346 (629)
Q Consensus 337 ~L~l~~n~l~ 346 (629)
.|.+..|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 5555555444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=8.1e-06 Score=71.62 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=82.5
Q ss_pred CCEEEccCCcCCCccCccccC-CCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEE
Q 040607 68 LKLLSLSNSRLNGTILDQGLC-EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146 (629)
Q Consensus 68 L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 146 (629)
=+.++|++.++. .+.. ++ -+.+...+||++|.+..+. .|..++.|.+|.+++|+|+ .|.+.--..+++|+.|.
T Consensus 21 e~e~~LR~lkip-~ien--lg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN--LGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccc-chhh--ccccccccceecccccchhhcc--cCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence 456777777664 3222 22 2346789999999987665 5889999999999999999 88774445568899999
Q ss_pred ccCcccccccCCcccCCCCCCcEEECCCCcceee
Q 040607 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180 (629)
Q Consensus 147 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 180 (629)
+.+|.+..-.....+..+|+|++|.+-+|++...
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 9999988555556788999999999999987543
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=2.1e-07 Score=90.09 Aligned_cols=281 Identities=16% Similarity=0.088 Sum_probs=122.9
Q ss_pred hhhcCCCCCCEEEccCC-CCCCCCChhHHhcCCCCcEEeccCc-cccccCCC-CcccCCCccEEEccCCCCccc---cc-
Q 040607 207 KFLYHQHDLKHVNLSHI-NLRGEFPNWLSENNTKLQTLVQVNN-YLSGIFQM-PKHARRHLTYLDVSDNFFQVH---IP- 279 (629)
Q Consensus 207 ~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~---~~- 279 (629)
.....++++++|++.++ ++++.....+...++.++++++..| .++...-. .-.++++|++++++.+.-... .+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 44456777788877776 3444444555566777777777663 23322111 223556666666665532211 11
Q ss_pred CCCCCCccEEeccCCCCC-cccchhhhhCCCCCcEEEccCcc-cccccC-cccCCCCCCcEEEccCCcC-cccCch-hhh
Q 040607 280 VGNMKSLSVLDLSKNRLI-GKIPERLAMGCFSLRYLVLSNNK-MKGHIF-SKKINLTNLWRLQLDGNHF-IGEIPE-SLS 354 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~ 354 (629)
+.++..++.+.+.+|.-. .+.-..+...+..+.++++..+. ++...- ..-..+..|+.|+.+++.- +...-. --.
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 334444555544444211 01111111223334444444432 221110 0012334455555554422 111111 112
Q ss_pred ccccCCceeccccccCC-CccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607 355 NCNLFGGLYLSDNHLSG-KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG 433 (629)
Q Consensus 355 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 433 (629)
++.+|+.+.+..++..+ .-...+ -.+++.|+.+++.++...... .+.. ..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l-----------------------~rn~~~Le~l~~e~~~~~~d~--tL~s----ls 368 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTML-----------------------GRNCPHLERLDLEECGLITDG--TLAS----LS 368 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhh-----------------------hcCChhhhhhcccccceehhh--hHhh----hc
Confidence 34445555554443211 000011 123345555555554331111 0000 01
Q ss_pred CCccCCCeeecccccCC-CC----CccccccccccceEeccCcccc-ccccccccCCCCCCEEECcCCcCC-C-CCCccc
Q 040607 434 KPLNSMSGLDLSCNKLT-GE----IPLRIGNLTRIHTLNVSHNKLT-GLILSTFSNLKQTESLDLSYNKLT-G-KIPPQL 505 (629)
Q Consensus 434 ~~~~~L~~L~L~~n~l~-~~----~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~-~~~~~~ 505 (629)
..++.|+.|.++.|... +. ....-.++..|+.+.|++++.. +...+.+...++|+.+++-+++-- . .+...-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 12566667777666532 11 0112234566777777777543 333445566777877777776432 1 122223
Q ss_pred cCCCCCCEEEc
Q 040607 506 VELNALAVFSV 516 (629)
Q Consensus 506 ~~l~~L~~L~l 516 (629)
.++|++++..+
T Consensus 449 ~~lp~i~v~a~ 459 (483)
T KOG4341|consen 449 THLPNIKVHAY 459 (483)
T ss_pred hhCccceehhh
Confidence 44666655443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=2.6e-06 Score=92.34 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=86.3
Q ss_pred cccceeeccCcc-cCccchhhhc-CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607 42 CFIGFRAMDGTA-LDKNFLQVIK-SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119 (629)
Q Consensus 42 ~~l~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 119 (629)
..|++||++|.. +....|..++ -+|.|++|.+++-.+..+=-.+.+.++++|..||+|+++++.+ ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 457788888765 3445566665 4688888888776653221112456778888888888887766 46778888888
Q ss_pred eecccccCCcccCccccCCCCCCCEEEccCccccccc--C---CcccCCCCCCcEEECCCCcceee
Q 040607 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPI--S---LGPLYNHSNLKIFDSENNQIYAQ 180 (629)
Q Consensus 120 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~~~~l~~L~~L~l~~n~~~~~ 180 (629)
|.+.+=.+...-.-..+-+|++|++||+|........ . .+--..+|+|+.||.|++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8777655542111124667788888888765433100 0 01223478888888888776543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.1e-05 Score=53.36 Aligned_cols=36 Identities=36% Similarity=0.571 Sum_probs=19.5
Q ss_pred ccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
+|++|++++|+|++++ ..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 4556666666665443 23556666666666666655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=7.2e-06 Score=88.99 Aligned_cols=131 Identities=20% Similarity=0.204 Sum_probs=89.2
Q ss_pred CCCCEEEccCCcCCCccCccc-cCCCCCCcEEEccCCcCccCC-CcccCCCCCCCeeecccccCCcccCccccCCCCCCC
Q 040607 66 TSLKLLSLSNSRLNGTILDQG-LCEFVHLQELHVDHNNLYGVP-PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ 143 (629)
Q Consensus 66 ~~L~~L~Ls~n~l~~~i~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~ 143 (629)
.+|++||+++......-.... -..+|+|+.|.+++-.+.... -....++|+|..||+|++.++ .+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 679999998865431222112 346889999999886653321 123567899999999999888 55 3789999999
Q ss_pred EEEccCcccccccCCcccCCCCCCcEEECCCCcceeecC-----CCCcCCcccccEEEecc
Q 040607 144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE-----SHSLTPKFQLNSIILSH 199 (629)
Q Consensus 144 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~L~~L~l~~ 199 (629)
+|.+.+=.+........+.++++|+.||+|..+...... .+....+++|+.|+.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999888777643444577889999999998875533220 01123356888888883
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=5.3e-05 Score=64.57 Aligned_cols=84 Identities=13% Similarity=0.325 Sum_probs=31.6
Q ss_pred hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607 61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140 (629)
Q Consensus 61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~ 140 (629)
+|.++++|+.+.+.. .+. .+...+|.++++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+. .++...|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 344444555555443 233 444444555544555554443 4444444444444455555433 222 33333444444
Q ss_pred CCCEEEccC
Q 040607 141 SIQELKLSN 149 (629)
Q Consensus 141 ~L~~L~L~~ 149 (629)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 454444433
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.74 E-value=7.7e-07 Score=86.35 Aligned_cols=111 Identities=20% Similarity=0.125 Sum_probs=47.1
Q ss_pred CCCCccEEeccCCC-CCcccchhhhhCCCCCcEEEccCcccccc--cCcccCCCCCCcEEEccCCcCcccC-----chhh
Q 040607 282 NMKSLSVLDLSKNR-LIGKIPERLAMGCFSLRYLVLSNNKMKGH--IFSKKINLTNLWRLQLDGNHFIGEI-----PESL 353 (629)
Q Consensus 282 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~ 353 (629)
..++|+.+.++.++ +++.-...+..+++.|+.+++..+..... ....-.+++.|+.+.+++|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 44555555555553 22111222333445555555555533211 1111124455566655555332111 1111
Q ss_pred hccccCCceeccccccCC-CccccccCCCCCccccCCCCc
Q 040607 354 SNCNLFGGLYLSDNHLSG-KIPRWLGNLSVSEDVIMPNNH 392 (629)
Q Consensus 354 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 392 (629)
.....++.+.+++++... .....+..+++|+.+++-+++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 233445555565555431 222334445566665555543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.71 E-value=8.8e-05 Score=63.21 Aligned_cols=117 Identities=23% Similarity=0.333 Sum_probs=68.6
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.++.+.+.. .+......+|..+++|+.+.+..+ +. .++..+|.++++++.+.+.+ .+..+....|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 455666653 455555667888989999999875 65 78888899998899999976 566677778899999999999
Q ss_pred ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCc
Q 040607 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168 (629)
Q Consensus 123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 168 (629)
..+ +. .++...|.++ +|+.+.+..+ +. .++...|.++++|+
T Consensus 89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--B-EEHTTTTTT--T--EEE-TTB--S-S----GGG------
T ss_pred Ccc-cc-EEchhhhcCC-CceEEEECCC-cc-EECCccccccccCC
Confidence 776 55 7777788887 9999998763 33 45556787777764
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00016 Score=72.34 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=46.0
Q ss_pred CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 359 (629)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.--...|..+ .++|++|++++|.....+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 344677888888888777 6662 14568888888754333444433 25678888887732223332 35
Q ss_pred Cceeccccc
Q 040607 360 GGLYLSDNH 368 (629)
Q Consensus 360 ~~L~l~~n~ 368 (629)
+.|+++.+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 666665544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00019 Score=71.90 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=86.6
Q ss_pred hhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccc
Q 040607 352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK 431 (629)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 431 (629)
.+..+.+++.|++++|.+. .+|. -.++|+.|.+++|.-...+|..+ .++|++|++++|.....+
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc----------
Confidence 3556789999999999877 4452 23479999999865544566544 358999999998432222
Q ss_pred cCCCccCCCeeecccccCCCCCccccccc-cccceEeccCcc-ccc-cccccccCCCCCCEEECcCCcCCCCCCccccCC
Q 040607 432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNL-TRIHTLNVSHNK-LTG-LILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL 508 (629)
Q Consensus 432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 508 (629)
.++|+.|+++.+... . +..+ ++|+.|.+.+++ ... ..+..+. ++|++|++++|... ..|+.+.
T Consensus 111 ----P~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 111 ----PESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred ----ccccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--
Confidence 346777777766543 1 1122 456777775432 111 0111111 67888888888766 4454444
Q ss_pred CCCCEEEcccC
Q 040607 509 NALAVFSVAHN 519 (629)
Q Consensus 509 ~~L~~L~l~~N 519 (629)
.+|+.|+++.|
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 47888888776
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=5.4e-05 Score=69.61 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=70.7
Q ss_pred chhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCC--cCccCCCcccCCCCCCCeeecccccCCc--ccCc
Q 040607 58 FLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHN--NLYGVPPWCLGNMTSLQVLNISSNQLTG--NISS 133 (629)
Q Consensus 58 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~i~~ 133 (629)
+......+..|+.|++.+..++ ++. .|..+++|++|.++.| ++..-.+-....+|+|++|++++|++.. +++
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~- 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR- 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-
Confidence 4444556667777777777776 443 4777888888888888 4433333234556888888888887752 222
Q ss_pred cccCCCCCCCEEEccCccccc--ccCCcccCCCCCCcEEECCC
Q 040607 134 PPLKHLKSIQELKLSNNYFQI--PISLGPLYNHSNLKIFDSEN 174 (629)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~ 174 (629)
.+..+.+|..|++.+|..+. ......|.-+++|++||-..
T Consensus 111 -pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 -PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred -hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 35566677788887776552 11123556677777776543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=6e-06 Score=75.90 Aligned_cols=102 Identities=25% Similarity=0.239 Sum_probs=73.9
Q ss_pred CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc-cccCCCCCC
Q 040607 64 SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS-PPLKHLKSI 142 (629)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L 142 (629)
.+.+.+.|+.-+|.++ +|. ....++.|++|.||-|+|+.+.| |..|++|++|+|..|.|. ++.+ .-+.++|+|
T Consensus 17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 3567778888888887 654 36678888999999888887765 788888999999888887 4432 136778888
Q ss_pred CEEEccCcccccccCC----cccCCCCCCcEEE
Q 040607 143 QELKLSNNYFQIPISL----GPLYNHSNLKIFD 171 (629)
Q Consensus 143 ~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~ 171 (629)
++|-|..|.-.+..+. ..+..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888776543321 3455677777766
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00037 Score=64.26 Aligned_cols=91 Identities=26% Similarity=0.302 Sum_probs=68.5
Q ss_pred ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc--cCCcccCccccCCCCCCCEEEccCcccccccCCcccCC
Q 040607 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN--QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYN 163 (629)
Q Consensus 86 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 163 (629)
....+..|+.|++.+..++.+. .|-.+++|+.|.++.| ++++.++. ....+++|++|++++|++........+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence 3445667888888888776554 5788999999999999 66555554 45666999999999999874444456777
Q ss_pred CCCCcEEECCCCccee
Q 040607 164 HSNLKIFDSENNQIYA 179 (629)
Q Consensus 164 l~~L~~L~l~~n~~~~ 179 (629)
+++|..|++..|..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 8888888888876543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00014 Score=67.11 Aligned_cols=99 Identities=25% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccch-hhhhCCCCCcEEEc
Q 040607 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPE-RLAMGCFSLRYLVL 316 (629)
Q Consensus 238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L 316 (629)
.+.++|+..+|.++++. ....++.|+.|.|+-|+++...++..|++|++|+|..|.|. .+.+ ....++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 34455556666555432 22356667777777777777777778888888888888776 3332 23345677777777
Q ss_pred cCcccccccCc-----ccCCCCCCcEEE
Q 040607 317 SNNKMKGHIFS-----KKINLTNLWRLQ 339 (629)
Q Consensus 317 ~~n~l~~~~~~-----~~~~l~~L~~L~ 339 (629)
..|.-.+..+. .+..+|+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77765544332 234567777664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.00079 Score=71.98 Aligned_cols=62 Identities=29% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCCccEEeccCCC-CCcccchhhhhCCCCCcEEEccCcc-cccccCcc-cCCCCCCcEEEccCCc
Q 040607 283 MKSLSVLDLSKNR-LIGKIPERLAMGCFSLRYLVLSNNK-MKGHIFSK-KINLTNLWRLQLDGNH 344 (629)
Q Consensus 283 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~ 344 (629)
+.+|+.|+++++. +++..-..+...+++|++|.+.++. ++...-.. ...++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3555555555554 3333333333335555555555444 33222111 1234555555555553
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.71 E-value=0.00076 Score=72.07 Aligned_cols=113 Identities=23% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCCCCCEEEccCCcCCCccC-ccccCCCCCCcEEEccCC-cCccCCC----cccCCCCCCCeeeccccc-CCcccCcccc
Q 040607 64 SMTSLKLLSLSNSRLNGTIL-DQGLCEFVHLQELHVDHN-NLYGVPP----WCLGNMTSLQVLNISSNQ-LTGNISSPPL 136 (629)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~n-~i~~~~~----~~~~~l~~L~~L~L~~n~-l~~~i~~~~l 136 (629)
.+++|+.|.+..+.-..... ......+++|+.|+++++ ......+ .....+++|+.|+++.+. ++ ...-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHH
Confidence 36777777777664321211 113556677777777762 1111111 123446777777777776 44 2211122
Q ss_pred -CCCCCCCEEEccCcc-cccccCCcccCCCCCCcEEECCCCcc
Q 040607 137 -KHLKSIQELKLSNNY-FQIPISLGPLYNHSNLKIFDSENNQI 177 (629)
Q Consensus 137 -~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~ 177 (629)
..+++|++|.+.++. ++...-......++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 226777777766665 44222222334566677777776654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.95 E-value=0.0093 Score=32.57 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=6.9
Q ss_pred CCEEEccCCcCCCccCc
Q 040607 68 LKLLSLSNSRLNGTILD 84 (629)
Q Consensus 68 L~~L~Ls~n~l~~~i~~ 84 (629)
|++|||++|.++ .+|+
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 344444444444 4443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.018 Score=31.47 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=6.1
Q ss_pred cceEeccCcccc
Q 040607 463 IHTLNVSHNKLT 474 (629)
Q Consensus 463 L~~L~Ls~n~l~ 474 (629)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.70 E-value=0.0012 Score=68.80 Aligned_cols=171 Identities=21% Similarity=0.211 Sum_probs=98.3
Q ss_pred hccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCcc----chhhhcCCCCCCEEEccCCcCCCc-
Q 040607 7 ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKN----FLQVIKSMTSLKLLSLSNSRLNGT- 81 (629)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~- 81 (629)
.+.....|..|++++|.+++.-...+.+. .....+.+++|++..|.+++. +.+.+....+++.++++.|.+...
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~-l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEG-LRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhh-cccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 45667777788888888776655555442 112235667777777777654 445566677788888888776310
Q ss_pred --cCcccc----CCCCCCcEEEccCCcCccCCC----cccCCCCC-CCeeecccccCCcc----cCccccCCC-CCCCEE
Q 040607 82 --ILDQGL----CEFVHLQELHVDHNNLYGVPP----WCLGNMTS-LQVLNISSNQLTGN----ISSPPLKHL-KSIQEL 145 (629)
Q Consensus 82 --i~~~~~----~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~-L~~L~L~~n~l~~~----i~~~~l~~l-~~L~~L 145 (629)
....++ ....++++|.+++|.++...- ..+...+. ++.|++..|.+.+. +.+ .+..+ ..++++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l 267 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVL 267 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHH-Hhcccchhhhhh
Confidence 111122 245677778887776652211 13344455 66677777766522 111 34444 566777
Q ss_pred EccCccccccc---CCcccCCCCCCcEEECCCCccee
Q 040607 146 KLSNNYFQIPI---SLGPLYNHSNLKIFDSENNQIYA 179 (629)
Q Consensus 146 ~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~~~~ 179 (629)
+++.|.++... -......++.++++.++.|.+..
T Consensus 268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 77777765211 11234455667777777766643
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.57 E-value=0.001 Score=69.33 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=17.9
Q ss_pred ccEEEccCCCCccccc------CCCCCCccEEeccCCCCC
Q 040607 264 LTYLDVSDNFFQVHIP------VGNMKSLSVLDLSKNRLI 297 (629)
Q Consensus 264 L~~L~L~~n~~~~~~~------~~~~~~L~~L~L~~n~l~ 297 (629)
+..+.+.+|.+..... +...++|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 4445555555443222 445566666666666655
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.056 Score=27.30 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=4.9
Q ss_pred CCCEEEccCCcCC
Q 040607 67 SLKLLSLSNSRLN 79 (629)
Q Consensus 67 ~L~~L~Ls~n~l~ 79 (629)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.01 E-value=0.082 Score=30.16 Aligned_cols=20 Identities=35% Similarity=0.678 Sum_probs=9.0
Q ss_pred CCcEEEccCCcCccCCCccc
Q 040607 92 HLQELHVDHNNLYGVPPWCL 111 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~ 111 (629)
+|++|+|++|++..++++.|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44444444444444444333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.01 E-value=0.082 Score=30.16 Aligned_cols=20 Identities=35% Similarity=0.678 Sum_probs=9.0
Q ss_pred CCcEEEccCCcCccCCCccc
Q 040607 92 HLQELHVDHNNLYGVPPWCL 111 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~ 111 (629)
+|++|+|++|++..++++.|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44444444444444444333
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.95 E-value=0.081 Score=30.20 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=8.5
Q ss_pred CCCCeeecccccCCcccCc
Q 040607 115 TSLQVLNISSNQLTGNISS 133 (629)
Q Consensus 115 ~~L~~L~L~~n~l~~~i~~ 133 (629)
++|++|+|++|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34445555555444 4444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.95 E-value=0.081 Score=30.20 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=8.5
Q ss_pred CCCCeeecccccCCcccCc
Q 040607 115 TSLQVLNISSNQLTGNISS 133 (629)
Q Consensus 115 ~~L~~L~L~~n~l~~~i~~ 133 (629)
++|++|+|++|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34445555555444 4444
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.53 E-value=0.078 Score=26.76 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=3.1
Q ss_pred CCeeeccccc
Q 040607 117 LQVLNISSNQ 126 (629)
Q Consensus 117 L~~L~L~~n~ 126 (629)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.64 E-value=0.0077 Score=54.50 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=66.1
Q ss_pred ccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEE
Q 040607 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS 515 (629)
Q Consensus 436 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 515 (629)
....+.||++.|.+. .....|+-+..+..|+++.|.+.. .|..+.++..+..+++.+|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 566777888888776 444566777888888888888864 4666788888888888888887 6788888888888888
Q ss_pred cccCcCc
Q 040607 516 VAHNKLS 522 (629)
Q Consensus 516 l~~N~l~ 522 (629)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888864
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=0.043 Score=48.90 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=45.0
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCcccc-CCCCCCcEEEccCC-cCccCCCcccCCCCCCCee
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHN-NLYGVPPWCLGNMTSLQVL 120 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 120 (629)
.++.+|=+++.|..+..+-+.+++.++.|.+.+|.-.++---+.+ .-.++|+.|++++| +|++-.-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355677777777766666677777777777766643211000001 12346666666655 3444443445556666666
Q ss_pred eccc
Q 040607 121 NISS 124 (629)
Q Consensus 121 ~L~~ 124 (629)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.85 E-value=0.12 Score=28.78 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=11.1
Q ss_pred CCCcEEEcCCCCceeecchhh
Q 040607 12 TNLENLTLDNSFFHVSLLQSI 32 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~ 32 (629)
++|++|++++|.+++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566667777666655544433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.55 E-value=0.0091 Score=54.07 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=55.1
Q ss_pred hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607 61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140 (629)
Q Consensus 61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~ 140 (629)
.+......+.||++.|.+. ..-. .|+-+..|..|+++.|.+... |..+.....++.+++..|..+ ..|. .++..+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence 3455566677777777664 3332 466666666777777766543 345666666666777666666 6665 667777
Q ss_pred CCCEEEccCcccc
Q 040607 141 SIQELKLSNNYFQ 153 (629)
Q Consensus 141 ~L~~L~L~~n~l~ 153 (629)
.++++++.++.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777777666654
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.97 E-value=0.24 Score=61.01 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=36.2
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-Cccccc
Q 040607 491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQF 532 (629)
Q Consensus 491 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~ 532 (629)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|. .||..+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~W 43 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRW 43 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHH
Confidence 689999998888899999999999999999999988 444444
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=0.062 Score=47.89 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCC-CCCCCEEEccCcc-cccccCCcccCCCCCCcE
Q 040607 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH-LKSIQELKLSNNY-FQIPISLGPLYNHSNLKI 169 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 169 (629)
.++.++.++..|....-+-+.+++.++.|.+.+|.--+...-+.+++ .++|+.|++++|. || +.....+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHH
Confidence 46777778777776666667777777777777764322222112222 3678888888774 33 333344556666666
Q ss_pred EECCC
Q 040607 170 FDSEN 174 (629)
Q Consensus 170 L~l~~ 174 (629)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.13 E-value=4.4 Score=41.33 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=30.7
Q ss_pred CCCeeecccccCCcccCccccCC---CCCCCEEEccCcccccccC--CcccCCCCCCcEEECCCCcc
Q 040607 116 SLQVLNISSNQLTGNISSPPLKH---LKSIQELKLSNNYFQIPIS--LGPLYNHSNLKIFDSENNQI 177 (629)
Q Consensus 116 ~L~~L~L~~n~l~~~i~~~~l~~---l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~~ 177 (629)
.+.+++++.|...+.+|. .+.. -..++.++.+...+..... ...+..-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 466677777666555553 2211 1346666666655442111 12233445666666666544
No 88
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=78.95 E-value=1.6 Score=36.97 Aligned_cols=47 Identities=13% Similarity=-0.001 Sum_probs=30.4
Q ss_pred ceeeeehhhhhHHHHHHHhhhhhccccccchhhHhHHHhhheeeeeh
Q 040607 561 NNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFA 607 (629)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (629)
.++.+++++++.+++++++++++|++++++.-|.--+.-...+|...
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n 96 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSN 96 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCc
Confidence 44555555555566665666666777777777776677767777664
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.32 E-value=1.5 Score=54.37 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=30.2
Q ss_pred eccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 467 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999999999999999999999999887
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.65 E-value=2.5 Score=24.10 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=4.5
Q ss_pred CcEEEccCCcC
Q 040607 93 LQELHVDHNNL 103 (629)
Q Consensus 93 L~~L~L~~n~i 103 (629)
|+.|++++|+|
T Consensus 4 L~~L~L~~NkI 14 (26)
T smart00365 4 LEELDLSQNKI 14 (26)
T ss_pred cCEEECCCCcc
Confidence 34444444433
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.47 E-value=2.5 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=11.3
Q ss_pred CCCcEEEcCCCCceeec
Q 040607 12 TNLENLTLDNSFFHVSL 28 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~ 28 (629)
++|++|||++|.+++.-
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 46777777777765544
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.79 E-value=3.7 Score=23.33 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=7.4
Q ss_pred CCCEEECcCCcCC
Q 040607 486 QTESLDLSYNKLT 498 (629)
Q Consensus 486 ~L~~L~L~~N~l~ 498 (629)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555655555
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=67.93 E-value=4.9 Score=33.95 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=11.0
Q ss_pred hhhHHHHHHHhhhhhccccccch
Q 040607 569 VSYVIVILGIDGVLYVNPYSGRR 591 (629)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~ 591 (629)
++++++++++++++++++|||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 44444444444455555555443
No 94
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=66.85 E-value=2.7 Score=34.21 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhccccccchhhH
Q 040607 573 IVILGIDGVLYVNPYSGRRWFY 594 (629)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~ 594 (629)
+++.++.+++++++.++++-|.
T Consensus 90 lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhhhhccccCC
Confidence 3333444555555555544443
No 95
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.84 E-value=4.7 Score=34.03 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=8.9
Q ss_pred ehhhhhHHHHHHHhhhhhccccc
Q 040607 566 IFAVSYVIVILGIDGVLYVNPYS 588 (629)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~ 588 (629)
++++.++++++++++++++.+++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333333333
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.47 E-value=70 Score=33.13 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=26.3
Q ss_pred cceeeccCcccCccchhhhcCC---CCCCEEEccCCcCCCcc--CccccCCCCCCcEEEccCCc
Q 040607 44 IGFRAMDGTALDKNFLQVIKSM---TSLKLLSLSNSRLNGTI--LDQGLCEFVHLQELHVDHNN 102 (629)
Q Consensus 44 l~~L~l~~~~~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~i--~~~~~~~l~~L~~L~L~~n~ 102 (629)
+.+++++.|.....+|..+..+ .-+++++.+...+.-+. .+..+..-.+++..+++.|.
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 4456666665555555433222 23555555554442111 11122333455555555553
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.51 E-value=4.9 Score=41.95 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.1
Q ss_pred CCCEEEcccCcCcc
Q 040607 510 ALAVFSVAHNKLSG 523 (629)
Q Consensus 510 ~L~~L~l~~N~l~~ 523 (629)
.|++|-+.||++..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 34555555555543
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.07 E-value=7.8 Score=21.86 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=11.3
Q ss_pred CCCcEEEcCCCC-ceeec
Q 040607 12 TNLENLTLDNSF-FHVSL 28 (629)
Q Consensus 12 ~~L~~L~l~~~~-~~~~~ 28 (629)
++|++|++++|. +++..
T Consensus 2 ~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 2 PNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCEeCCCCCCCcCHHH
Confidence 577788888874 55443
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.59 E-value=14 Score=38.75 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=14.3
Q ss_pred CCccEEEccCCCCccccc----CCCCCCccEEeccCC
Q 040607 262 RHLTYLDVSDNFFQVHIP----VGNMKSLSVLDLSKN 294 (629)
Q Consensus 262 ~~L~~L~L~~n~~~~~~~----~~~~~~L~~L~L~~n 294 (629)
+.+..++|++|++..... ....|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444444455554443222 123344555555544
No 100
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=33.07 E-value=27 Score=31.69 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=12.9
Q ss_pred ccceeeeehhhhhHHHHHHHhhhhhcc
Q 040607 559 DMNNFYIIFAVSYVIVILGIDGVLYVN 585 (629)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (629)
++..+++.++.++++++++++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHH
Confidence 344445555555554444444444444
No 101
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=30.88 E-value=53 Score=29.89 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=14.2
Q ss_pred CCCCCCCcccccceeeeehhhhhHHHHHHHhhhhhcc
Q 040607 549 SCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVN 585 (629)
Q Consensus 549 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (629)
.|........ +..+++++.++.+++++++++..||+
T Consensus 89 ~~~~~~~~~r-~~~lI~lv~~g~~lLla~~~~~~Y~~ 124 (202)
T PF06365_consen 89 SCSHQSSSDR-YPTLIALVTSGSFLLLAILLGAGYCC 124 (202)
T ss_pred ccCCCCcCcc-ceEEEehHHhhHHHHHHHHHHHHHHh
Confidence 4554443333 33333333333233444444443333
No 102
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.22 E-value=42 Score=32.83 Aligned_cols=6 Identities=0% Similarity=-0.324 Sum_probs=2.5
Q ss_pred HHHHHh
Q 040607 614 LIVIIR 619 (629)
Q Consensus 614 ~~~~~~ 619 (629)
+||||+
T Consensus 281 YRRKKK 286 (299)
T PF02009_consen 281 YRRKKK 286 (299)
T ss_pred HHHHhh
Confidence 444433
No 103
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.63 E-value=57 Score=26.37 Aligned_cols=9 Identities=0% Similarity=-0.463 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 040607 610 NLATLIVII 618 (629)
Q Consensus 610 ~~~~~~~~~ 618 (629)
.|+..||.|
T Consensus 49 ~~~~~rr~~ 57 (108)
T PF07219_consen 49 RWRRRRRRR 57 (108)
T ss_pred HHHHHHHHH
Confidence 344433333
No 104
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=25.06 E-value=46 Score=26.42 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 040607 540 YDGNPFLSS 548 (629)
Q Consensus 540 ~~~np~~c~ 548 (629)
-+||...|-
T Consensus 32 ~sg~~~~c~ 40 (150)
T PF06084_consen 32 NSGNHSKCH 40 (150)
T ss_pred cCCCCcchh
Confidence 356655553
No 105
>PF15050 SCIMP: SCIMP protein
Probab=23.98 E-value=16 Score=29.40 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=8.2
Q ss_pred eeehhhhhHHHHHHHhhhhh
Q 040607 564 YIIFAVSYVIVILGIDGVLY 583 (629)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~ 583 (629)
+++++++++++.+++..++|
T Consensus 9 WiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333
No 106
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=22.00 E-value=43 Score=22.34 Aligned_cols=8 Identities=50% Similarity=1.423 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 040607 543 NPFLSSSCN 551 (629)
Q Consensus 543 np~~c~~C~ 551 (629)
|||.| +|.
T Consensus 1 NP~~C-dC~ 8 (51)
T smart00082 1 NPFIC-DCE 8 (51)
T ss_pred CCccC-cCC
Confidence 89999 886
Done!