Query 040607
Match_columns 629
No_of_seqs 408 out of 4387
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.5E-63 2.2E-67 553.4 42.7 540 6-558 94-756 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.5E-60 8.7E-65 532.4 37.1 530 1-546 39-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-57 1.2E-61 502.8 44.8 520 12-551 25-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 4E-56 1.4E-60 487.7 40.8 515 13-551 34-564 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-56 2E-60 502.2 37.2 486 42-551 24-564 (844)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-54 3.9E-59 476.2 38.1 488 42-551 32-562 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-53 3.9E-58 474.5 45.4 518 6-534 43-636 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-53 5E-58 467.4 35.8 486 12-526 32-562 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.2E-53 1.8E-57 463.0 38.0 499 5-526 50-564 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-53 2.2E-57 477.3 35.6 483 11-526 23-564 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 5.4E-49 1.8E-53 428.3 35.4 489 12-527 28-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-48 4.1E-53 425.5 32.0 481 15-551 10-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-48 4.3E-53 423.2 31.2 482 15-526 8-514 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-47 6.1E-52 422.1 35.7 493 40-551 50-584 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-47 8.3E-52 413.1 29.5 463 12-502 26-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-47 2.2E-51 406.7 25.1 438 43-551 22-485 (520)
17 4eco_A Uncharacterized protein 100.0 5.8E-47 2E-51 414.5 19.2 368 101-529 193-607 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-46 6.6E-51 403.0 19.2 438 12-526 21-485 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-44 4.9E-49 398.8 34.6 489 12-526 52-584 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 1.3E-44 4.5E-49 401.8 28.2 447 12-523 323-865 (876)
21 4eco_A Uncharacterized protein 100.0 1E-45 3.5E-50 404.6 15.5 474 43-547 82-601 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-44 1E-48 389.0 25.3 454 45-551 34-514 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.1E-43 3.8E-48 394.3 27.2 462 42-547 323-865 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-44 3.6E-49 392.6 18.0 462 11-526 30-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.3E-39 4.5E-44 343.9 32.7 384 46-527 14-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 7.2E-39 2.5E-43 338.2 28.3 381 118-551 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.8E-38 6E-43 332.2 24.5 268 11-346 10-290 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-37 4.4E-42 325.6 26.8 402 42-547 11-430 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.8E-37 1.3E-41 326.8 24.5 342 193-547 14-357 (477)
30 1o6v_A Internalin A; bacterial 100.0 4.8E-36 1.7E-40 316.8 30.1 345 64-498 44-388 (466)
31 1o6v_A Internalin A; bacterial 100.0 2.3E-35 8E-40 311.5 32.5 343 43-419 47-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1E-35 3.5E-40 311.5 28.0 363 54-527 30-392 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 5.2E-36 1.8E-40 318.0 24.7 323 215-551 13-337 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1E-34 3.6E-39 303.9 30.3 355 42-507 42-396 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.8E-33 9.7E-38 288.8 24.2 328 190-547 45-375 (390)
36 4fmz_A Internalin; leucine ric 100.0 2E-32 7E-37 277.9 26.8 304 211-545 42-345 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 4.6E-32 1.6E-36 279.8 29.5 308 11-346 44-352 (390)
38 4fmz_A Internalin; leucine ric 100.0 3.9E-32 1.3E-36 275.8 28.4 307 161-522 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 6.7E-33 2.3E-37 301.6 23.0 330 189-548 50-382 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-33 1.2E-37 278.3 16.0 253 284-548 50-306 (313)
41 3oja_B Anopheles plasmodium-re 100.0 3.2E-31 1.1E-35 288.3 29.6 309 11-370 50-358 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-31 1.2E-35 266.8 24.3 285 214-519 34-330 (332)
43 1xku_A Decorin; proteoglycan, 100.0 7.8E-31 2.7E-35 264.0 24.4 286 214-519 32-329 (330)
44 1xku_A Decorin; proteoglycan, 100.0 4.8E-30 1.6E-34 258.3 26.8 289 42-367 31-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1E-29 3.4E-34 256.1 27.8 286 239-544 34-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-31 7.8E-36 265.1 12.9 253 262-526 50-308 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-33 1.2E-37 295.2 -2.5 384 140-546 3-440 (461)
48 3zyj_A Leucine-rich repeat-con 100.0 1.4E-29 4.8E-34 265.2 22.4 251 264-526 45-296 (440)
49 3zyi_A Leucine-rich repeat-con 100.0 1.9E-29 6.6E-34 265.1 22.0 251 264-526 56-307 (452)
50 1z7x_W Ribonuclease inhibitor; 100.0 8.8E-32 3E-36 284.5 1.4 381 11-418 2-440 (461)
51 2z66_A Variable lymphocyte rec 100.0 3E-29 1E-33 249.6 18.2 251 265-526 10-265 (306)
52 2z66_A Variable lymphocyte rec 100.0 2.9E-29 9.9E-34 249.8 16.0 251 287-551 10-265 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 4.2E-29 1.5E-33 253.8 15.2 278 237-526 30-318 (353)
54 1ozn_A Reticulon 4 receptor; N 100.0 2.6E-28 8.7E-33 240.2 18.2 248 287-547 14-262 (285)
55 3ogk_B Coronatine-insensitive 100.0 1.6E-30 5.3E-35 284.0 0.3 433 57-519 64-548 (592)
56 3zyj_A Leucine-rich repeat-con 100.0 1.6E-27 5.5E-32 249.6 22.9 251 286-551 45-296 (440)
57 3zyi_A Leucine-rich repeat-con 100.0 2.6E-27 9E-32 248.9 24.0 251 286-551 56-307 (452)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5E-32 234.8 17.5 267 265-542 14-283 (285)
59 3ogk_B Coronatine-insensitive 100.0 3.1E-30 1.1E-34 281.6 -2.0 438 8-471 69-548 (592)
60 2z80_A TOLL-like receptor 2, v 99.9 2.8E-28 9.7E-33 247.7 12.0 280 213-502 31-318 (353)
61 4fcg_A Uncharacterized protein 99.9 5.9E-27 2E-31 234.6 18.7 225 283-521 80-313 (328)
62 4fcg_A Uncharacterized protein 99.9 7.2E-27 2.5E-31 234.0 17.1 225 308-545 80-313 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2E-25 6.8E-30 240.2 25.2 268 214-533 41-308 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-27 1.1E-31 235.9 8.0 256 264-541 12-270 (317)
65 3oja_A Leucine-rich immune mol 99.9 8.1E-27 2.8E-31 246.3 11.4 247 281-551 31-286 (487)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.9E-29 234.4 27.2 263 44-377 42-304 (622)
67 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.3E-30 218.6 19.2 226 289-527 12-242 (276)
68 2o6q_A Variable lymphocyte rec 99.9 4E-25 1.4E-29 215.2 20.8 207 309-526 16-222 (270)
69 1wwl_A Monocyte differentiatio 99.9 7.2E-27 2.5E-31 232.7 8.4 210 8-251 39-266 (312)
70 2z62_A TOLL-like receptor 4, v 99.9 1.7E-25 5.9E-30 218.8 17.7 226 313-551 11-241 (276)
71 2p1m_B Transport inhibitor res 99.9 7.3E-29 2.5E-33 270.9 -7.2 116 60-176 60-195 (594)
72 1wwl_A Monocyte differentiatio 99.9 1.6E-27 5.5E-32 237.4 2.4 247 260-522 41-309 (312)
73 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-26 6.4E-31 230.2 9.2 240 285-547 11-251 (317)
74 2o6q_A Variable lymphocyte rec 99.9 3.3E-24 1.1E-28 208.8 22.1 206 334-551 17-222 (270)
75 2p1m_B Transport inhibitor res 99.9 6.8E-28 2.3E-32 263.2 -5.1 435 8-472 62-542 (594)
76 1p9a_G Platelet glycoprotein I 99.9 9.7E-25 3.3E-29 214.3 17.6 205 307-526 8-212 (290)
77 3oja_A Leucine-rich immune mol 99.9 6.6E-26 2.2E-30 239.4 7.5 244 239-527 35-287 (487)
78 1p9a_G Platelet glycoprotein I 99.9 1.5E-23 5.2E-28 205.8 19.3 207 329-551 6-212 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.3E-28 204.8 14.1 206 308-532 40-245 (272)
80 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 7.9E-28 202.9 12.7 210 280-509 37-246 (272)
81 3m19_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 193.8 18.3 181 334-525 15-195 (251)
82 2xwt_C Thyrotropin receptor; s 99.9 8.8E-23 3E-27 194.9 13.1 197 309-519 31-236 (239)
83 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.6E-26 188.8 18.5 177 311-498 16-192 (251)
84 4glp_A Monocyte differentiatio 99.9 2E-22 6.8E-27 200.4 12.3 223 285-545 65-306 (310)
85 4glp_A Monocyte differentiatio 99.9 3.4E-22 1.2E-26 198.7 12.5 179 357-546 91-285 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 4.2E-22 1.4E-26 190.2 11.7 198 333-544 31-237 (239)
87 3goz_A Leucine-rich repeat-con 99.9 6.2E-23 2.1E-27 208.8 5.6 253 268-524 4-299 (362)
88 1h6u_A Internalin H; cell adhe 99.9 6.4E-21 2.2E-25 189.0 18.2 203 272-523 29-231 (308)
89 3goz_A Leucine-rich repeat-con 99.9 1.1E-22 3.8E-27 206.9 4.8 255 288-547 2-298 (362)
90 1h6u_A Internalin H; cell adhe 99.9 4.3E-21 1.5E-25 190.2 16.0 195 257-498 36-230 (308)
91 2ast_B S-phase kinase-associat 99.9 5.4E-23 1.9E-27 207.4 1.5 233 284-530 70-314 (336)
92 4ay9_X Follicle-stimulating ho 99.8 4.9E-21 1.7E-25 193.7 14.3 242 265-521 12-258 (350)
93 2ast_B S-phase kinase-associat 99.8 1.4E-22 4.8E-27 204.4 2.6 254 214-507 48-315 (336)
94 2ca6_A RAN GTPase-activating p 99.8 9.9E-23 3.4E-27 209.5 1.5 242 257-526 27-320 (386)
95 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.4E-25 190.6 15.8 121 46-172 13-135 (350)
96 2ca6_A RAN GTPase-activating p 99.8 5.8E-23 2E-27 211.2 -1.6 232 308-547 31-317 (386)
97 2v9t_B SLIT homolog 2 protein 99.8 2.8E-20 9.6E-25 174.6 13.0 156 360-526 14-169 (220)
98 2xot_A Amphoterin-induced prot 99.8 1.8E-20 6.2E-25 190.3 11.0 157 383-547 41-203 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.8E-24 170.5 13.0 156 360-526 14-170 (220)
100 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6E-24 168.0 14.0 161 358-533 29-189 (208)
101 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.1E-24 192.1 14.6 187 310-532 60-253 (571)
102 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 166.4 14.7 108 310-417 29-136 (208)
103 3e6j_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 168.2 15.2 156 359-526 21-176 (229)
104 2v9t_B SLIT homolog 2 protein 99.8 3.7E-19 1.3E-23 166.9 14.2 156 384-551 14-169 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-19 1.5E-23 166.4 14.1 156 384-551 14-170 (220)
106 2xot_A Amphoterin-induced prot 99.8 3.4E-19 1.2E-23 180.9 10.0 160 359-526 41-206 (361)
107 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 9.8E-23 168.3 15.8 171 308-524 45-215 (291)
108 3e6j_A Variable lymphocyte rec 99.8 5.1E-18 1.7E-22 160.3 15.8 156 383-551 21-176 (229)
109 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.5E-23 169.1 12.4 138 270-418 32-169 (291)
110 3cvr_A Invasion plasmid antige 99.8 9.2E-18 3.2E-22 178.3 17.0 193 263-483 60-252 (571)
111 3sb4_A Hypothetical leucine ri 99.7 1.7E-18 5.8E-23 173.5 9.5 283 43-340 26-328 (329)
112 3sb4_A Hypothetical leucine ri 99.7 4.7E-18 1.6E-22 170.3 12.6 258 90-363 48-327 (329)
113 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.9E-22 179.8 16.2 189 285-498 22-210 (605)
114 2wfh_A SLIT homolog 2 protein 99.7 1.6E-17 5.5E-22 152.1 12.6 131 408-551 13-143 (193)
115 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.2E-22 178.8 13.5 164 243-419 26-189 (605)
116 1w8a_A SLIT protein; signaling 99.7 2.9E-17 1E-21 150.4 12.3 132 384-526 11-143 (192)
117 1w8a_A SLIT protein; signaling 99.7 2.7E-17 9.4E-22 150.6 10.9 172 360-547 11-184 (192)
118 4ezg_A Putative uncharacterize 99.7 3.2E-17 1.1E-21 151.0 11.4 153 355-523 42-195 (197)
119 4fs7_A Uncharacterized protein 99.7 5E-16 1.7E-20 159.6 21.5 333 81-490 61-393 (394)
120 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 157.7 11.7 167 335-524 21-187 (263)
121 4fs7_A Uncharacterized protein 99.7 8.6E-16 2.9E-20 157.8 20.8 316 53-389 58-374 (394)
122 1dce_A Protein (RAB geranylger 99.7 2.5E-19 8.7E-24 191.5 -6.5 204 281-527 346-551 (567)
123 1dce_A Protein (RAB geranylger 99.7 2.3E-19 7.7E-24 191.9 -7.1 216 259-516 346-567 (567)
124 1xeu_A Internalin C; cellular 99.7 8.2E-17 2.8E-21 155.3 11.2 168 43-253 20-187 (263)
125 4fdw_A Leucine rich hypothetic 99.7 3.5E-15 1.2E-19 152.4 23.7 261 65-367 112-380 (401)
126 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.5E-21 145.8 12.6 152 259-417 41-193 (197)
127 4fdw_A Leucine rich hypothetic 99.7 1.9E-15 6.4E-20 154.5 21.1 265 213-522 113-383 (401)
128 2o6r_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 137.7 13.1 133 383-526 9-141 (177)
129 2ell_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 140.0 9.2 136 41-181 23-163 (168)
130 2wfh_A SLIT homolog 2 protein 99.6 1.4E-15 4.9E-20 139.1 12.8 130 385-526 14-143 (193)
131 2ell_A Acidic leucine-rich nuc 99.6 8.9E-16 3E-20 137.4 11.1 134 381-524 24-162 (168)
132 4b8c_D Glucose-repressible alc 99.6 2.3E-16 7.8E-21 174.1 7.1 181 324-522 215-404 (727)
133 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 135.0 13.0 134 406-551 8-141 (177)
134 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.4E-21 174.8 4.6 162 339-519 207-369 (727)
135 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 133.0 8.9 127 381-517 17-148 (149)
136 4gt6_A Cell surface protein; l 99.6 1.7E-13 5.7E-18 140.7 25.7 299 54-367 51-367 (394)
137 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 133.7 7.4 128 42-174 17-149 (149)
138 3g39_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 131.3 10.1 110 406-526 10-119 (170)
139 2r9u_A Variable lymphocyte rec 99.5 2.6E-14 8.9E-19 128.2 10.3 109 407-526 14-122 (174)
140 3g39_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 126.0 11.8 110 438-551 10-119 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 7.9E-19 129.2 8.5 134 377-522 15-153 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.6E-19 129.3 8.3 133 400-545 14-152 (176)
143 4gt6_A Cell surface protein; l 99.5 2.1E-12 7.2E-17 132.5 23.5 336 78-449 51-390 (394)
144 2r9u_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 123.0 11.9 109 439-551 14-122 (174)
145 1ds9_A Outer arm dynein; leuci 99.5 5.7E-16 1.9E-20 142.7 -4.8 133 355-500 16-155 (198)
146 1ds9_A Outer arm dynein; leuci 99.5 6.1E-16 2.1E-20 142.5 -6.3 154 377-545 14-184 (198)
147 2ifg_A High affinity nerve gro 99.4 9.6E-13 3.3E-17 132.7 9.9 129 408-547 11-142 (347)
148 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.6E-17 131.7 10.1 103 385-498 12-116 (347)
149 4h09_A Hypothetical leucine ri 99.3 2.6E-10 9E-15 116.3 24.0 166 209-382 190-357 (379)
150 4h09_A Hypothetical leucine ri 99.3 6.5E-10 2.2E-14 113.3 24.5 314 62-405 42-356 (379)
151 3un9_A NLR family member X1; l 99.2 6.1E-13 2.1E-17 134.5 -4.0 167 43-230 73-256 (372)
152 3un9_A NLR family member X1; l 99.1 4.2E-12 1.4E-16 128.3 0.2 109 262-370 72-196 (372)
153 2ra8_A Uncharacterized protein 98.8 1.1E-09 3.7E-14 109.6 1.8 144 350-498 165-320 (362)
154 2ra8_A Uncharacterized protein 98.7 7E-09 2.4E-13 103.7 4.7 58 87-148 168-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 5.2E-08 1.8E-12 87.8 1.5 111 42-153 36-164 (185)
156 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.4E-12 88.9 2.6 80 89-171 168-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 5.1E-07 1.7E-11 81.3 4.5 110 260-369 34-163 (185)
158 3rw6_A Nuclear RNA export fact 98.2 8.5E-07 2.9E-11 83.9 5.3 66 459-526 168-237 (267)
159 3e4g_A ATP synthase subunit S, 98.1 6.2E-07 2.1E-11 78.5 0.9 82 67-150 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.4E-11 76.5 1.9 60 436-495 84-149 (176)
161 3rfe_A Platelet glycoprotein I 97.9 1.1E-05 3.6E-10 67.5 5.5 60 464-526 11-72 (130)
162 3rfe_A Platelet glycoprotein I 97.6 8.1E-05 2.8E-09 62.1 5.7 56 441-498 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00035 1.2E-08 62.3 4.1 109 43-152 42-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0012 4E-08 58.9 4.6 107 262-368 41-168 (197)
165 2lz0_A Uncharacterized protein 85.7 0.95 3.2E-05 35.0 4.5 45 103-149 8-52 (100)
166 2lz0_A Uncharacterized protein 78.9 3.9 0.00013 31.5 5.7 44 81-125 10-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-63 Score=553.37 Aligned_cols=540 Identities=29% Similarity=0.380 Sum_probs=387.1
Q ss_pred hhccCCCCCcEEEcCCCCceeecch--hhhhcCccchhcccceeeccCcccCccchhhh-cCCCCCCEEEccCCcCCCcc
Q 040607 6 IELHNLTNLENLTLDNSFFHVSLLQ--SIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-KSMTSLKLLSLSNSRLNGTI 82 (629)
Q Consensus 6 ~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~i 82 (629)
..++++++|++|||++|.+.+.+|. .++.+ ..|++|++++|.+.+..|..+ .++++|++|++++|.+++..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l------~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC------SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC------TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCC------CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence 4677788888888888888777776 66655 355566666665555544433 44455555555555444222
Q ss_pred Ccc------------------------ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCC
Q 040607 83 LDQ------------------------GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH 138 (629)
Q Consensus 83 ~~~------------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~ 138 (629)
+.. .+..+++|++|++++|.+++..|. +.++++|++|++++|.+++.+|. .+++
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~ 245 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIST 245 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTT
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhc
Confidence 210 124566666666666666665554 66677777777777776655544 6666
Q ss_pred CCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC-CCCcChhhcCCCCCCE
Q 040607 139 LKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS-GVTFPKFLYHQHDLKH 217 (629)
Q Consensus 139 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~ 217 (629)
+++|++|++++|.+++..+.. .+++|++|++++|.+.+..+......+.+|++|+++++. .+.+|..+..+++|++
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 777777777776665444321 566666666666666544443333334667777777443 3356666777777777
Q ss_pred EEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccC---------------------------CCccEEEcc
Q 040607 218 VNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR---------------------------RHLTYLDVS 270 (629)
Q Consensus 218 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------------~~L~~L~L~ 270 (629)
|++++|++.+.+|...+..+++|++|++++|.+++..+..+..+ ++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 77777777666666544666667777777666665444444443 445555555
Q ss_pred CCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc
Q 040607 271 DNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348 (629)
Q Consensus 271 ~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 348 (629)
+|.+.+..+ +..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 555544433 556677777777777777666665543 77788888888887777777777888888888888888878
Q ss_pred CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCC
Q 040607 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF 428 (629)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 428 (629)
.|..+..+++|++|++++|++.+.+|.+++.+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+...
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887777654321
Q ss_pred cc--------------------------------------------------------------ccCCCccCCCeeeccc
Q 040607 429 SI--------------------------------------------------------------KQGKPLNSMSGLDLSC 446 (629)
Q Consensus 429 ~~--------------------------------------------------------------~~~~~~~~L~~L~L~~ 446 (629)
.. .....+++|+.||+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 00 1123367899999999
Q ss_pred ccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 447 NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 447 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|++++.+|..++.+++|+.|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCCCCCC----CCCCCCCccc
Q 040607 527 DWVAQFATFNGSSYDGNPFLSS----SCNGEDDSLI 558 (629)
Q Consensus 527 ~~~~~~~~l~~l~~~~np~~c~----~C~~~~~~~~ 558 (629)
.. .++.++...++.|||..|+ .|.......+
T Consensus 722 ~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~ 756 (768)
T 3rgz_A 722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGY 756 (768)
T ss_dssp SS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC----
T ss_pred Cc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCC
Confidence 84 6788889999999999997 5764444433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-60 Score=532.41 Aligned_cols=530 Identities=26% Similarity=0.348 Sum_probs=351.6
Q ss_pred CCccchhccCCCCCcEEEcCCCCceee---cchhhhhcC-----------------ccchhcccceeeccCcccCccchh
Q 040607 1 CCSFLIELHNLTNLENLTLDNSFFHVS---LLQSIAVFG-----------------PWMVQCFIGFRAMDGTALDKNFLQ 60 (629)
Q Consensus 1 ~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~-----------------~~~~~~~l~~L~l~~~~~~~~~~~ 60 (629)
||+|...-++-.+++.|||+++.+.+. ++.++..+. ...-...|++|+|++|.+++.+|.
T Consensus 39 ~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (768)
T 3rgz_A 39 PCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118 (768)
T ss_dssp GGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGG
T ss_pred CcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCC
Confidence 677775544445677777777776665 444333320 011124788999999999998888
Q ss_pred --hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcc---cCCCCCCCeeecccccCCcccCccc
Q 040607 61 --VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWC---LGNMTSLQVLNISSNQLTGNISSPP 135 (629)
Q Consensus 61 --~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~ 135 (629)
.++++++|++|+|++|.+++.++...+.++++|++|++++|++++..+.. +.++++|++|++++|.+++.+ .
T Consensus 119 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~ 195 (768)
T 3rgz_A 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D 195 (768)
T ss_dssp GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC---B
T ss_pred hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC---C
Confidence 89999999999999999987777644588999999999999998877655 666666666666666665322 2
Q ss_pred cCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcC----------------------Cccccc
Q 040607 136 LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT----------------------PKFQLN 193 (629)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------------------~~~~L~ 193 (629)
+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ ..+. .+.+|+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 35555566666655555533331 5555555555555555432211 1123 334555
Q ss_pred EEEeccCCC-CCcChhhcCC-CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCC-CCcccCCCccEEEcc
Q 040607 194 SIILSHGSG-VTFPKFLYHQ-HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ-MPKHARRHLTYLDVS 270 (629)
Q Consensus 194 ~L~l~~~~~-~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~ 270 (629)
+|+++++.. +.+|..+... ++|++|++++|++.+.+|..+ ..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 555553322 2455555443 666666666666665566554 566666666666666663333 235666667777776
Q ss_pred CCCCccccc--CCC---------------------------CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccc
Q 040607 271 DNFFQVHIP--VGN---------------------------MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321 (629)
Q Consensus 271 ~n~~~~~~~--~~~---------------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 321 (629)
+|.+.+..+ +.. +++|++|++++|.+++.+|..+.. +++|++|++++|.+
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcc
Confidence 666543322 111 334444445444444444444332 55666666666666
Q ss_pred ccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccc
Q 040607 322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEF 401 (629)
Q Consensus 322 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 401 (629)
++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 65566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccc------------------------
Q 040607 402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI------------------------ 457 (629)
Q Consensus 402 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~------------------------ 457 (629)
..+++|++|++++|++.+.+|..+.. +++|+.|++++|.+++.+|..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGD--------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGG--------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcC--------CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 66666777777766666666666655 7788888888887776555432
Q ss_pred ----------------------------------------------ccccccceEeccCccccccccccccCCCCCCEEE
Q 040607 458 ----------------------------------------------GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD 491 (629)
Q Consensus 458 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 491 (629)
..+++|+.|+|++|++++.+|..|+++++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 2346788888888888888888888899999999
Q ss_pred CcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607 492 LSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL 546 (629)
Q Consensus 492 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~ 546 (629)
|++|++++.+|+.+..+++|+.||+++|++++.+|..+..+..++.+++++|+..
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999998889988989999999999999999989888888888888999888764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-57 Score=502.80 Aligned_cols=520 Identities=21% Similarity=0.222 Sum_probs=394.9
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
+++++|||++|.+.+..+..++.+ ..|++|++++|.+++..|.+++++++|++|+|++|.++ .+|+.+|.+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRY------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGG------TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCC------CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCC
Confidence 689999999999988777777776 57899999999999999999999999999999999998 78876799999
Q ss_pred CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCccc--CCCCCCcE
Q 040607 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPL--YNHSNLKI 169 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~ 169 (629)
+|++|++++|+++++++..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++ .+...+ ..+++|+.
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKK 175 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccE
Confidence 9999999999999998889999999999999999998 4444488999999999999998874 332333 35678889
Q ss_pred EECCCCcceeecCCCCcCC---------------------------cccccEEEeccCCC-CCcChhhcCCC--CCCEEE
Q 040607 170 FDSENNQIYAQTESHSLTP---------------------------KFQLNSIILSHGSG-VTFPKFLYHQH--DLKHVN 219 (629)
Q Consensus 170 L~l~~n~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~-~~~~~~l~~~~--~L~~L~ 219 (629)
|++++|.+....+.. +.. ..+|+.|+++++.. ...|..+..++ +|++|+
T Consensus 176 L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 999888776543321 111 13455555553332 22344444443 366666
Q ss_pred ccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEcc-----------------------------
Q 040607 220 LSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS----------------------------- 270 (629)
Q Consensus 220 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~----------------------------- 270 (629)
+++|++.+..|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 255 Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 255 LSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 66666664444443 556666666666666665555555555555555554
Q ss_pred ----CCCCccccc--CCCCCCccEEeccCCCCCc-ccchhhhhC--CCCCcEEEccCcccccccCcccCCCCCCcEEEcc
Q 040607 271 ----DNFFQVHIP--VGNMKSLSVLDLSKNRLIG-KIPERLAMG--CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLD 341 (629)
Q Consensus 271 ----~n~~~~~~~--~~~~~~L~~L~L~~n~l~~-~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 341 (629)
+|.+.+..+ +..+++|++|++++|.+.. .++...+.. .++|++|++++|++++..+..|..+++|+.|+++
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 444443332 4444555555555544221 122222211 1356666667777777777788888888888888
Q ss_pred CCcCcccCc-hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCccc--CCCCccccCCCcccEEEcccCcCC
Q 040607 342 GNHFIGEIP-ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE--GPIPMEFCQLNFLQILDISKKNIF 418 (629)
Q Consensus 342 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~ 418 (629)
+|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+.
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 888876554 67888888888888888887777778888888889998888876 467788999999999999999998
Q ss_pred CCCCCCcCCCccccCCCccCCCeeecccccCCCCCc--------cccccccccceEeccCccccccccccccCCCCCCEE
Q 040607 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP--------LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL 490 (629)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 490 (629)
+..+..+.. +++|+.|++++|.+++..+ ..+.++++|++|+|++|+++.+++..|.++++|++|
T Consensus 494 ~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 494 NINDDMLEG--------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp CCCTTTTTT--------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCChhhhcc--------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 888877766 8999999999999874322 237889999999999999998888889999999999
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccc-cccccCCCCCCCCCCCCCCCC
Q 040607 491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA-QFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 491 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~l~~~~np~~c~~C~ 551 (629)
++++|++++..+..|..+++|+.|++++|++++..+..+. .+++++.+++++|||.| +|+
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c-~c~ 626 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC-TCE 626 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB-CCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc-CCc
Confidence 9999999987777889999999999999999998887776 78999999999999999 886
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-56 Score=487.71 Aligned_cols=515 Identities=18% Similarity=0.160 Sum_probs=379.0
Q ss_pred CCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCC
Q 040607 13 NLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVH 92 (629)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 92 (629)
++++|||++|.+++..|..++.+ ..|++|++++|.+.+..|.+|+++++|++|+|++|.++ .+++.+|.++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL------INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC------TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTT
T ss_pred cCcEEEccCCccCcCChhHhccC------ccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhccccc
Confidence 45666666666655555555554 35556666666666555566666666666666666665 333335666666
Q ss_pred CcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCc--EE
Q 040607 93 LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK--IF 170 (629)
Q Consensus 93 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L 170 (629)
|++|++++|.++++.+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++ ..+...+..+++|+ .|
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEE
Confidence 666666666665555555566666666666666655 332223444666666666666555 23333455555555 56
Q ss_pred ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCC----CCChhHHhcCC--CCcEEe
Q 040607 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG----EFPNWLSENNT--KLQTLV 244 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~--~L~~L~ 244 (629)
++++|.+....+.. .....|+.|+++.+. .++..+..+.+++...+....+.+ .++...+..+. +++.++
T Consensus 185 ~l~~n~l~~~~~~~--~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 185 NLNGNDIAGIEPGA--FDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp ECTTCCCCEECTTT--TTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred ecCCCccCccChhH--hhhccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 66666555443322 122355555555332 233333333333333332221111 12222233333 789999
Q ss_pred ccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccc
Q 040607 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG 323 (629)
Q Consensus 245 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 323 (629)
+++|.++.+.+..|..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCccc
Confidence 99999999999999999999999999999986544 7889999999999999984444 444459999999999999885
Q ss_pred ccC-cccCCCCCCcEEEccCCcCcccC--chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCc-
Q 040607 324 HIF-SKKINLTNLWRLQLDGNHFIGEI--PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPM- 399 (629)
Q Consensus 324 ~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 399 (629)
..+ ..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 554 45889999999999999998765 77899999999999999999888888999999999999999999877654
Q ss_pred cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC---CccccccccccceEeccCcccccc
Q 040607 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE---IPLRIGNLTRIHTLNVSHNKLTGL 476 (629)
Q Consensus 400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~ 476 (629)
.+..+++|++|++++|.+.+..|..+.. +++|+.|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTT--------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhC--------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 4899999999999999999888888876 89999999999999752 335788999999999999999999
Q ss_pred ccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 477 ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+|..|.++++|++|++++|++++..|+.+..+++| .|++++|++++..|..+..+++++.+++++|||.| +|+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-TCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-SGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-cCC
Confidence 99999999999999999999999999999999999 99999999999988888999999999999999999 775
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-56 Score=502.24 Aligned_cols=486 Identities=19% Similarity=0.171 Sum_probs=326.1
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
..+++|||++|.+++..|..|.++++|++|+|++|...+.+++++|.++++|++|+|++|++.++.|.+|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45566666666666655666666666666666666444455444566666666666666666666666666666666666
Q ss_pred cccccCCcccCc-cccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCc--ccccEEEec
Q 040607 122 ISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPK--FQLNSIILS 198 (629)
Q Consensus 122 L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~ 198 (629)
+++|.+++.++. ..++++++|++|++++|.+++..+...|.++++|++|++++|.+...... .+..+ .+|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECC
Confidence 666666543332 12566666666666666665333323456666666666666655443221 12222 456666666
Q ss_pred cC-CCCCcChhhcCCCC------CCEEEccCCCCCCCCChhHHhc-----------------------------------
Q 040607 199 HG-SGVTFPKFLYHQHD------LKHVNLSHINLRGEFPNWLSEN----------------------------------- 236 (629)
Q Consensus 199 ~~-~~~~~~~~l~~~~~------L~~L~L~~n~l~~~~~~~~~~~----------------------------------- 236 (629)
.+ .....|..+..+.+ |+.|++++|.+.+..+..+...
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 22 22333333333332 6666666665554444333221
Q ss_pred --CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCc
Q 040607 237 --NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLR 312 (629)
Q Consensus 237 --~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 312 (629)
.++++.|++++|.+....+..|..+++|+.|++++|.+....+ +..+++|++|++++|.+. .++...+..+++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCC
Confidence 2567777777777777777777777777777777777766544 667777777777777776 33333344577777
Q ss_pred EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCc
Q 040607 313 YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392 (629)
Q Consensus 313 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 392 (629)
+|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|++. .+|.. ...++.+++++|.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence 777777777766666677777777777777776632 22667777777777776 33332 3567788888888
Q ss_pred ccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-----CCCccccccccccceE
Q 040607 393 LEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-----GEIPLRIGNLTRIHTL 466 (629)
Q Consensus 393 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L 466 (629)
+.+... ..+..+++|++|++++|++.+..+.... ..+++|+.|++++|.++ +..+..|.++++|++|
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred cccCchhhhhhcCCccceeeCCCCccccccccccc-------ccCCccccccCCCCccccccccccchhhhcCcccccEE
Confidence 875422 2356889999999999999766544221 12789999999999986 3445678899999999
Q ss_pred eccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL 546 (629)
Q Consensus 467 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~ 546 (629)
+|++|.++++++..|.++++|++|++++|++++..|..+. ++|+.|++++|++++..|..+ .+++.+++++|||.
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 9999999999999999999999999999999987777666 899999999999999988754 47888999999999
Q ss_pred CCCCC
Q 040607 547 SSSCN 551 (629)
Q Consensus 547 c~~C~ 551 (629)
| +|+
T Consensus 561 C-~c~ 564 (844)
T 3j0a_A 561 C-ECE 564 (844)
T ss_dssp C-SSS
T ss_pred c-ccc
Confidence 9 453
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-54 Score=476.21 Aligned_cols=488 Identities=19% Similarity=0.169 Sum_probs=349.9
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
..+++|++++|.+++..+.+|.++++|++|++++|.++ .+++.+|.++++|++|++++|+++++.|.+|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 34555555555555554445555555555555555554 34333455555555555555555555555555555555555
Q ss_pred cccccCCcccCccccCCCCCCCEEEccCccccc-ccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccc----cEEE
Q 040607 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQI-PISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQL----NSII 196 (629)
Q Consensus 122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L----~~L~ 196 (629)
+++|.++ .++...++++++|++|++++|.+++ .++ ..+.++++|++|++++|.+..... ..+..+.+| ..++
T Consensus 111 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 111 AVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLD 187 (606)
T ss_dssp CTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEE
T ss_pred ccCCccc-cccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccceee
Confidence 5555554 3433345555555555555555542 122 345555555555555555544322 112222222 2455
Q ss_pred eccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEE--------------------------------e
Q 040607 197 LSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL--------------------------------V 244 (629)
Q Consensus 197 l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L--------------------------------~ 244 (629)
++.+....++.......+|++|++++|.+.+......+..++.++.+ +
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 55444444443333333455555555544322222222344444433 3
Q ss_pred c-cCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccc
Q 040607 245 Q-VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG 323 (629)
Q Consensus 245 l-~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 323 (629)
+ ..+.+.+..+. +..+++|+.|++++|.+.....+..+++|++|++++|.+. .+|.. .+++|++|++++|+..+
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSSCE
T ss_pred ccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcCcc
Confidence 3 44555555554 8889999999999999987667888999999999999994 88843 59999999999996554
Q ss_pred ccCcccCCCCCCcEEEccCCcCccc--CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCC-cc
Q 040607 324 HIFSKKINLTNLWRLQLDGNHFIGE--IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-ME 400 (629)
Q Consensus 324 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~ 400 (629)
.. .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..+ ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 33 677899999999999998866 47889999999999999999884 66889999999999999999998877 68
Q ss_pred ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCC-CCccccccccccceEeccCccccccccc
Q 040607 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILS 479 (629)
Q Consensus 401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 479 (629)
+..+++|++|++++|.+.+..|..+.. +++|+.|++++|.+++ ..|..+..+++|++|++++|.+++.+|.
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLG--------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred hhccccCCEEECcCCCCCccchhhhcC--------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 999999999999999999988888877 8999999999999986 3788899999999999999999999999
Q ss_pred cccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccccc-ccCCCCCCCCCCCCCCCC
Q 040607 480 TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-TFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 480 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~~~~np~~c~~C~ 551 (629)
.|.++++|++|++++|++++..|..|..+++|+.|++++|+++ .+|..+..++ +++.+++++|||.| +|+
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c-~c~ 562 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC-ICE 562 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC-SST
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc-CCc
Confidence 9999999999999999999988999999999999999999999 4555577776 59999999999999 786
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-53 Score=474.52 Aligned_cols=518 Identities=18% Similarity=0.153 Sum_probs=408.9
Q ss_pred hhccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCcc
Q 040607 6 IELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQ 85 (629)
Q Consensus 6 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~ 85 (629)
..++++++|++|||++|.+.+..|..++.+ ..|++|++++|.+++..+.+|+++++|++|++++|.++ .+++.
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 115 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKL------PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNN 115 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHC------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSC
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcc------cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChh
Confidence 468889999999999999998888888887 58999999999999776678999999999999999998 77766
Q ss_pred ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccC--CCCCCCEEEccCcccccccCCcccCC
Q 040607 86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLK--HLKSIQELKLSNNYFQIPISLGPLYN 163 (629)
Q Consensus 86 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~ 163 (629)
+|.++++|++|++++|.+++.++..+.++++|++|++++|.++ .++...+. .+++|++|++++|.+++..+ ..+..
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~ 193 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHA 193 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGG
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCCcccccCh-hhhhh
Confidence 8999999999999999999999888999999999999999998 55543443 56888999998888763222 23332
Q ss_pred C---------------------------CCCcEEECCCCcceeecCCCCcCCcc--cccEEEeccCCCCC-cChhhcCCC
Q 040607 164 H---------------------------SNLKIFDSENNQIYAQTESHSLTPKF--QLNSIILSHGSGVT-FPKFLYHQH 213 (629)
Q Consensus 164 l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~l~~~~ 213 (629)
+ ++|+.|++++|.+.+..+. .+..+. +|+.|+++++.... .|..+..++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence 2 3445555555554433221 122222 35555555333322 234455555
Q ss_pred CCCEEEccCCCCCCCCChh--------------------------------HHhcCCCCcEEeccCccccccCCCCcccC
Q 040607 214 DLKHVNLSHINLRGEFPNW--------------------------------LSENNTKLQTLVQVNNYLSGIFQMPKHAR 261 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~--------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 261 (629)
+|++|++++|++.+..|.. .+..+++|++|++++|.+.++.+..|..+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 5555555555544332221 23567889999999999999888899999
Q ss_pred CCccEEEccCCCCcccc-c---CCC--CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccC-cccCCCCC
Q 040607 262 RHLTYLDVSDNFFQVHI-P---VGN--MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF-SKKINLTN 334 (629)
Q Consensus 262 ~~L~~L~L~~n~~~~~~-~---~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~ 334 (629)
++|++|++++|.+.... + +.. .++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+ ..|.++++
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence 99999999999754221 1 222 3689999999999995444 455569999999999999987555 68899999
Q ss_pred CcEEEccCCcCcccCchhhhccccCCceeccccccC--CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEc
Q 040607 335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS--GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDI 412 (629)
Q Consensus 335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 412 (629)
|+.|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 511 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeC
Confidence 999999999999888999999999999999999986 467889999999999999999999888888999999999999
Q ss_pred ccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEEC
Q 040607 413 SKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL 492 (629)
Q Consensus 413 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 492 (629)
++|.+.+..+..+..........+++|+.|++++|.++...+..|.++++|++|+|++|+++++++..|.++++|+.|++
T Consensus 512 s~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp CSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence 99999765433221111111234899999999999999555567999999999999999999999999999999999999
Q ss_pred cCCcCCCCCCcccc-CCCCCCEEEcccCcCcccCC--Cccccccc
Q 040607 493 SYNKLTGKIPPQLV-ELNALAVFSVAHNKLSGKTP--DWVAQFAT 534 (629)
Q Consensus 493 ~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~--~~~~~~~~ 534 (629)
++|++++..|..+. .+++|+.+++++|++.|.++ .||..+..
T Consensus 592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 99999988887777 78999999999999999987 56655533
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-53 Score=467.42 Aligned_cols=486 Identities=17% Similarity=0.165 Sum_probs=421.8
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
++|++|||++|.+.+..+..++.+ ..|++|++++|.+++..|.+|+++++|++|+|++|.++ .+++.+|.+++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF------SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCT
T ss_pred CCcCEEECCCCCcCEeChhhccCC------ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcc
Confidence 789999999999998888888777 58999999999999988999999999999999999998 56555899999
Q ss_pred CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC---
Q 040607 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL--- 167 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--- 167 (629)
+|++|++++|.++++++..|.++++|++|++++|.+++ .+|. .++++++|++|++++|.+++ ++...+..+++|
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQV 182 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCccee-cChhhhhhhhccccc
Confidence 99999999999999998899999999999999999984 4565 89999999999999999984 444456665555
Q ss_pred -cEEECCCCcceeecCCCCcCCcccccEEEeccCCCC--CcChhhcCCCCCCEEEc------------------------
Q 040607 168 -KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV--TFPKFLYHQHDLKHVNL------------------------ 220 (629)
Q Consensus 168 -~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~L------------------------ 220 (629)
..|++++|.+....+.. +. ..+|++|+++++... ..|..+..++.++.+++
T Consensus 183 l~~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQA-FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cceeeccCCCcceeCccc-cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 48999999998765533 33 338999999966543 45677777777777666
Q ss_pred ---------cCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEec
Q 040607 221 ---------SHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDL 291 (629)
Q Consensus 221 ---------~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L 291 (629)
..+.+.+..|. +..+++|+.+++++|.+..++ .+..+++|++|++++|.+.....+ .+++|+.|++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l 335 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTL 335 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEE
T ss_pred ccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcccccC-CCCccceeec
Confidence 44555655555 467899999999999998765 788899999999999999655556 8999999999
Q ss_pred cCCCCCcccchhhhhCCCCCcEEEccCccccccc--CcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecccccc
Q 040607 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI--FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369 (629)
Q Consensus 292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 369 (629)
++|...+.+ .+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++ .|..+..+++|+.|++++|.+
T Consensus 336 ~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 336 TMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp ESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred cCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence 999665444 2335899999999999998763 7788899999999999999885 457899999999999999999
Q ss_pred CCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeecccc
Q 040607 370 SGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDLSCN 447 (629)
Q Consensus 370 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~n 447 (629)
.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+.. +++|+.|++++|
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n 483 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------TTNLTFLDLSKC 483 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------CCCCCEEECCCC
Confidence 98777 688999999999999999999999999999999999999999987 46777766 899999999999
Q ss_pred cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC-CCCEEEcccCcCcccCC
Q 040607 448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN-ALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 448 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~ 526 (629)
.+++..|..+..+++|++|++++|++++.+|..|.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999888899999999999999999999999999999999999999999999 6677788887 59999999999999888
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-53 Score=463.03 Aligned_cols=499 Identities=19% Similarity=0.130 Sum_probs=423.6
Q ss_pred chhccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCc
Q 040607 5 LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILD 84 (629)
Q Consensus 5 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~ 84 (629)
+.+++++++|++|+|++|.+.+..|..++.+ ..|++|++++|.+.+..|.+++++++|++|++++|.++ .+++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~ 122 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDF 122 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTC------TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGG
T ss_pred hhHhccCccceEEECCCCccceeChhhccCc------cccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCc
Confidence 4578999999999999999999888888887 58999999999999999999999999999999999998 6655
Q ss_pred cccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCC--EEEccCcccccccCCcccC
Q 040607 85 QGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ--ELKLSNNYFQIPISLGPLY 162 (629)
Q Consensus 85 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~ 162 (629)
..|.++++|++|++++|.++++....+.++++|++|++++|.++ .++...++.+++|+ +|++++|.+++. +...+
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~- 199 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAF- 199 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTT-
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCcc-ChhHh-
Confidence 58999999999999999999876556777999999999999998 66665899999999 999999999853 33344
Q ss_pred CCCCCcEEECCCCcceeecCCCCcCCcccccEEEecc---CCCCCc-ChhhcCCC--CCCEEEccCCCCCCCCChhHHhc
Q 040607 163 NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH---GSGVTF-PKFLYHQH--DLKHVNLSHINLRGEFPNWLSEN 236 (629)
Q Consensus 163 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~-~~~l~~~~--~L~~L~L~~n~l~~~~~~~~~~~ 236 (629)
...+|+.|++++|....... .-.....++.+.+.. .....+ +..+..+. +|+.|++++|++.+..+.. +..
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~--~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~ 276 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIF--KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHC 276 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHH--HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTT
T ss_pred hhccccccccCCchhHHHHh--hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH-hcc
Confidence 44689999999986211100 001111333444331 111112 22233332 7999999999998554444 478
Q ss_pred CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEE
Q 040607 237 NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL 314 (629)
Q Consensus 237 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 314 (629)
+++|+.|++++|.++.+ +..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+.++...+..+++|++|
T Consensus 277 l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 99999999999999965 4468899999999999999987655 78899999999999999888888777779999999
Q ss_pred EccCccccccc--CcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccc-cccCCCCCccccCCCC
Q 040607 315 VLSNNKMKGHI--FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR-WLGNLSVSEDVIMPNN 391 (629)
Q Consensus 315 ~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n 391 (629)
++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 99999998776 77889999999999999999988899999999999999999999876554 4889999999999999
Q ss_pred cccCCCCccccCCCcccEEEcccCcCCCC---CCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEec
Q 040607 392 HLEGPIPMEFCQLNFLQILDISKKNIFGS---LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468 (629)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 468 (629)
.+.+..+..+..+++|++|++++|++.+. .+..+.. +++|+.|++++|.+++..|..|..+++|++|+|
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--------CCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 99998999999999999999999999763 2244544 899999999999999888899999999999999
Q ss_pred cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 469 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
++|++++..|..|.++++| .|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999 99999999998888889999999999999999999887
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-53 Score=477.26 Aligned_cols=483 Identities=19% Similarity=0.214 Sum_probs=393.1
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccc-hhhhcCCCCCCEEEccCCcCCCccCccccCC
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNF-LQVIKSMTSLKLLSLSNSRLNGTILDQGLCE 89 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~ 89 (629)
.++|++|||++|.+++..+..++.+ ..|++|+|++|...+.+ |.+|+++++|++|+|++|.++ .+++.+|.+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l------~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFL------EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSC------CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCS
T ss_pred CCCcCEEECCCCcCCccChhHCccc------ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccC
Confidence 5789999999999988888888777 58899999999665555 788999999999999999998 554558999
Q ss_pred CCCCcEEEccCCcCccCCCc--ccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCC--C
Q 040607 90 FVHLQELHVDHNNLYGVPPW--CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNH--S 165 (629)
Q Consensus 90 l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~ 165 (629)
+++|++|+|++|.+++..+. .|.++++|++|++++|.+++..+...++++++|++|++++|.+++. ....+..+ +
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~ 174 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGK 174 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHC
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCC
Confidence 99999999999999875443 4889999999999999998444444789999999999999988743 33456655 7
Q ss_pred CCcEEECCCCcceeecCCCCcCCc------ccccEEEeccCC-CCCcChh------------------------------
Q 040607 166 NLKIFDSENNQIYAQTESHSLTPK------FQLNSIILSHGS-GVTFPKF------------------------------ 208 (629)
Q Consensus 166 ~L~~L~l~~n~~~~~~~~~~~~~~------~~L~~L~l~~~~-~~~~~~~------------------------------ 208 (629)
+|+.|++++|.+....... +..+ ..|+.|+++.+. ....+..
T Consensus 175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 8888888888776543321 1221 247888887442 2222211
Q ss_pred ------hcC--CCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-
Q 040607 209 ------LYH--QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP- 279 (629)
Q Consensus 209 ------l~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~- 279 (629)
+.. .++|++|++++|.+.+..+..+ ..+++|+.|++++|.++...+..|..+++|++|++++|.+....+
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 112 2689999999999986666554 789999999999999999999999999999999999999987655
Q ss_pred -CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhcccc
Q 040607 280 -VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL 358 (629)
Q Consensus 280 -~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 358 (629)
+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++. ..+++|+.|++++|.++. +|.. ..+
T Consensus 333 ~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~ 402 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLT 402 (844)
T ss_dssp SCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTT
T ss_pred HhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccc
Confidence 889999999999999998 66666667799999999999998853 337899999999999984 4433 567
Q ss_pred CCceeccccccCCCc-cccccCCCCCccccCCCCcccCCCCc-cccCCCcccEEEcccCcCCCCC-----CCCcCCCccc
Q 040607 359 FGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMPNNHLEGPIPM-EFCQLNFLQILDISKKNIFGSL-----PSCFNPFSIK 431 (629)
Q Consensus 359 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~~ 431 (629)
++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.... +..+..
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~---- 478 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG---- 478 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC----
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC----
Confidence 899999999998643 33466899999999999999865443 4667899999999999987433 344444
Q ss_pred cCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCC
Q 040607 432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511 (629)
Q Consensus 432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 511 (629)
+++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++++..+. ++|+.|++++|++++..|+.| ++|
T Consensus 479 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L 549 (844)
T 3j0a_A 479 ----LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSL 549 (844)
T ss_dssp ----BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSC
T ss_pred ----cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCc
Confidence 89999999999999988888999999999999999999998888776 899999999999999988775 479
Q ss_pred CEEEcccCcCcccCC
Q 040607 512 AVFSVAHNKLSGKTP 526 (629)
Q Consensus 512 ~~L~l~~N~l~~~~~ 526 (629)
+.|++++|++.|.++
T Consensus 550 ~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 550 SVLDITHNKFICECE 564 (844)
T ss_dssp CEEEEEEECCCCSSS
T ss_pred CEEEecCCCcccccc
Confidence 999999999999887
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-49 Score=428.28 Aligned_cols=489 Identities=18% Similarity=0.162 Sum_probs=374.1
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
+++++||+++|.+++..+..++.+ ..|++|++++|.+++..+.+|+++++|++|+|++|.++ .+++.+|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSF------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTC------SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCT
T ss_pred ccccEEEccCCccCccChhHhhCC------CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcc
Confidence 467788888887777766666665 46778888888877777777778888888888888777 56655777888
Q ss_pred CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC---
Q 040607 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL--- 167 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--- 167 (629)
+|++|++++|+++++++..|.++++|++|++++|.+++ .+|. .++++++|++|++++|.++ ..+...+..+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc-eecHHHccchhccchh
Confidence 88888888888777776667778888888888887763 2454 6777888888888888776 3333456666666
Q ss_pred -cEEECCCCcceeecCCCCcCCcccccEEEeccCCC--CCcChhhcCCCCCCEEEccCCCCCC-----CCChhHHhcCC-
Q 040607 168 -KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG--VTFPKFLYHQHDLKHVNLSHINLRG-----EFPNWLSENNT- 238 (629)
Q Consensus 168 -~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~- 238 (629)
+.+++++|.+....+.. +. ..+|++|+++++.. ..++..+..++.++...+....+.. .++...+..++
T Consensus 179 ~~~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGA-FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhcccCCCCceecCHHH-hc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 67788887776654422 22 22677777775432 2355666667666665554322110 12222222333
Q ss_pred -CCcEEeccCc-cccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607 239 -KLQTLVQVNN-YLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV 315 (629)
Q Consensus 239 -~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 315 (629)
.++.+++.++ .+.+..+..+..+++|+.|++++|.+..... +..+ +|+.|++++|.+. .+|.. .+++|++|+
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~ 331 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLT 331 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEE
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEe
Confidence 2455666666 6666777888899999999999998876544 5566 9999999999988 77763 478999999
Q ss_pred ccCcccccccCcccCCCCCCcEEEccCCcCcccC--chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc
Q 040607 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI--PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393 (629)
Q Consensus 316 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 393 (629)
+++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEE
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcc
Confidence 999988765554 67899999999999987654 67888999999999999998854444 88899999999999999
Q ss_pred cCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-CCCccccccccccceEeccCc
Q 040607 394 EGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHN 471 (629)
Q Consensus 394 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 471 (629)
.+..+ ..+..+++|++|++++|.+.+..|..+.. +++|+.|++++|.++ +.+|..+..+++|++|++++|
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 87665 56889999999999999998888888776 899999999999987 467888999999999999999
Q ss_pred cccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607 472 KLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527 (629)
Q Consensus 472 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 527 (629)
++++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++.|.+|.
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99998888999999999999999999988888899999999999999999998884
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=425.51 Aligned_cols=481 Identities=20% Similarity=0.194 Sum_probs=394.5
Q ss_pred cEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCc
Q 040607 15 ENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQ 94 (629)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 94 (629)
++.+-++..++ .+|. .++..+++|++++|.+++..+.+|.++++|++|++++|.++ .+++++|.++++|+
T Consensus 10 ~~~~c~~~~l~-~ip~--------~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~ 79 (570)
T 2z63_A 10 ITYQCMELNFY-KIPD--------NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79 (570)
T ss_dssp TEEECCSSCCS-SCCS--------SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred cEEEeCCCCcc-ccCC--------CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCC
Confidence 45566655542 2333 23457889999999999888889999999999999999998 67766899999999
Q ss_pred EEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCccccc-ccCCcccCCCCCCcEEECC
Q 040607 95 ELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQI-PISLGPLYNHSNLKIFDSE 173 (629)
Q Consensus 95 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~ 173 (629)
+|++++|+++++++.+|.++++|++|++++|.++ .++...++++++|++|++++|.++. .++ ..+.++++|++|+++
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLS 157 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECT
T ss_pred EEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCc
Confidence 9999999999999889999999999999999998 7776579999999999999998874 233 568899999999999
Q ss_pred CCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCC----CEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc
Q 040607 174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDL----KHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY 249 (629)
Q Consensus 174 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 249 (629)
+|.+.... +..+..+++| +.+++++|.+.+..+..+ .. .+|+.|++++|.
T Consensus 158 ~n~l~~~~------------------------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~ 211 (570)
T 2z63_A 158 SNKIQSIY------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KE-IRLHKLTLRNNF 211 (570)
T ss_dssp TSCCCEEC------------------------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TT-CEEEEEEEESCC
T ss_pred CCccceec------------------------HHHccchhccchhhhhcccCCCCceecCHHHh-cc-CcceeEeccccc
Confidence 99876542 2345555556 899999999986666554 33 378999988763
Q ss_pred cc-------------------------------ccCCCCcccCCC--ccEEEccCC-CCccccc--CCCCCCccEEeccC
Q 040607 250 LS-------------------------------GIFQMPKHARRH--LTYLDVSDN-FFQVHIP--VGNMKSLSVLDLSK 293 (629)
Q Consensus 250 ~~-------------------------------~~~~~~~~~~~~--L~~L~L~~n-~~~~~~~--~~~~~~L~~L~L~~ 293 (629)
.. .+....+..++. ++.++++++ .+.+..+ +..+++|+.|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 21 122223333332 445566655 3333333 67789999999999
Q ss_pred CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373 (629)
Q Consensus 294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (629)
|.+. .+|..+.. + +|++|++++|.+.. .|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+..
T Consensus 292 ~~l~-~l~~~~~~-~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 292 VTIE-RVKDFSYN-F-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CEEC-SCCBCCSC-C-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE
T ss_pred ccch-hhhhhhcc-C-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc
Confidence 9988 78877664 5 99999999999984 343 4688999999999998766654 78899999999999988543
Q ss_pred --cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeecccccCC
Q 040607 374 --PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSCNKLT 450 (629)
Q Consensus 374 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 450 (629)
+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+.. +++|+.|++++|.+.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNLIYLDISHTHTR 434 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT--------CTTCCEEECTTSCCE
T ss_pred cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc--------CCCCCEEeCcCCccc
Confidence 67788999999999999999865544 9999999999999999987766 45555 899999999999999
Q ss_pred CCCccccccccccceEeccCcccc-ccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607 451 GEIPLRIGNLTRIHTLNVSHNKLT-GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529 (629)
Q Consensus 451 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 529 (629)
+..|..+.++++|++|++++|.++ +..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 888899999999999999999998 5678899999999999999999998889999999999999999999999988888
Q ss_pred ccccccCCCCCCCCCCCCCCCC
Q 040607 530 AQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 530 ~~~~~l~~l~~~~np~~c~~C~ 551 (629)
..+++++.+++++||+.| +|+
T Consensus 515 ~~l~~L~~L~l~~N~~~~-~~~ 535 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDC-SCP 535 (570)
T ss_dssp TTCTTCCEEECCSSCBCC-CTT
T ss_pred hcccCCcEEEecCCcccC-CCc
Confidence 999999999999999999 775
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-48 Score=423.19 Aligned_cols=482 Identities=18% Similarity=0.151 Sum_probs=295.5
Q ss_pred cEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCc
Q 040607 15 ENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQ 94 (629)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 94 (629)
.+.|.+++.++ .+|.. ++..+++|++++|.+++..|.+++++++|++|++++|.++ .+++.+|.++++|+
T Consensus 8 ~~c~~~~~~l~-~ip~~--------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSG--------LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLE 77 (549)
T ss_dssp SEEECTTSCCS-SCCSC--------CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred ceEECCCCccc-ccccc--------CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCC
Confidence 34577777664 33332 2357889999999999888888999999999999999998 66666899999999
Q ss_pred EEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECC
Q 040607 95 ELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSE 173 (629)
Q Consensus 95 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 173 (629)
+|++++|.++++++..|.++++|++|++++|.+++ .++. .++++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 99999999999888889999999999999999873 2233 789999999999999985546666678899999999999
Q ss_pred CCcceeecCCCCcCCcccccEEEeccCCCCCcChhh-cCCCCCCEEEccCCCCCCCC--ChhHHhcCCCCcEEeccCccc
Q 040607 174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL-YHQHDLKHVNLSHINLRGEF--PNWLSENNTKLQTLVQVNNYL 250 (629)
Q Consensus 174 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~~ 250 (629)
+|.+.+..+ ..+..+.+|+.|+++.+....+|..+ ..+++|++|++++|++.+.. +..+...+++|+.|++++|.+
T Consensus 157 ~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 157 ALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp ETTCCEECT-TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred CCcccccCh-hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 998866543 33445556666666655555555443 34666777777776665421 222223456666666666655
Q ss_pred cccCC----CCcccCCCccEEEccCCCCccccc--------CCCCCCccEEeccCCCCCcccc----hhhhhCCCCCcEE
Q 040607 251 SGIFQ----MPKHARRHLTYLDVSDNFFQVHIP--------VGNMKSLSVLDLSKNRLIGKIP----ERLAMGCFSLRYL 314 (629)
Q Consensus 251 ~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L 314 (629)
++... ..+..+++++.+++++|.+.+... +..+++++.|++.++.+..... ...+...++|++|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 53221 123345566666666665543221 3445566666666555432100 0111224456666
Q ss_pred EccCcccccccCcccCCCCCCcEEEccCCcCcccCch---hhhccccCCceeccccccCCCcc--ccccCCCCCccccCC
Q 040607 315 VLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE---SLSNCNLFGGLYLSDNHLSGKIP--RWLGNLSVSEDVIMP 389 (629)
Q Consensus 315 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~ 389 (629)
++++|.+.......+..+++|+.|++++|.+++..|. .+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 6666665532222223456666666666665544322 24455566666666666553321 335555666666666
Q ss_pred CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS 469 (629)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 469 (629)
+|.++ .+|..+..+++|++|++++|.+.+. |..+ .++|+.|++++|++++.. ..+++|++|+|+
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcccc-cchh----------cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 66555 3445555555666666666655322 2221 245555666666555321 345556666666
Q ss_pred CccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
+|+++.++. ...+++|++|++++|++++..|+.+..+++|+.|++++|++.|.+|
T Consensus 460 ~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 460 RNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 665553322 2345556666666666655555555555566666666666555554
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-47 Score=422.05 Aligned_cols=493 Identities=19% Similarity=0.150 Sum_probs=365.0
Q ss_pred hhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607 40 VQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119 (629)
Q Consensus 40 ~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 119 (629)
+|..+++|||++|.|++..+.+|.++++|++|+|++|.++ .+++++|.++++|++|+|++|+++++++.+|.++++|++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 3456777788877777766677777777888888777777 666667777777888888877777777777777777888
Q ss_pred eecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcc----cccEE
Q 040607 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKF----QLNSI 195 (629)
Q Consensus 120 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----~L~~L 195 (629)
|++++|.++ .++...|+++++|++|++++|.++.......+..+++|++|++++|.+....... +..+. ....+
T Consensus 129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSL 206 (635)
T ss_dssp EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEE
T ss_pred EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhh
Confidence 888777777 6666567777778888887777763222345667777778887777776543321 11111 22344
Q ss_pred EeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEec------------------------------
Q 040607 196 ILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ------------------------------ 245 (629)
Q Consensus 196 ~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l------------------------------ 245 (629)
+++.+....++........++.+++.+|......+...+..++.++...+
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 45544444444444444445555555554332222333334444433332
Q ss_pred cCcccc---ccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccc
Q 040607 246 VNNYLS---GIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322 (629)
Q Consensus 246 ~~n~~~---~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 322 (629)
..+... ......+.....++.+++.++.+....++.....++.|++.+|.+. .++.. .+..|+.+++..|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCC
Confidence 211111 1122345566778888888887776666777788999999998876 34332 3678999999998876
Q ss_pred cccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCC-Cc
Q 040607 323 GHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI-PM 399 (629)
Q Consensus 323 ~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~ 399 (629)
... .+..+++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..+..+..++.|+.+++..+...... ..
T Consensus 363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 363 NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccc
Confidence 433 34578999999999998753 45667778899999999998876 34556788999999999988776554 35
Q ss_pred cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-CCCccccccccccceEeccCcccccccc
Q 040607 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLIL 478 (629)
Q Consensus 400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 478 (629)
.+..+++++.++++.|.+.+..+..+.. ++.++.|++++|.+. +..|..|..+++|++|+|++|++++++|
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccccccccccccccccccccccccc--------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 6888999999999999998888888766 899999999999753 3567889999999999999999999999
Q ss_pred ccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc-cccCCCCCCCCCCCCCCCC
Q 040607 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF-ATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 479 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~~~~np~~c~~C~ 551 (629)
..|.++++|++|+|++|+|++..|..|.++++|++||+++|++++..|..+..+ .+++.+++++|||.| +|+
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C-~C~ 584 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC-TCE 584 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC-SGG
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc-cCC
Confidence 999999999999999999999889999999999999999999999999988887 689999999999999 775
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-47 Score=413.07 Aligned_cols=463 Identities=17% Similarity=0.121 Sum_probs=387.0
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
++|++|||++|.+++..|..++.+ ..|++|++++|.+++..|++|+++++|++|++++|.++ .+++..|.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC------ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhcC------CcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCC
Confidence 589999999999998888888776 58999999999999988899999999999999999998 67765799999
Q ss_pred CCcEEEccCCcCccC-CCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607 92 HLQELHVDHNNLYGV-PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 170 (629)
+|++|++++|.++++ .+..|.++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceE
Confidence 999999999999875 346899999999999999985558887689999999999999999985544 578999999999
Q ss_pred ECCCCcceeecCCCCcCCcccccEEEeccCCCCCc---C-hhhcCCCCCCEEEccCCCCCCCCChhHH---hcCCCCcEE
Q 040607 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF---P-KFLYHQHDLKHVNLSHINLRGEFPNWLS---ENNTKLQTL 243 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L 243 (629)
++++|.+..... ..+..+.+|++|+++++....+ | .....+++|+.|++++|.+.+..+..+. ..+++++.+
T Consensus 178 ~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 178 TLHLSESAFLLE-IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEECSBSTTHHH-HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred ecccCcccccch-hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 999998643322 1123467999999996665543 2 2234578899999999988765554432 457899999
Q ss_pred eccCccccccCC------CCcccCCCccEEEccCCCCcccccCC-------CCCCccEEeccCCCCCcccchhhhhCCCC
Q 040607 244 VQVNNYLSGIFQ------MPKHARRHLTYLDVSDNFFQVHIPVG-------NMKSLSVLDLSKNRLIGKIPERLAMGCFS 310 (629)
Q Consensus 244 ~l~~n~~~~~~~------~~~~~~~~L~~L~L~~n~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 310 (629)
++++|.+.+... ..+..+++++.+++.++.+.....+. ..++|+.|++++|.+. .+|..++..+++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence 999998876532 24567889999999999876543322 3468999999999988 899988777999
Q ss_pred CcEEEccCcccccccC---cccCCCCCCcEEEccCCcCcccCc--hhhhccccCCceeccccccCCCccccccCCCCCcc
Q 040607 311 LRYLVLSNNKMKGHIF---SKKINLTNLWRLQLDGNHFIGEIP--ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385 (629)
Q Consensus 311 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (629)
|++|++++|++.+..+ ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++. .+|..+..+++|+.
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence 9999999999987653 347789999999999999986543 56889999999999999998 67888889999999
Q ss_pred ccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccce
Q 040607 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHT 465 (629)
Q Consensus 386 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 465 (629)
|++++|.+.+. +..+ .++|++|++++|++.+... . +++|+.|++++|+++ .+|. ...+++|++
T Consensus 415 L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~~----~--------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 415 LNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFSL----F--------LPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp EECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCCC----C--------CTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred EECCCCCcccc-cchh--cCCceEEECCCCChhhhcc----c--------CChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 99999999843 3332 2689999999999977532 2 789999999999998 6665 467899999
Q ss_pred EeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607 466 LNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 466 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
|+|++|++++.++..|..+++|+.|++++|++++..|
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999999999999999999986555
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-47 Score=406.69 Aligned_cols=438 Identities=18% Similarity=0.200 Sum_probs=267.0
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.+++|++++|.+++..|.+|.++++|++|+|++|.++ .+++.+|.++++|++|++++|+++++++. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 4555555555555555555555555555555555555 33333455555555555555555544432 4555555555
Q ss_pred ccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC--cEEECCCCcceeecCCCCcCCcccccEEEecc
Q 040607 123 SSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL--KIFDSENNQIYAQTESHSLTPKFQLNSIILSH 199 (629)
Q Consensus 123 ~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 199 (629)
++|.+++ .+|. .++++++|++|++++|.+++ ..+..+++| +.|++++|.+..
T Consensus 98 ~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~-------------------- 152 (520)
T 2z7x_B 98 SFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG-------------------- 152 (520)
T ss_dssp CSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT--------------------
T ss_pred cCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc--------------------
Confidence 5555542 1222 45555555555555555442 123333333 444444443310
Q ss_pred CCCCCcChhhcCCC-CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCC-----
Q 040607 200 GSGVTFPKFLYHQH-DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF----- 273 (629)
Q Consensus 200 ~~~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~----- 273 (629)
....|..+..+. ....+++++|.+.+.++. ..+..+++|+.+++++|.
T Consensus 153 --~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 153 --EKEDPEGLQDFNTESLHIVFPTNKEFHFILD------------------------VSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp --SSCCTTTTTTCCEEEEEEECCSSSCCCCCCC------------------------CCCTTCSEEEECCEEECCSTTTT
T ss_pred --cccccccccccccceEEEEeccCcchhhhhh------------------------hhhhcccceeecccccccccccc
Confidence 011222222222 122334444444433333 344455556666666554
Q ss_pred --Cccccc-CCCCCCccEEeccCCCCCcccchhhhh--CCCCCcEEEccCcccccccCccc-----CCCCCCcEEEccCC
Q 040607 274 --FQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAM--GCFSLRYLVLSNNKMKGHIFSKK-----INLTNLWRLQLDGN 343 (629)
Q Consensus 274 --~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n 343 (629)
+.+..+ +..+++|+.|++++|.+.+..+..+.. ..++|++|++++|++.+..|..+ ..+++|+.+++++|
T Consensus 207 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred ceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence 222222 566777777777777665433222211 14578888888888877777766 77788888888888
Q ss_pred cCcccCc-hhhhcc---ccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC
Q 040607 344 HFIGEIP-ESLSNC---NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG 419 (629)
Q Consensus 344 ~l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 419 (629)
.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 287 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 287 VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred ce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 77 334 444444 56888888888775432 12567788888888888887777788888888888888888765
Q ss_pred --CCCCCcCCCccccCCCccCCCeeecccccCCCCCcc-ccccccccceEeccCccccccccccccCCCCCCEEECcCCc
Q 040607 420 --SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPL-RIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496 (629)
Q Consensus 420 --~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 496 (629)
..|..+.. +++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|+
T Consensus 363 l~~~~~~~~~--------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 363 LSKIAEMTTQ--------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp HHHHHHHHTT--------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred cccchHHHhh--------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 33444544 77888888888888763554 477778888888888888776665554 678888888888
Q ss_pred CCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 497 LTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 497 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
++ .+|..+..+++|++|++++|+++...+..+..+++++.+++++||+.| +|+
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-~c~ 485 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP 485 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc-cCC
Confidence 88 667766688888888888888885444446777888888888888887 553
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-47 Score=414.53 Aligned_cols=368 Identities=17% Similarity=0.207 Sum_probs=210.6
Q ss_pred CcCccCCCcccCCCCCCCeeecccccCCcc-----------------cCccccC--CCCCCCEEEccCcccccccCCccc
Q 040607 101 NNLYGVPPWCLGNMTSLQVLNISSNQLTGN-----------------ISSPPLK--HLKSIQELKLSNNYFQIPISLGPL 161 (629)
Q Consensus 101 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~ 161 (629)
|++++ .|..|.++++|++|++++|.+++. +|. .++ ++++|++|++++|.+.+.+| ..+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~l 269 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TFL 269 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HHH
Confidence 44544 333455555555555555555532 444 444 55555555555555554444 345
Q ss_pred CCCCCCcEEECCCCc-ceeecCCCCcCCcccccEEEeccCCCCCcChhhcCC------CCCCEEEccCCCCCCCCCh--h
Q 040607 162 YNHSNLKIFDSENNQ-IYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ------HDLKHVNLSHINLRGEFPN--W 232 (629)
Q Consensus 162 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~------~~L~~L~L~~n~l~~~~~~--~ 232 (629)
.++++|++|++++|. +.+. .+|..+..+ ++|++|++++|+++ .+|. .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~-----------------------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGE-----------------------QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHH-----------------------HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred hcCCCCCEEECcCCCCCccc-----------------------cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 555555555555554 3210 133333332 55666666666655 4554 3
Q ss_pred HHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCC-ccEEeccCCCCCcccchhhhh-CCC
Q 040607 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKS-LSVLDLSKNRLIGKIPERLAM-GCF 309 (629)
Q Consensus 233 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~-L~~L~L~~n~l~~~~~~~~~~-~~~ 309 (629)
+ ..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+..... +..+++ |+.|++++|.++ .+|..+.. .++
T Consensus 326 l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 L-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp H-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred h-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 3 455556666665555553333 55555555555555555542221 444444 555555555554 44443221 012
Q ss_pred CCcEEEccCcccccccCcccC-------CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCcccc-ccCCC
Q 040607 310 SLRYLVLSNNKMKGHIFSKKI-------NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRW-LGNLS 381 (629)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~ 381 (629)
+|++|++++|.+.+..|..+. .+++|+.|++++|.++...+..+..+++|++|++++|.+. .+|.. +...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~- 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE- 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET-
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc-
Confidence 455555555555544444444 4445555555555554333333334445555555554444 22211 1100
Q ss_pred CCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC--CCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607 382 VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN--PFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459 (629)
Q Consensus 382 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 459 (629)
...+.++++|++|++++|.+. .+|..+. . +++|+.|++++|++++ +|..+..
T Consensus 481 ----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~--------l~~L~~L~Ls~N~l~~-ip~~~~~ 534 (636)
T 4eco_A 481 ----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATT--------LPYLVGIDLSYNSFSK-FPTQPLN 534 (636)
T ss_dssp ----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTT--------CTTCCEEECCSSCCSS-CCCGGGG
T ss_pred ----------------cccccccCCccEEECcCCcCC-ccChhhhhcc--------CCCcCEEECCCCCCCC-cChhhhc
Confidence 001223348888888888887 4555553 3 7888888888888885 7888888
Q ss_pred ccccceEec------cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607 460 LTRIHTLNV------SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529 (629)
Q Consensus 460 l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 529 (629)
+++|++|+| ++|++.+..|..+.++++|++|++++|++. .+|..+. ++|+.|++++|++.+.....+
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTT
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhc
Confidence 888999988 567788888999999999999999999995 7787765 799999999999887655433
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=402.97 Aligned_cols=438 Identities=17% Similarity=0.166 Sum_probs=305.7
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
++|++|||++|.+.+..|..++.+ ..|++|++++|.+++..|++|+++++|++|+|++|.++ .+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL------SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC------TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCC
T ss_pred ccccEEECCCCcccccChhhcccc------ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccC
Confidence 789999999999988888888777 58999999999999999999999999999999999998 88873 899
Q ss_pred CCcEEEccCCcCccC-CCcccCCCCCCCeeecccccCCcccCccccCCCCCC--CEEEccCccc--ccccCCcccCCCC-
Q 040607 92 HLQELHVDHNNLYGV-PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSI--QELKLSNNYF--QIPISLGPLYNHS- 165 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~- 165 (629)
+|++|++++|+++++ .|..|.++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+ ..+..+.
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~ 165 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNT 165 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccccccc-cccccccc
Confidence 999999999999885 46799999999999999999983 267788888 9999999998 53333 3444444
Q ss_pred CCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC-------CCCCCChhHHhcCC
Q 040607 166 NLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN-------LRGEFPNWLSENNT 238 (629)
Q Consensus 166 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~-------l~~~~~~~~~~~~~ 238 (629)
+...+++++|.+.... .+..+..+++|+.+++++|. +.+.+| . +..++
T Consensus 166 ~~l~l~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~ 220 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFI-----------------------LDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNP 220 (520)
T ss_dssp EEEEEECCSSSCCCCC-----------------------CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCT
T ss_pred ceEEEEeccCcchhhh-----------------------hhhhhhcccceeeccccccccccccceeecchh-h-hcccc
Confidence 2334566666553321 12346678889999999987 443333 2 25677
Q ss_pred CCcEEeccCccccccCCCCc---ccCCCccEEEccCCCCccccc--C-----CCCCCccEEeccCCCCCcccc-hhhhhC
Q 040607 239 KLQTLVQVNNYLSGIFQMPK---HARRHLTYLDVSDNFFQVHIP--V-----GNMKSLSVLDLSKNRLIGKIP-ERLAMG 307 (629)
Q Consensus 239 ~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~--~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~~ 307 (629)
+|+.|++++|.+++.....+ ...++|++|++++|.+.+..| + ..+++|+.+++++|.+ .+| ..++..
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence 88888887776654211100 012467777777776664444 2 5566666666666665 444 222221
Q ss_pred --CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcc
Q 040607 308 --CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385 (629)
Q Consensus 308 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (629)
..+|++|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------ 364 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------------ 364 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------------
T ss_pred cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------------
Confidence 145666666666654321 1134555666666666555555555555555555555555554210
Q ss_pred ccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccccc
Q 040607 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH 464 (629)
Q Consensus 386 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 464 (629)
..|..+..+++|++|++++|.+.+.+|. .+.. +++|+.|++++|.+++..|..+. ++|+
T Consensus 365 ----------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 365 ----------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------TKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp ----------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------CTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred ----------cchHHHhhCCCCCEEECCCCcCCcccccchhcc--------CccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 2234455666666666666666553333 2333 67777788888877655555443 7899
Q ss_pred eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 465 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
+|++++|+++.+ |..+..+++|++|++++|+++...+..|..+++|+.|++++|++.|.++
T Consensus 425 ~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 425 VLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999854 5555589999999999999995443448899999999999999998877
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-44 Score=398.82 Aligned_cols=489 Identities=18% Similarity=0.158 Sum_probs=388.8
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV 91 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 91 (629)
+++++|||++|.++...+..|+.+ ..|++|+|++|.|++..+++|+++++|++|+|++|+++ .+|++.|.+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l------~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSF------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCC------CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCC
Confidence 379999999999998888888887 58999999999999988889999999999999999998 88887899999
Q ss_pred CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCC----C
Q 040607 92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSN----L 167 (629)
Q Consensus 92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~----L 167 (629)
+|++|++++|+++++++..|.++++|++|++++|.+++.-.+..++.+++|++|++++|.+++ +....+..+.+ .
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhh
Confidence 999999999999999998999999999999999999732223378999999999999999984 33345554433 3
Q ss_pred cEEECCCCcceeecCCCCcCCcccccEEEeccCCCC--CcChhhcCCCCCCEEEcc------------------------
Q 040607 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV--TFPKFLYHQHDLKHVNLS------------------------ 221 (629)
Q Consensus 168 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~L~------------------------ 221 (629)
..++++.|.+....... .....++.+.+.++... ..+..+..+..++...+.
T Consensus 204 ~~~~ls~n~l~~i~~~~--~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CEEECTTCCCCEECTTT--TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhcccCcccccCccc--ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 47889999887654422 22234455555533221 122333444444433332
Q ss_pred ------CCCCCC---CCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607 222 ------HINLRG---EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292 (629)
Q Consensus 222 ------~n~l~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~ 292 (629)
.+.... ..+.. +.....++.+.+.++.+.... .+.....++.|++.+|.+.... ...+..|+.+++.
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFT 357 (635)
T ss_dssp EEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEE
T ss_pred hhhhhhhhhhcccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC-cccchhhhhcccc
Confidence 211110 11111 245567888888888777654 3556778999999999876443 3567889999999
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCccccc--ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKG--HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS 370 (629)
Q Consensus 293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 370 (629)
.|.... .+... .+++|+++++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.++++++...
T Consensus 358 ~n~~~~-~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 358 SNKGGN-AFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp SCCSCC-BCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEE
T ss_pred cccCCC-Ccccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccc
Confidence 998763 33222 48899999999998753 344556678899999999998764 3456788999999999988765
Q ss_pred CCc-cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcC-CCCCCCCcCCCccccCCCccCCCeeeccccc
Q 040607 371 GKI-PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI-FGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448 (629)
Q Consensus 371 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 448 (629)
... +..+..+..++.++++.|.+.+..+..+..+++|+.|++++|+. .+..|..+.. +++|+.|+|++|+
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQ 505 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh--------ccccCEEECCCCc
Confidence 544 35678899999999999999999999999999999999999985 4456777766 8999999999999
Q ss_pred CCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCC-CCCCEEEcccCcCcccCC
Q 040607 449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 449 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 526 (629)
+++..|..|.++++|++|+|++|+|+++++..|.++++|++|++++|+|++..|+.|..+ ++|+.|++++|++.|.|.
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 998889999999999999999999999999999999999999999999999999999988 689999999999999887
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-44 Score=401.79 Aligned_cols=447 Identities=16% Similarity=0.126 Sum_probs=270.9
Q ss_pred CCCcEEEcCCCCceeecchhhhhcCccchhcccceeec-cCcccCccchhhh----------------------------
Q 040607 12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAM-DGTALDKNFLQVI---------------------------- 62 (629)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l-~~~~~~~~~~~~l---------------------------- 62 (629)
.+++.|+|+++.+.|.+|..++++ ..|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L------~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~ 396 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQL------TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGC------TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEECccCCCCCcCchHHhcc------ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence 689999999999999999999888 58999999 8887765522110
Q ss_pred -----------------------cCCCCCCEEEccC--CcCCCccCccccCCCCCCcEEEccCCcCcc------------
Q 040607 63 -----------------------KSMTSLKLLSLSN--SRLNGTILDQGLCEFVHLQELHVDHNNLYG------------ 105 (629)
Q Consensus 63 -----------------------~~l~~L~~L~Ls~--n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~------------ 105 (629)
.....++.+.+.. |.+++ +|. .|.++++|++|+|++|++++
T Consensus 397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence 1112233333333 66774 776 78889999999999999888
Q ss_pred -----CCCcccC--CCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcc-ccc-ccCC------cccCCCCCCcEE
Q 040607 106 -----VPPWCLG--NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY-FQI-PISL------GPLYNHSNLKIF 170 (629)
Q Consensus 106 -----~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~-l~~-~~~~------~~~~~l~~L~~L 170 (629)
..|..+. ++++|++|++++|.+.+.+|. .++++++|++|++++|. +++ .+|. ..+..+++|+.|
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 1444655 899999999999988878885 88999999999999997 765 4442 134456689999
Q ss_pred ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCC-CcEEeccCcc
Q 040607 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTK-LQTLVQVNNY 249 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~ 249 (629)
++++|.+...+....+..+.+|+.|+++++....+| .+..+++|++|++++|++. .+|..+ ..+++ |+.|++++|.
T Consensus 554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSC
T ss_pred EeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCC
Confidence 998888762211012333334444444433333444 3444444445555544444 444433 23333 4444444444
Q ss_pred ccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhh---h-hCCCCCcEEEccCccccccc
Q 040607 250 LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL---A-MGCFSLRYLVLSNNKMKGHI 325 (629)
Q Consensus 250 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~-~~~~~L~~L~L~~n~l~~~~ 325 (629)
++.+ +..+..... ++|+.|++++|.+.+.+|... . ...++|++|++++|.+....
T Consensus 631 L~~l-p~~~~~~~~--------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 631 LKYI-PNIFNAKSV--------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp CCSC-CSCCCTTCS--------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred CCcC-chhhhcccc--------------------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 4422 222222221 224555555555443332111 0 01234555555555555322
Q ss_pred CcccCCCCCCcEEEccCCcCcccCchh-hh-------ccccCCceeccccccCCCcccccc--CCCCCccccCCCCcccC
Q 040607 326 FSKKINLTNLWRLQLDGNHFIGEIPES-LS-------NCNLFGGLYLSDNHLSGKIPRWLG--NLSVSEDVIMPNNHLEG 395 (629)
Q Consensus 326 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~-------~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~ 395 (629)
+..+..+++|+.|++++|.++ .+|.. +. .+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 222334555555555555554 22222 11 2336777777777776 5555555 67777777777777775
Q ss_pred CCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccc
Q 040607 396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG 475 (629)
Q Consensus 396 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 475 (629)
+|..+..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|+|++|+++
T Consensus 768 -lp~~l~~L~~L~~L~Ls~N~--------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~- 819 (876)
T 4ecn_A 768 -FPTQPLNSSQLKAFGIRHQR--------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR- 819 (876)
T ss_dssp -CCCGGGGCTTCCEEECCCCB--------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-
T ss_pred -cchhhhcCCCCCEEECCCCC--------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-
Confidence 56667777788888887763 34556666677777777777777777777774
Q ss_pred cccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607 476 LILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG 523 (629)
Q Consensus 476 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 523 (629)
.+|..+. ++|+.|++++|++....+..+.....+..+.+.+|++..
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 3444443 577788888887776666665555555666666666553
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-45 Score=404.64 Aligned_cols=474 Identities=15% Similarity=0.169 Sum_probs=306.8
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCC------C------ccCccccCCCCCCcEEEccCCcCccCCCcc
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLN------G------TILDQGLCEFVHLQELHVDHNNLYGVPPWC 110 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 110 (629)
.++.|+|+++.+.|.+|.+++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.++..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 4557777777777777777777777777777777541 1 222211 23344 555555554444433
Q ss_pred cCC-CCCCCeeecccccCCcccCccccCCCCCCCEEEcc--CcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcC
Q 040607 111 LGN-MTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS--NNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187 (629)
Q Consensus 111 ~~~-l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 187 (629)
+.. +..+..+++....+. ......++.+.+. +|.+++ +|. .+.++++|++|++++|.+.+......+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred HHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCcccccccccccc
Confidence 331 111222222211111 0001112222221 344443 442 3555555555555555554310000000
Q ss_pred CcccccEEEeccCCCCCcChhhc--CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc-ccc-cCCCCcccC--
Q 040607 188 PKFQLNSIILSHGSGVTFPKFLY--HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY-LSG-IFQMPKHAR-- 261 (629)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~-- 261 (629)
+.. .....+.+|..+. .+++|++|++++|++.+.+|..+ ..+++|+.|++++|. +++ ..+..+..+
T Consensus 229 ~~~-------~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~ 300 (636)
T 4eco_A 229 NEN-------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALAD 300 (636)
T ss_dssp CTT-------SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred ccc-------cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhc
Confidence 000 0000001445555 56666666666666665666554 456666666666665 554 333333333
Q ss_pred ----CCccEEEccCCCCccccc---CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCC
Q 040607 262 ----RHLTYLDVSDNFFQVHIP---VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTN 334 (629)
Q Consensus 262 ----~~L~~L~L~~n~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 334 (629)
++|++|++++|.+..... ++.+++|+.|++++|.+.|.+| .+..+++|++|++++|++. .+|..+..+++
T Consensus 301 ~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp SGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred cccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 677777777777764433 6677778888888888777777 3334778888888888877 56667777877
Q ss_pred -CcEEEccCCcCcccCchhhhccc--cCCceeccccccCCCcccccc-------CCCCCccccCCCCcccCCCCccccCC
Q 040607 335 -LWRLQLDGNHFIGEIPESLSNCN--LFGGLYLSDNHLSGKIPRWLG-------NLSVSEDVIMPNNHLEGPIPMEFCQL 404 (629)
Q Consensus 335 -L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l 404 (629)
|+.|++++|.++ .+|..+...+ +|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 888888888877 5666666544 788888888888877777777 67789999999999986555566778
Q ss_pred CcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc--cccccceEeccCcccccccccccc
Q 040607 405 NFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG--NLTRIHTLNVSHNKLTGLILSTFS 482 (629)
Q Consensus 405 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~ 482 (629)
++|++|++++|.+....+..+... ......+++|+.|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+.
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDE-NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEET-TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred CCCCEEECCCCCCCCcCHHHhccc-cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 999999999999974443333220 000112349999999999999 7888876 99999999999999998 677888
Q ss_pred CCCCCCEEEC------cCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 483 NLKQTESLDL------SYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 483 ~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
++++|++|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++++.+++++||+.|
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9999999999 56788889999999999999999999999 57776544 799999999999977
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-44 Score=389.04 Aligned_cols=454 Identities=20% Similarity=0.220 Sum_probs=281.8
Q ss_pred ceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccc
Q 040607 45 GFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124 (629)
Q Consensus 45 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 124 (629)
++++++++.+++ +|..+. ++|++|++++|.++ .+++.+|.++++|++|++++|+++++.|++|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 577777777774 555443 67777777777777 56555777777777777777777777777777777777777777
Q ss_pred ccCCcccCccccCCCCCCCEEEccCcccccccC-CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPIS-LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203 (629)
Q Consensus 125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (629)
|.++ .+|.. .+++|++|++++|.+++ ++ ...|.++++|++|++++|.+... .+....+|
T Consensus 110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L----------- 169 (562)
T 3a79_B 110 NRLQ-NISCC---PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL----------- 169 (562)
T ss_dssp SCCC-EECSC---CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTS-----------
T ss_pred CcCC-ccCcc---ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCccccC----chhhhhhc-----------
Confidence 7777 67752 67777777777777763 22 24677777777777777766431 11111111
Q ss_pred CcChhhcCCCCCCEEEccCCCC--CCCCChhHHhcCC-CCcEEeccCcccccc-CCCCcccCCCccEEEccCCCCc----
Q 040607 204 TFPKFLYHQHDLKHVNLSHINL--RGEFPNWLSENNT-KLQTLVQVNNYLSGI-FQMPKHARRHLTYLDVSDNFFQ---- 275 (629)
Q Consensus 204 ~~~~~l~~~~~L~~L~L~~n~l--~~~~~~~~~~~~~-~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~---- 275 (629)
+|++|++++|++ .+..|..+ ..+. ..-.+++++|.+... ....+..+++|+.+++++|...
T Consensus 170 ----------~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l 238 (562)
T 3a79_B 170 ----------HLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238 (562)
T ss_dssp ----------CEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH
T ss_pred ----------eeeEEEeecccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH
Confidence 124455555444 33333332 1111 011233344433321 1122334556666666665411
Q ss_pred -ccc-cCCCCCCccEEeccCCCCCcc----cchhhhhCCCCCcEEEccCcccccccCccc-----CCCCCCcEEEccCCc
Q 040607 276 -VHI-PVGNMKSLSVLDLSKNRLIGK----IPERLAMGCFSLRYLVLSNNKMKGHIFSKK-----INLTNLWRLQLDGNH 344 (629)
Q Consensus 276 -~~~-~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~ 344 (629)
+.. .+..+++|+.++++++.+.+. ++.... .++|++|++++|.+++.+|..+ ..++.|+.+++..+.
T Consensus 239 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 111 145566666676666655432 122221 3477777777777776666655 455555555666555
Q ss_pred CcccCc-hhhhc---cccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC
Q 040607 345 FIGEIP-ESLSN---CNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS 420 (629)
Q Consensus 345 l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 420 (629)
+ .+| ..+.. ..+|+.|++++|.+.... ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 5 223 22222 256777788777765322 125667778888888887777777777778888888888777653
Q ss_pred C--CCCcCCCccccCCCccCCCeeecccccCCCCCc-cccccccccceEeccCccccccccccccCCCCCCEEECcCCcC
Q 040607 421 L--PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497 (629)
Q Consensus 421 ~--~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 497 (629)
. |..+.. +++|+.|++++|.+++.+| ..+..+++|++|++++|++++..+..+. ++|++|++++|++
T Consensus 393 ~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 393 FKVALMTKN--------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp THHHHTTTT--------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred ccchhhhcC--------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 2 234444 6778888888888775343 3467777888888888877765554443 6778888888887
Q ss_pred CCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 498 TGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 498 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+ .+|..+..+++|+.|++++|+++...+..+..+++++.+++++|||.| +|+
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-~c~ 514 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-TCP 514 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC-CHH
T ss_pred c-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC-Ccc
Confidence 7 556555577788888888888875444446777777778888888877 554
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-43 Score=394.33 Aligned_cols=462 Identities=19% Similarity=0.177 Sum_probs=275.2
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEc-cCCcCCCccCccccCCCCCCc-----EEEc----------cCCcCc-
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSL-SNSRLNGTILDQGLCEFVHLQ-----ELHV----------DHNNLY- 104 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~i~~~~~~~l~~L~-----~L~L----------~~n~i~- 104 (629)
..+..|+|+++.+.|.+|++++++++|++|+| ++|.+.|..+.........+. .+.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 35779999999999999999999999999999 888776543321100000000 0000 000000
Q ss_pred ----------cCCCcccCCCCCCCeeeccc--ccCCcccCccccCCCCCCCEEEccCccccc-----------------c
Q 040607 105 ----------GVPPWCLGNMTSLQVLNISS--NQLTGNISSPPLKHLKSIQELKLSNNYFQI-----------------P 155 (629)
Q Consensus 105 ----------~~~~~~~~~l~~L~~L~L~~--n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-----------------~ 155 (629)
...+........++.+.+.. |.+++ +|. .++++++|++|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000111122233333332 45553 554 45555555555555555553 1
Q ss_pred cCCcccC--CCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC-CCC-CCCh
Q 040607 156 ISLGPLY--NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN-LRG-EFPN 231 (629)
Q Consensus 156 ~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~-l~~-~~~~ 231 (629)
+|. .+. ++++|+.|++++|.+. +.+|..+..+++|++|++++|+ +++ .+|.
T Consensus 481 iP~-~l~f~~L~~L~~L~Ls~N~l~------------------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 481 ENE-ELSWSNLKDLTDVELYNCPNM------------------------TQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp TTS-CCCGGGCTTCCEEEEESCTTC------------------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCh-hhhhccCCCCCEEECcCCCCC------------------------ccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 232 222 4444444444444332 2344445555555555555554 544 4444
Q ss_pred hHH------hcCCCCcEEeccCccccccCCC--CcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchh
Q 040607 232 WLS------ENNTKLQTLVQVNNYLSGIFQM--PKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPER 303 (629)
Q Consensus 232 ~~~------~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 303 (629)
.+. ..+++|+.|++++|.++. .+. .+..+++|+.|++++|.+.....+..+++|+.|++++|.+. .+|..
T Consensus 536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 536 DWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp HHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTT
T ss_pred HHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHH
Confidence 431 112355555555555552 223 45555556666666655553333555566666666666665 55554
Q ss_pred hhhCCCC-CcEEEccCcccccccCcccCCCCC--CcEEEccCCcCcccCchhh---h--ccccCCceeccccccCCCccc
Q 040607 304 LAMGCFS-LRYLVLSNNKMKGHIFSKKINLTN--LWRLQLDGNHFIGEIPESL---S--NCNLFGGLYLSDNHLSGKIPR 375 (629)
Q Consensus 304 ~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~ 375 (629)
+.. +++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+....+.
T Consensus 614 l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~ 691 (876)
T 4ecn_A 614 FCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691 (876)
T ss_dssp SCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH
T ss_pred Hhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH
Confidence 433 455 666666666665 44455544433 6666666666655433211 1 223566666666666633223
Q ss_pred cccCCCCCccccCCCCcccCCCCcccc-------CCCcccEEEcccCcCCCCCCCCcC--CCccccCCCccCCCeeeccc
Q 040607 376 WLGNLSVSEDVIMPNNHLEGPIPMEFC-------QLNFLQILDISKKNIFGSLPSCFN--PFSIKQGKPLNSMSGLDLSC 446 (629)
Q Consensus 376 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~ 446 (629)
.+..+++|+.|++++|.+....+..+. ++++|+.|++++|++. .+|..+. . +++|+.|+|++
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~--------l~~L~~L~Ls~ 762 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT--------LPYLSNMDVSY 762 (876)
T ss_dssp HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT--------CTTCCEEECCS
T ss_pred HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc--------CCCcCEEEeCC
Confidence 334566666666666666632222222 3348899999998887 5565554 4 78899999999
Q ss_pred ccCCCCCccccccccccceEeccC------ccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607 447 NKLTGEIPLRIGNLTRIHTLNVSH------NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK 520 (629)
Q Consensus 447 n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 520 (629)
|.+++ +|..+..+++|+.|+|++ |.+.+..|..|.++++|+.|++++|++ +.+|..+. ++|+.||+++|+
T Consensus 763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 99985 788888899999999976 788888999999999999999999999 47888765 699999999999
Q ss_pred CcccCCCccccccccCCCCCCCCCCCC
Q 040607 521 LSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 521 l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
+....+..+..........+.+|++.+
T Consensus 839 l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 839 NISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp TCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCccChHHccccccchheeecCCCccc
Confidence 998777766666666677778887765
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-44 Score=392.64 Aligned_cols=462 Identities=15% Similarity=0.115 Sum_probs=301.6
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF 90 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 90 (629)
+...+++|++++.++. +|..+ +..+++|++++|.+++..+.+|+++++|++|+|++|.++ .+++++|.++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~--------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 99 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDL--------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFN 99 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTS--------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTC
T ss_pred cCCCcEEEcCCCCCcc-CCCCC--------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCC
Confidence 4455899999999875 55532 368899999999999988899999999999999999998 6766689999
Q ss_pred CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc-cccCCCCCCCEEEccCcccccccCCcccCCCCCC--
Q 040607 91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL-- 167 (629)
Q Consensus 91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L-- 167 (629)
++|++|++++|+++.+++. .+++|++|++++|.++ .++. ..++++++|++|++++|.++. . .+..+++|
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L 171 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHL 171 (562)
T ss_dssp TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCE
T ss_pred CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-C---chhhhhhcee
Confidence 9999999999999988764 8999999999999998 5542 489999999999999999873 3 34445555
Q ss_pred cEEECCCCcc--eeecCCCCcCCcc-cccEEEeccC-CCCCcC-hhhcCCCCCCEEEccCCCCCC----CCChhHHhcCC
Q 040607 168 KIFDSENNQI--YAQTESHSLTPKF-QLNSIILSHG-SGVTFP-KFLYHQHDLKHVNLSHINLRG----EFPNWLSENNT 238 (629)
Q Consensus 168 ~~L~l~~n~~--~~~~~~~~~~~~~-~L~~L~l~~~-~~~~~~-~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~ 238 (629)
+.|++++|.+ ..... ..+..+. ..-.++++.+ ....++ ..+..+++|+.+++++|+... ..... +..++
T Consensus 172 ~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~ 249 (562)
T 3a79_B 172 SCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGP 249 (562)
T ss_dssp EEEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCS
T ss_pred eEEEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccC
Confidence 9999999987 33222 1111110 0112223322 112222 223344555555555553110 00111 13344
Q ss_pred CCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhh----hCCCCCcEE
Q 040607 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLA----MGCFSLRYL 314 (629)
Q Consensus 239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L 314 (629)
.++.+++.++.+... .+....+....++|++|++++|.+.+.+|..++ ..++.|+.+
T Consensus 250 ~L~~L~L~~~~l~~~-------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 250 TLLNVTLQHIETTWK-------------------CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp SCEEEEEEEEEECHH-------------------HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cceEEEecCCcCcHH-------------------HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 444444443332211 111111111223566666666665555555442 112233333
Q ss_pred EccCcccccccC-cccC---CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC
Q 040607 315 VLSNNKMKGHIF-SKKI---NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN 390 (629)
Q Consensus 315 ~L~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 390 (629)
++..+.+ ..| ..+. ...+|+.|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 311 ~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 311 HVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred hccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 3333332 111 1111 1245666666666654221 124566677777777776666666667777777777777
Q ss_pred CcccCCC--CccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607 391 NHLEGPI--PMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467 (629)
Q Consensus 391 n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 467 (629)
|.+++.. |..+..+++|++|++++|.+.+.+|. .+.. +++|+.|++++|.+++..|..+. ++|++|+
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--------AESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------cccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 7776532 35577888888888888888774443 3444 78899999999988765555443 7999999
Q ss_pred ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|++|+++.+++. +.++++|++|++++|+++...+..+..+++|+.|++++|++.|.++
T Consensus 457 L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 457 LHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999965544 4489999999999999995444448999999999999999999887
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-39 Score=343.89 Aligned_cols=384 Identities=18% Similarity=0.176 Sum_probs=243.8
Q ss_pred eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCc-cCCCcccCCCCCCCeeeccc
Q 040607 46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLY-GVPPWCLGNMTSLQVLNISS 124 (629)
Q Consensus 46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 124 (629)
.++.+++.++. +|. + .++|++|+|++|.++ .+++..|.++++|++|++++|.+. .+++..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCccc-CCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666553 343 2 256677777777666 443446666777777777776664 34455666667777777777
Q ss_pred ccCCcccCccccCCCCCCCEEEccCccccccc-CCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPI-SLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203 (629)
Q Consensus 125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (629)
|.++ .+++..++++++|++|++++|.+++.. ....+..+++|++|++++|.+
T Consensus 89 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-------------------------- 141 (455)
T 3v47_A 89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-------------------------- 141 (455)
T ss_dssp CTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC--------------------------
T ss_pred CccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc--------------------------
Confidence 6666 333336666666666666666665311 112244555555555555544
Q ss_pred CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccC--CCccEEEccCCCCccccc--
Q 040607 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR--RHLTYLDVSDNFFQVHIP-- 279 (629)
Q Consensus 204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~-- 279 (629)
.+..|..++..+++|++|++++|.+.+..+..+..+ .+++.+++++|.+....+
T Consensus 142 ----------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 142 ----------------------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp ----------------------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred ----------------------CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 333333323344444444444444444433333332 345555555555443322
Q ss_pred --------CCCCCCccEEeccCCCCCcccchhhhhC--CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC
Q 040607 280 --------VGNMKSLSVLDLSKNRLIGKIPERLAMG--CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349 (629)
Q Consensus 280 --------~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 349 (629)
+..+++|+.|++++|.+.+..+..+... ..+|+.|++++|...+.. +..+.+....
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~ 265 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPD 265 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCC
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCc
Confidence 2244667777777777765555554431 145555555555433210 0111111111
Q ss_pred chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCc
Q 040607 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFS 429 (629)
Q Consensus 350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 429 (629)
+..+.. ...++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..|..+..
T Consensus 266 ~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 321 (455)
T 3v47_A 266 NFTFKG----------------------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-- 321 (455)
T ss_dssp TTTTGG----------------------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--
T ss_pred cccccc----------------------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC--
Confidence 111111 01256777777777777777777888888888888888888877777766
Q ss_pred cccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC
Q 040607 430 IKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN 509 (629)
Q Consensus 430 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 509 (629)
+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..++
T Consensus 322 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 322 ------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp ------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 78899999999999877788899999999999999999999899999999999999999999987777889999
Q ss_pred CCCEEEcccCcCcccCCC
Q 040607 510 ALAVFSVAHNKLSGKTPD 527 (629)
Q Consensus 510 ~L~~L~l~~N~l~~~~~~ 527 (629)
+|+.|++++|+++|.+|.
T Consensus 396 ~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCBCCCTTT
T ss_pred cccEEEccCCCcccCCCc
Confidence 999999999999999984
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-39 Score=338.22 Aligned_cols=381 Identities=20% Similarity=0.201 Sum_probs=281.5
Q ss_pred CeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEe
Q 040607 118 QVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIIL 197 (629)
Q Consensus 118 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 197 (629)
+.++.+++.++ .+|. + .++|++|++++|.+++ +....+.++++|++|++++|.+....+
T Consensus 13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~--------------- 71 (455)
T 3v47_A 13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIR--------------- 71 (455)
T ss_dssp TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEEC---------------
T ss_pred cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceEC---------------
Confidence 45777777777 7764 2 2788899998888873 444568888888888888886642211
Q ss_pred ccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc--CCCCcccCCCccEEEccCCCCc
Q 040607 198 SHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI--FQMPKHARRHLTYLDVSDNFFQ 275 (629)
Q Consensus 198 ~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~n~~~ 275 (629)
+..+..+++|++|++++|++.+..|..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.
T Consensus 72 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 72 --------NNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp --------TTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred --------cccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 3446677788888888888875556654 6777788888877777653 2334667777777777777776
Q ss_pred cccc---CCCCCCccEEeccCCCCCcccchhhhh-CCCCCcEEEccCcccccccCccc--------CCCCCCcEEEccCC
Q 040607 276 VHIP---VGNMKSLSVLDLSKNRLIGKIPERLAM-GCFSLRYLVLSNNKMKGHIFSKK--------INLTNLWRLQLDGN 343 (629)
Q Consensus 276 ~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n 343 (629)
+..+ +..+++|++|++++|.+.+..+..+.. ...+++.|++++|.+.+..+..+ ..+++|+.|++++|
T Consensus 143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 6544 556777777777777776444443332 12567777777777665443322 24466777777777
Q ss_pred cCcccCchhhhcc---ccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc--CCCcccEEEcccCcCC
Q 040607 344 HFIGEIPESLSNC---NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC--QLNFLQILDISKKNIF 418 (629)
Q Consensus 344 ~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 418 (629)
.+++..|..+... ++++.|++++|...+... ..+.+.+..+..+. ..++|++|++++|.+.
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccc
Confidence 7766666555543 566667776665442211 11111112222222 2368999999999999
Q ss_pred CCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
+..|..+.. +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..+..|.++++|++|++++|+++
T Consensus 289 ~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 289 ALLKSVFSH--------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp EECTTTTTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ccchhhccc--------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 998988877 899999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 499 GKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 499 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.| +|+
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~ 412 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP 412 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CTT
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc-CCC
Confidence 8889999999999999999999998888878899999999999999999 775
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-38 Score=332.20 Aligned_cols=268 Identities=22% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCC-------------CEEEccCCc
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSL-------------KLLSLSNSR 77 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~Ls~n~ 77 (629)
.++|++|++++|.+ +.+|.+++++ ..|++|++++|.+.+.+|..++++++| ++|++++|.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L------~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENV------KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccchhhhcccCch-hhCChhHhcc------cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 56777777777777 6677766666 466777777777777777777776654 666666666
Q ss_pred CCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccC
Q 040607 78 LNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPIS 157 (629)
Q Consensus 78 l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 157 (629)
++ .+|. + .++|++|++++|.+++++. . .++|++|++++|.++ .++. + .++|++|++++|.+++ ++
T Consensus 83 l~-~lp~--~--~~~L~~L~l~~n~l~~lp~-~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 83 LS-SLPE--L--PPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CS-CCCS--C--CTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-CCCS--C--CTTCCEEECCSSCCSS-CC
T ss_pred cc-cCCC--C--cCCCCEEEccCCcCCcccc-c---cCCCcEEECCCCccC-cccC--C--CCCCCEEECcCCCCCC-Cc
Confidence 65 4443 1 2456666666666655432 1 255666666666655 3332 1 1456666666666552 33
Q ss_pred CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcC
Q 040607 158 LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237 (629)
Q Consensus 158 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 237 (629)
.+..+++|++|++++|.+.+. |.. ..+|++|++++|++.+ +|. +..+
T Consensus 148 --~~~~l~~L~~L~l~~N~l~~l-------------------------p~~---~~~L~~L~L~~n~l~~-l~~--~~~l 194 (454)
T 1jl5_A 148 --ELQNSSFLKIIDVDNNSLKKL-------------------------PDL---PPSLEFIAAGNNQLEE-LPE--LQNL 194 (454)
T ss_dssp --CCTTCTTCCEEECCSSCCSCC-------------------------CCC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred --ccCCCCCCCEEECCCCcCccc-------------------------CCC---cccccEEECcCCcCCc-Ccc--ccCC
Confidence 355566666666665554321 111 1256666666666653 442 2455
Q ss_pred CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEcc
Q 040607 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLS 317 (629)
Q Consensus 238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 317 (629)
++|+.|++++|.+++++.. .++|++|++++|.+.....+..+++|++|++++|++. .+|. .+++|++|+++
T Consensus 195 ~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~ 265 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVR 265 (454)
T ss_dssp TTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECC
T ss_pred CCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-cccc----cccccCEEECC
Confidence 6666666666655543221 1355555555555553333455555555555555554 2332 13455555555
Q ss_pred CcccccccCcccCCCCCCcEEEccCCcCc
Q 040607 318 NNKMKGHIFSKKINLTNLWRLQLDGNHFI 346 (629)
Q Consensus 318 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 346 (629)
+|++++ +|.. .++|+.|++++|.++
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccC
Confidence 555543 2211 244555555555444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-37 Score=325.64 Aligned_cols=402 Identities=22% Similarity=0.229 Sum_probs=168.7
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCC-------------cEEEccCCcCccCCC
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHL-------------QELHVDHNNLYGVPP 108 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L-------------~~L~L~~n~i~~~~~ 108 (629)
..+++|++++|.+ +.+|++++++++|++|++++|.+++.+|. .++.+.+| ++|++++|.+++++.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 4677888888888 67888888888888888888888766776 67777765 555555555544332
Q ss_pred cccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCC
Q 040607 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTP 188 (629)
Q Consensus 109 ~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 188 (629)
+ .++|++|++++|.++ .+|. . .++|++|++++|.+++ ++. + .++|++|++++|.+
T Consensus 89 --~--~~~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l----------- 143 (454)
T 1jl5_A 89 --L--PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQL----------- 143 (454)
T ss_dssp --C--CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCC-----------
T ss_pred --C--cCCCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCC-----------
Confidence 1 244555555555554 2432 1 2445555555554431 110 0 13344444444433
Q ss_pred cccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEE
Q 040607 189 KFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD 268 (629)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 268 (629)
..+| .+..+++|++|++++|++++ +|.. .++|++|++++|.+++++ .+..+++|+.|+
T Consensus 144 --------------~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~ 201 (454)
T 1jl5_A 144 --------------EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIY 201 (454)
T ss_dssp --------------SSCC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEE
T ss_pred --------------CCCc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEE
Confidence 2344 36666777777777777663 4432 246666666666666643 456666666666
Q ss_pred ccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc
Q 040607 269 VSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348 (629)
Q Consensus 269 L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 348 (629)
+++|.+.+.... .++|++|++++|.+. .+|. +..+++|++|++++|++++. |. ..++|+.|++++|.+++
T Consensus 202 l~~N~l~~l~~~--~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 202 ADNNSLKKLPDL--PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CCSSCCSSCCCC--CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-
T ss_pred CCCCcCCcCCCC--cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-
Confidence 666666542221 245666666666655 5553 23356666666666665532 22 12556666666665553
Q ss_pred CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCC-CcccEEEcccCcCCCCCCCCcCC
Q 040607 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQL-NFLQILDISKKNIFGSLPSCFNP 427 (629)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 427 (629)
+|.. .++|+.|++++|.+++. |.. .++|+.|++++|.+.+. ..+ ++|++|++++|.+.+ +|..
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---
Confidence 2221 24555566665555431 110 13455555555554431 112 245555555555443 2221
Q ss_pred CccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccc--cccccccCCCCCCEEECcCCcCCCCCCccc
Q 040607 428 FSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG--LILSTFSNLKQTESLDLSYNKLTGKIPPQL 505 (629)
Q Consensus 428 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 505 (629)
+++|+.|++++|.++ .+|. .+++|++|++++|++++ ..|..+. .| +.|...+.+|..
T Consensus 336 --------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~- 394 (454)
T 1jl5_A 336 --------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL- 394 (454)
T ss_dssp --------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------
T ss_pred --------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc-
Confidence 344555555555554 2333 23455555555555544 2222222 11 123333333321
Q ss_pred cCCCCCCEEEcccCcCcc--cCCCccccccccCCCCCCCCCCCC
Q 040607 506 VELNALAVFSVAHNKLSG--KTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 506 ~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
+++|+.|++++|++++ .+|.+ ++.+.+.+|.+.|
T Consensus 395 --~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 395 --PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp --------------------------------------------
T ss_pred --cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 2788888888888886 45543 3444555555544
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=326.76 Aligned_cols=342 Identities=15% Similarity=0.099 Sum_probs=244.1
Q ss_pred cEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCC
Q 040607 193 NSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN 272 (629)
Q Consensus 193 ~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 272 (629)
+.++.++.....+|..+. ++++.|++++|++.+..+..+ ..+++|++|++++|.++.+.+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 345555555556666443 467888888888775444443 67788888888888888777777878888888888888
Q ss_pred CCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc
Q 040607 273 FFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP 350 (629)
Q Consensus 273 ~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 350 (629)
.+....+ +..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 7775554 6677788888888887773 333444457788888888888777777777778888888888887776666
Q ss_pred hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607 351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430 (629)
Q Consensus 351 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 430 (629)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|++|++++|.+.+..+..+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence 67777888888888888777666667777778888888777766666655555567888888877776554445544
Q ss_pred ccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCC
Q 040607 431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNA 510 (629)
Q Consensus 431 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 510 (629)
+++|+.|++++|.+++..+..|..+++|+.|+|++|+++++.+..|.++++|++|++++|++++..+..|..+++
T Consensus 247 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 247 -----LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp -----CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred -----ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 677788888888777666667777778888888888877777777777788888888888877666666777777
Q ss_pred CCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 511 LAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 511 L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
|+.|++++|++.|.++.. ..........+.+++..|
T Consensus 322 L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 322 LETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp CCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBE
T ss_pred cCEEEccCCCccCccchH-hHHhhhhccccCccCcee
Confidence 888888888877766521 112233345566666665
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.8e-36 Score=316.76 Aligned_cols=345 Identities=26% Similarity=0.316 Sum_probs=171.8
Q ss_pred CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCC
Q 040607 64 SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ 143 (629)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~ 143 (629)
.+++++.|+++++.+. .++ .+..+++|++|++++|.++++++ +.++++|++|++++|.++ .++. +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence 3456777777777765 555 36666777777777777766654 667777777777777766 4432 66777777
Q ss_pred EEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCC
Q 040607 144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHI 223 (629)
Q Consensus 144 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n 223 (629)
+|++++|.+++ .+ .+..+++|++|++++|.+.... .+..+++|++|+++ +
T Consensus 116 ~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~l~-~ 165 (466)
T 1o6v_A 116 GLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISDIS--------------------------ALSGLTSLQQLSFG-N 165 (466)
T ss_dssp EEECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECCCG--------------------------GGTTCTTCSEEEEE-E
T ss_pred EEECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCCCh--------------------------hhccCCcccEeecC-C
Confidence 77777776652 22 2666666777776666553321 13333444444443 1
Q ss_pred CCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchh
Q 040607 224 NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPER 303 (629)
Q Consensus 224 ~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 303 (629)
.+.+. +. +..+++|+.|++++|.+.... .+..+++|++|++++|.+.+..+++.+++|+.|++++|.+. .++.
T Consensus 166 ~~~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~- 238 (466)
T 1o6v_A 166 QVTDL-KP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGT- 238 (466)
T ss_dssp SCCCC-GG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-
T ss_pred cccCc-hh--hccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchh-
Confidence 22211 11 133334444444443333221 23334444444444444444444444555555555555544 2221
Q ss_pred hhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCC
Q 040607 304 LAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS 383 (629)
Q Consensus 304 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 383 (629)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+
T Consensus 239 -l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------- 304 (466)
T 1o6v_A 239 -LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--------- 304 (466)
T ss_dssp -GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---------
T ss_pred -hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---------
Confidence 1224455555555555443322 4444555555555554443222 4444444444444444433221
Q ss_pred ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607 384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI 463 (629)
Q Consensus 384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 463 (629)
+..+++|+.|++++|++.+..| +.. +++|+.|++++|.+++. ..+..+++|
T Consensus 305 -----------------~~~l~~L~~L~L~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 305 -----------------ISNLKNLTYLTLYFNNISDISP--VSS--------LTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp -----------------GGGCTTCSEEECCSSCCSCCGG--GGG--------CTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred -----------------hcCCCCCCEEECcCCcCCCchh--hcc--------CccCCEeECCCCccCCc--hhhccCCCC
Confidence 3344444444444444443332 111 44555555555555422 234455555
Q ss_pred ceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555555555555443 455555555555555555
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-35 Score=311.53 Aligned_cols=343 Identities=23% Similarity=0.287 Sum_probs=166.8
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.+++|+++++.+.. +| .+..+++|++|++++|.++ .+++ +..+++|++|++++|.+.++++ +.++++|++|++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 34555555555543 23 2455555555555555555 3432 5555555555555555555443 555555555555
Q ss_pred ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCC
Q 040607 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG 202 (629)
Q Consensus 123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (629)
++|.++ .++ .+.++++|++|++++|.+.+ .+ .+..+++|+.|++++ .+.... .+..+.+|+.|+++++..
T Consensus 120 ~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~~---~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 120 FNNQIT-DID--PLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDLK---PLANLTTLERLDISSNKV 189 (466)
T ss_dssp CSSCCC-CCG--GGTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCCG---GGTTCTTCCEEECCSSCC
T ss_pred CCCCCC-CCh--HHcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCch---hhccCCCCCEEECcCCcC
Confidence 555555 333 25555555555555555542 21 355555555555532 111110 012222222222222222
Q ss_pred CCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCC
Q 040607 203 VTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGN 282 (629)
Q Consensus 203 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 282 (629)
..++ .+..+++|++|++++|++.+..| +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..++..
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhc
Confidence 2222 24455556666666665553333 23455555555555555543 234455555555555555555444555
Q ss_pred CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362 (629)
Q Consensus 283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 362 (629)
+++|+.|++++|.+. .++. +..+++|++|++++|++.+..+ +..+++|+.|++++|.+++..| +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 555555555555555 2222 2235555555555555554322 4445555555555555554333 4455555555
Q ss_pred eccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC
Q 040607 363 YLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG 419 (629)
Q Consensus 363 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 419 (629)
++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555555432 234445555555555555544433 4445555555555554433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-35 Score=311.51 Aligned_cols=363 Identities=17% Similarity=0.162 Sum_probs=203.4
Q ss_pred cCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc
Q 040607 54 LDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS 133 (629)
Q Consensus 54 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~ 133 (629)
..+..+..++++++|++|++++|.++ .+| ++..+++|++|++++|++++++ +.++++|++|++++|.++ .++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~-~~~- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLT-NLD- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS-CCC-
T ss_pred cCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCc-eee-
Confidence 33444456777788888888888877 454 4777788888888888877763 677788888888888777 442
Q ss_pred cccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCC
Q 040607 134 PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQH 213 (629)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 213 (629)
++++++|++|++++|.+++ ++ +..+++|+.|++++|.+.+.. +..++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~---------------------------l~~l~ 148 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID---------------------------VSHNT 148 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC---------------------------CTTCT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec---------------------------cccCC
Confidence 6777888888888887763 32 667777888888877765421 22334
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~ 293 (629)
+|++|++++|+..+.++ +..+++|+.|++++|.+++++ +..+++|+.|++++|.+.+. ++..+++|+.|++++
T Consensus 149 ~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 149 QLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSS 221 (457)
T ss_dssp TCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCS
T ss_pred cCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcC
Confidence 44555555443222221 134445555555555554432 44455555555555555543 355555666666666
Q ss_pred CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373 (629)
Q Consensus 294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (629)
|++++ +| +..+++|++|++++|++++.. +..+++|+.|++++| +|+.|++++|...+.+
T Consensus 222 N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 222 NKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp SCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred Ccccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence 66553 44 223556666666666655432 234455555555543 2344555555544444
Q ss_pred cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607 374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI 453 (629)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 453 (629)
| ++.+++|+.|++++|...+.+|. ..++|+.|++++ +++|+.|++++|++++.
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~---------------------~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ---------------------NPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT---------------------CTTCCEEECTTCCCSCC-
T ss_pred c--ccccccCCEEECCCCcccceecc---CCCcceEechhh---------------------cccCCEEECCCCccccc-
Confidence 3 34455555555555554443332 223344444333 23455555666655542
Q ss_pred ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607 454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527 (629)
Q Consensus 454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 527 (629)
+ +..+++|+.|++++|+++++ +.|+.|++++|.+++. ..+..|+.+++++|+++|.+|.
T Consensus 334 ~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 334 D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 2 55555666666666655541 3344445555555533 1233445556666666665554
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=318.03 Aligned_cols=323 Identities=21% Similarity=0.202 Sum_probs=287.8
Q ss_pred CCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEecc
Q 040607 215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLS 292 (629)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~ 292 (629)
-+.++.++++++ .+|..+ .+.++.|++++|.++.+.+..|..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 457888888887 677654 3688999999999999988999999999999999999987755 8899999999999
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK 372 (629)
Q Consensus 293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (629)
+|.+. .+|...+..+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 89 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99988 77877777799999999999999988888999999999999999999988888999999999999999999977
Q ss_pred ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC
Q 040607 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452 (629)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 452 (629)
.+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+..+..+..... ..+|+.|++++|.+++.
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------GLNLTSLSITHCNLTAV 239 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------TCCCSEEEEESSCCCSC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------CccccEEECcCCccccc
Confidence 7778999999999999999999888888999999999999999887766665543 45899999999999965
Q ss_pred CccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF 532 (629)
Q Consensus 453 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 532 (629)
.+..+..+++|+.|+|++|.++++.+..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 55788999999999999999999888889999999999999999998889999999999999999999998888878889
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 040607 533 ATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 533 ~~l~~l~~~~np~~c~~C~ 551 (629)
++++.+++++|||.| +|.
T Consensus 320 ~~L~~L~l~~N~l~c-~c~ 337 (477)
T 2id5_A 320 GNLETLILDSNPLAC-DCR 337 (477)
T ss_dssp GGCCEEECCSSCEEC-SGG
T ss_pred cccCEEEccCCCccC-ccc
Confidence 999999999999999 664
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-34 Score=303.87 Aligned_cols=355 Identities=18% Similarity=0.197 Sum_probs=271.5
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
..+++|++++|.+++. | .++.+++|++|++++|.++ .++ +..+++|++|++++|.+++++ +.++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence 4678888888888864 5 5888889999999998887 453 778888999999999888763 78888999999
Q ss_pred cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC
Q 040607 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS 201 (629)
Q Consensus 122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (629)
+++|.++ .++ ++.+++|++|++++|.+++ + .+..+++|+.|++++|...+..
T Consensus 113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~-------------------- 164 (457)
T 3bz5_A 113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL-------------------- 164 (457)
T ss_dssp CCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--------------------
T ss_pred CCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--------------------
Confidence 9999888 453 7888899999999988874 3 3678888888888888532211
Q ss_pred CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCC
Q 040607 202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG 281 (629)
Q Consensus 202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 281 (629)
.+..+++|++|++++|++++ +| +..+++|+.|++++|.++++ .+..+++|+.|++++|++.+ .|+.
T Consensus 165 ------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip~~ 230 (457)
T 3bz5_A 165 ------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDVT 230 (457)
T ss_dssp ------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CCCT
T ss_pred ------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cCcc
Confidence 14456778888888888774 44 35677888888888888775 47778888999999998887 4588
Q ss_pred CCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCc
Q 040607 282 NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361 (629)
Q Consensus 282 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 361 (629)
.+++|+.|++++|.+++ +|. ..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.
T Consensus 231 ~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~ 290 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE 290 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred ccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence 88999999999998884 442 23778888888765 35667888888776665 467889999
Q ss_pred eeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCe
Q 040607 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSG 441 (629)
Q Consensus 362 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 441 (629)
|++++|...+.+|. ..+.++.+++++| ++|++|++++|++.+. + +.. +++|+.
T Consensus 291 L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~--------l~~L~~ 343 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH--------NTKLKS 343 (457)
T ss_dssp CCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT--------CTTCSE
T ss_pred EECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--ccc--------CCcCcE
Confidence 99999987766663 3456666655544 6889999999998774 2 444 789999
Q ss_pred eecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccC
Q 040607 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE 507 (629)
Q Consensus 442 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 507 (629)
|++++|++++ ++.|..|++++|.+.+. ..+..|+.+++++|++++.+|..+..
T Consensus 344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 9999998884 35677788999988875 24456778899999999888875543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-33 Score=288.78 Aligned_cols=328 Identities=17% Similarity=0.118 Sum_probs=162.2
Q ss_pred ccccEEEeccCCCCCcChh-hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEE
Q 040607 190 FQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD 268 (629)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 268 (629)
.+++.++++++....+|.. +..+++|++|++++|++.+..+.. +..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3555555554444444433 344555555555555554322223 24555555555555555555555555555555555
Q ss_pred ccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCc
Q 040607 269 VSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346 (629)
Q Consensus 269 L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 346 (629)
+++|.+....+ +..+++|++|++++|.+. .++...+..+++|++|++++|++++.. +..+++|+.|++++|.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 55555554333 345555555555555555 333333333555555555555554331 233455555555555444
Q ss_pred ccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC
Q 040607 347 GEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN 426 (629)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 426 (629)
+ +...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 2 12233455555555555422 211 124555555555555532 3455555555555555555555454444
Q ss_pred CCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcccc
Q 040607 427 PFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV 506 (629)
Q Consensus 427 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 506 (629)
. +++|+.|++++|.++ .+|..+..+++|++|++++|+++++ |..+..+++|++|++++|+++.. + +.
T Consensus 270 ~--------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 270 K--------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp T--------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred c--------cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--ch
Confidence 4 555555555555555 3344444555555555555555543 23344555555555555555532 2 34
Q ss_pred CCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 507 ELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 507 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
.+++|+.|++++|++.+.... ..+..+....+.+++..|
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHC 375 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCC
T ss_pred hhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCcee
Confidence 455555555555555543321 222333344444555544
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=277.88 Aligned_cols=304 Identities=20% Similarity=0.258 Sum_probs=176.1
Q ss_pred CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEe
Q 040607 211 HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLD 290 (629)
Q Consensus 211 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~ 290 (629)
.+++|++|+++++.+. .++. +..+++|++|++++|.++.+.+ +..+++|++|++++|.+.....+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 4455666666666554 2332 2455666666666665555443 555666666666666655544456666666666
Q ss_pred ccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607 291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS 370 (629)
Q Consensus 291 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 370 (629)
+++|.+. .++. +..+++|++|++++|......+ .+..+++|++|++++|.+....+ +..+++|+.|++++|.+.
T Consensus 117 l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 117 LNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 6666655 3333 3345666666666664333222 25566666666666666553322 556666666666666665
Q ss_pred CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC
Q 040607 371 GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT 450 (629)
Q Consensus 371 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 450 (629)
+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +.. +++|+.|++++|.++
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN--------LSQLTWLEIGTNQIS 256 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCC
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc--------CCCCCEEECCCCccC
Confidence 3322 5556666666666666654332 5566666666666666654333 322 566666666666665
Q ss_pred CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccc
Q 040607 451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA 530 (629)
Q Consensus 451 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 530 (629)
+ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..| +.
T Consensus 257 ~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 D-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp C-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred C-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 3 2 3456666666666666666654 245666666666666666666666666666666666666666665554 45
Q ss_pred cccccCCCCCCCCCC
Q 040607 531 QFATFNGSSYDGNPF 545 (629)
Q Consensus 531 ~~~~l~~l~~~~np~ 545 (629)
.+++++.+++++|+.
T Consensus 331 ~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 331 SLSKMDSADFANQVI 345 (347)
T ss_dssp GCTTCSEESSSCC--
T ss_pred hhhccceeehhhhcc
Confidence 666666666666654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-32 Score=279.76 Aligned_cols=308 Identities=20% Similarity=0.194 Sum_probs=177.2
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF 90 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 90 (629)
++++++|+++++.+....+..++.+ ..|++|++++|.+++..+.+++.+++|++|++++|.++ .+++..|.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHC------CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCCceEEEecCCchhhCChhHhccc------ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCC
Confidence 5667777777776654443334444 35667777777777666666777777777777777776 4554466777
Q ss_pred CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607 91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170 (629)
Q Consensus 91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 170 (629)
++|++|++++|+++.+++..|.++++|++|++++|.++ .+++..+.++++|++|++++|.+++ . .+..+++|+.|
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L 191 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHA 191 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEE
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCc-c---cccccccccee
Confidence 77777777777777666666677777777777777776 4544466777777777777776652 2 24556667777
Q ss_pred ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccc
Q 040607 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYL 250 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~ 250 (629)
++++|.+..... ..+|++|+++++....+|... .++|++|++++|++.+. .. +..+++|+.|++++|.+
T Consensus 192 ~l~~n~l~~~~~------~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 192 NVSYNLLSTLAI------PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp ECCSSCCSEEEC------CSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCC
T ss_pred ecccccccccCC------CCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcC
Confidence 777776644321 125555555554444443322 24555666665555532 22 24555555555555555
Q ss_pred cccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCccc
Q 040607 251 SGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK 329 (629)
Q Consensus 251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 329 (629)
++..+..+..+++|+.|++++|++..... +..+++|++|++++|.+. .+|..+.. +++|++|++++|+++... +
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~~---~ 335 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLK---L 335 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCCC---C
T ss_pred CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCccceeC---c
Confidence 55555555555555555555555554333 334455555555555554 44443332 455555555555554321 3
Q ss_pred CCCCCCcEEEccCCcCc
Q 040607 330 INLTNLWRLQLDGNHFI 346 (629)
Q Consensus 330 ~~l~~L~~L~l~~n~l~ 346 (629)
..+++|+.|++++|++.
T Consensus 336 ~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhhccCCEEEcCCCCcc
Confidence 34445555555555444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.9e-32 Score=275.83 Aligned_cols=307 Identities=19% Similarity=0.262 Sum_probs=248.2
Q ss_pred cCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCC
Q 040607 161 LYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240 (629)
Q Consensus 161 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 240 (629)
+..+++|+.|+++++.+. .++. +..+++|++|++++|++.+ ++. +..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-------------------------~~~~-~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L 90 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-------------------------SIQG-IEYLTNLEYLNLNGNQITD-ISP--LSNLVKL 90 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-------------------------CCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTC
T ss_pred chhcccccEEEEeCCccc-------------------------cchh-hhhcCCccEEEccCCcccc-chh--hhcCCcC
Confidence 345666777777776653 2332 6677888888888888874 443 4688888
Q ss_pred cEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcc
Q 040607 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320 (629)
Q Consensus 241 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 320 (629)
++|++++|.++.+. .+..+++|++|++++|.+....++..+++|+.|++++|.....++. +..+++|++|++++|.
T Consensus 91 ~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 91 TNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166 (347)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCC
Confidence 88888888887753 5788889999999999888777788899999999999966544444 4458899999999998
Q ss_pred cccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcc
Q 040607 321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME 400 (629)
Q Consensus 321 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 400 (629)
+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 876544 7788999999999998875433 8889999999999999886544 7888999999999999986544
Q ss_pred ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccccc
Q 040607 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480 (629)
Q Consensus 401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 480 (629)
+..+++|++|++++|.+.+. ..+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKD--------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTT--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhc--------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 88999999999999988764 33443 88999999999999853 46889999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 481 FSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 481 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
|.++++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999999997655 888999999999999986
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-33 Score=301.60 Aligned_cols=330 Identities=17% Similarity=0.119 Sum_probs=211.2
Q ss_pred cccccEEEeccCCCCCcChh-hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEE
Q 040607 189 KFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL 267 (629)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 267 (629)
+.+++.++++++....+|.. +..+++|+.|++++|.+.+..|..+ ..+++|+.|++++|.++.+++..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34666677776655555543 4566777777777777764444443 566777777777777777766667777777777
Q ss_pred EccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC
Q 040607 268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345 (629)
Q Consensus 268 ~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 345 (629)
++++|.+....+ +..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 777777665544 5667777777777777763 33333344677777777777766542 34456677777777766
Q ss_pred cccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCc
Q 040607 346 IGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF 425 (629)
Q Consensus 346 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 425 (629)
++ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 53 2334567777777777653222 22 25677777777777652 556677777777777777777666666
Q ss_pred CCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccc
Q 040607 426 NPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL 505 (629)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 505 (629)
.. +++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++++ |..+..+++|+.|++++|.+++. | +
T Consensus 275 ~~--------l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~--~ 341 (597)
T 3oja_B 275 VK--------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--L 341 (597)
T ss_dssp TT--------CSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--C
T ss_pred cC--------ccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C--h
Confidence 55 677777777777776 3455556677777777777777643 44456677777777777777643 2 4
Q ss_pred cCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCC
Q 040607 506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSS 548 (629)
Q Consensus 506 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~ 548 (629)
..+++|+.|++++|++.|.+.. ..+..+....+.+++..|.
T Consensus 342 ~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp CTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCC
T ss_pred hhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCC
Confidence 5566777777777777765432 2334444555666666664
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.4e-33 Score=278.29 Aligned_cols=253 Identities=28% Similarity=0.417 Sum_probs=228.3
Q ss_pred CCccEEeccCCCCCc--ccchhhhhCCCCCcEEEccC-cccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607 284 KSLSVLDLSKNRLIG--KIPERLAMGCFSLRYLVLSN-NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360 (629)
Q Consensus 284 ~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 360 (629)
.+++.|++++|.+.+ .+|..+.. +++|++|++++ |.+.+..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 568888888888887 67776654 88999999995 888888888888999999999999999888888899999999
Q ss_pred ceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCC-cccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607 361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN-FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439 (629)
Q Consensus 361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 439 (629)
+|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+..|..+.. +. |
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------LN-L 199 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------CC-C
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------Cc-c
Confidence 999999999888888899999999999999999888888899988 9999999999998888888876 55 9
Q ss_pred CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 519 (629)
+.|++++|.+++..|..+..+++|+.|+|++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 9999999999988899999999999999999999987665 888999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccccCCCCCCCCCCCCC
Q 040607 520 KLSGKTPDWVAQFATFNGSSYDGNPFLSS 548 (629)
Q Consensus 520 ~l~~~~~~~~~~~~~l~~l~~~~np~~c~ 548 (629)
++++.+|.. ..+++++.+++.+||+.|+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999986 8899999999999999885
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-31 Score=288.33 Aligned_cols=309 Identities=22% Similarity=0.225 Sum_probs=163.9
Q ss_pred CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607 11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF 90 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 90 (629)
++++++|++++|.++...+..++.+ ..|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+++..|.++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC------CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC------CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCC
Confidence 4566666666666654444444444 35666666666666666666666666666666666666 4444456666
Q ss_pred CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607 91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170 (629)
Q Consensus 91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 170 (629)
++|++|+|++|.++++++..|.++++|++|++++|.++ .+++..++++++|++|++++|.+++ . .+..+++|+.|
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L 197 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHA 197 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEE
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC-c---Chhhhhhhhhh
Confidence 66666666666666666655666666666666666666 4444456666666666666666652 2 24455666666
Q ss_pred ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccc
Q 040607 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYL 250 (629)
Q Consensus 171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~ 250 (629)
++++|.+..... ..+|+.|+++++....++..+ .++|+.|++++|.+++ +..+ ..+++|+.|++++|.+
T Consensus 198 ~l~~n~l~~l~~------~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l-~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 198 NVSYNLLSTLAI------PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWL-LNYPGLVEVDLSYNEL 266 (597)
T ss_dssp ECCSSCCSEEEC------CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGG-GGCTTCSEEECCSSCC
T ss_pred hcccCccccccC------CchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--Chhh-ccCCCCCEEECCCCcc
Confidence 666665543321 124455555544333333222 1344555555554442 1221 3444444444444444
Q ss_pred cccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccC
Q 040607 251 SGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI 330 (629)
Q Consensus 251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 330 (629)
.+..+..+ ..+++|+.|++++|.++ .+|.... .+++|++|++++|.+. .+|..+.
T Consensus 267 ~~~~~~~~----------------------~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 267 EKIMYHPF----------------------VKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp CEEESGGG----------------------TTCSSCCEEECTTSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCCCHHHh----------------------cCccCCCEEECCCCCCC-CCCcccc-cCCCCcEEECCCCCCC-ccCcccc
Confidence 44444444 44455555555555544 2333222 2445555555555554 2333344
Q ss_pred CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS 370 (629)
Q Consensus 331 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 370 (629)
.+++|+.|++++|.+++.. +..+++|+.|++++|++.
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 4555555555555554331 334455555555555544
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.4e-31 Score=266.79 Aligned_cols=285 Identities=20% Similarity=0.248 Sum_probs=157.4
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEec
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDL 291 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L 291 (629)
+++.++++++.+. .+|..+ .+.++.|++++|.++.+.+..|..+++|++|++++|.+....+ +..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4777777777776 556543 2567777777777777766677777777777777777765533 666777777777
Q ss_pred cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceecccccc
Q 040607 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHL 369 (629)
Q Consensus 292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l 369 (629)
++|.++ .+|..++ ++|++|++++|.+....+..|..+++|+.|++++|.++. ..+..+..+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777766 5665443 567777777777766555566667777777777776642 444555555 666666666665
Q ss_pred CCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607 370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449 (629)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 449 (629)
.+ +|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKL 253 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--------CTTCCEEECCSSCC
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--------CCCCCEEECCCCcC
Confidence 53 332222 44555555555555444444444455555555554444444433333 44444444444444
Q ss_pred CCCCccccccccccceEeccCccccccccccccCC------CCCCEEECcCCcCC--CCCCccccCCCCCCEEEcccC
Q 040607 450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL------KQTESLDLSYNKLT--GKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N 519 (629)
+ .+|..+..+++|++|++++|+++++++..|... ..|+.|++++|++. ...|..|..+++|+.+++++|
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 4 344444444444444444444444443333321 33444444444443 233334444444444444443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.8e-31 Score=264.04 Aligned_cols=286 Identities=19% Similarity=0.199 Sum_probs=178.8
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEec
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDL 291 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L 291 (629)
+++.++++++.+. .+|..+ .+.++.|++++|.++++.+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4667777776665 455433 2566777777777777666667777777777777777765543 666777777777
Q ss_pred cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceecccccc
Q 040607 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHL 369 (629)
Q Consensus 292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l 369 (629)
++|.++ .+|..++ ++|++|++++|.+.+..+..|..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 777766 5665443 567777777777776666667777777777777776643 4556667777777777777776
Q ss_pred CCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607 370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449 (629)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 449 (629)
.. +|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l 252 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------TPHLRELHLNNNKL 252 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------STTCCEEECCSSCC
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------CCCCCEEECCCCcC
Confidence 63 333322 56666666666666555566666666666666666665555545544 56666666666666
Q ss_pred CCCCccccccccccceEeccCccccccccccccCC------CCCCEEECcCCcCCC--CCCccccCCCCCCEEEcccC
Q 040607 450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL------KQTESLDLSYNKLTG--KIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N 519 (629)
+ .+|..+..+++|++|++++|+++++.+..|... +.++.|++++|.+.. ..|..|..+++++.+++++|
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 5 555556666666666666666666555555322 455666666665542 34455555566666666555
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.8e-30 Score=258.28 Aligned_cols=289 Identities=18% Similarity=0.233 Sum_probs=184.6
Q ss_pred cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607 42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121 (629)
Q Consensus 42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 121 (629)
+.+++++++++.++. +|..+. +++++|++++|.++ .+++..|.++++|++|++++|.++++.|..|.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 356788888887763 454443 57888888888887 66665788888888888888888888777888888888888
Q ss_pred cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC
Q 040607 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS 201 (629)
Q Consensus 122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (629)
+++|.++ .+|. .+. ++|++|++++|.++ .++...+..+++|+.|++++|.+....
T Consensus 107 Ls~n~l~-~l~~-~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------- 161 (330)
T 1xku_A 107 LSKNQLK-ELPE-KMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG-------------------- 161 (330)
T ss_dssp CCSSCCS-BCCS-SCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG--------------------
T ss_pred CCCCcCC-ccCh-hhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC--------------------
Confidence 8888887 7766 232 68888888888877 444456777888888888877764311
Q ss_pred CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--
Q 040607 202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-- 279 (629)
Q Consensus 202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-- 279 (629)
..+..+..+++|++|++++|++. .+|..+ .++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+
T Consensus 162 --~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 162 --IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp --BCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred --cChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 12345666777777777777776 344433 1566666666666666655566666666666666666654443
Q ss_pred CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCC------CCCcEEEccCCcCcc--cCch
Q 040607 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL------TNLWRLQLDGNHFIG--EIPE 351 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~--~~~~ 351 (629)
+..+++|++|++++|.+. .+|..+. .+++|++|++++|++++..+..|... +.++.+++++|.+.. ..|.
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence 455566666666666665 5555443 25666666666666665555444322 445555555555432 3344
Q ss_pred hhhccccCCceecccc
Q 040607 352 SLSNCNLFGGLYLSDN 367 (629)
Q Consensus 352 ~~~~l~~L~~L~l~~n 367 (629)
.|..++.++.+++++|
T Consensus 314 ~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGTTCCCGGGEEC---
T ss_pred ccccccceeEEEeccc
Confidence 4455555555555544
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-29 Score=256.06 Aligned_cols=286 Identities=16% Similarity=0.121 Sum_probs=234.2
Q ss_pred CCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEc
Q 040607 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVL 316 (629)
Q Consensus 239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 316 (629)
.++.++++++.++.++... .++++.|++++|.+....+ +..+++|++|++++|.+++..|. .+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 6889999999988765433 3689999999999987755 88999999999999999844344 4456899999999
Q ss_pred cCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC--CccccccCCCCCccccCCCCccc
Q 040607 317 SNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG--KIPRWLGNLSVSEDVIMPNNHLE 394 (629)
Q Consensus 317 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~ 394 (629)
++|.++.. |..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999854 43333 789999999999998777789999999999999999853 566777777 8999999999998
Q ss_pred CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccc
Q 040607 395 GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474 (629)
Q Consensus 395 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 474 (629)
+ +|..+. ++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT--------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 6 444433 78999999999998888787766 889999999999999777778999999999999999998
Q ss_pred ccccccccCCCCCCEEECcCCcCCCCCCccccCC------CCCCEEEcccCcCc--ccCCCccccccccCCCCCCCCC
Q 040607 475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL------NALAVFSVAHNKLS--GKTPDWVAQFATFNGSSYDGNP 544 (629)
Q Consensus 475 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~l~~~~np 544 (629)
. .|..+..+++|++|++++|++++..+..|... ++|+.|++++|++. +..|..+..+..++.+++++|.
T Consensus 255 ~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 R-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp B-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred e-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5 46668899999999999999997777777653 67899999999987 5667778888899999888874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.3e-31 Score=265.11 Aligned_cols=253 Identities=28% Similarity=0.441 Sum_probs=221.1
Q ss_pred CCccEEEccCCCCcc--ccc--CCCCCCccEEeccC-CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCc
Q 040607 262 RHLTYLDVSDNFFQV--HIP--VGNMKSLSVLDLSK-NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336 (629)
Q Consensus 262 ~~L~~L~L~~n~~~~--~~~--~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 336 (629)
.+++.|++++|.+.+ ..+ +..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467788888887775 333 77888888899884 8888778877654 89999999999999888888899999999
Q ss_pred EEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCC-CCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLS-VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415 (629)
Q Consensus 337 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 415 (629)
+|++++|.+++..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+.+..|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999888899999999999999999999888888888887 999999999999988898898887 999999999
Q ss_pred cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495 (629)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 495 (629)
.+.+..|..+.. +++|+.|++++|.+++..|. +..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 208 ~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 208 MLEGDASVLFGS--------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EEEECCGGGCCT--------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cccCcCCHHHhc--------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 998888888876 89999999999999865554 788999999999999999889999999999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
++++.+|.. ..+++|+.+++++|+..+..|
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999889886 789999999999999554433
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-33 Score=295.23 Aligned_cols=384 Identities=14% Similarity=0.053 Sum_probs=283.9
Q ss_pred CCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEE
Q 040607 140 KSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVN 219 (629)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 219 (629)
++|++|++++|.++.......+..+++|+.|++++|.+..... ..++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence 5678899988887633222336778888888888887643211 13566788889999999
Q ss_pred ccCCCCCCCCChhHHhcCC----CCcEEeccCcccccc----CCCCcccCCCccEEEccCCCCccccc-------CCCCC
Q 040607 220 LSHINLRGEFPNWLSENNT----KLQTLVQVNNYLSGI----FQMPKHARRHLTYLDVSDNFFQVHIP-------VGNMK 284 (629)
Q Consensus 220 L~~n~l~~~~~~~~~~~~~----~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~-------~~~~~ 284 (629)
+++|++.+..+..+...++ +|++|++++|.++.. .+..+..+++|++|++++|.+....+ ....+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 9999988656666666666 699999999998853 35677888999999999999875332 33467
Q ss_pred CccEEeccCCCCCcccchh---hhhCCCCCcEEEccCcccccccCcccC-----CCCCCcEEEccCCcCccc----Cchh
Q 040607 285 SLSVLDLSKNRLIGKIPER---LAMGCFSLRYLVLSNNKMKGHIFSKKI-----NLTNLWRLQLDGNHFIGE----IPES 352 (629)
Q Consensus 285 ~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~ 352 (629)
+|++|++++|.+++..... .+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 8999999999988543222 223478999999999998765544443 366999999999998864 4677
Q ss_pred hhccccCCceeccccccCCCc-----cccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCC
Q 040607 353 LSNCNLFGGLYLSDNHLSGKI-----PRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPS 423 (629)
Q Consensus 353 ~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~ 423 (629)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 888999999999999886432 23334689999999999998754 466677799999999999988543332
Q ss_pred CcCCCccccCCCccCCCeeecccccCCCC----CccccccccccceEeccCccccccccccccC-----CCCCCEEECcC
Q 040607 424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTFSN-----LKQTESLDLSY 494 (629)
Q Consensus 424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~ 494 (629)
.+... .....++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 303 ~l~~~---l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 303 LLCET---LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHH---HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHH---hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 22110 001136899999999999854 3556777899999999999998775554442 67999999999
Q ss_pred CcCCC----CCCccccCCCCCCEEEcccCcCcccCCCccc-----cccccCCCCCCCCCCC
Q 040607 495 NKLTG----KIPPQLVELNALAVFSVAHNKLSGKTPDWVA-----QFATFNGSSYDGNPFL 546 (629)
Q Consensus 495 N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~l~~l~~~~np~~ 546 (629)
|++++ .+|..+..+++|++|++++|++.......+. ...+++.+.+.++.+.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 99985 6788888899999999999999854221111 1234666666666553
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=265.19 Aligned_cols=251 Identities=19% Similarity=0.176 Sum_probs=165.4
Q ss_pred ccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCC
Q 040607 264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN 343 (629)
Q Consensus 264 L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 343 (629)
...++.++..++..+ ..-.++++.|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVP-DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCC-SCCCTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCC-CCCCCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 445666666655332 233456777777777776 444444455777777777777777666667777777777777777
Q ss_pred cCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCC-cccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607 344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN-HLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422 (629)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 422 (629)
.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.+... |
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence 777665566777777777777777776555556667777777777763 33333444566677777777777766533 2
Q ss_pred CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607 423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
. +.. +++|+.|++++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|++|+|++|+++...+
T Consensus 202 ~-~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 202 N-LTP--------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp C-CTT--------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred c-cCC--------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 2 222 6677777777777766666667777777777777777777666667777777777777777776666
Q ss_pred ccccCCCCCCEEEcccCcCcccCC
Q 040607 503 PQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 503 ~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
..|..+++|+.|++++|++.|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEECSST
T ss_pred hHhccccCCCEEEcCCCCccCCCC
Confidence 666667777777777777776665
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.9e-29 Score=265.14 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=170.2
Q ss_pred ccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCC
Q 040607 264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN 343 (629)
Q Consensus 264 L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 343 (629)
...++.++..++.. |..-.++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~i-P~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSC-CSCCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCcc-CCCCCCCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34566666665533 2233457777777777777 344444445777777777777777776677777777777777777
Q ss_pred cCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCC-cccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607 344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN-HLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422 (629)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 422 (629)
.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.+.+. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 777666666777777777777777777555556777777777777763 34433444567777777777777777543 2
Q ss_pred CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607 423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
. +.. +++|+.|++++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|++|++++|++++..+
T Consensus 213 ~-~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 213 N-LTP--------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp C-CTT--------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred c-ccc--------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 1 222 6677777777777776666777777777777777777777767777777777777777777776666
Q ss_pred ccccCCCCCCEEEcccCcCcccCC
Q 040607 503 PQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 503 ~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
..|..+++|+.|++++|++.|.+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTT
T ss_pred HHhccccCCCEEEccCCCcCCCCC
Confidence 666777777777777777776665
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.8e-32 Score=284.50 Aligned_cols=381 Identities=16% Similarity=0.117 Sum_probs=227.4
Q ss_pred CCCCcEEEcCCCCceeecchh-hhhcCccchhcccceeeccCcccCc----cchhhhcCCCCCCEEEccCCcCCCccCcc
Q 040607 11 LTNLENLTLDNSFFHVSLLQS-IAVFGPWMVQCFIGFRAMDGTALDK----NFLQVIKSMTSLKLLSLSNSRLNGTILDQ 85 (629)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~ 85 (629)
.++|++||++++.+++..... +..+ +.+++|++++|.+++ .++..+..+++|++|++++|.+.+..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~------~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLL------QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHH------TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhc------CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 357899999999987665443 4444 478999999999885 35777888999999999999987433332
Q ss_pred ccCCCC----CCcEEEccCCcCccC----CCcccCCCCCCCeeecccccCCcccCc----cccCCCCCCCEEEccCcccc
Q 040607 86 GLCEFV----HLQELHVDHNNLYGV----PPWCLGNMTSLQVLNISSNQLTGNISS----PPLKHLKSIQELKLSNNYFQ 153 (629)
Q Consensus 86 ~~~~l~----~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~i~~----~~l~~l~~L~~L~L~~n~l~ 153 (629)
.+..++ +|++|++++|+++.. .+..+.++++|++|++++|.+++..+. ......++|++|++++|.++
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 234455 799999999998753 366789999999999999988632211 11334678999999999887
Q ss_pred cccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhc-CCCCCCEEEccCCCCCCC-
Q 040607 154 IPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY-HQHDLKHVNLSHINLRGE- 228 (629)
Q Consensus 154 ~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~L~~n~l~~~- 228 (629)
.... ...+..+++|++|++++|.+....... +...+. ..++|++|++++|.+++.
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------------l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRV--------------------LCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH--------------------HHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH--------------------HHHHHhcCCCCceEEEccCCCCcHHH
Confidence 4211 234567789999999999875432110 111111 233555556655555532
Q ss_pred ---CChhHHhcCCCCcEEeccCccccccC-----CCCcccCCCccEEEccCCCCcccc----c--CCCCCCccEEeccCC
Q 040607 229 ---FPNWLSENNTKLQTLVQVNNYLSGIF-----QMPKHARRHLTYLDVSDNFFQVHI----P--VGNMKSLSVLDLSKN 294 (629)
Q Consensus 229 ---~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~~----~--~~~~~~L~~L~L~~n 294 (629)
++..+ ..+++|++|++++|.+.... +..+..+++|++|++++|.++... + +..+++|++|++++|
T Consensus 216 ~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 22222 34555666666555554321 111223455666666666555421 1 344566666666666
Q ss_pred CCCcccchhhh----hCCCCCcEEEccCcccccc----cCcccCCCCCCcEEEccCCcCcccCchhhhc-----cccCCc
Q 040607 295 RLIGKIPERLA----MGCFSLRYLVLSNNKMKGH----IFSKKINLTNLWRLQLDGNHFIGEIPESLSN-----CNLFGG 361 (629)
Q Consensus 295 ~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~ 361 (629)
.+.+..+..+. ...++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. .++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 65533222222 1224666666666666543 2333445566666666666665443333332 456666
Q ss_pred eeccccccCC----CccccccCCCCCccccCCCCcccCCCCcc----c-cCCCcccEEEcccCcCC
Q 040607 362 LYLSDNHLSG----KIPRWLGNLSVSEDVIMPNNHLEGPIPME----F-CQLNFLQILDISKKNIF 418 (629)
Q Consensus 362 L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~ 418 (629)
|++++|.+++ .++..+..+++|++|++++|.+++..... + ....+|+.|++.++...
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 6666666653 44555556666666666666654321111 1 12335666766666553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3e-29 Score=249.63 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=150.5
Q ss_pred cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc--CcccCCCCCCcEEEccC
Q 040607 265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI--FSKKINLTNLWRLQLDG 342 (629)
Q Consensus 265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~ 342 (629)
+.++.+++.++..+. .-.+++++|++++|.+. .+|...+..+++|++|++++|.++... +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 355666665553322 33356667777776666 566555555666777777666665322 34444566666666666
Q ss_pred CcCcccCchhhhccccCCceeccccccCCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-C
Q 040607 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-S 420 (629)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 420 (629)
|.+.. +|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 66653 44456666666666666666654433 355666666666666666665555566666666666666666544 3
Q ss_pred CCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500 (629)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 500 (629)
.|..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus 167 ~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 167 LPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp ECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred chhHHhh--------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 4444444 56666666666666655555666666666666666666665555566666666666666666666
Q ss_pred CCccccCCC-CCCEEEcccCcCcccCC
Q 040607 501 IPPQLVELN-ALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 501 ~~~~~~~l~-~L~~L~l~~N~l~~~~~ 526 (629)
.|..+..++ +|+.|++++|++.|.++
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CHHHHHhhhccCCEEEccCCCeecccC
Confidence 666666553 66666666666665543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.9e-29 Score=249.77 Aligned_cols=251 Identities=22% Similarity=0.214 Sum_probs=182.0
Q ss_pred cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc--CchhhhccccCCceec
Q 040607 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE--IPESLSNCNLFGGLYL 364 (629)
Q Consensus 287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l 364 (629)
+.++.+++.++ .+|..+ .+++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45677777776 666644 35777788888777765555677777788888877777633 2556667777888888
Q ss_pred cccccCCCccccccCCCCCccccCCCCcccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD 443 (629)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 443 (629)
++|.+. .+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.. +++|+.|+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~ 156 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLK 156 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--------CTTCCEEE
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--------CcCCCEEE
Confidence 877776 455567777778888888777775544 46777777888888877777666666655 67777888
Q ss_pred cccccCCC-CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 444 LSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 444 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
+++|.+++ ..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 88877764 45667777777888888888777777777777777888888888777666667777777888888888877
Q ss_pred ccCCCccccc-cccCCCCCCCCCCCCCCCC
Q 040607 523 GKTPDWVAQF-ATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 523 ~~~~~~~~~~-~~l~~l~~~~np~~c~~C~ 551 (629)
+..|..+..+ .+++.+++++||+.| +|+
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~-~c~ 265 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFAC-TCE 265 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEEC-SGG
T ss_pred ccCHHHHHhhhccCCEEEccCCCeec-ccC
Confidence 7777666666 477777788888777 554
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.2e-29 Score=253.77 Aligned_cols=278 Identities=18% Similarity=0.100 Sum_probs=160.9
Q ss_pred CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEE
Q 040607 237 NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL 314 (629)
Q Consensus 237 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 314 (629)
++.....+.+++.++.++.... ++|++|++++|.+....+ +..+++|+.|++++|.++ .++...+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEE
Confidence 3444456666666666544222 466777777776665444 566666777777666666 3333333346666666
Q ss_pred EccCcccccccCcccCCCCCCcEEEccCCcCcccCc-hhhhccccCCceeccccc-cCCCccccccCCCCCccccCCCCc
Q 040607 315 VLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPNNH 392 (629)
Q Consensus 315 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 392 (629)
++++|++++..+..|..+++|++|++++|.++...+ ..+..+++|++|++++|. +....+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 666666665544456666666666666666664333 356666666666666663 444444556666666666666666
Q ss_pred ccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc---cccccceEecc
Q 040607 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG---NLTRIHTLNVS 469 (629)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls 469 (629)
+.+..+..+..+++|++|++++|.+....+..+.. +++|+.|++++|.+++..+..+. ..+.++.++++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhh--------cccccEEECCCCccccccccccccccccchhhccccc
Confidence 66655666666666666666666653322222222 45666666666666543333221 23455566666
Q ss_pred Ccccccc----ccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 470 HNKLTGL----ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 470 ~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
++.+++. .|..+.++++|++|++++|+++...+..|..+++|++|++++|++.|.+|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6655542 34455666666666666666663333334666666666666666666555
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.6e-28 Score=240.20 Aligned_cols=248 Identities=18% Similarity=0.145 Sum_probs=188.7
Q ss_pred cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccc
Q 040607 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD 366 (629)
Q Consensus 287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (629)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666666 566543 45777777777777776666777777888888888877777677777778888888887
Q ss_pred cc-cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecc
Q 040607 367 NH-LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445 (629)
Q Consensus 367 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 445 (629)
|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|+++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~ 161 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------LGNLTHLFLH 161 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc--------CCCccEEECC
Confidence 76 66555677777888888888888887777777888888888888888887766666655 7888888888
Q ss_pred cccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccC
Q 040607 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKT 525 (629)
Q Consensus 446 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 525 (629)
+|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 88888655667888888999999999888888888888889999999999888766677888889999999999988776
Q ss_pred CCccccccccCCCCCCCCCCCC
Q 040607 526 PDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 526 ~~~~~~~~~l~~l~~~~np~~c 547 (629)
+.. ..+..++......+.+.|
T Consensus 242 ~~~-~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 242 RAR-PLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp GGH-HHHHHHHHCCSEECCCBE
T ss_pred CcH-HHHHHHHhcccccCcccc
Confidence 631 222334445556666644
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-30 Score=283.98 Aligned_cols=433 Identities=11% Similarity=0.020 Sum_probs=251.4
Q ss_pred cchhhhcCCCCCCEEEccCCcCC---CccCcc-----------ccCCCCCCcEEEccCCcCccCCCcccCC-CCC-CCee
Q 040607 57 NFLQVIKSMTSLKLLSLSNSRLN---GTILDQ-----------GLCEFVHLQELHVDHNNLYGVPPWCLGN-MTS-LQVL 120 (629)
Q Consensus 57 ~~~~~l~~l~~L~~L~Ls~n~l~---~~i~~~-----------~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L 120 (629)
..+..+..+++|++|+++++... +.+|.. .+..+++|++|+|++|.+++..+..+.. ++. |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34455667788888888775421 112210 1115677777777777665544444444 333 7777
Q ss_pred eccccc-CCc-ccCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEE
Q 040607 121 NISSNQ-LTG-NISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSI 195 (629)
Q Consensus 121 ~L~~n~-l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 195 (629)
++++|. ++. .++. ....+++|++|++++|.+++... ...+..+++|+.|++++|.+.....
T Consensus 144 ~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~------------- 209 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP------------- 209 (592)
T ss_dssp EEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-------------
T ss_pred ECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-------------
Confidence 777765 210 1111 23356777777777776652210 0123456677777777666532110
Q ss_pred EeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccc---ccCCCCcccCCCccEEEccCC
Q 040607 196 ILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLS---GIFQMPKHARRHLTYLDVSDN 272 (629)
Q Consensus 196 ~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~L~~n 272 (629)
..++..+..+++|++|++++|.+.+ ++.. +..+++|+.|.++..... ......+..+++|+.++++++
T Consensus 210 -------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 210 -------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280 (592)
T ss_dssp -------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC
T ss_pred -------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc
Confidence 1234555667788888888887763 5544 367788888888753222 122345566777888888775
Q ss_pred CCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccC---------
Q 040607 273 FFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDG--------- 342 (629)
Q Consensus 273 ~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~--------- 342 (629)
....... +..+++|++|++++|.+++.....+...+++|++|+++++-.....+..+..+++|++|++++
T Consensus 281 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 4333222 556778888888888766544444455678888888873322222233335677788888883
Q ss_pred --CcCcccC-chhhhccccCCceeccccccCCCccccccC-CCCCccccCC----CCcccCC-----CCccccCCCcccE
Q 040607 343 --NHFIGEI-PESLSNCNLFGGLYLSDNHLSGKIPRWLGN-LSVSEDVIMP----NNHLEGP-----IPMEFCQLNFLQI 409 (629)
Q Consensus 343 --n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~ 409 (629)
+.++... +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 3444332 223455788888888777776555555544 7777777775 4555543 2223556777888
Q ss_pred EEcccCc--CCCCCCCCcCCCccccCCCccCCCeeecccccCCC-CCccccccccccceEeccCccccccc-cccccCCC
Q 040607 410 LDISKKN--IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLK 485 (629)
Q Consensus 410 L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 485 (629)
|++++|. +.+..+..+. ..+++|+.|++++|++++ ..+..+.++++|++|++++|.+++.. +..+..++
T Consensus 441 L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp EEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred EEEecCCCCccHHHHHHHH-------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 8876533 3322222211 115677777777777764 23344566777888888877776442 33345677
Q ss_pred CCCEEECcCCcCCCCCCccc-cCCCCCCEEEcccC
Q 040607 486 QTESLDLSYNKLTGKIPPQL-VELNALAVFSVAHN 519 (629)
Q Consensus 486 ~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N 519 (629)
+|++|++++|+++......+ ..+|.++...+..+
T Consensus 514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 77788888777764433322 34566655555443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=249.55 Aligned_cols=251 Identities=22% Similarity=0.271 Sum_probs=200.8
Q ss_pred ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS 365 (629)
Q Consensus 286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (629)
...++.++..++ .+|..+. ++++.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777777777 7777553 578888888888888777888888888888888888887777888888888888888
Q ss_pred ccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeec
Q 040607 366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDL 444 (629)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L 444 (629)
+|.++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|+..+ ..+..+.. +++|+.|++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L 192 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------LSNLRYLNL 192 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CSSCCEEEC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------ccccCeecC
Confidence 888886666678888888888888888887777778888888888888854433 33345554 788888888
Q ss_pred ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607 445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
++|.++ .+| .+..+++|++|+|++|.++++.+..|.++++|++|++++|++++..+..|..+++|+.|++++|+++..
T Consensus 193 ~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp TTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 888887 444 467788888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCC
Q 040607 525 TPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 525 ~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
.+..+..+.+++.+++++|||.| +|.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~C-dC~ 296 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWNC-NCD 296 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEEC-SST
T ss_pred ChhHhccccCCCEEEcCCCCccC-CCC
Confidence 77777778888888888888888 554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.6e-27 Score=248.86 Aligned_cols=251 Identities=20% Similarity=0.230 Sum_probs=203.0
Q ss_pred ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS 365 (629)
Q Consensus 286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (629)
...++.++..++ .+|..+ .+++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777777777 677654 3578888888888888888888888888888888888888777888888888888888
Q ss_pred ccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeec
Q 040607 366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDL 444 (629)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L 444 (629)
+|.+....+..|..+++|+.|++++|.+....+..|..+++|++|++++|+..+ ..+..+.. +++|+.|++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L 203 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--------LFNLKYLNL 203 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CTTCCEEEC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC--------CCCCCEEEC
Confidence 888887666778888888888888888887777778888888888888854433 33344544 788888888
Q ss_pred ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607 445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
++|.+++ +| .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++.
T Consensus 204 ~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 204 GMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp TTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 8888873 34 477788888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCC
Q 040607 525 TPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 525 ~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
.+..+..+.+++.+++++|||.| +|.
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np~~C-dC~ 307 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNPWNC-DCD 307 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSCEEC-STT
T ss_pred ChHHhccccCCCEEEccCCCcCC-CCC
Confidence 77777788888888888888888 564
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=234.80 Aligned_cols=267 Identities=20% Similarity=0.202 Sum_probs=214.1
Q ss_pred cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCc
Q 040607 265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH 344 (629)
Q Consensus 265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 344 (629)
+.++.+++.+... |....+++++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~i-p~~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSC-CTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccC-CcCCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4566666666533 3344568888888888887 5565555568889999999998888878888888999999999997
Q ss_pred -CcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC
Q 040607 345 -FIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS 423 (629)
Q Consensus 345 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 423 (629)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766678888899999999999998877788888899999999999999877777789999999999999999877777
Q ss_pred CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCc
Q 040607 424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP 503 (629)
Q Consensus 424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 503 (629)
.+.. +++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..|..+++|++|++++|++....+.
T Consensus 172 ~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 172 AFRG--------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTT--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HhcC--------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 7766 89999999999999977788999999999999999999998888899999999999999999743332
Q ss_pred cccCCCCCCEEEcccCcCcccCCCcccc--ccccCCCCCCC
Q 040607 504 QLVELNALAVFSVAHNKLSGKTPDWVAQ--FATFNGSSYDG 542 (629)
Q Consensus 504 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~l~~~~ 542 (629)
. .-...++.+..+.+.+.|..|..+.. +..++..++.|
T Consensus 244 ~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 244 R-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp H-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred H-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence 1 11123455567888999988876544 34555555554
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.1e-30 Score=281.65 Aligned_cols=438 Identities=13% Similarity=0.047 Sum_probs=232.9
Q ss_pred ccCCCCCcEEEcCCCCce---eecchhhhhcCc------cchhcccceeeccCcccCccchhhhcC-CC-CCCEEEccCC
Q 040607 8 LHNLTNLENLTLDNSFFH---VSLLQSIAVFGP------WMVQCFIGFRAMDGTALDKNFLQVIKS-MT-SLKLLSLSNS 76 (629)
Q Consensus 8 l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~l~~-l~-~L~~L~Ls~n 76 (629)
+..+++|++|++++|... +.+|..+..+.. ..-...|++|+|++|.+++..+..+.. ++ +|++|+|++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 356888999999887421 111211110000 001146788888888888777766665 33 4888888887
Q ss_pred c-CCCccCccccCCCCCCcEEEccCCcCccCCCc----ccCCCCCCCeeecccccCC----cccCccccCCCCCCCEEEc
Q 040607 77 R-LNGTILDQGLCEFVHLQELHVDHNNLYGVPPW----CLGNMTSLQVLNISSNQLT----GNISSPPLKHLKSIQELKL 147 (629)
Q Consensus 77 ~-l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~----~~i~~~~l~~l~~L~~L~L 147 (629)
. ++..........+++|++|+|++|.+++.... .+.++++|++|++++|.++ +.++. .+.++++|++|++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L 227 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKV 227 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEEC
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEec
Confidence 6 22111111234678888888888887665432 3456788888888888876 12222 4567788888888
Q ss_pred cCcccccccCCcccCCCCCCcEEECCCCccee--ecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCC
Q 040607 148 SNNYFQIPISLGPLYNHSNLKIFDSENNQIYA--QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINL 225 (629)
Q Consensus 148 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l 225 (629)
++|.+.+ ++ ..+..+++|+.|+++...... ......+..+.+|+.+.+.......+|..+..+++|++|++++|.+
T Consensus 228 ~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 228 GDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred cCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 8887763 33 457778888888887532110 1111223344566666666555555566666666666666666665
Q ss_pred CCCCChhHHhcCCCCcEEeccCcccccc-CCCCcccCCCccEEEccCC---CCcccccCCCCCCccEEeccCCCCCcccc
Q 040607 226 RGEFPNWLSENNTKLQTLVQVNNYLSGI-FQMPKHARRHLTYLDVSDN---FFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301 (629)
Q Consensus 226 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 301 (629)
++.....+...+++|+.|++++ .+... .+.....+++|++|++++. ..... ..+.+++...
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~--------------~~~~~~~~~~ 370 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMED--------------EEGLVSQRGL 370 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS--------------TTCCCCHHHH
T ss_pred CHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCcccccccc--------------ccCccCHHHH
Confidence 4333323334556666665552 22211 1111223344444444410 00000 0123332222
Q ss_pred hhhhhCCCCCcEEEccCcccccccCcccCC-CCCCcEEEcc----CCcCccc-----CchhhhccccCCceeccccc--c
Q 040607 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKIN-LTNLWRLQLD----GNHFIGE-----IPESLSNCNLFGGLYLSDNH--L 369 (629)
Q Consensus 302 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l 369 (629)
..+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 222333555555555555555443333332 5555555554 3344432 22334556666666665322 3
Q ss_pred CCCccccc-cCCCCCccccCCCCcccCC-CCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeeccc
Q 040607 370 SGKIPRWL-GNLSVSEDVIMPNNHLEGP-IPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSC 446 (629)
Q Consensus 370 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~ 446 (629)
++..+..+ ..+++|+.|++++|.+++. .+..+..+++|++|++++|++++... ..... +++|+.|++++
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~ls~ 522 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK--------LPSLRYLWVQG 522 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH--------CSSCCEEEEES
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh--------cCccCeeECcC
Confidence 32222222 2356666666666665542 23344566777777777777543211 11122 67778888888
Q ss_pred ccCCCCCcccc-ccccccceEeccCc
Q 040607 447 NKLTGEIPLRI-GNLTRIHTLNVSHN 471 (629)
Q Consensus 447 n~l~~~~~~~~-~~l~~L~~L~Ls~n 471 (629)
|++++.....+ ..++.+....+..+
T Consensus 523 n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 523 YRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 87764433323 34566666555554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=247.66 Aligned_cols=280 Identities=18% Similarity=0.139 Sum_probs=222.7
Q ss_pred CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEe
Q 040607 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLD 290 (629)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~ 290 (629)
+.....+.+++.++ .+|..++ +++++|++++|.++.+.+..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 33455777778777 6676542 578888888888888887788888889999999888887655 78888999999
Q ss_pred ccCCCCCcccchhhhhCCCCCcEEEccCcccccccC-cccCCCCCCcEEEccCC-cCcccCchhhhccccCCceeccccc
Q 040607 291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF-SKKINLTNLWRLQLDGN-HFIGEIPESLSNCNLFGGLYLSDNH 368 (629)
Q Consensus 291 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 368 (629)
+++|.++ .++...+..+++|++|++++|+++...+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999888 6777766678899999999998886555 57888999999999988 4666667788889999999999999
Q ss_pred cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeeccccc
Q 040607 369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448 (629)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 448 (629)
+.+..|..+..+++|+.|++++|.+.......+..+++|++|++++|.+.+..+..+.. ......++.++++++.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-----GETNSLIKKFTFRNVK 260 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESCB
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-----ccccchhhcccccccc
Confidence 88777888888999999999999886544444556889999999999987766554432 1225667788888887
Q ss_pred CCC----CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607 449 LTG----EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502 (629)
Q Consensus 449 l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 502 (629)
+.+ .+|..+..+++|++|++++|+++.+++..|.++++|++|++++|++++..|
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 764 367788899999999999999998777778999999999999999986443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.9e-27 Score=234.59 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=140.6
Q ss_pred CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362 (629)
Q Consensus 283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 362 (629)
.++++.|++++|.+. .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 456777777777777 67776665 778888888888777 66677777888888888888777 567777788888888
Q ss_pred eccccccCCCccccccC---------CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607 363 YLSDNHLSGKIPRWLGN---------LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG 433 (629)
Q Consensus 363 ~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 433 (629)
++++|.+.+.+|..+.. +++|+.|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------ 227 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------ 227 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc------
Confidence 88887776666665443 555555555555555 444455555555555555555543 2223333
Q ss_pred CCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607 434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV 513 (629)
Q Consensus 434 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 513 (629)
+++|+.|++++|.+.+.+|..+..+++|++|+|++|++.+..|..+.++++|++|++++|++.+.+|+.+..+++|+.
T Consensus 228 --l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 228 --LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp --CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred --CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred EEcccCcC
Q 040607 514 FSVAHNKL 521 (629)
Q Consensus 514 L~l~~N~l 521 (629)
+++..|.+
T Consensus 306 l~l~~~~~ 313 (328)
T 4fcg_A 306 ILVPPHLQ 313 (328)
T ss_dssp EECCGGGS
T ss_pred EeCCHHHH
Confidence 55554443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.2e-27 Score=233.96 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=206.8
Q ss_pred CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607 308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI 387 (629)
Q Consensus 308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 387 (629)
.+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 578999999999998 56777888999999999999999 78889999999999999999999 7788999999999999
Q ss_pred CCCCcccCCCCccccC---------CCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc
Q 040607 388 MPNNHLEGPIPMEFCQ---------LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG 458 (629)
Q Consensus 388 l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 458 (629)
+++|.+.+.+|..+.. +++|++|++++|.+. .+|..+.. +++|+.|++++|.++ .+|..+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~--------l~~L~~L~L~~N~l~-~l~~~l~ 226 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN--------LQNLKSLKIRNSPLS-ALGPAIH 226 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------CTTCCEEEEESSCCC-CCCGGGG
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------CCCCCEEEccCCCCC-cCchhhc
Confidence 9999888888877654 999999999999997 66777766 899999999999999 5666899
Q ss_pred cccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCC
Q 040607 459 NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGS 538 (629)
Q Consensus 459 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l 538 (629)
.+++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++..++++..+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCC
Q 040607 539 SYDGNPF 545 (629)
Q Consensus 539 ~~~~np~ 545 (629)
.+..+..
T Consensus 307 ~l~~~~~ 313 (328)
T 4fcg_A 307 LVPPHLQ 313 (328)
T ss_dssp ECCGGGS
T ss_pred eCCHHHH
Confidence 8876654
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2e-25 Score=240.24 Aligned_cols=268 Identities=23% Similarity=0.247 Sum_probs=209.9
Q ss_pred CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~ 293 (629)
+++.|++++|.++ .+|..++ ++|+.|++++|.++.++. .+++|++|++++|+++.... .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 5788888888887 6666542 678888888888876554 46788888888888775444 678888888888
Q ss_pred CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373 (629)
Q Consensus 294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (629)
|.+. .+|. .+++|++|++++|+++.. |. .+++|++|++++|.+++. |. .+++|+.|++++|.++. +
T Consensus 111 N~l~-~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 111 NPLT-HLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCC-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred CcCC-CCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 8887 5665 367888999999888853 33 247889999999988753 33 34678889999998885 4
Q ss_pred cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607 374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI 453 (629)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 453 (629)
| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+... |.. +++|+.|++++|.+++ +
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~~-----------~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PAL-----------PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CCC-----------CTTCCEEECCSSCCSC-C
T ss_pred c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CCC-----------CCCCCEEEccCCccCc-C
Confidence 4 446889999999999885 333 247899999999988653 321 5789999999999984 5
Q ss_pred ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccccc
Q 040607 454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA 533 (629)
Q Consensus 454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 533 (629)
| ..+++|+.|+|++|.++++++ .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 5 456899999999999997654 5789999999999999 7788999999999999999999988887665554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=235.88 Aligned_cols=256 Identities=19% Similarity=0.143 Sum_probs=194.2
Q ss_pred ccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEcc
Q 040607 264 LTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLD 341 (629)
Q Consensus 264 L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 341 (629)
++..+++.+.+..... +..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 3344555555543332 455677888888888887 4444444558888888888888876554 7788888888888
Q ss_pred CCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCC
Q 040607 342 GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421 (629)
Q Consensus 342 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 421 (629)
+|.+++.. ..++|++|++++|.+.+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 88876432 3478888888888887554433 577888999999888777778888899999999999887766
Q ss_pred CCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCC
Q 040607 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501 (629)
Q Consensus 422 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 501 (629)
+..+.. .+++|+.|++++|.+++. +. ...+++|++|+|++|.++++++. |..+++|++|++++|+++ .+
T Consensus 161 ~~~~~~-------~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 161 FAELAA-------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp GGGGGG-------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EE
T ss_pred HHHHhh-------ccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-ch
Confidence 665531 168899999999998844 32 33589999999999999876554 888999999999999998 56
Q ss_pred CccccCCCCCCEEEcccCcCc-ccCCCccccccccCCCCCC
Q 040607 502 PPQLVELNALAVFSVAHNKLS-GKTPDWVAQFATFNGSSYD 541 (629)
Q Consensus 502 ~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~~~ 541 (629)
|..+..+++|+.|++++|++. +..|.++..+++++.+++.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 778888999999999999998 5566777777777777776
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=8.1e-27 Score=246.32 Aligned_cols=247 Identities=19% Similarity=0.134 Sum_probs=204.1
Q ss_pred CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607 281 GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360 (629)
Q Consensus 281 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 360 (629)
..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 345689999999999884 444444568999999999999887665 888999999999999887543 337899
Q ss_pred ceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC-CCccccCCCccCC
Q 040607 361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN-PFSIKQGKPLNSM 439 (629)
Q Consensus 361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~~~~~~L 439 (629)
.|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+. . +++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~--------l~~L 171 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS--------SDTL 171 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG--------TTTC
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh--------CCcc
Confidence 999999998866554 357899999999999988888899999999999999999887777664 3 7899
Q ss_pred CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 519 (629)
+.|+|++|.+++. + ....+++|+.|+|++|.++++++. |..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 9999999999854 3 234689999999999999987665 8899999999999999994 6778899999999999999
Q ss_pred cCc-ccCCCccccccccCCCCCC-------CCCCCCCCCC
Q 040607 520 KLS-GKTPDWVAQFATFNGSSYD-------GNPFLSSSCN 551 (629)
Q Consensus 520 ~l~-~~~~~~~~~~~~l~~l~~~-------~np~~c~~C~ 551 (629)
++. +..|.++..++.+..+++. ++|+.| .|.
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c-~~~ 286 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC-TVP 286 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCC-SST
T ss_pred CCcCcchHHHHHhCCCCcEEeccccccccCCCcccc-cCC
Confidence 998 4555667777777777765 889988 664
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=234.37 Aligned_cols=263 Identities=21% Similarity=0.235 Sum_probs=133.1
Q ss_pred cceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607 44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123 (629)
Q Consensus 44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 123 (629)
+++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|+++++++ .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 556666666666 4454443 56677777776666 5554 34566777777776665544 45666777777
Q ss_pred cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV 203 (629)
Q Consensus 124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (629)
+|.++ .+|. .+++|++|++++|.++ .++. .+++|++|++++|.+..... ...+|+.|+++++...
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCS
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCC
Confidence 76666 4543 4466667777666665 2332 23666666666666543211 1123333333333333
Q ss_pred CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCC
Q 040607 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNM 283 (629)
Q Consensus 204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 283 (629)
.+| ..+++|+.|++++|+++ .+|. ..++|+.|++++|.++.++. .+
T Consensus 175 ~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~--------------------------~~ 220 (622)
T 3g06_A 175 SLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPA--------------------------LP 220 (622)
T ss_dssp CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCC--------------------------CC
T ss_pred CCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccCC--------------------------CC
Confidence 333 22344555555555544 2221 12444444444444443321 12
Q ss_pred CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607 284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363 (629)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 363 (629)
++|+.|++++|.++ .+| ..+++|++|++++|.++.. |. .+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 44555555555544 233 1234555555555555422 22 3344555555555554 3344455555555555
Q ss_pred ccccccCCCccccc
Q 040607 364 LSDNHLSGKIPRWL 377 (629)
Q Consensus 364 l~~n~l~~~~~~~~ 377 (629)
+++|.+++..|..+
T Consensus 291 L~~N~l~~~~~~~l 304 (622)
T 3g06_A 291 LEGNPLSERTLQAL 304 (622)
T ss_dssp CCSCCCCHHHHHHH
T ss_pred ecCCCCCCcCHHHH
Confidence 55555544444333
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-25 Score=218.63 Aligned_cols=226 Identities=20% Similarity=0.216 Sum_probs=170.5
Q ss_pred EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccc
Q 040607 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH 368 (629)
Q Consensus 289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 368 (629)
.+..+..+. .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 555543 2467777777777776666677777777777777777776666677777777777777777
Q ss_pred cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC-CCCCcCCCccccCCCccCCCeeecccc
Q 040607 369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS-LPSCFNPFSIKQGKPLNSMSGLDLSCN 447 (629)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~n 447 (629)
+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+.. +++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~--------l~~L~~L~Ls~N 159 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--------LTNLEHLDLSSN 159 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG--------CTTCCEEECCSS
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc--------CCCCCEEECCCC
Confidence 7766666777777777777777777766666677888888888888888664 4666665 788888888888
Q ss_pred cCCCCCccccccccccc----eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607 448 KLTGEIPLRIGNLTRIH----TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG 523 (629)
Q Consensus 448 ~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 523 (629)
.+++..+..+..+++|+ .|++++|.++++++..+.. .+|++|++++|++++..+..|..+++|+.|++++|++.|
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88866667777777777 8899999998877766654 479999999999987777777888999999999999998
Q ss_pred cCCC
Q 040607 524 KTPD 527 (629)
Q Consensus 524 ~~~~ 527 (629)
.++.
T Consensus 239 ~c~~ 242 (276)
T 2z62_A 239 SCPR 242 (276)
T ss_dssp CTTT
T ss_pred cCCc
Confidence 8873
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4e-25 Score=215.23 Aligned_cols=207 Identities=21% Similarity=0.225 Sum_probs=142.9
Q ss_pred CCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccC
Q 040607 309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIM 388 (629)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 388 (629)
...+.++++++.++. +|..+. ++++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 356788888888874 444332 56888888888887666667777888888888888777555555667777777777
Q ss_pred CCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEec
Q 040607 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468 (629)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 468 (629)
++|.+.+..+..|..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..|..+++|++|++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------CcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 777777666666677777777777777776666655544 667777777777766555555666677777777
Q ss_pred cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 469 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
++|.++++++..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7777766666666666777777777777765555556666677777777777666654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.2e-27 Score=232.69 Aligned_cols=210 Identities=18% Similarity=0.113 Sum_probs=133.7
Q ss_pred ccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCccc-Cccchhhhc-------CCCCCCEEEccCCcCC
Q 040607 8 LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTAL-DKNFLQVIK-------SMTSLKLLSLSNSRLN 79 (629)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~ 79 (629)
++..++|++|++++|.+ .+|..+. ..+++|++++|.+ ...+|..+. ++++|++|+|++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~--------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFT--------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHH--------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EccCCCceeEeeccccc--ccHHHHH--------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 35567788888888877 5555432 3477888888888 345666555 7888888888888887
Q ss_pred CccCcccc-CCCCCCcEEEccCCcCccCCCcccCCC-----CCCCeeecccccCCcccCccccCCCCCCCEEEccCcccc
Q 040607 80 GTILDQGL-CEFVHLQELHVDHNNLYGVPPWCLGNM-----TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ 153 (629)
Q Consensus 80 ~~i~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 153 (629)
+.+|...| ..+++|++|++++|+++++ |..+.++ ++|++|++++|.++ .++...++++++|++|++++|.+.
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTC
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcC
Confidence 66776332 7788888888888888877 5566655 78888888888887 555457888888888888888765
Q ss_pred cccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcC-hhhcCCCCCCEEEccCCCCCCCC
Q 040607 154 IPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP-KFLYHQHDLKHVNLSHINLRGEF 229 (629)
Q Consensus 154 ~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~L~~n~l~~~~ 229 (629)
+..+ ...+..+++|++|++++|.+..... ++ ..+..+++|++|++++|++.+..
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSG----------------------VCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----------------------HHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHH----------------------HHHHHHhcCCCCCEEECCCCcCCccc
Confidence 3211 1123566666666666666532111 11 22334556666666666665444
Q ss_pred ChhHHhcCCCCcEEeccCcccc
Q 040607 230 PNWLSENNTKLQTLVQVNNYLS 251 (629)
Q Consensus 230 ~~~~~~~~~~L~~L~l~~n~~~ 251 (629)
|...+..+++|+.|++++|.++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS
T ss_pred chhhhhhcCCCCEEECCCCccC
Confidence 3222233444555555555444
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.7e-25 Score=218.82 Aligned_cols=226 Identities=20% Similarity=0.165 Sum_probs=197.1
Q ss_pred EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCc
Q 040607 313 YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392 (629)
Q Consensus 313 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 392 (629)
..+..+..+.. +|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 45556666653 444442 579999999999998888899999999999999999997777789999999999999999
Q ss_pred ccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC-CccccccccccceEeccCc
Q 040607 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE-IPLRIGNLTRIHTLNVSHN 471 (629)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n 471 (629)
+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++. +|..+..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 99888889999999999999999998877767766 89999999999999863 5889999999999999999
Q ss_pred cccccccccccCCCCCC----EEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 472 KLTGLILSTFSNLKQTE----SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 472 ~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
++++..+..|..+++|+ +|++++|.+++..+..+.. .+|+.|++++|++++..+..+..+++++.+++++||+.|
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99998888888777777 9999999999766665544 589999999999998877778889999999999999999
Q ss_pred CCCC
Q 040607 548 SSCN 551 (629)
Q Consensus 548 ~~C~ 551 (629)
+|+
T Consensus 239 -~c~ 241 (276)
T 2z62_A 239 -SCP 241 (276)
T ss_dssp -CTT
T ss_pred -cCC
Confidence 775
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.3e-29 Score=270.93 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=62.2
Q ss_pred hhhcCCCCCCEEEccCCcCCCccC---c-----------cccCCCCCCcEEEccCCcCccCCCcccC-CCCCCCeeeccc
Q 040607 60 QVIKSMTSLKLLSLSNSRLNGTIL---D-----------QGLCEFVHLQELHVDHNNLYGVPPWCLG-NMTSLQVLNISS 124 (629)
Q Consensus 60 ~~l~~l~~L~~L~Ls~n~l~~~i~---~-----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~ 124 (629)
..+..+++|++|+++++....++. . ..+..+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345567777777777765221111 0 0123456677777777766554444443 466777777776
Q ss_pred c-cCCcc-cCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCc
Q 040607 125 N-QLTGN-ISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQ 176 (629)
Q Consensus 125 n-~l~~~-i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~ 176 (629)
| .+++. ++. .+.++++|++|++++|.+++... ......+++|+.|++++|.
T Consensus 140 ~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 140 CEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred cCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 6 33311 222 33456777777777776552111 0112255566666666664
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.6e-27 Score=237.44 Aligned_cols=247 Identities=20% Similarity=0.186 Sum_probs=128.1
Q ss_pred cCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCC-cccchhhh------hCCCCCcEEEccCcccccccCccc--C
Q 040607 260 ARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLI-GKIPERLA------MGCFSLRYLVLSNNKMKGHIFSKK--I 330 (629)
Q Consensus 260 ~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~~~~--~ 330 (629)
..++|+.+++++|.+ ..|..-...|+.|++++|.+. ..++.... ..+++|++|++++|++++..|..+ .
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 345566677777766 222111112667777777663 23444332 136677777777777766666554 6
Q ss_pred CCCCCcEEEccCCcCcccCchhhhcc-----ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC--CCccc--
Q 040607 331 NLTNLWRLQLDGNHFIGEIPESLSNC-----NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP--IPMEF-- 401 (629)
Q Consensus 331 ~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-- 401 (629)
.+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 667777777777777655 5556555 6666666666666655555566666666666666654432 11112
Q ss_pred cCCCcccEEEcccCcCCCCC--C-CCcCCCccccCCCccCCCeeecccccCCCCCc-cccccccccceEeccCccccccc
Q 040607 402 CQLNFLQILDISKKNIFGSL--P-SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLI 477 (629)
Q Consensus 402 ~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~ 477 (629)
..+++|++|++++|.+.+.. + ..+.. +++|+.|++++|.+++..| ..+..+++|++|+|++|.++.+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i- 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAA--------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV- 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHT--------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhc--------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-
Confidence 45555555555555553210 0 11111 3455555555555543332 2333345555555555555432
Q ss_pred cccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 478 LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 22222 4455555555555433 33 444555555555555544
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=230.23 Aligned_cols=240 Identities=17% Similarity=0.111 Sum_probs=205.8
Q ss_pred CccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceec
Q 040607 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL 364 (629)
Q Consensus 285 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 364 (629)
+++..+++.+.+. ..+..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4566788888776 5666677778899999999999998888899999999999999999986654 889999999999
Q ss_pred cccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeec
Q 040607 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL 444 (629)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 444 (629)
++|.+.+.. ..++|+.|++++|.+.+..+. .+++|++|++++|.+.+..+..+.. +++|+.|++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L~L 151 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC--------RSRVQYLDL 151 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG--------GSSEEEEEC
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc--------cCCCCEEEC
Confidence 999987432 348999999999999876543 3688999999999998887777766 899999999
Q ss_pred ccccCCCCCcccc-ccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607 445 SCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG 523 (629)
Q Consensus 445 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 523 (629)
++|.+++..+..+ ..+++|++|+|++|.+++... ...+++|++|++++|++++. |..+..+++|+.|++++|+++.
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc
Confidence 9999997666666 478999999999999998743 34589999999999999954 5568999999999999999995
Q ss_pred cCCCccccccccCCCCCCCCCCCC
Q 040607 524 KTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 524 ~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
+|..+..+++++.+++++|++.|
T Consensus 229 -l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 229 -IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp -ECTTCCCCTTCCEEECTTCCCBH
T ss_pred -hhhHhhcCCCCCEEEccCCCccC
Confidence 46667889999999999999987
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.3e-24 Score=208.82 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=158.6
Q ss_pred CCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcc
Q 040607 334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDIS 413 (629)
Q Consensus 334 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 413 (629)
..+.++++++.++. +|..+. ++++.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46778888887774 444332 567888888888876666678888888888888888876666667778888888888
Q ss_pred cCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECc
Q 040607 414 KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493 (629)
Q Consensus 414 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 493 (629)
+|.+.+..+..+.. +++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|+++
T Consensus 94 ~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 94 DNKLQALPIGVFDQ--------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp SSCCCCCCTTTTTT--------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCcCCHhHccc--------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 88887766666655 7788888888888876666777788888888888888887777777888888888888
Q ss_pred CCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 494 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++++|||.| +|.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~c~ 222 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC-TCN 222 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-SSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC-CCc
Confidence 888887666677778888888888888887666667777788888888888887 664
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.8e-28 Score=263.24 Aligned_cols=435 Identities=16% Similarity=0.134 Sum_probs=226.4
Q ss_pred ccCCCCCcEEEcCCCCceeec---c--------hhhhhcCccchhcccceeeccCcccCccchhhhc-CCCCCCEEEccC
Q 040607 8 LHNLTNLENLTLDNSFFHVSL---L--------QSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSN 75 (629)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~~---~--------~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~ 75 (629)
+..+++|++|++++|...... | ..+..+. .....|++|++++|.+++..+..+. .+++|++|+|++
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~--~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS--SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH--HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH--HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 456789999999998532111 1 0111110 0113678889998888877777775 688899999988
Q ss_pred C-cCCCccCccccCCCCCCcEEEccCCcCccCCCccc----CCCCCCCeeecccccCCcccCccc----cCCCCCCCEEE
Q 040607 76 S-RLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCL----GNMTSLQVLNISSNQLTGNISSPP----LKHLKSIQELK 146 (629)
Q Consensus 76 n-~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~i~~~~----l~~l~~L~~L~ 146 (629)
| .+++......+.++++|++|++++|.+++..+..+ ..+++|++|++++|. . .+.... ...+++|++|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEe
Confidence 8 44421122234578889999998888766554433 367788888888886 1 222212 34468888888
Q ss_pred ccCcc-cccccCCcccCCCCCCcEEECCCCcc-------eeecCCCCcCCcccccEE-EeccCCCCCcChhhcCCCCCCE
Q 040607 147 LSNNY-FQIPISLGPLYNHSNLKIFDSENNQI-------YAQTESHSLTPKFQLNSI-ILSHGSGVTFPKFLYHQHDLKH 217 (629)
Q Consensus 147 L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~l~~~~~L~~ 217 (629)
+++|. +. .++ ..+..+++|+.|+++.+.. ..... .+..+.+|+.+ .+.......++..+..+++|++
T Consensus 218 L~~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 218 LNRAVPLE-KLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CCTTSCHH-HHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHH--HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred cCCCCcHH-HHH-HHHhcCCcceEcccccccCccchhhHHHHHH--HHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 88873 33 222 3466778888888765431 11110 12333445544 2222222334444444555555
Q ss_pred EEccCCCCCCCCChhHHhcCCCCcEEeccCccccccC-CCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCC
Q 040607 218 VNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIF-QMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRL 296 (629)
Q Consensus 218 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l 296 (629)
|++++|.+++.....+...+++|+.|++++| +.... ......+++|++|++.++.-.+ ....+.+
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g-------------~~~~~~l 359 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV-------------MEPNVAL 359 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC-------------SSCSSCC
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc-------------cccCCCC
Confidence 5555555443222222334455555555544 22110 0011123444444442210000 0022233
Q ss_pred CcccchhhhhCCCCCcEEEccCcccccccCcccC-CCCCCcEEEcc--C----CcCccc-----CchhhhccccCCceec
Q 040607 297 IGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI-NLTNLWRLQLD--G----NHFIGE-----IPESLSNCNLFGGLYL 364 (629)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l 364 (629)
++.....+..++++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 3222222333355666665555555544333332 35566666665 2 233311 1122455666666666
Q ss_pred cccccCCCccccccC-CCCCccccCCCCcccCCCCccc-cCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCee
Q 040607 365 SDNHLSGKIPRWLGN-LSVSEDVIMPNNHLEGPIPMEF-CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442 (629)
Q Consensus 365 ~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 442 (629)
++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|++++.....+. ..+++|+.|
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-------~~l~~L~~L 511 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-------SKLETMRSL 511 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-------GGGGGSSEE
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-------HhCCCCCEE
Confidence 55 333333333333 5667777777766644322222 4577888888888877432222111 126788888
Q ss_pred ecccccCCCCCcccc-ccccccceEeccCcc
Q 040607 443 DLSCNKLTGEIPLRI-GNLTRIHTLNVSHNK 472 (629)
Q Consensus 443 ~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~ 472 (629)
++++|+++......+ ..+++++...+..+.
T Consensus 512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred eeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 888887743222223 345666665555543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.7e-25 Score=214.27 Aligned_cols=205 Identities=19% Similarity=0.156 Sum_probs=153.6
Q ss_pred CCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccc
Q 040607 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386 (629)
Q Consensus 307 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (629)
.++++++++++++.++.. |..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+ ...+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 477889999999888854 43332 678899999998887778888888889999998888874333 2667788888
Q ss_pred cCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceE
Q 040607 387 IMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL 466 (629)
Q Consensus 387 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 466 (629)
++++|.+. .+|..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++..+..|..+++|+.|
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------CCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 88888777 45666777777888888887777766666655 6777777777777776666667777777777
Q ss_pred eccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 467 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
+|++|+++++++..|.++++|+.|++++|+++ .+|..+...++|+.+++++|++.|.+.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 77777777776666777777777777777777 556666666777777777777776553
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.6e-26 Score=239.36 Aligned_cols=244 Identities=18% Similarity=0.157 Sum_probs=159.6
Q ss_pred CCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccC
Q 040607 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318 (629)
Q Consensus 239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 318 (629)
+|+.|++++|.++...+..|..+++|+.|++++|.+.+..++..+++|+.|++++|.++ .++. .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCCC-----CCCcCEEECcC
Confidence 67777777777776666666666666666666666665555666666666666666655 3332 24566666666
Q ss_pred cccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCC
Q 040607 319 NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398 (629)
Q Consensus 319 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 398 (629)
|.+++..+. .+++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------RSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------------GSSEEEEECTTSCCCEEEG
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------------CCCCCEEECCCCCCCCcCh
Confidence 655544332 2344555555555555444444444 4455555555555544444
Q ss_pred cccc-CCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccc
Q 040607 399 MEFC-QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI 477 (629)
Q Consensus 399 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 477 (629)
..+. .+++|++|++++|.+.+..+... +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++++
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~l- 229 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI- 229 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEE-
T ss_pred HHHhhhCCcccEEecCCCcccccccccc----------CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCccc-
Confidence 4443 56677777777777765533221 6788888888888885 444588889999999999999874
Q ss_pred cccccCCCCCCEEECcCCcCC-CCCCccccCCCCCCEEEcc-------cCcCcccCCC
Q 040607 478 LSTFSNLKQTESLDLSYNKLT-GKIPPQLVELNALAVFSVA-------HNKLSGKTPD 527 (629)
Q Consensus 478 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~ 527 (629)
|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++ .|+..|.++.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 556888899999999999987 5667778888888888886 5666555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.5e-23 Score=205.76 Aligned_cols=207 Identities=23% Similarity=0.210 Sum_probs=145.1
Q ss_pred cCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCccc
Q 040607 329 KINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408 (629)
Q Consensus 329 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 408 (629)
+..+++++.++++++.++. +|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4456777777777777763 343332 5677777777777766666777777777777777777654332 5677777
Q ss_pred EEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCC
Q 040607 409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTE 488 (629)
Q Consensus 409 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 488 (629)
+|++++|.+. .+|..+.. +++|+.|++++|++++..+..|..+++|++|+|++|+++++++..|..+++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~--------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQT--------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp EEECCSSCCS-SCCCCTTT--------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCcCC-cCchhhcc--------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 7777777775 34444444 67777777777777766666777777777777777777777777777777777
Q ss_pred EEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 489 SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 489 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
.|++++|+++...+..|..+++|+.|++++|+++ .+|..+....+++.+++++|||.| +|.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C-~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC-NCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC-SGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC-cCc
Confidence 7777777777665556677777777777777777 445445556677777777777777 564
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-23 Score=204.80 Aligned_cols=206 Identities=21% Similarity=0.230 Sum_probs=151.4
Q ss_pred CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607 308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI 387 (629)
Q Consensus 308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 387 (629)
+++|+.|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45666666666665532 2355566666677766666542 3566666777777777777666666666777777777
Q ss_pred CCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607 388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467 (629)
Q Consensus 388 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 467 (629)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++|++|+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 7777777666666777888888888888887766666655 78888888888888866666778888899999
Q ss_pred ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF 532 (629)
Q Consensus 468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 532 (629)
+++|++++.++..|..+++|+.|++++|.+.+. +++|+.+++++|.+++.+|.+++.+
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 999988888887788888999999999887743 4568888888899988888766554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.3e-23 Score=202.95 Aligned_cols=210 Identities=20% Similarity=0.183 Sum_probs=129.5
Q ss_pred CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359 (629)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 359 (629)
...+++|+.|++++|.+. .++. + ..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~~-l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQG-I-QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcc-cccc-c-ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344455555555555544 2322 1 1255555555555555532 245555566666666666655555555566666
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 439 (629)
++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+.. +++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L 183 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------LTQL 183 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------CccC
Confidence 66666666665555555566666666666666666555555666777777777777776666655544 6777
Q ss_pred CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC
Q 040607 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN 509 (629)
Q Consensus 440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 509 (629)
+.|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.+++.+|..+..++
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 7777777777766666677777777777777776532 45677777777777777777666543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2e-22 Score=193.84 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=143.6
Q ss_pred CCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcc
Q 040607 334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDIS 413 (629)
Q Consensus 334 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 413 (629)
+.+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4667888888877 3444443 578888888888887777778888888888888888887777778888888888888
Q ss_pred cCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECc
Q 040607 414 KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493 (629)
Q Consensus 414 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 493 (629)
+|.+.+..+..+.. +++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|+++
T Consensus 92 ~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 92 NNQLASLPLGVFDH--------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcccccChhHhcc--------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 88887777766655 7888888888888886666667788888888888888888777778888888888888
Q ss_pred CCcCCCCCCccccCCCCCCEEEcccCcCcccC
Q 040607 494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKT 525 (629)
Q Consensus 494 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 525 (629)
+|++++..+..|..+++|+.|++++|++.+..
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 88888777777888888888888888888763
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=8.8e-23 Score=194.92 Aligned_cols=197 Identities=19% Similarity=0.184 Sum_probs=134.3
Q ss_pred CCCcEEEccCcccccccCcccCCCCCCcEEEccCCc-CcccCchhhhccccCCceeccc-cccCCCccccccCCCCCccc
Q 040607 309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH-FIGEIPESLSNCNLFGGLYLSD-NHLSGKIPRWLGNLSVSEDV 386 (629)
Q Consensus 309 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 386 (629)
+++++|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777776666667777777777777775 6655555677777777777776 66665555566666677777
Q ss_pred cCCCCcccCCCCccccCCCccc---EEEcccC-cCCCCCCCCcCCCccccCCCccCCC-eeecccccCCCCCcccccccc
Q 040607 387 IMPNNHLEGPIPMEFCQLNFLQ---ILDISKK-NIFGSLPSCFNPFSIKQGKPLNSMS-GLDLSCNKLTGEIPLRIGNLT 461 (629)
Q Consensus 387 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~ 461 (629)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+.. +++|+ .|++++|.++...+..+.. +
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------LCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------TBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------hhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 777666664 343 66666666 7777777 676666666655 67777 7777777777333334444 7
Q ss_pred ccceEeccCcc-ccccccccccCC-CCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607 462 RIHTLNVSHNK-LTGLILSTFSNL-KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 462 ~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 519 (629)
+|++|++++|+ ++++++..|.++ ++|++|++++|++++. |.. .+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 78888888884 777777777777 7788888888887743 332 4567777777765
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.1e-21 Score=188.79 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=86.4
Q ss_pred CcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC
Q 040607 311 LRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN 390 (629)
Q Consensus 311 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 390 (629)
.++++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3445555554442 222221 3455555555555544444455555555555555555544444445555555555555
Q ss_pred CcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccC
Q 040607 391 NHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470 (629)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 470 (629)
|.+++..+..|..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 5555444444455555555555555554444443333 44555555555555533333444555555555555
Q ss_pred ccccccccccccCCCCCCEEECcCCcCC
Q 040607 471 NKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 471 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
|++++.++..|..+++|+.|++++|+++
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555444444555555555555555554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=200.42 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=107.9
Q ss_pred CccEEeccCCCCCcccchhh--hhCCCCCcEEEccCcccccccCccc--CCCCCCcEEEccCCcCcccCc----hhhhcc
Q 040607 285 SLSVLDLSKNRLIGKIPERL--AMGCFSLRYLVLSNNKMKGHIFSKK--INLTNLWRLQLDGNHFIGEIP----ESLSNC 356 (629)
Q Consensus 285 ~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l 356 (629)
.++.+.+.++.+.......+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45556666655542111111 0113557777777777766666665 666677777777776664333 223345
Q ss_pred ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCCCcCCCcccc
Q 040607 357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ 432 (629)
Q Consensus 357 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 432 (629)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------- 195 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK----------------------------- 195 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-----------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-----------------------------
Confidence 5555555555555544444444444444444444443221 0111233
Q ss_pred CCCccCCCeeecccccCCCCCcc----ccccccccceEeccCccccccccccccCC---CCCCEEECcCCcCCCCCCccc
Q 040607 433 GKPLNSMSGLDLSCNKLTGEIPL----RIGNLTRIHTLNVSHNKLTGLILSTFSNL---KQTESLDLSYNKLTGKIPPQL 505 (629)
Q Consensus 433 ~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~ 505 (629)
+++|+.|++++|.++ ..+. .+..+++|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+
T Consensus 196 ---l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 196 ---FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp ---SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred ---CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 444555555555544 2222 12344555555555555554444333333 35555555555555 334433
Q ss_pred cCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCC
Q 040607 506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPF 545 (629)
Q Consensus 506 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~ 545 (629)
. ++|+.|++++|++++. |. +..+++++.+++++|++
T Consensus 271 ~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp C--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred c--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 2 4555555555555532 22 23445555555555554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=198.71 Aligned_cols=179 Identities=19% Similarity=0.178 Sum_probs=128.8
Q ss_pred ccCCceeccccccCCCccccc--cCCCCCccccCCCCcccCCCC----ccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607 357 NLFGGLYLSDNHLSGKIPRWL--GNLSVSEDVIMPNNHLEGPIP----MEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430 (629)
Q Consensus 357 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 430 (629)
++|++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--- 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA--- 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC---
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc---
Confidence 335555555555444444444 445555555555555544332 23446778888888888887777777766
Q ss_pred ccCCCccCCCeeecccccCCCC--C--ccccccccccceEeccCccccccccc---cccCCCCCCEEECcCCcCCCCCCc
Q 040607 431 KQGKPLNSMSGLDLSCNKLTGE--I--PLRIGNLTRIHTLNVSHNKLTGLILS---TFSNLKQTESLDLSYNKLTGKIPP 503 (629)
Q Consensus 431 ~~~~~~~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~ 503 (629)
+++|+.|++++|++.+. . +..+..+++|++|+|++|+++..... .+..+++|++|++++|++++..|.
T Consensus 168 -----l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 168 -----FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp -----CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred -----CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 78888888888887532 1 23346789999999999999754332 357889999999999999988787
Q ss_pred cccCC---CCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607 504 QLVEL---NALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL 546 (629)
Q Consensus 504 ~~~~l---~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~ 546 (629)
.+..+ ++|++|++++|+++ .+|..+. ++++.+++++|...
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 77776 69999999999999 5566443 79999999999875
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.2e-22 Score=190.18 Aligned_cols=198 Identities=18% Similarity=0.150 Sum_probs=172.1
Q ss_pred CCCcEEEccCCcCcccCchhhhccccCCceeccccc-cCCCccccccCCCCCccccCCC-CcccCCCCccccCCCcccEE
Q 040607 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPN-NHLEGPIPMEFCQLNFLQIL 410 (629)
Q Consensus 333 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 410 (629)
++++.|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|+.|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998888899999999999999997 8766677899999999999998 99998888889999999999
Q ss_pred EcccCcCCCCCCCCcCCCccccCCCccCCC---eeecccc-cCCCCCccccccccccc-eEeccCccccccccccccCCC
Q 040607 411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMS---GLDLSCN-KLTGEIPLRIGNLTRIH-TLNVSHNKLTGLILSTFSNLK 485 (629)
Q Consensus 411 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~ 485 (629)
++++|.+.+ +|. +.. +++|+ .|++++| .+++..+..|.++++|+ +|++++|+++.+++..|.. +
T Consensus 111 ~l~~n~l~~-lp~-~~~--------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTK--------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp EEEEECCCS-CCC-CTT--------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred eCCCCCCcc-ccc-ccc--------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 999999977 444 544 67777 9999999 99866777899999999 9999999999877777776 8
Q ss_pred CCCEEECcCCc-CCCCCCccccCC-CCCCEEEcccCcCcccCCCccccccccCCCCCCCCC
Q 040607 486 QTESLDLSYNK-LTGKIPPQLVEL-NALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNP 544 (629)
Q Consensus 486 ~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np 544 (629)
+|++|++++|+ ++...+..|..+ ++|+.|++++|+++...+. .+.+++.+++.+++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 99999999995 997778889999 9999999999999965444 56677777777654
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.2e-23 Score=208.78 Aligned_cols=253 Identities=18% Similarity=0.155 Sum_probs=118.6
Q ss_pred EccCCCCccccc--CCCCCCccEEeccCCCCCcccch---hhhhCCC-CCcEEEccCcccccccCcccCCC-----CCCc
Q 040607 268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPE---RLAMGCF-SLRYLVLSNNKMKGHIFSKKINL-----TNLW 336 (629)
Q Consensus 268 ~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~ 336 (629)
+++.|.+.+..+ +...++|++|++++|.+++..+. ..+..++ +|++|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444443333 22233355555555555422221 2222344 55555555555554444333332 5555
Q ss_pred EEEccCCcCcccCchhhhc----c-ccCCceeccccccCCCccccc----cC-CCCCccccCCCCcccCCCC----cccc
Q 040607 337 RLQLDGNHFIGEIPESLSN----C-NLFGGLYLSDNHLSGKIPRWL----GN-LSVSEDVIMPNNHLEGPIP----MEFC 402 (629)
Q Consensus 337 ~L~l~~n~l~~~~~~~~~~----l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~----~~~~ 402 (629)
+|++++|.+++..+..+.. + ++|++|++++|.+.+..+..+ .. .++|++|++++|.+.+... ..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 5555555555444433222 2 455555555555544333222 22 2355555555555543222 1223
Q ss_pred CCC-cccEEEcccCcCCCCCCCCcCCCccccCCCc-cCCCeeecccccCCCC----Ccccccc-ccccceEeccCccccc
Q 040607 403 QLN-FLQILDISKKNIFGSLPSCFNPFSIKQGKPL-NSMSGLDLSCNKLTGE----IPLRIGN-LTRIHTLNVSHNKLTG 475 (629)
Q Consensus 403 ~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~ 475 (629)
.++ +|++|++++|.+.+..+..+... .... ++|+.|+|++|.+++. ++..+.. .++|++|+|++|.+++
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~----l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKF----LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHH----HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred cCCccccEeeecCCCCchhhHHHHHHH----HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 333 56666666665544433222110 0002 3566666666665532 2333333 2466666666666665
Q ss_pred ccc----ccccCCCCCCEEECcCCcCCCCCC-------ccccCCCCCCEEEcccCcCccc
Q 040607 476 LIL----STFSNLKQTESLDLSYNKLTGKIP-------PQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 476 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
..+ ..+..+++|++|++++|.+....+ ..+..+++|+.||+++|++...
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 433 223455666666666666432222 2345556666666666666544
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.4e-21 Score=188.99 Aligned_cols=203 Identities=16% Similarity=0.239 Sum_probs=113.8
Q ss_pred CCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCch
Q 040607 272 NFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE 351 (629)
Q Consensus 272 n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 351 (629)
+.+........+++|+.|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. .
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~ 101 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S 101 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G
T ss_pred CCcCceecHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h
Confidence 33333333344455555555555554 3331 1224555555555555543322 44455555555555544422 1
Q ss_pred hhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccc
Q 040607 352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK 431 (629)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 431 (629)
.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..
T Consensus 102 ------------------------~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~---- 149 (308)
T 1h6u_A 102 ------------------------AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG---- 149 (308)
T ss_dssp ------------------------GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG----
T ss_pred ------------------------hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC----
Confidence 344445555555555555432 1 25556666666666666654333 322
Q ss_pred cCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCC
Q 040607 432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511 (629)
Q Consensus 432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 511 (629)
+++|+.|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|
T Consensus 150 ----l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L 219 (308)
T 1h6u_A 150 ----LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL 219 (308)
T ss_dssp ----CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred ----CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC
Confidence 56677777777777633 32 6677777777777777776543 667777777777777777443 26677777
Q ss_pred CEEEcccCcCcc
Q 040607 512 AVFSVAHNKLSG 523 (629)
Q Consensus 512 ~~L~l~~N~l~~ 523 (629)
+.|++++|++++
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 777777777765
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.1e-22 Score=206.92 Aligned_cols=255 Identities=17% Similarity=0.102 Sum_probs=196.4
Q ss_pred EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccC----cccCCCC-CCcEEEccCCcCcccCchhhhcc-----c
Q 040607 288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF----SKKINLT-NLWRLQLDGNHFIGEIPESLSNC-----N 357 (629)
Q Consensus 288 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~ 357 (629)
.++++.|.+.+.+|.... ..++|++|++++|.+++..+ ..+..++ +|++|++++|.++...+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 467899999977776544 35669999999999998776 6778888 89999999999998888777775 9
Q ss_pred cCCceeccccccCCCcccc----ccCC-CCCccccCCCCcccCCCCccc----cC-CCcccEEEcccCcCCCCCCCCcCC
Q 040607 358 LFGGLYLSDNHLSGKIPRW----LGNL-SVSEDVIMPNNHLEGPIPMEF----CQ-LNFLQILDISKKNIFGSLPSCFNP 427 (629)
Q Consensus 358 ~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~ 427 (629)
+|++|++++|.+.+..+.. +..+ ++|+.|++++|.+++..+..+ .. .++|++|++++|.+.+..+..+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998766654 4444 899999999999987765543 33 369999999999987544332211
Q ss_pred CccccCCCc-cCCCeeecccccCCCCCccccc----cc-cccceEeccCcccccc----ccccccC-CCCCCEEECcCCc
Q 040607 428 FSIKQGKPL-NSMSGLDLSCNKLTGEIPLRIG----NL-TRIHTLNVSHNKLTGL----ILSTFSN-LKQTESLDLSYNK 496 (629)
Q Consensus 428 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L~~N~ 496 (629)
. .... ++|+.|++++|.+++..+..+. .+ ++|++|+|++|.+++. .+..+.. .++|++|++++|.
T Consensus 161 ~----l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 161 I----LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp H----HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred H----HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 0 0013 4899999999999866665443 44 6999999999999874 3344554 4699999999999
Q ss_pred CCCCCC----ccccCCCCCCEEEcccCcCcccCC-------CccccccccCCCCCCCCCCCC
Q 040607 497 LTGKIP----PQLVELNALAVFSVAHNKLSGKTP-------DWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 497 l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~~~~l~~l~~~~np~~c 547 (629)
+++..+ ..+..+++|+.|++++|.+....+ ..+..+++++.+++++|+...
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 986554 345677999999999999554333 345567788899999998743
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.3e-21 Score=190.24 Aligned_cols=195 Identities=18% Similarity=0.248 Sum_probs=137.6
Q ss_pred CcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCc
Q 040607 257 PKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336 (629)
Q Consensus 257 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 336 (629)
....+++|+.|++++|.+.....+..+++|+.|++++|.+. .++. +..+++|++|++++|.+++. ..+..+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45568899999999999987767889999999999999998 5555 55699999999999999864 3688999999
Q ss_pred EEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416 (629)
Q Consensus 337 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 416 (629)
.|++++|.+++. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~------------- 171 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN------------- 171 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-------------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC-------------
Confidence 999999998854 3 37788888888888887764332 4455555555555555543221 344
Q ss_pred CCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCc
Q 040607 417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496 (629)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 496 (629)
+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+
T Consensus 172 -------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 172 -------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred -------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence 4555555555555553222 5556666666666666665442 5566666666666666
Q ss_pred CC
Q 040607 497 LT 498 (629)
Q Consensus 497 l~ 498 (629)
++
T Consensus 229 i~ 230 (308)
T 1h6u_A 229 IT 230 (308)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=5.4e-23 Score=207.40 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=120.0
Q ss_pred CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccc-cCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607 284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGH-IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362 (629)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 362 (629)
++++.|++++|.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 3444455554444432222 22 244555555555544433 33444445555555555555444444445555555555
Q ss_pred ecccc-ccCC-CccccccCCCCCccccCCCC-cccCC-CCccccCCC-cccEEEcccC--cCC-CCCCCCcCCCccccCC
Q 040607 363 YLSDN-HLSG-KIPRWLGNLSVSEDVIMPNN-HLEGP-IPMEFCQLN-FLQILDISKK--NIF-GSLPSCFNPFSIKQGK 434 (629)
Q Consensus 363 ~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~~~~ 434 (629)
++++| .+++ .++..+..+++|+.|++++| .+++. .+..+..++ +|++|++++| .+. +.++..+..
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~------- 220 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR------- 220 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-------
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-------
Confidence 55555 3332 13333444555555555555 44432 233445555 6666666665 232 222222222
Q ss_pred CccCCCeeeccccc-CCCCCccccccccccceEeccCcc-ccccccccccCCCCCCEEECcCCcCCCCCCccccCC-CCC
Q 040607 435 PLNSMSGLDLSCNK-LTGEIPLRIGNLTRIHTLNVSHNK-LTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL-NAL 511 (629)
Q Consensus 435 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L 511 (629)
+++|+.|++++|. +++..+..+..+++|++|++++|. ++......+.++++|++|++++| ++. +.+..+ .++
T Consensus 221 -~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l 295 (336)
T 2ast_B 221 -CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEAL 295 (336)
T ss_dssp -CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHS
T ss_pred -CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhC
Confidence 5666667776666 554555566677777777777773 33322235666777777777777 332 223333 235
Q ss_pred CEEEcccCcCcccCCCccc
Q 040607 512 AVFSVAHNKLSGKTPDWVA 530 (629)
Q Consensus 512 ~~L~l~~N~l~~~~~~~~~ 530 (629)
+.|++++|++++..|.+++
T Consensus 296 ~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 296 PHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTSEESCCCSCCTTCSSCS
T ss_pred cceEEecccCccccCCccc
Confidence 5566777777777766543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4.9e-21 Score=193.72 Aligned_cols=242 Identities=17% Similarity=0.067 Sum_probs=166.2
Q ss_pred cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc-CcccCCCCCCcE-EEccC
Q 040607 265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI-FSKKINLTNLWR-LQLDG 342 (629)
Q Consensus 265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l~~ 342 (629)
++++.++++++..+. .-.+++++|++++|+++ .+|...|.++++|++|+|++|++.+.+ +..|.++++++. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCT-TCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCc-CcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 456777777764432 22467888888888887 778777777888888888888875543 456777877665 55566
Q ss_pred CcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC-CcccCCCCccccCCC-cccEEEcccCcCCCC
Q 040607 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN-NHLEGPIPMEFCQLN-FLQILDISKKNIFGS 420 (629)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 420 (629)
|+++...|..|..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.+...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 778877778888888888888888888766665666666677777754 455555555566654 577788888888766
Q ss_pred CCCCcCCCccccCCCccCCCeeeccc-ccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCC
Q 040607 421 LPSCFNPFSIKQGKPLNSMSGLDLSC-NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG 499 (629)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 499 (629)
.+..+. ..+|+.|++++ |.++...+.+|.++++|++|+|++|+|+.+++..| .+|+.|.+.++.--.
T Consensus 170 ~~~~f~---------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 170 HNSAFN---------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK 237 (350)
T ss_dssp CTTSST---------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC
T ss_pred Chhhcc---------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC
Confidence 555553 45677888864 55664444567888888888888888887766554 445555554443333
Q ss_pred CCCccccCCCCCCEEEcccCcC
Q 040607 500 KIPPQLVELNALAVFSVAHNKL 521 (629)
Q Consensus 500 ~~~~~~~~l~~L~~L~l~~N~l 521 (629)
.+| .+..+++|+.+++.++..
T Consensus 238 ~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 238 KLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCC-CTTTCCSCCEEECSCHHH
T ss_pred cCC-CchhCcChhhCcCCCCcc
Confidence 556 367778888888875543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.4e-22 Score=204.36 Aligned_cols=254 Identities=19% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCEEEccCCCCCCCCChhHHhcC--CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccc-cc--CCCCCCccE
Q 040607 214 DLKHVNLSHINLRGEFPNWLSENN--TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVH-IP--VGNMKSLSV 288 (629)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~--~~~~~~L~~ 288 (629)
.++.++++++.+. +..+ ..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+... .+ +..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4778888877665 2222 344 6777777777776665443 22455555555555554432 11 444555555
Q ss_pred EeccCCCCCcccchhhhhCCCCCcEEEccCc-ccccc-cCcccCCCCCCcEEEccCC-cCccc-Cchhhhccc-cCCcee
Q 040607 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNN-KMKGH-IFSKKINLTNLWRLQLDGN-HFIGE-IPESLSNCN-LFGGLY 363 (629)
Q Consensus 289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ 363 (629)
|++++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 555555544333333332 455555555555 34331 2233344445555555555 44432 233344444 444444
Q ss_pred ccccccCCCccccccCCCCCccccCCCCccc-CCCCccccCCCcccEEEcccCc-CCCCCCCCcCCCccccCCCccCCCe
Q 040607 364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKN-IFGSLPSCFNPFSIKQGKPLNSMSG 441 (629)
Q Consensus 364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~ 441 (629)
+++|.+ .++ +.++..+..+++|++|++++|. +++..+..+.. +++|+.
T Consensus 202 l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--------l~~L~~ 251 (336)
T 2ast_B 202 LSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------LNYLQH 251 (336)
T ss_dssp CCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--------CTTCCE
T ss_pred eCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--------CCCCCE
Confidence 444421 222 1233344455566666666665 44444444433 566666
Q ss_pred eeccccc-CCCCCccccccccccceEeccCccccccccccccCC-CCCCEEECcCCcCCCCCCccccC
Q 040607 442 LDLSCNK-LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL-KQTESLDLSYNKLTGKIPPQLVE 507 (629)
Q Consensus 442 L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 507 (629)
|++++|. +.......+..+++|+.|++++| ++.. .+..+ .+++.|++++|++++..|..+..
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 6666664 22111124566777777777777 4332 22222 23555667778887777766543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=9.9e-23 Score=209.46 Aligned_cols=242 Identities=19% Similarity=0.248 Sum_probs=144.2
Q ss_pred CcccCCCccEEEccCCCCccccc------CCCCCCccEEeccCCC---CCcccchhhh------hCCCCCcEEEccCccc
Q 040607 257 PKHARRHLTYLDVSDNFFQVHIP------VGNMKSLSVLDLSKNR---LIGKIPERLA------MGCFSLRYLVLSNNKM 321 (629)
Q Consensus 257 ~~~~~~~L~~L~L~~n~~~~~~~------~~~~~~L~~L~L~~n~---l~~~~~~~~~------~~~~~L~~L~L~~n~l 321 (629)
.+..+++|+.|++++|.+....+ +..+++|+.|++++|. +.+.+|..+. ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34455667777777776664322 5566777777777653 3333443331 2345555555555555
Q ss_pred cc----ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCC---------CCCccccC
Q 040607 322 KG----HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL---------SVSEDVIM 388 (629)
Q Consensus 322 ~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~l 388 (629)
.. .++..+..+++|++|++++|.++...+..+.. .+..+ ++|+.|++
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcEEEC
Confidence 54 23334445555555555555554322222221 11112 45555555
Q ss_pred CCCcccC-CCC---ccccCCCcccEEEcccCcCCC-----CCCCCcCCCccccCCCccCCCeeecccccCC----CCCcc
Q 040607 389 PNNHLEG-PIP---MEFCQLNFLQILDISKKNIFG-----SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT----GEIPL 455 (629)
Q Consensus 389 ~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~ 455 (629)
++|.+.. ..+ ..+..+++|++|++++|.+.. ..+..+.. +++|+.|+|++|.++ ..+|.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------CQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------CTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------CCCccEEECcCCCCCcHHHHHHHH
Confidence 5555541 222 244556677777777776641 22223333 677778888888774 35667
Q ss_pred ccccccccceEeccCcccccc----cccccc--CCCCCCEEECcCCcCCC----CCCccc-cCCCCCCEEEcccCcCccc
Q 040607 456 RIGNLTRIHTLNVSHNKLTGL----ILSTFS--NLKQTESLDLSYNKLTG----KIPPQL-VELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 456 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~ 524 (629)
.+..+++|++|+|++|.+++. .+..+. .+++|++|++++|.++. .+|..+ ..+++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 778888888888888888765 345553 37888888888888886 366666 5578888888888888876
Q ss_pred CC
Q 040607 525 TP 526 (629)
Q Consensus 525 ~~ 526 (629)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 64
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.3e-20 Score=190.62 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCcc-CCCcccCCCCCCCe-eecc
Q 040607 46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYG-VPPWCLGNMTSLQV-LNIS 123 (629)
Q Consensus 46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L~L~ 123 (629)
+++.++++++ .+|..+ .+++++|+|++|.++ .+++++|.++++|++|+|++|++.+ +++.+|.++++|++ +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3444444444 233333 134555555555554 4544445555555555555555432 33344555554443 3333
Q ss_pred cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEEC
Q 040607 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172 (629)
Q Consensus 124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 172 (629)
.|.++ .++++.|.++++|++|++++|.++ ..+...+....++..+++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEE
T ss_pred CCccc-ccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhh
Confidence 44454 444444555555555555555544 222223333344444444
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.8e-23 Score=211.22 Aligned_cols=232 Identities=16% Similarity=0.201 Sum_probs=171.9
Q ss_pred CCCCcEEEccCcccccccC----cccCCCCCCcEEEccCCc---CcccCchhh-------hccccCCceeccccccCC--
Q 040607 308 CFSLRYLVLSNNKMKGHIF----SKKINLTNLWRLQLDGNH---FIGEIPESL-------SNCNLFGGLYLSDNHLSG-- 371 (629)
Q Consensus 308 ~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~-- 371 (629)
+++|++|++++|.+....+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5667777777776665432 335567777777777753 333444443 567778888888887775
Q ss_pred --CccccccCCCCCccccCCCCcccCCCCcc----ccCC---------CcccEEEcccCcCC-CCCC---CCcCCCcccc
Q 040607 372 --KIPRWLGNLSVSEDVIMPNNHLEGPIPME----FCQL---------NFLQILDISKKNIF-GSLP---SCFNPFSIKQ 432 (629)
Q Consensus 372 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~~~~~~ 432 (629)
.++..+..+++|+.|++++|.+.+..+.. +..+ ++|++|++++|++. ...+ ..+..
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~----- 185 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS----- 185 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-----
Confidence 35666777788888888888775433222 3333 89999999999986 3333 23333
Q ss_pred CCCccCCCeeecccccCCC-----CCccccccccccceEeccCcccc----ccccccccCCCCCCEEECcCCcCCCC---
Q 040607 433 GKPLNSMSGLDLSCNKLTG-----EIPLRIGNLTRIHTLNVSHNKLT----GLILSTFSNLKQTESLDLSYNKLTGK--- 500 (629)
Q Consensus 433 ~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~--- 500 (629)
+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ ...+..+..+++|++|++++|.+++.
T Consensus 186 ---~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 186 ---HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp ---CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred ---CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 7899999999999873 23447888999999999999996 55677889999999999999999865
Q ss_pred -CCccccC--CCCCCEEEcccCcCcc----cCCCcc-ccccccCCCCCCCCCCCC
Q 040607 501 -IPPQLVE--LNALAVFSVAHNKLSG----KTPDWV-AQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 501 -~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~l~~~~np~~c 547 (629)
+|..+.. +++|+.|++++|++.. .+|..+ ..+++++.+++++|++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4566643 8999999999999998 466655 557999999999999865
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=2.8e-20 Score=174.58 Aligned_cols=156 Identities=23% Similarity=0.264 Sum_probs=91.1
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 439 (629)
+.++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.. +++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSL 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------CSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------CcCC
Confidence 45666666665 3343332 45666666666666555555666666666666666665555555544 5566
Q ss_pred CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 519 (629)
+.|+|++|.++...+..|.++++|++|+|++|.++++.+..|.++++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 66666666665444444555666666666666666555555666666666666666666555555555666666666666
Q ss_pred cCcccCC
Q 040607 520 KLSGKTP 526 (629)
Q Consensus 520 ~l~~~~~ 526 (629)
++.|.++
T Consensus 163 ~~~c~c~ 169 (220)
T 2v9t_B 163 PFICDCH 169 (220)
T ss_dssp CEECSGG
T ss_pred CcCCCCc
Confidence 6655444
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.8e-20 Score=190.31 Aligned_cols=157 Identities=20% Similarity=0.202 Sum_probs=71.8
Q ss_pred CccccCCCCcccCCCCcccc-CCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccc
Q 040607 383 SEDVIMPNNHLEGPIPMEFC-QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461 (629)
Q Consensus 383 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 461 (629)
++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+.. +++|+.|+|++|.+++..+..|..++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC--------CCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 33444444444433333333 4444444444444444444444433 44455555555554433334444555
Q ss_pred ccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccc---cCCCCCCEEEcccCcCcccCCCccccccc--cC
Q 040607 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL---VELNALAVFSVAHNKLSGKTPDWVAQFAT--FN 536 (629)
Q Consensus 462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~ 536 (629)
+|++|+|++|.|+++.+..|.++++|++|+|++|+++...+..| ..+++|+.|++++|+++...+..+..++. ++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 55555555555554444455555555555555555553322223 33455555555555555433333333333 24
Q ss_pred CCCCCCCCCCC
Q 040607 537 GSSYDGNPFLS 547 (629)
Q Consensus 537 ~l~~~~np~~c 547 (629)
.+++++|||.|
T Consensus 193 ~l~l~~N~~~C 203 (361)
T 2xot_A 193 GLYLHNNPLEC 203 (361)
T ss_dssp TEECCSSCEEC
T ss_pred eEEecCCCccC
Confidence 45555555555
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=170.51 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=124.6
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS 438 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 438 (629)
+.+++++|.++. +|..+. ..++.|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+.. +++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASG 82 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT--------CTT
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC--------CCC
Confidence 578888888874 555443 456788888888886644 45788888888888888887777777766 788
Q ss_pred CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH 518 (629)
Q Consensus 439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 518 (629)
|+.|+|++|.+++..+..|..+++|++|+|++|+++++.+..|.++++|++|++++|++++..|..|..+++|+.|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 88888888888877777788888888888888888888788888888888888888888877788888888888888888
Q ss_pred CcCcccCC
Q 040607 519 NKLSGKTP 526 (629)
Q Consensus 519 N~l~~~~~ 526 (629)
|++.|.++
T Consensus 163 N~l~c~c~ 170 (220)
T 2v70_A 163 NPFNCNCY 170 (220)
T ss_dssp CCEECSGG
T ss_pred cCCcCCCc
Confidence 88887776
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=167.97 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=110.4
Q ss_pred cCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCcc
Q 040607 358 LFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLN 437 (629)
Q Consensus 358 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 437 (629)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.. ++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~ 100 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------LT 100 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------cc
Confidence 3444444444444333334444555555555555555444445666777777777777776665555554 67
Q ss_pred CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607 438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517 (629)
Q Consensus 438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 517 (629)
+|+.|++++|.+++..+..+..+++|++|++++|.++++++..|..+++|++|++++|.+.+ .+++|+.|+++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 78888888888876666667788888888888888888777778888888888888887763 34578888888
Q ss_pred cCcCcccCCCcccccc
Q 040607 518 HNKLSGKTPDWVAQFA 533 (629)
Q Consensus 518 ~N~l~~~~~~~~~~~~ 533 (629)
.|++++.+|.+++.+.
T Consensus 174 ~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHCTTTBBCTTSSBC
T ss_pred HHhCCceeeccCcccc
Confidence 8988888887666543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.5e-19 Score=192.09 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=118.8
Q ss_pred CCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCC
Q 040607 310 SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP 389 (629)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 389 (629)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555554 23222 145555555555555 233 234556666666665554 333 332 66666666
Q ss_pred CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS 469 (629)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 469 (629)
+|.+++ +|. .+++|+.|++++|.+.+ +|. . +++|+.|++++|.+++ +|. +. ++|+.|+|+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~--------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L--------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 666665 333 46777888888877765 333 1 6778888888888874 555 54 788888888
Q ss_pred CccccccccccccCCCCC-------CEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607 470 HNKLTGLILSTFSNLKQT-------ESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF 532 (629)
Q Consensus 470 ~n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 532 (629)
+|.|+.++. |.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 189 ~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 189 TNLLESLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCSSCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCCchhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888885443 543 66 88888888888 567777778888888888888888777665554
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3e-19 Score=166.40 Aligned_cols=108 Identities=22% Similarity=0.202 Sum_probs=44.5
Q ss_pred CCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCC
Q 040607 310 SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP 389 (629)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 389 (629)
++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444433344444444444444444443333334444444444444444443333333333333333333
Q ss_pred CCcccCCCCccccCCCcccEEEcccCcC
Q 040607 390 NNHLEGPIPMEFCQLNFLQILDISKKNI 417 (629)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l 417 (629)
+|.+.+..+..+..+++|++|++++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 3333333333333333333333333333
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.6e-19 Score=168.18 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=112.9
Q ss_pred CCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS 438 (629)
Q Consensus 359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 438 (629)
-+.++.+++.+. .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+.. +++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--------l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--------LTQ 89 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTT
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc--------CCC
Confidence 456777777776 4444332 67778888888887777777777788888888888776665555555 677
Q ss_pred CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH 518 (629)
Q Consensus 439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 518 (629)
|+.|+|++|.+++..+..|..+++|++|+|++|+++. +|..+..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 7778888777776666667777777778887777774 355667777777777777777766666677777777777777
Q ss_pred CcCcccCC
Q 040607 519 NKLSGKTP 526 (629)
Q Consensus 519 N~l~~~~~ 526 (629)
|++.|.++
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 77777665
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.7e-19 Score=166.91 Aligned_cols=156 Identities=23% Similarity=0.312 Sum_probs=130.7
Q ss_pred ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607 384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI 463 (629)
Q Consensus 384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 463 (629)
+.++.+++.++. +|..+. ++++.|++++|.+.+..+..+.. +++|+.|+|++|.+++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 457777777774 444433 67899999999888877777766 7889999999999887778888889999
Q ss_pred ceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCC
Q 040607 464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGN 543 (629)
Q Consensus 464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~n 543 (629)
++|+|++|.++++++..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+.+++.+++++|
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 99999999998888888888999999999999998888888888999999999999998888877888888889999999
Q ss_pred CCCCCCCC
Q 040607 544 PFLSSSCN 551 (629)
Q Consensus 544 p~~c~~C~ 551 (629)
||.| +|.
T Consensus 163 ~~~c-~c~ 169 (220)
T 2v9t_B 163 PFIC-DCH 169 (220)
T ss_dssp CEEC-SGG
T ss_pred CcCC-CCc
Confidence 9988 675
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=166.36 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=123.4
Q ss_pred ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607 384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462 (629)
Q Consensus 384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 462 (629)
+.+++++|.++. +|..+ .+.+++|++++|.+.+..+ ..+.. +++|+.|++++|.+++..+..|..+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 467888888774 44443 2456788888888877654 34544 788888888888888666667888888
Q ss_pred cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG 542 (629)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~ 542 (629)
|++|+|++|.++++++..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..+.+++.+++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 88888888888888888888888888888888888887788888888888888888888888787788888888888888
Q ss_pred CCCCCCCCC
Q 040607 543 NPFLSSSCN 551 (629)
Q Consensus 543 np~~c~~C~ 551 (629)
|||.| +|.
T Consensus 163 N~l~c-~c~ 170 (220)
T 2v70_A 163 NPFNC-NCY 170 (220)
T ss_dssp CCEEC-SGG
T ss_pred cCCcC-CCc
Confidence 88888 664
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.4e-19 Score=180.86 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=102.7
Q ss_pred CCceeccccccCCCcccccc-CCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCcc
Q 040607 359 FGGLYLSDNHLSGKIPRWLG-NLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLN 437 (629)
Q Consensus 359 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 437 (629)
++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.. ++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~ 112 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD--------LQ 112 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------CT
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--------Cc
Confidence 33444444444433333333 4455555555555555444555666666777777777666655555554 67
Q ss_pred CCCeeecccccCCCCCccccccccccceEeccCccccccccccc---cCCCCCCEEECcCCcCCCCCCccccCCCC--CC
Q 040607 438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF---SNLKQTESLDLSYNKLTGKIPPQLVELNA--LA 512 (629)
Q Consensus 438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~ 512 (629)
+|+.|+|++|.+++..+..|..+++|+.|+|++|.++++++..| ..+++|+.|+|++|+|+...+..+..++. ++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 77777777777776666777777888888888888877666666 45788888888888888655566777766 37
Q ss_pred EEEcccCcCcccCC
Q 040607 513 VFSVAHNKLSGKTP 526 (629)
Q Consensus 513 ~L~l~~N~l~~~~~ 526 (629)
.|++++|++.|.+.
T Consensus 193 ~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 193 GLYLHNNPLECDCK 206 (361)
T ss_dssp TEECCSSCEECCHH
T ss_pred eEEecCCCccCCcC
Confidence 78888888877654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=168.30 Aligned_cols=171 Identities=24% Similarity=0.362 Sum_probs=109.5
Q ss_pred CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607 308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI 387 (629)
Q Consensus 308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 387 (629)
+++|++|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+ +
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-------------- 105 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-------------- 105 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G--------------
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C--------------
Confidence 45666666666666543 224555666666666666554322 5555555555555555442 1
Q ss_pred CCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607 388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467 (629)
Q Consensus 388 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 467 (629)
..+..+++|++|++++|.+.+. ..+.. +++|+.|++++|.+++. ..+..+++|+.|+
T Consensus 106 -----------~~l~~l~~L~~L~L~~n~i~~~--~~l~~--------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 106 -----------SSLKDLKKLKSLSLEHNGISDI--NGLVH--------LPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp -----------GGGTTCTTCCEEECTTSCCCCC--GGGGG--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred -----------hhhccCCCCCEEECCCCcCCCC--hhhcC--------CCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 1255556666666666666443 22322 66777777777777643 4677788888888
Q ss_pred ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
+++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|+.|++++|++...
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 88888877654 7788888888888888874 34 377788888888888887753
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.1e-18 Score=160.26 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=112.3
Q ss_pred CccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462 (629)
Q Consensus 383 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 462 (629)
.+.++.+++.+.. +|..+. ++|++|++++|.+.+..|..+.. +++|+.|+|++|.++...+..|..+++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDS--------LINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhC--------ccCCcEEECCCCCCCCcChhhcccCCC
Confidence 4456666666663 343332 67777778777777776766655 677777788777777555566677777
Q ss_pred cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG 542 (629)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~ 542 (629)
|+.|+|++|+++++++..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+.+++.+++.+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 788888877777777777777777788888777777 5677777777778888877777766666667777777777777
Q ss_pred CCCCCCCCC
Q 040607 543 NPFLSSSCN 551 (629)
Q Consensus 543 np~~c~~C~ 551 (629)
||+.| +|.
T Consensus 169 N~~~c-~c~ 176 (229)
T 3e6j_A 169 NPWDC-ECR 176 (229)
T ss_dssp SCBCT-TBG
T ss_pred CCccC-Ccc
Confidence 87777 553
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.2e-18 Score=169.12 Aligned_cols=138 Identities=20% Similarity=0.185 Sum_probs=74.2
Q ss_pred cCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC
Q 040607 270 SDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349 (629)
Q Consensus 270 ~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 349 (629)
..+.+........+++|+.|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++.
T Consensus 32 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~- 105 (291)
T 1h6t_A 32 KKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL- 105 (291)
T ss_dssp TCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-
T ss_pred cCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-
Confidence 3333333333445556666666666655 3432 2236666666666666665433 66666777777777766542
Q ss_pred chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC
Q 040607 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418 (629)
Q Consensus 350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 418 (629)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 2366666677777766666532 2344445555555555544432 23444444444444444443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=9.2e-18 Score=178.35 Aligned_cols=193 Identities=23% Similarity=0.272 Sum_probs=88.4
Q ss_pred CccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccC
Q 040607 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDG 342 (629)
Q Consensus 263 ~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 342 (629)
+++.|++++|.+.+..+ .-.++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 34444444444443211 11245555555555555 444 124555556665555554 333 332 555666666
Q ss_pred CcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422 (629)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 422 (629)
|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.+.. +|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hh
Confidence 65554 332 34555555555555553 232 23455555555555553 333 33 555555555555542 22
Q ss_pred CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccC
Q 040607 423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSN 483 (629)
Q Consensus 423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 483 (629)
. +.. .-....+.|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..|..
T Consensus 197 ~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2 210 00000111255555555555 34444444555555555555555544444433
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.7e-18 Score=173.48 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=180.5
Q ss_pred ccceeeccCcccCccchhhhcC-CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCC--------
Q 040607 43 FIGFRAMDGTALDKNFLQVIKS-MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGN-------- 113 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------- 113 (629)
.+++|.++++ +...-...+.. +++|++|||++|.+. .... .-..++.++.+.+..| .+++.+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~-~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSG-KAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEE-SSSSSGGGCCEEECTT---EECTTTTEEEETTEEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecC-cccccccccccccccc---ccCHHHhcccccccccc
Confidence 4566666654 22222233333 677777777777765 1111 1112222344444444 345556666
Q ss_pred CCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCccee---ecCCCCcCCcc
Q 040607 114 MTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA---QTESHSLTPKF 190 (629)
Q Consensus 114 l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~ 190 (629)
+++|+.|++.+ .++ .|+..+|.+|++|+.+++.+|.+. .++...|..+.++..+....+.... ......+..+.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777766 566 666666777777777777776665 4555666666666666555432110 01112223333
Q ss_pred ccc-EEEeccCCCCCcChhhc----CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCcc
Q 040607 191 QLN-SIILSHGSGVTFPKFLY----HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT 265 (629)
Q Consensus 191 ~L~-~L~l~~~~~~~~~~~l~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 265 (629)
.|+ .+.+.. ...++..+. ...+++.+.+.++- .......+...+++|+.+++++|.++.+...+|.++.+|+
T Consensus 177 ~L~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecC--CCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 443 222221 122332222 34567777777652 2222333444589999999999999999999999999999
Q ss_pred EEEccCCCCccccc--CCCCCCcc-EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEc
Q 040607 266 YLDVSDNFFQVHIP--VGNMKSLS-VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQL 340 (629)
Q Consensus 266 ~L~L~~n~~~~~~~--~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 340 (629)
.+++.+| +....+ |.++++|+ .+++.+ .++ .++...|.++++|+++++++|.++.+.+.+|.++++|+.+..
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999987 554433 88999999 999988 666 888889999999999999999999999999999999999864
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.7e-18 Score=170.27 Aligned_cols=258 Identities=16% Similarity=0.145 Sum_probs=129.9
Q ss_pred CCCCcEEEccCCcCc--cCCCcccCCCCCCCeeecccccCCcccCccccCC--------CCCCCEEEccCcccccccCCc
Q 040607 90 FVHLQELHVDHNNLY--GVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH--------LKSIQELKLSNNYFQIPISLG 159 (629)
Q Consensus 90 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~ 159 (629)
+++|++|+|++|++. ...... ++.++.+.+..| .+|..+|.+ +++|+.|++.+ .++ .++..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHH
Confidence 556666666666665 222211 222333444333 344445555 66666666666 454 45555
Q ss_pred ccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC----CCCc-ChhhcCCCCCC-EEEccCCCCCCCCChhH
Q 040607 160 PLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS----GVTF-PKFLYHQHDLK-HVNLSHINLRGEFPNWL 233 (629)
Q Consensus 160 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~-~~~l~~~~~L~-~L~L~~n~l~~~~~~~~ 233 (629)
+|..+++|+.+++++|.+....+ ..|..+.++..+...... ...+ ...+..+..|+ .+.+... +.++..+
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~ 194 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEI 194 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred HhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHH
Confidence 66666666666666666554333 334444444444433210 0111 12233444444 3433322 1233333
Q ss_pred Hhc---CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCC
Q 040607 234 SEN---NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGC 308 (629)
Q Consensus 234 ~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 308 (629)
+.. ..++..+.+.++-...........+++|+.+++++|.+....+ |..+.+|+.+++.+| +. .++...|.++
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~ 272 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNC 272 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCC
Confidence 322 2334444444331111000011125566666666666554433 666666666666665 44 5666666666
Q ss_pred CCCc-EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607 309 FSLR-YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363 (629)
Q Consensus 309 ~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 363 (629)
++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|.++++|+.++
T Consensus 273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666 666665 55555566666666666666666666656666666666666654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.1e-17 Score=179.76 Aligned_cols=189 Identities=21% Similarity=0.336 Sum_probs=99.2
Q ss_pred CccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceec
Q 040607 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL 364 (629)
Q Consensus 285 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 364 (629)
.+..+.+..+.+.+.++.. .+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~---~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEECHH---HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccchh---cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 3445556666655333321 256777777777776643 2 46667777777777777665433 666677777777
Q ss_pred cccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeec
Q 040607 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL 444 (629)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 444 (629)
++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+.. +++|+.|+|
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~--------l~~L~~L~L 160 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR--------LTKLDTLSL 160 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGS--------CTTCSEEEC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcc--------cCCCCEEEC
Confidence 7776653 22 455555555555555555532 2344555555555555554432 22222 444455555
Q ss_pred ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
++|.+++..| +..+++|+.|+|++|.++++ ..+..+++|+.|+|++|+++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 5554443322 44444455555555444443 12444444444444444444
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=152.06 Aligned_cols=131 Identities=25% Similarity=0.397 Sum_probs=84.7
Q ss_pred cEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCC
Q 040607 408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQT 487 (629)
Q Consensus 408 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 487 (629)
+.+++++|.+.. +|..+ .++++.|++++|.++ .+|..|..+++|+.|+|++|.|+++.+..|.++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~----------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI----------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSS-CCSCC----------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCc-CCCCC----------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 456666666543 23322 345666666666666 555666666777777777777766666666677777
Q ss_pred CEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 488 ESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 488 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
++|++++|+|++..|..|..+++|+.|++++|+++...+..+..+++++.+++++|||.| +|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-~c~ 143 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC-DCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-SGG
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec-CCc
Confidence 777777777766666666667777777777777766555556666666777777777766 553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.5e-17 Score=178.79 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=92.9
Q ss_pred EeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccc
Q 040607 243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322 (629)
Q Consensus 243 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 322 (629)
+.+..+.+..+. .+..+++|+.|++++|.+.....+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+.
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCC
Confidence 344444444332 244566677777777776655556666777777777776663 333 334666777777777666
Q ss_pred cccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc
Q 040607 323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402 (629)
Q Consensus 323 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 402 (629)
+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +.
T Consensus 101 ~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 101 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp CC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 42 2456666666666666666542 3455666666666666665543 344555555555555555554333 44
Q ss_pred CCCcccEEEcccCcCCC
Q 040607 403 QLNFLQILDISKKNIFG 419 (629)
Q Consensus 403 ~l~~L~~L~l~~n~l~~ 419 (629)
.+++|+.|+|++|.+.+
T Consensus 173 ~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TCTTCCEEECCSSCCCB
T ss_pred cCCCCCEEECcCCCCCC
Confidence 55555555555554433
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.9e-17 Score=150.41 Aligned_cols=132 Identities=23% Similarity=0.298 Sum_probs=95.4
Q ss_pred ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607 384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462 (629)
Q Consensus 384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 462 (629)
+.++++++.+. .+|..+. +++++|++++|.+.+..+. .+.. +++|+.|++++|.+++..|..|.++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR--------LPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG--------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc--------CCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 56777777776 3444332 2777777877777666554 3444 677777777777777666777777777
Q ss_pred cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|++|+|++|++++.++..|.++++|++|++++|++++..|..|..+++|++|++++|++.|.++
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7777777777777777777777777777777777777777777777777777777777777665
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.7e-17 Score=150.62 Aligned_cols=172 Identities=20% Similarity=0.240 Sum_probs=120.5
Q ss_pred CceeccccccCCCccccccCCCCCccccCCCCcccCCCCc-cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPM-EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS 438 (629)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 438 (629)
+.+++++|.+. .+|..+. ..++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+.. +++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------ASH 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------CTT
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC--------ccc
Confidence 67888888876 4555443 3788888888888766654 4788888888888888888877777766 788
Q ss_pred CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCc-cccCCCCCCEEEcc
Q 040607 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP-QLVELNALAVFSVA 517 (629)
Q Consensus 439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~ 517 (629)
|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.+++..+- .+.. .++...+.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~ 157 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLN 157 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCC
Confidence 88888888888877777788888888888888888888888888888888888888888754332 1110 12222334
Q ss_pred cCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607 518 HNKLSGKTPDWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 518 ~N~l~~~~~~~~~~~~~l~~l~~~~np~~c 547 (629)
.+...|..|..+ ......++..+.+.|
T Consensus 158 ~~~~~C~~P~~l---~~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 158 GGAARCGAPSKV---RDVQIKDLPHSEFKC 184 (192)
T ss_dssp GGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred CCCCCCCCChHH---cCCChhhCcHhhcCc
Confidence 455555555433 233344566666655
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-17 Score=151.02 Aligned_cols=153 Identities=17% Similarity=0.269 Sum_probs=103.4
Q ss_pred ccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCC
Q 040607 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434 (629)
Q Consensus 355 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 434 (629)
.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+.. +..+..+++|++|++++|.+.+..+..+..
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------- 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------- 110 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence 3444555555555554 222 34455555555555554432 235666777888888887777656666655
Q ss_pred CccCCCeeecccccCCCCCccccccccccceEeccCcc-ccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607 435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNK-LTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV 513 (629)
Q Consensus 435 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 513 (629)
+++|+.|++++|.+++..+..+..+++|++|++++|. ++.. + .+.++++|++|++++|++++ ++ .+..+++|+.
T Consensus 111 -l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 -LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp -CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred -CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 7788888888888876667778888888888888887 6654 3 57888888888888888885 33 6778888888
Q ss_pred EEcccCcCcc
Q 040607 514 FSVAHNKLSG 523 (629)
Q Consensus 514 L~l~~N~l~~ 523 (629)
|++++|++..
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888888753
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=5e-16 Score=159.60 Aligned_cols=333 Identities=13% Similarity=0.117 Sum_probs=162.7
Q ss_pred ccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcc
Q 040607 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGP 160 (629)
Q Consensus 81 ~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 160 (629)
+|...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++ .++..+|.++++|+.+.+..+- . .+...+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a 135 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA 135 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence 455556666666666666533 55566666666666666666544 44 5555566666666665554432 2 233334
Q ss_pred cCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCC
Q 040607 161 LYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240 (629)
Q Consensus 161 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 240 (629)
|..+..+.......... . -...|..+++|+.+.+..+- . .++...|..+++|
T Consensus 136 F~~~~~~~~~~~~~~~~--i------------------------~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTV--I------------------------GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKL 187 (394)
T ss_dssp TTTCCCSEEECCTTCCE--E------------------------CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTC
T ss_pred eecccccccccCccccc--c------------------------chhhhcccCCCcEEecCCcc-c-eeccccccCCCCc
Confidence 44443222222111110 0 01234455556666554432 1 2334444555666
Q ss_pred cEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcc
Q 040607 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320 (629)
Q Consensus 241 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 320 (629)
+.+.+..+ ++.+...+|..+..|+.+.+..+.......+.....|+.+.+... ++ .+....+.++..++.+.+..+.
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCc
Confidence 66655443 444455556566666555554433221111223345555555432 22 3444444455555555555443
Q ss_pred cccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcc
Q 040607 321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME 400 (629)
Q Consensus 321 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 400 (629)
.. .....|..+..++.+....+.+ ....|..+.+|+.+.+.++ +......+
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-------------------------i~~I~~~a 315 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-------------------------VKFIGEEA 315 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-------------------------CCEECTTT
T ss_pred ce-eeccccccccccceeccCceee---ccccccccccccccccccc-------------------------cceechhh
Confidence 22 3344555555555555444321 2234444555555544332 22222334
Q ss_pred ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccccc
Q 040607 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480 (629)
Q Consensus 401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 480 (629)
|.++.+|+.+++.. .+......+|.+ +.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++. ...+
T Consensus 316 F~~c~~L~~i~lp~-~v~~I~~~aF~~--------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~ 383 (394)
T 4fs7_A 316 FESCTSLVSIDLPY-LVEEIGKRSFRG--------CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYD 383 (394)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGG
T ss_pred hcCCCCCCEEEeCC-cccEEhHHhccC--------CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhhe
Confidence 45555555555532 233333444444 566666666554 44344566777777777777654 222 2345
Q ss_pred ccCCCCCCEE
Q 040607 481 FSNLKQTESL 490 (629)
Q Consensus 481 ~~~l~~L~~L 490 (629)
|.++++|+.+
T Consensus 384 F~~c~~L~~I 393 (394)
T 4fs7_A 384 FEDTTKFKWI 393 (394)
T ss_dssp BCTTCEEEEE
T ss_pred ecCCCCCcEE
Confidence 6677666654
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.8e-17 Score=157.65 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=106.4
Q ss_pred CcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEccc
Q 040607 335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414 (629)
Q Consensus 335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 414 (629)
+..++++++.++... .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 444444554444221 34455555555555555542 22 34555556666666665554333 66666777777777
Q ss_pred CcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcC
Q 040607 415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494 (629)
Q Consensus 415 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 494 (629)
|.+.+..+.. .++|+.|++++|.+++ ++ .+..+++|+.|++++|+++++. .+..+++|++|++++
T Consensus 95 N~l~~l~~~~-----------~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 95 NRLKNLNGIP-----------SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SCCSCCTTCC-----------CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred CccCCcCccc-----------cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence 7665432211 1567777777777773 33 5777888888888888887753 577788888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 495 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
|++++. ..+..+++|+.|++++|++.+.
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888755 5677788888888888888765
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=8.6e-16 Score=157.84 Aligned_cols=316 Identities=11% Similarity=0.044 Sum_probs=193.7
Q ss_pred ccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccC
Q 040607 53 ALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNIS 132 (629)
Q Consensus 53 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~ 132 (629)
.++.+...+|.+|++|+.+.+..+ ++ .|...+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eec
Confidence 356666788999999999999754 66 888889999999999999865 77888889999999999988765 44 666
Q ss_pred ccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCC
Q 040607 133 SPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ 212 (629)
Q Consensus 133 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 212 (629)
..+|.++..++........ .+...+|.++++|+.+.+..+.. ......|..+.+|+.+.+..+....-...+..+
T Consensus 133 ~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~ 207 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAEC 207 (394)
T ss_dssp TTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred ceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCceEeCchhhccc
Confidence 6678887655444433332 34456788999999999976542 233345566667777776654333334456666
Q ss_pred CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-ccccCCCCCCccEEec
Q 040607 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIPVGNMKSLSVLDL 291 (629)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~L~~L~L 291 (629)
..|+.+.+..+... +.... ...+.|+.+.+.. .++.+...+|..+..++.+.+..+... ....|..+..++.+..
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceE--eehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 66776666554322 22222 2345666666643 234445556666666666666554332 1122555566666555
Q ss_pred cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC
Q 040607 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG 371 (629)
Q Consensus 292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (629)
... .++...|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ +..
T Consensus 284 ~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 284 GSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp CSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred Cce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 443 234444555666666666543 44455555666666666666433 44444555556666666555444 332
Q ss_pred CccccccCCCCCccccCC
Q 040607 372 KIPRWLGNLSVSEDVIMP 389 (629)
Q Consensus 372 ~~~~~~~~l~~L~~L~l~ 389 (629)
+-..+|.+|++|+.+++.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 333445555555555544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.5e-19 Score=191.49 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=132.5
Q ss_pred CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607 281 GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360 (629)
Q Consensus 281 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 360 (629)
..+++|+.|++++|++. .+|..+.. +++|++|++++|......+.. +..+...+..|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 34455555666665554 55555543 555555555444311111100 011123445566666777777
Q ss_pred cee-ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607 361 GLY-LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM 439 (629)
Q Consensus 361 ~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 439 (629)
.|+ ++.|.+ ..|..+.+.+|.+....+ ..|+.|++++|.+.+ +|. +.. +++|
T Consensus 413 ~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~--------l~~L 465 (567)
T 1dce_A 413 AVDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ--------LLLV 465 (567)
T ss_dssp HHCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG--------GTTC
T ss_pred cCcchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc--------cccC
Confidence 766 554433 233344444454442211 247888888888866 344 555 7888
Q ss_pred CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCC-CccccCCCCCCEEEccc
Q 040607 440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI-PPQLVELNALAVFSVAH 518 (629)
Q Consensus 440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~ 518 (629)
+.|+|++|.++ .+|..+..+++|+.|+|++|.++++ | .|.++++|+.|++++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 88888888888 7788888888888888888888874 4 6888888889999888888776 88888888888999988
Q ss_pred CcCcccCCC
Q 040607 519 NKLSGKTPD 527 (629)
Q Consensus 519 N~l~~~~~~ 527 (629)
|++++..|.
T Consensus 543 N~l~~~~~~ 551 (567)
T 1dce_A 543 NSLCQEEGI 551 (567)
T ss_dssp SGGGGSSSC
T ss_pred CcCCCCccH
Confidence 888877664
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.3e-19 Score=191.88 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=158.2
Q ss_pred ccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcE
Q 040607 259 HARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337 (629)
Q Consensus 259 ~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 337 (629)
...++|+.|++++|.+...+. ++.+++|+.|++++|......+.... .+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhccc
Confidence 567889999999999985544 78889999999976642212221111 11233455666777777877
Q ss_pred EE-ccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607 338 LQ-LDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416 (629)
Q Consensus 338 L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 416 (629)
|+ ++.|.+ ..|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 77 555533 235556666676653222 247788888888885 454 8888899999999998
Q ss_pred CCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccc-cccccCCCCCCEEECcCC
Q 040607 417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLSYN 495 (629)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N 495 (629)
+. .+|..+.. +++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..|.++++|+.|++++|
T Consensus 475 l~-~lp~~~~~--------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 475 LR-ALPPALAA--------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CC-CCCGGGGG--------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred cc-ccchhhhc--------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 87 56777766 8899999999999985 66 7889999999999999999887 888999999999999999
Q ss_pred cCCCCCCcc---ccCCCCCCEEEc
Q 040607 496 KLTGKIPPQ---LVELNALAVFSV 516 (629)
Q Consensus 496 ~l~~~~~~~---~~~l~~L~~L~l 516 (629)
++++..|.. +..+|+|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 998665532 334788998864
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.2e-17 Score=155.29 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=123.8
Q ss_pred ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 122 (629)
.+..++++.+.+++.. .+.++++|++|++++|.++ .++ .+..+++|++|++++|+++++++ +.++++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4557788888887543 5778899999999999887 676 58888999999999999988776 888999999999
Q ss_pred ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCC
Q 040607 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG 202 (629)
Q Consensus 123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (629)
++|.++ .++. +.. ++|++|++++|.+++ + ..+..+++|+.|++++|.+...
T Consensus 93 ~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~-~--~~l~~l~~L~~L~Ls~N~i~~~---------------------- 143 (263)
T 1xeu_A 93 NRNRLK-NLNG--IPS-ACLSRLFLDNNELRD-T--DSLIHLKNLEILSIRNNKLKSI---------------------- 143 (263)
T ss_dssp CSSCCS-CCTT--CCC-SSCCEEECCSSCCSB-S--GGGTTCTTCCEEECTTSCCCBC----------------------
T ss_pred CCCccC-CcCc--ccc-CcccEEEccCCccCC-C--hhhcCcccccEEECCCCcCCCC----------------------
Confidence 999988 6664 333 889999999988873 3 2477788888888888876432
Q ss_pred CCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc
Q 040607 203 VTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI 253 (629)
Q Consensus 203 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 253 (629)
+ .+..+++|++|++++|++.+. .. +..+++|+.|++++|.+...
T Consensus 144 ---~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 ---V-MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---G-GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEEEEEECC
T ss_pred ---h-HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCCCcccCC
Confidence 1 355566777777777777643 22 24556666666666665543
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=3.5e-15 Score=152.41 Aligned_cols=261 Identities=10% Similarity=0.094 Sum_probs=137.3
Q ss_pred CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCE
Q 040607 65 MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQE 144 (629)
Q Consensus 65 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~ 144 (629)
+..++.+.+..+ ++ .|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .++ .++..+|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 355555655542 33 5555556554 5666666554 555555566653 466666654 444 555556666666666
Q ss_pred EEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC
Q 040607 145 LKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN 224 (629)
Q Consensus 145 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~ 224 (629)
+++.+|.++ .++...|. +.+|+.+.+..+ +... -...|..+++|+.+++..+
T Consensus 185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I------------------------~~~aF~~~~~L~~l~l~~~- 236 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEI------------------------GSQAFLKTSQLKTIEIPEN- 236 (401)
T ss_dssp EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEE------------------------CTTTTTTCTTCCCEECCTT-
T ss_pred eecCCCcce-EechhhEe-ecccCEEEeCCc-hhee------------------------hhhHhhCCCCCCEEecCCC-
Confidence 666665555 44444444 355555555433 2211 1234555666666666553
Q ss_pred CCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-----c--cccCCCCCCccEEeccCCCCC
Q 040607 225 LRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-----V--HIPVGNMKSLSVLDLSKNRLI 297 (629)
Q Consensus 225 l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~--~~~~~~~~~L~~L~L~~n~l~ 297 (629)
+. .++...|.. .+|+.+.+ .+.++.+...+|.++++|+.+++.++.+. . ...|..+++|+.+++.+ .+.
T Consensus 237 l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 237 VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 33 333333344 56666666 34456666667777777777777665543 1 11155555555555552 233
Q ss_pred cccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccc-cCCceecccc
Q 040607 298 GKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCN-LFGGLYLSDN 367 (629)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n 367 (629)
.++...|.++.+|+.+++..+ ++.+...+|.++ +|+.+++.+|......+..|.+++ .++.|.+..+
T Consensus 313 -~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 313 -ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred -EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 455555555555555555433 444444555555 555555555554444444444442 3444444433
No 126
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=145.83 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=98.5
Q ss_pred ccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEE
Q 040607 259 HARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338 (629)
Q Consensus 259 ~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 338 (629)
..+++|+.|++++|.+.....+..+++|++|++++|.+. .++ . +..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445556666666666654444566667777777777554 332 2 2346777777777777776666777777778888
Q ss_pred EccCCcCcccCchhhhccccCCceeccccc-cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcC
Q 040607 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI 417 (629)
Q Consensus 339 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 417 (629)
++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 888777776667777777777777777776 44 333 466666666666666666642 2 456666666666666665
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.9e-15 Score=154.47 Aligned_cols=265 Identities=13% Similarity=0.144 Sum_probs=149.7
Q ss_pred CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292 (629)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~ 292 (629)
..++.+.+.. .++ .++...|..+ +|+.+.+.++ ++.+...+|.++ +|+.+.+..
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--------------------- 166 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--------------------- 166 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT---------------------
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC---------------------
Confidence 4556666553 233 2333333333 5666665543 555555555553 455555543
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK 372 (629)
Q Consensus 293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (629)
.+. .+....|.++++|+.+++.+|+++.+....|. ..+|+.+.+..+ +..+...+|.+|++|+.+++..+ +..+
T Consensus 167 --~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 167 --TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp --TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred --Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence 222 33333444444444444444444443333343 244444444422 33333444444444444444432 2222
Q ss_pred ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC-----CCCCCCcCCCccccCCCccCCCeeecccc
Q 040607 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF-----GSLPSCFNPFSIKQGKPLNSMSGLDLSCN 447 (629)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 447 (629)
...+|.+ .+|+.+.+. +.+.......|.++++|+.+++.+|.+. ...+.+|.+ +++|+.+++.+
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~--------c~~L~~l~l~~- 309 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG--------CPKLARFEIPE- 309 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT--------CTTCCEECCCT-
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC--------CccCCeEEeCC-
Confidence 2333433 445555552 2233344556677777777777666543 344455555 77888888874
Q ss_pred cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC-CCCEEEcccCcCc
Q 040607 448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN-ALAVFSVAHNKLS 522 (629)
Q Consensus 448 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 522 (629)
.++.....+|.+|++|+.+++..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 466566678888888888888654 777777888888 888888888888777777787774 6788888776654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.3e-15 Score=137.69 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=97.9
Q ss_pred CccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462 (629)
Q Consensus 383 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 462 (629)
.+.++++++.+... |..+ .++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDK--------LTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTT--------CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcC--------cccccEEECCCCcceEeChhHccCCCc
Confidence 45677777777643 3322 357888888888877666666555 678888888888887666666777888
Q ss_pred cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|++|++++|.+++.++..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+|
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888888887777777778888888888888876666566777888888888888877665
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.6e-16 Score=139.99 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=106.8
Q ss_pred hcccceeeccCcccC-ccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607 41 QCFIGFRAMDGTALD-KNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119 (629)
Q Consensus 41 ~~~l~~L~l~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 119 (629)
+..+++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356788888888887 667777788888888888888887 45 36888888888888888888877767777888889
Q ss_pred eecccccCCcccCc-cccCCCCCCCEEEccCcccccccCC---cccCCCCCCcEEECCCCcceeec
Q 040607 120 LNISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISL---GPLYNHSNLKIFDSENNQIYAQT 181 (629)
Q Consensus 120 L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~ 181 (629)
|++++|.++ .++. ..+..+++|++|++++|.++ ..+. ..+..+++|+.|++++|.+....
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 998888887 5542 37888888899999888887 3443 36778888888888888775543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=139.07 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=105.8
Q ss_pred cccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccc
Q 040607 385 DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH 464 (629)
Q Consensus 385 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 464 (629)
.++++++.+.. +|..+ .++|++|++++|.+. .+|..+.. +++|+.|++++|.+++..+..|.++++|+
T Consensus 14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~--------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSN--------YKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGG--------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhc--------ccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 34555555552 33322 246888888888875 44556655 78888999999999877778899999999
Q ss_pred eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 465 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
+|+|++|.++++++..|.++++|+.|++++|+++...+..|..+++|+.|++++|++.|.+.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99999999999999999999999999999999997777789999999999999999998776
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.9e-16 Score=137.43 Aligned_cols=134 Identities=20% Similarity=0.243 Sum_probs=106.5
Q ss_pred CCCccccCCCCccc-CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607 381 SVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459 (629)
Q Consensus 381 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 459 (629)
+.++.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+.. +++|+.|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------LPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------CSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------CCCCCEEECcCCcCchHHHHHHhh
Confidence 56777777777776 55666678888888888888887665 44444 788888999999888667777777
Q ss_pred ccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCCCC---ccccCCCCCCEEEcccCcCccc
Q 040607 460 LTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGKIP---PQLVELNALAVFSVAHNKLSGK 524 (629)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~ 524 (629)
+++|++|++++|.+++.+. ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+...
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8999999999999887643 678888999999999999986555 4788889999999999888743
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=2.3e-16 Score=174.09 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=98.2
Q ss_pred ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccC
Q 040607 324 HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQ 403 (629)
Q Consensus 324 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 403 (629)
..+..|..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44566677777777777777776 45555557777777777777777 66677777777777777777777 55777777
Q ss_pred CCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc-cceEeccCcccccccccccc
Q 040607 404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR-IHTLNVSHNKLTGLILSTFS 482 (629)
Q Consensus 404 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~ 482 (629)
+++|++|+|++|.+. .+|..+.. +++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--- 359 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGN--------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--- 359 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTS--------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred CCCCCEEECCCCCCC-ccChhhhc--------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---
Confidence 777777777777774 44555655 777777788877777666666654422 23467777777766554
Q ss_pred CCCCCCEEECcCC--------cCCCCCCccccCCCCCCEEEcccCcCc
Q 040607 483 NLKQTESLDLSYN--------KLTGKIPPQLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 483 ~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 522 (629)
.|+.|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 360 ---~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 ---ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---C-----------------------------------------CCC
T ss_pred ---ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3455666665 333334444455556666677777664
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.3e-15 Score=134.96 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=104.4
Q ss_pred cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607 406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK 485 (629)
Q Consensus 406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 485 (629)
+.+.++++++.+... |..+ .++|+.|++++|.+++..+..+..+++|++|++++|.++++++..|.+++
T Consensus 8 ~~~~l~~~~~~l~~~-p~~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSV-PTGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76 (177)
T ss_dssp ETTEEECCSSCCSSC-CTTC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEecCCCCccC-CCCC----------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence 356788888877543 3322 46788888888888866666778888888888888888887777788888
Q ss_pred CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++||+.| .|+
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-~~~ 141 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP 141 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec-cCc
Confidence 88888888888887777777888888888888888887666666778888888888888887 553
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.9e-16 Score=174.77 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=121.2
Q ss_pred EccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC
Q 040607 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418 (629)
Q Consensus 339 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 418 (629)
++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..++.|+.|+|++|.++ .+|..+..+++|++|+|++|.+.
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34445554 56788999999999999999998 66666778999999999999999 78888999999999999999998
Q ss_pred CCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCC-CCEEECcCCcC
Q 040607 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ-TESLDLSYNKL 497 (629)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l 497 (629)
.+|..+.. +++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+
T Consensus 284 -~lp~~~~~--------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 284 -SLPAELGS--------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp -SCCSSGGG--------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -ccChhhcC--------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 66888876 899999999999998 77888999999999999999999998887764422 23478999999
Q ss_pred CCCCCccccCCCCCCEEEcccC
Q 040607 498 TGKIPPQLVELNALAVFSVAHN 519 (629)
Q Consensus 498 ~~~~~~~~~~l~~L~~L~l~~N 519 (629)
++.+|. .|+.|++++|
T Consensus 354 ~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCCC------C---------
T ss_pred cCcCcc------ccceeEeecc
Confidence 988775 4566777777
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.5e-15 Score=132.97 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCCccccCCCCccc-CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607 381 SVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN 459 (629)
Q Consensus 381 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 459 (629)
++++.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+.. +++|+.|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------LNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------CCCCCEEECCCCcccchHHHHhhh
Confidence 45556666666665 44555566667777777777766554 33333 677777777777777556666666
Q ss_pred ccccceEeccCccccccc-cccccCCCCCCEEECcCCcCCCCCC---ccccCCCCCCEEEcc
Q 040607 460 LTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLSYNKLTGKIP---PQLVELNALAVFSVA 517 (629)
Q Consensus 460 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 517 (629)
+++|++|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.||++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777777777777642 3567777777777777777775544 466777777777765
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.60 E-value=1.7e-13 Score=140.71 Aligned_cols=299 Identities=14% Similarity=0.170 Sum_probs=187.1
Q ss_pred cCccchhhhcCCC-CCCEEEccCCcCCCccCccccCCCCCCcEEEccCCc---CccCCCcccCCCCCCCeeecccccCCc
Q 040607 54 LDKNFLQVIKSMT-SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN---LYGVPPWCLGNMTSLQVLNISSNQLTG 129 (629)
Q Consensus 54 ~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~ 129 (629)
++.+...+|.+++ .|+.+.+..+ ++ .|...+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~- 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT- 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence 4455567788885 5999999765 66 8888899999999999998763 77788889999999999988765 55
Q ss_pred ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhh
Q 040607 130 NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL 209 (629)
Q Consensus 130 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 209 (629)
.++..+|..+.+|+.+.+..+. . .+....|..+..|+.+.+..+- ... ....|. ...|+.+.+.......-...+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~~-~~I-~~~aF~-~~~l~~i~ip~~~~~i~~~af 201 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDSV-TAI-EERAFT-GTALTQIHIPAKVTRIGTNAF 201 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTTC-CEE-CTTTTT-TCCCSEEEECTTCCEECTTTT
T ss_pred eehhhhhhhhccccccccccee-e-eecccceeccccccccccccee-eEe-cccccc-ccceeEEEECCcccccccchh
Confidence 7887789999999999997653 3 4566789999999999998653 222 223333 357888888765554445667
Q ss_pred cCCCCCCEEEccCCCCCCCCChhHHhc-------------CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-
Q 040607 210 YHQHDLKHVNLSHINLRGEFPNWLSEN-------------NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ- 275 (629)
Q Consensus 210 ~~~~~L~~L~L~~n~l~~~~~~~~~~~-------------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~- 275 (629)
..+..++.......... .....++.. ...+..+.+. +.+..+...+|..+..|+.+.+..+...
T Consensus 202 ~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~I 279 (394)
T 4gt6_A 202 SECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVSI 279 (394)
T ss_dssp TTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCEE
T ss_pred hhccccceecccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccccee
Confidence 77777887776655433 111111111 1122222222 2334444556666666666666543322
Q ss_pred ccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhc
Q 040607 276 VHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN 355 (629)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 355 (629)
+...|.+++.|+.+.+. +.+. .++...|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred cCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 12225555666666664 2333 555555555666666666543 44444555556666666665433 44444555555
Q ss_pred cccCCceecccc
Q 040607 356 CNLFGGLYLSDN 367 (629)
Q Consensus 356 l~~L~~L~l~~n 367 (629)
|++|+.+++.++
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 666665555554
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.1e-15 Score=133.72 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=105.1
Q ss_pred cccceeeccCcccC-ccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCee
Q 040607 42 CFIGFRAMDGTALD-KNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120 (629)
Q Consensus 42 ~~l~~L~l~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 120 (629)
..+++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..|..+.++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56788999999887 678888889999999999999987 55 368899999999999999988677677789999999
Q ss_pred ecccccCCcccC-ccccCCCCCCCEEEccCcccccccCC---cccCCCCCCcEEECCC
Q 040607 121 NISSNQLTGNIS-SPPLKHLKSIQELKLSNNYFQIPISL---GPLYNHSNLKIFDSEN 174 (629)
Q Consensus 121 ~L~~n~l~~~i~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~ 174 (629)
++++|.++ .++ ...+..+++|++|++++|.+++ .+. ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 99999988 443 1378889999999999998874 333 4678888999888763
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=7.5e-15 Score=131.31 Aligned_cols=110 Identities=24% Similarity=0.234 Sum_probs=93.2
Q ss_pred cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607 406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK 485 (629)
Q Consensus 406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 485 (629)
+.+.+++++|.+.. +|..+ .++++.|++++|.+++..|..|..+++|++|+|++|+|+++++..|.+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~----------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI----------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCc-cCccC----------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 46789999988865 44433 46888999999999877788888999999999999999988888888999
Q ss_pred CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
+|++|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999999999997777778889999999999999988776
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=2.6e-14 Score=128.17 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=84.5
Q ss_pred ccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCC
Q 040607 407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ 486 (629)
Q Consensus 407 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 486 (629)
-+.+++++|.+. .+|..+ .++|+.|+|++|.+++..|..|..+++|++|+|++|+|+++++..|.++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~----------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI----------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCC-ccCCCc----------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 367888888774 344443 467888888888888777778888888888888888888877777788888
Q ss_pred CCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 487 TESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 487 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
|++|++++|+|++..+..|..+++|+.|++++|++.+.++
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888888886666668888888888888888887655
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.9e-14 Score=125.98 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.4
Q ss_pred CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607 438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517 (629)
Q Consensus 438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 517 (629)
..+.+++++|.++ .+|..+ .++|++|+|++|.|+++.+..|.++++|++|++++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4577899999888 566554 3788999999999988888888889999999999999987777778888999999999
Q ss_pred cCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 518 HNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 518 ~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
+|++++..+..+..+.+++.+++++|||.| .|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC-ACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT-TBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC-Cch
Confidence 999988777778888889999999999988 664
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.3e-14 Score=129.15 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=87.9
Q ss_pred ccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccc
Q 040607 377 LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLR 456 (629)
Q Consensus 377 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 456 (629)
+..+++|+.|++++|.+... +......++|++|++++|.+.+. ..+.. +++|+.|++++|.+++..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL--------LRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC--------CSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc--------CCCCCEEECCCCcccccCcch
Confidence 34455666666666666633 33222233777777777777654 33433 677777777777777444445
Q ss_pred cccccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCCCCc----cccCCCCCCEEEcccCcCc
Q 040607 457 IGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGKIPP----QLVELNALAVFSVAHNKLS 522 (629)
Q Consensus 457 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~ 522 (629)
+..+++|++|++++|.++..++ ..+..+++|+.|++++|+++ .+|. .+..+++|+.||+++|...
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5777788888888887765433 36777778888888888877 4454 3777788888888877665
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.2e-14 Score=129.26 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=112.0
Q ss_pred cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccc
Q 040607 400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS 479 (629)
Q Consensus 400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 479 (629)
.+..+++|+.|++++|.+... +. +.. ..++|+.|++++|.+++. ..+..+++|++|++++|.++++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~-------~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGA-------TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGG-------GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhh-------cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc
Confidence 466788999999999999754 43 322 145999999999999854 6788999999999999999988777
Q ss_pred cccCCCCCCEEECcCCcCCCCCCc--cccCCCCCCEEEcccCcCcccCCC----ccccccccCCCCCCCCCC
Q 040607 480 TFSNLKQTESLDLSYNKLTGKIPP--QLVELNALAVFSVAHNKLSGKTPD----WVAQFATFNGSSYDGNPF 545 (629)
Q Consensus 480 ~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~----~~~~~~~l~~l~~~~np~ 545 (629)
.|..+++|++|++++|+++ .+|. .+..+++|+.|++++|++... |. .+..+++++.+++++|+.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 7799999999999999997 5565 788999999999999999854 54 367889999999988863
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=2.1e-12 Score=132.50 Aligned_cols=336 Identities=10% Similarity=0.146 Sum_probs=186.5
Q ss_pred CCCccCccccCCCC-CCcEEEccCCcCccCCCcccCCCCCCCeeeccccc---CCcccCccccCCCCCCCEEEccCcccc
Q 040607 78 LNGTILDQGLCEFV-HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ---LTGNISSPPLKHLKSIQELKLSNNYFQ 153 (629)
Q Consensus 78 l~~~i~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~i~~~~l~~l~~L~~L~L~~n~l~ 153 (629)
++ .|.+.+|.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..|. ++ .|+..+|.++.+|+.+.+..+ ++
T Consensus 51 Vt-~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 51 VS-KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EE-EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred ee-EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence 45 67777898885 5999999865 888999999999999999998774 66 788889999999999888765 33
Q ss_pred cccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhH
Q 040607 154 IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL 233 (629)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 233 (629)
.++...|..+.+|+.+.+..+.. ......+..+..|+.+.+..+... +.........|+.+.+..+-. .+....
T Consensus 127 -~I~~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~~~~-I~~~aF~~~~l~~i~ip~~~~--~i~~~a 200 (394)
T 4gt6_A 127 -EIDSEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDSVTA-IEERAFTGTALTQIHIPAKVT--RIGTNA 200 (394)
T ss_dssp -EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCCCSEEEECTTCC--EECTTT
T ss_pred -eehhhhhhhhcccccccccceee--eecccceecccccccccccceeeE-eccccccccceeEEEECCccc--ccccch
Confidence 45667899999999999975432 222334455556666665533222 222111234455555544321 122222
Q ss_pred HhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcE
Q 040607 234 SENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRY 313 (629)
Q Consensus 234 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 313 (629)
+..+..++................+......... ...+.....+..+.+.. .+. .+....|.++..|+.
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYA---------LIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLAS 269 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE---------EEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCE
T ss_pred hhhccccceecccccccccccceeeccccccccc---------ccccccccccceEEcCC-cce-EcccceeeecccccE
Confidence 3444444444433322221111111000000000 00012223333444422 222 444555666667777
Q ss_pred EEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc
Q 040607 314 LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393 (629)
Q Consensus 314 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 393 (629)
+.+..+.. .+...+|.++++|+.+.+. +.++.....+|.+|.+|+.+++..+ ++.+-..+|.+|.+|+.+.+..+ +
T Consensus 270 i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 270 VKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp EECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred Eecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence 77665432 3455666667777777765 3344455566777777777777643 33344556777777777777543 4
Q ss_pred cCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607 394 EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449 (629)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 449 (629)
+..-..+|.++++|+.+++.++.... ..+.. +.+|+.+.+..+.+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~--------~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAIST--------DSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC--------CCCC----------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhc--------cCCCCEEEeCCCCE
Confidence 44555667777777777777654311 12222 55667776665543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.6e-13 Score=123.00 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=90.5
Q ss_pred CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH 518 (629)
Q Consensus 439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 518 (629)
-+.+++++|.++ .+|..+. ++|++|+|++|.++++++..|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888887 5666553 7889999999999888888888899999999999999876666778888999999999
Q ss_pred CcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607 519 NKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN 551 (629)
Q Consensus 519 N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~ 551 (629)
|++++..+..+..+++++.+++++|||.| .|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc-ccc
Confidence 99987777767888888899999999988 553
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5.7e-16 Score=142.74 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=64.2
Q ss_pred ccccCCceeccccccCCCccc------cccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCC
Q 040607 355 NCNLFGGLYLSDNHLSGKIPR------WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF 428 (629)
Q Consensus 355 ~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 428 (629)
....++.++++.+.+.+..|. .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.. +|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~- 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV- 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH-
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc-
Confidence 334444444444444433332 44444444444444444443 23 44455555555555555532 2332222
Q ss_pred ccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCC
Q 040607 429 SIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGK 500 (629)
Q Consensus 429 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 500 (629)
+++|+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++.
T Consensus 92 -------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 92 -------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 3455555555555552 23 34555555555555555554332 3455555555555555555443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=6.1e-16 Score=142.53 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=129.0
Q ss_pred ccCCCCCccccCCCCcccCCCCc------cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC
Q 040607 377 LGNLSVSEDVIMPNNHLEGPIPM------EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT 450 (629)
Q Consensus 377 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 450 (629)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.. +++|+.|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~--------l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG--------MENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH--------HTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc--------CCCCCEEECCCCCcc
Confidence 44567888889999988888776 89999999999999999977 45 5555 899999999999999
Q ss_pred CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC-ccccCCCCCCEEEcccCcCcccCCCc-
Q 040607 451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP-PQLVELNALAVFSVAHNKLSGKTPDW- 528 (629)
Q Consensus 451 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~- 528 (629)
.+|..+..+++|+.|++++|++++++ .+..+++|++|++++|+++...+ ..+..+++|++|++++|++.+.+|..
T Consensus 84 -~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 84 -KIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp -SCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred -cccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 67888888899999999999999853 58889999999999999985433 47889999999999999999887652
Q ss_pred ---------cccccccCCCCCCCCCC
Q 040607 529 ---------VAQFATFNGSSYDGNPF 545 (629)
Q Consensus 529 ---------~~~~~~l~~l~~~~np~ 545 (629)
+..+++++.++ +||.
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred chHHHHHHHHHhCCCcEEEC--Cccc
Confidence 56667777664 6664
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.6e-13 Score=132.72 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=106.7
Q ss_pred cEEEcccC-cCCCCCCCCcCCCccccCCCccCCCeeeccc-ccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607 408 QILDISKK-NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSC-NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK 485 (629)
Q Consensus 408 ~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 485 (629)
..++.+++ .+.+ +|. +.. +++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|+++++..|.+++
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~--------~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPG--------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCS--------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCc-cCC-CCC--------CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 45788888 7765 555 665 78999999996 999977778899999999999999999999999999999
Q ss_pred CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-CccccccccCCCCCCCCCCCC
Q 040607 486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQFATFNGSSYDGNPFLS 547 (629)
Q Consensus 486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~l~~~~np~~c 547 (629)
+|+.|+|++|+|++..+..|..++ |+.|++++|++.+.++ .++..+.......++.+.+.|
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C 142 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC 142 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCC
Confidence 999999999999977777777666 9999999999998877 445555444555666677777
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.3e-12 Score=131.68 Aligned_cols=103 Identities=21% Similarity=0.171 Sum_probs=66.1
Q ss_pred cccCCCC-cccCCCCccccCCCcccEEEccc-CcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607 385 DVIMPNN-HLEGPIPMEFCQLNFLQILDISK-KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462 (629)
Q Consensus 385 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 462 (629)
.++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..+.. +++|+.|+|++|.|++..|..|.++++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCCccceeCHHHhcCCcC
Confidence 3455555 5553 444 66666677777764 6666665555555 666777777777766666666666677
Q ss_pred cceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
|+.|+|++|+|+++++..|..++ |+.|++++|++.
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77777777777666666565554 677777777665
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=2.6e-10 Score=116.26 Aligned_cols=166 Identities=11% Similarity=0.118 Sum_probs=116.3
Q ss_pred hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcc--cccCCCCCCc
Q 040607 209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQV--HIPVGNMKSL 286 (629)
Q Consensus 209 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~~L 286 (629)
+.....+..+.+..... .+....+..+..++.+.+..+ +..+...+|..+..|+.+.+..+ ++. ...|..+.+|
T Consensus 190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 33445556655544322 222233456677887777543 56666778888888888888765 332 2237788889
Q ss_pred cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccc
Q 040607 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD 366 (629)
Q Consensus 287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (629)
+.+.+..+ +. .++...|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 266 ~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 98888654 44 678888888999999999988888888889999999999999755 6666778899999999998865
Q ss_pred cccCCCccccccCCCC
Q 040607 367 NHLSGKIPRWLGNLSV 382 (629)
Q Consensus 367 n~l~~~~~~~~~~l~~ 382 (629)
+ ++.+-..+|.++..
T Consensus 343 ~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 343 S-ITLIESGAFEGSSI 357 (379)
T ss_dssp T-CCEECTTTTTTSSC
T ss_pred c-cCEEchhHhhCCCC
Confidence 4 44344556666543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=6.5e-10 Score=113.32 Aligned_cols=314 Identities=11% Similarity=0.075 Sum_probs=185.8
Q ss_pred hcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCC
Q 040607 62 IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS 141 (629)
Q Consensus 62 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~ 141 (629)
+....+|+.+.+.. .++ .|+..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++..+|... +
T Consensus 42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 33445677777754 344 676667777777777777644 666777777776 5666666543 44 5665566554 6
Q ss_pred CCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEcc
Q 040607 142 IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLS 221 (629)
Q Consensus 142 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~ 221 (629)
|+.+.+.++- + .+....|..+ +++.+.+..+- ... ....+..+..++...+...............
T Consensus 115 L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~~i-~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 180 (379)
T 4h09_A 115 LDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-TTI-KDGIGYKAENLEKIEVSSNNKNYVAENYVLY--------- 180 (379)
T ss_dssp CSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-CEE-CSCTTTTCTTCCEEEECTTCSSEEEETTEEE---------
T ss_pred cccccCCCcc-c-cccccccccc-eeeeeecccee-ecc-ccchhcccccccccccccccceeecccceec---------
Confidence 7777776542 2 2333344443 34444443321 111 1122223333333333311111000000000
Q ss_pred CCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-ccccCCCCCCccEEeccCCCCCccc
Q 040607 222 HINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIPVGNMKSLSVLDLSKNRLIGKI 300 (629)
Q Consensus 222 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~L~~L~L~~n~l~~~~ 300 (629)
+.. ...... +.....+..+.+.. .........+..+..++.+.+..+-.. +...+..+..|+.+.+..+ ++ .+
T Consensus 181 -~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I 254 (379)
T 4h09_A 181 -NKN-KTILES-YPAAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SI 254 (379)
T ss_dssp -ETT-SSEEEE-CCTTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EE
T ss_pred -ccc-cceecc-cccccccccccccc-ceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-Ee
Confidence 000 001111 12334445554433 233445567777888888888655221 2233778888999998765 44 67
Q ss_pred chhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCC
Q 040607 301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL 380 (629)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 380 (629)
....|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ +..+-..+|.+|
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 7778888889999998754 56666778889999999999888887777888999999999998754 554556688889
Q ss_pred CCCccccCCCCcccCCCCccccCCC
Q 040607 381 SVSEDVIMPNNHLEGPIPMEFCQLN 405 (629)
Q Consensus 381 ~~L~~L~l~~n~l~~~~~~~~~~l~ 405 (629)
.+|+.+.+..+ ++..-..+|.++.
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999888764 4434445566554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=6.1e-13 Score=134.47 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=82.9
Q ss_pred ccceeeccCcccCccchhhhcCC-----CCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCccc-----C
Q 040607 43 FIGFRAMDGTALDKNFLQVIKSM-----TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCL-----G 112 (629)
Q Consensus 43 ~l~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~ 112 (629)
.+++|+|++|.++......+... ++|++|+|++|.+++.........+++|++|+|++|.+++.....+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 45566666666655433333222 4666666666665422111112234456666666666544333222 2
Q ss_pred CCCCCCeeecccccCCc----ccCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCcceeecCCCC
Q 040607 113 NMTSLQVLNISSNQLTG----NISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQIYAQTESHS 185 (629)
Q Consensus 113 ~l~~L~~L~L~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 185 (629)
..++|++|+|++|.+++ .++. .+..+++|++|+|++|.++.... ...+...++|+.|++++|.+.....
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--- 228 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--- 228 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH---
T ss_pred cCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH---
Confidence 34556666666666542 1111 23455566666666666542100 1233444556666666665532211
Q ss_pred cCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCC
Q 040607 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFP 230 (629)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 230 (629)
..++..+...+.|++|++++|.+++...
T Consensus 229 -----------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 229 -----------------LALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp -----------------HHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred -----------------HHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 0233445556677777777777664333
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=4.2e-12 Score=128.30 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=55.1
Q ss_pred CCccEEEccCCCCccccc------C-CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCccc-----
Q 040607 262 RHLTYLDVSDNFFQVHIP------V-GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK----- 329 (629)
Q Consensus 262 ~~L~~L~L~~n~~~~~~~------~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----- 329 (629)
+.|+.|++++|.++.... + ...++|++|++++|.+++.....+...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445555555555543221 1 1234666666666666543333333334556666666666654333332
Q ss_pred CCCCCCcEEEccCCcCccc----CchhhhccccCCceeccccccC
Q 040607 330 INLTNLWRLQLDGNHFIGE----IPESLSNCNLFGGLYLSDNHLS 370 (629)
Q Consensus 330 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 370 (629)
...++|++|++++|.++.. ++..+..+++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 2345566666666665432 2233344555666666665544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.1e-09 Score=109.61 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=63.7
Q ss_pred chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc--CCCcccEEEccc--CcCCCCC-CCC
Q 040607 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC--QLNFLQILDISK--KNIFGSL-PSC 424 (629)
Q Consensus 350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~-~~~ 424 (629)
...+..+|+|+.|++++|.-. .++. +. +++|+.|++..|.+.......+. .+|+|+.|+|+. |...+.. ...
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344555666666666655211 1121 22 45666666665554322111222 456677776642 1111100 000
Q ss_pred cCCCccccCCCccCCCeeecccccCCCCCcccc---ccccccceEeccCcccccccc----ccccCCCCCCEEECcCCcC
Q 040607 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI---GNLTRIHTLNVSHNKLTGLIL----STFSNLKQTESLDLSYNKL 497 (629)
Q Consensus 425 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l 497 (629)
+.. ......+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+++... ..+..+++|+.|++++|.+
T Consensus 242 l~~--~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 242 FRP--LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TGG--GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHH--HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 000 0011124566666666665542222222 134566666666666554321 2223345566666666655
Q ss_pred C
Q 040607 498 T 498 (629)
Q Consensus 498 ~ 498 (629)
+
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=7e-09 Score=103.72 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=28.6
Q ss_pred cCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCcccc--CCCCCCCEEEcc
Q 040607 87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPL--KHLKSIQELKLS 148 (629)
Q Consensus 87 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l--~~l~~L~~L~L~ 148 (629)
+..+++|+.|++++|.-..+++ +. +++|++|++..+.+...... .+ ..+|+|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEe
Confidence 3455666666666652112222 22 56666666666655421111 12 245666666664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=5.2e-08 Score=87.82 Aligned_cols=111 Identities=22% Similarity=0.179 Sum_probs=68.0
Q ss_pred cccceeeccCc-ccCcc----chhhhcCCCCCCEEEccCCcCCCcc---CccccCCCCCCcEEEccCCcCccCC----Cc
Q 040607 42 CFIGFRAMDGT-ALDKN----FLQVIKSMTSLKLLSLSNSRLNGTI---LDQGLCEFVHLQELHVDHNNLYGVP----PW 109 (629)
Q Consensus 42 ~~l~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~L~~L~L~~n~i~~~~----~~ 109 (629)
+.+++|+|++| .+... +...+...++|++|+|++|.+.+.- ....+...++|++|+|++|.|.+.. ..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 35666666666 66543 3444556677777777777765211 0113445567777777777775432 23
Q ss_pred ccCCCCCCCeeec--ccccCCcc----cCccccCCCCCCCEEEccCcccc
Q 040607 110 CLGNMTSLQVLNI--SSNQLTGN----ISSPPLKHLKSIQELKLSNNYFQ 153 (629)
Q Consensus 110 ~~~~l~~L~~L~L--~~n~l~~~----i~~~~l~~l~~L~~L~L~~n~l~ 153 (629)
++...+.|++|++ ++|.+.+. +.. .+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 5566777888888 67777632 222 4555678888888888765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.6e-07 Score=88.88 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=37.8
Q ss_pred CCCCCcEEEccCCcCccCC--CcccCCCCCCCeeecccccCCcccCccccCCCC--CCCEEEccCcccccccCC------
Q 040607 89 EFVHLQELHVDHNNLYGVP--PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK--SIQELKLSNNYFQIPISL------ 158 (629)
Q Consensus 89 ~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~------ 158 (629)
++++|++|+|++|+++++. +..+..+++|+.|+|++|.++ .+. .+..++ +|++|++++|.+.+..+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cch--hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3455555555555555433 123344555555555555555 221 222222 555555555555432221
Q ss_pred cccCCCCCCcEEE
Q 040607 159 GPLYNHSNLKIFD 171 (629)
Q Consensus 159 ~~~~~l~~L~~L~ 171 (629)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244555555555
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=5.1e-07 Score=81.26 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=60.0
Q ss_pred cCCCccEEEccCC-CCccccc------CCCCCCccEEeccCCCCCcccchhhh---hCCCCCcEEEccCcccccc----c
Q 040607 260 ARRHLTYLDVSDN-FFQVHIP------VGNMKSLSVLDLSKNRLIGKIPERLA---MGCFSLRYLVLSNNKMKGH----I 325 (629)
Q Consensus 260 ~~~~L~~L~L~~n-~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~----~ 325 (629)
..+.|++|+|++| .+..... +...++|++|+|++|.+.+.....+. ...+.|++|++++|.+... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455566666665 5543211 44556677777777776532221111 1245677777777766543 2
Q ss_pred CcccCCCCCCcEEEc--cCCcCcccC----chhhhccccCCceecccccc
Q 040607 326 FSKKINLTNLWRLQL--DGNHFIGEI----PESLSNCNLFGGLYLSDNHL 369 (629)
Q Consensus 326 ~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l 369 (629)
...+...++|++|++ ++|.+.... ...+...++|++|++++|.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334445566777777 666665432 23444456666666666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=8.5e-07 Score=83.88 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=29.9
Q ss_pred cccccceEeccCccccccc--cccccCCCCCCEEECcCCcCCCCCCccccCCC--CCCEEEcccCcCcccCC
Q 040607 459 NLTRIHTLNVSHNKLTGLI--LSTFSNLKQTESLDLSYNKLTGKIPPQLVELN--ALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 459 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~ 526 (629)
.+++|+.|+|++|+|+++. +..+..+++|+.|+|++|+|++. +.+..+. +|+.|++++|++.+..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3445555555555554422 23334455555555555555432 1222222 45555555555554333
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=6.2e-07 Score=78.49 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCEEEccCCcCCCccCccccCCCCCCcEEEccCCc-CccCCCcccCCC----CCCCeeeccccc-CCcccCccccCCCC
Q 040607 67 SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN-LYGVPPWCLGNM----TSLQVLNISSNQ-LTGNISSPPLKHLK 140 (629)
Q Consensus 67 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~i~~~~l~~l~ 140 (629)
+|++||+++|.+++.-. ..+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.- -..+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 35555555555442111 134455555555555552 332222223332 245555555553 44211 11344555
Q ss_pred CCCEEEccCc
Q 040607 141 SIQELKLSNN 150 (629)
Q Consensus 141 ~L~~L~L~~n 150 (629)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5666666555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.3e-06 Score=76.50 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=26.5
Q ss_pred ccCCCeeeccccc-CCCCCccccccc----cccceEeccCc-cccccccccccCCCCCCEEECcCC
Q 040607 436 LNSMSGLDLSCNK-LTGEIPLRIGNL----TRIHTLNVSHN-KLTGLILSTFSNLKQTESLDLSYN 495 (629)
Q Consensus 436 ~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N 495 (629)
+++|+.|+|++|. +++..-..+..+ ++|++|+|++| +||+.....+..+++|++|+++++
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 4555555555553 332211222221 24555555554 244443334444555555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.92 E-value=1.1e-05 Score=67.51 Aligned_cols=60 Identities=27% Similarity=0.251 Sum_probs=44.9
Q ss_pred ceEeccCcccc--ccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607 464 HTLNVSHNKLT--GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526 (629)
Q Consensus 464 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 526 (629)
..++.+++.++ .+ |..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+.
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36788888887 44 43333 468888888888887777778888888888888888887665
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.58 E-value=8.1e-05 Score=62.07 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=31.5
Q ss_pred eeecccccCC-CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607 441 GLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498 (629)
Q Consensus 441 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 498 (629)
.++.+++.++ ..+|..+ .++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666654 2333322 134666666666666666666666666666666666553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00035 Score=62.29 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=56.7
Q ss_pred ccceeeccCc-ccCcc----chhhhcCCCCCCEEEccCCcCCCccC---ccccCCCCCCcEEEccCCcCccCCC----cc
Q 040607 43 FIGFRAMDGT-ALDKN----FLQVIKSMTSLKLLSLSNSRLNGTIL---DQGLCEFVHLQELHVDHNNLYGVPP----WC 110 (629)
Q Consensus 43 ~l~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i~---~~~~~~l~~L~~L~L~~n~i~~~~~----~~ 110 (629)
.|++|+|+++ .|... +.+++..-+.|+.|+|++|.+.+.-. .+++..-+.|++|+|+.|.|..... ++
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4556666653 55432 34455555666666666666641100 0123344566777777766643322 23
Q ss_pred cCCCCCCCeeeccccc---CCc----ccCccccCCCCCCCEEEccCccc
Q 040607 111 LGNMTSLQVLNISSNQ---LTG----NISSPPLKHLKSIQELKLSNNYF 152 (629)
Q Consensus 111 ~~~l~~L~~L~L~~n~---l~~----~i~~~~l~~l~~L~~L~L~~n~l 152 (629)
+..-+.|++|+|++|. +.+ .+.. .+..-+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 4555567777776542 221 1111 344556777777776643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.75 E-value=0.0012 Score=58.86 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCccEEEccCC-CCccccc------CCCCCCccEEeccCCCCCcccchhhh---hCCCCCcEEEccCcccccccC----c
Q 040607 262 RHLTYLDVSDN-FFQVHIP------VGNMKSLSVLDLSKNRLIGKIPERLA---MGCFSLRYLVLSNNKMKGHIF----S 327 (629)
Q Consensus 262 ~~L~~L~L~~n-~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~----~ 327 (629)
+.|+.|+|++| .+..... +...+.|+.|+|++|.+.+.....+. ..-+.|++|+|++|.|..... .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555553 4432211 44455666666666666533222111 123566666666666653222 2
Q ss_pred ccCCCCCCcEEEccCC---cCccc----CchhhhccccCCceeccccc
Q 040607 328 KKINLTNLWRLQLDGN---HFIGE----IPESLSNCNLFGGLYLSDNH 368 (629)
Q Consensus 328 ~~~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~ 368 (629)
.+..-+.|+.|++++| .+... +.+.+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3344455777777654 22211 23344455566666665443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.69 E-value=0.95 Score=35.04 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=20.9
Q ss_pred CccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccC
Q 040607 103 LYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149 (629)
Q Consensus 103 i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~ 149 (629)
++.+...+|.+|.+|+.+.+..+ ++ .|...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 34444444555555555554443 22 44444455555555554433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.90 E-value=3.9 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=28.4
Q ss_pred ccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc
Q 040607 81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125 (629)
Q Consensus 81 ~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 125 (629)
.|...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 555556666777777666654 55566666777777777766553
Done!