Query 040608
Match_columns 314
No_of_seqs 85 out of 87
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o27_A Putative uncharacterize 28.3 32 0.0011 26.2 2.3 30 180-214 21-50 (68)
2 2zz8_A LIPL32 protein; outer-m 22.9 64 0.0022 29.5 3.6 34 158-217 181-214 (241)
3 1mvf_D MAZE protein, PEMI-like 20.8 85 0.0029 23.1 3.4 27 184-215 13-39 (82)
4 4g6v_B CDII; tRNAse, toxin, im 18.8 61 0.0021 26.5 2.3 24 194-217 47-70 (111)
5 1yfb_A Transition state regula 16.6 87 0.003 22.5 2.5 27 184-215 22-48 (59)
6 2l66_A SSO7C4, transcriptional 13.0 76 0.0026 21.8 1.4 26 185-215 13-38 (53)
7 2ej9_A Putative biotin ligase; 10.6 1.7E+02 0.0057 25.8 3.1 42 126-168 5-54 (237)
8 1m5a_B Insulin B chain; alpha 10.4 98 0.0033 20.1 1.1 7 25-31 24-30 (30)
9 1mkf_A M3; decoy receptor, PSI 8.2 3.9E+02 0.013 25.6 4.7 32 101-133 103-134 (382)
10 4db1_A Myosin-7; S1DC, cardiac 8.1 2.5E+02 0.0087 29.6 3.7 50 206-269 118-178 (783)
No 1
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=28.31 E-value=32 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=26.2
Q ss_pred eeeEEEeeCCCCCCchhhhhhhCCCccccEEEEee
Q 040608 180 THLIYKLEFPPEDMENETQESLNIEHEGSFLIQIK 214 (314)
Q Consensus 180 tHL~Y~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvK 214 (314)
-|=.|.|++|. ||-++|||+..--|.+.+-
T Consensus 21 g~etyYInIPa-----eI~kaLgIk~gD~fel~ve 50 (68)
T 3o27_A 21 GHTTFYLLIPK-----DIAEALDIKPDDTFILNME 50 (68)
T ss_dssp -CCCEEEEECH-----HHHHHTTCCTTCCEEEEEE
T ss_pred CceEEEEeCcH-----HHHHHhCCCCCCEEEEEEe
Confidence 57789999995 8999999999999998875
No 2
>2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A {Leptospira interrogans} PDB: 3frl_A* 2wfk_A
Probab=22.86 E-value=64 Score=29.52 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.3
Q ss_pred CcccccceeEEEEecCCCCccceeeEEEeeCCCCCCchhhhhhhCCCccccEEEEeeCCC
Q 040608 158 PARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPD 217 (314)
Q Consensus 158 ~Arp~gEGvYaI~~~~~~~~~~tHL~Y~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvKNP~ 217 (314)
++.++-+|+|+|.-|. = ..||| +|||+.+|--|-
T Consensus 181 ~~KaLvrGlYRI~FTt-y-----------------KtgeV--------kGSF~A~Vg~~~ 214 (241)
T 2zz8_A 181 TKKLLVRGLYRISFTT-Y-----------------KPGEV--------KGSFVASVGLLF 214 (241)
T ss_dssp GGGSBCSEEEEEEEEC-C-----------------TTCCS--------CEEEEEEEEEEC
T ss_pred hHHHHhhheeeEeeEE-e-----------------eccce--------eeEEEEEecccC
Confidence 3678899999999763 1 34666 599999999875
No 3
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=20.77 E-value=85 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred EEeeCCCCCCchhhhhhhCCCccccEEEEeeC
Q 040608 184 YKLEFPPEDMENETQESLNIEHEGSFLIQIKK 215 (314)
Q Consensus 184 Y~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvKN 215 (314)
+.++||. ++.+.|||++-..+.|.+.|
T Consensus 13 ~~v~iPk-----~~~~~lgl~~gd~v~i~~~~ 39 (82)
T 1mvf_D 13 PAVRIPA-----TLMQALNLNIDDEVKIDLVD 39 (82)
T ss_dssp EEEECCH-----HHHHHTTCCTTCBEEEEEET
T ss_pred cEEEECH-----HHHHHcCCCCCCEEEEEEEC
Confidence 8899995 89999999988788887764
No 4
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=18.77 E-value=61 Score=26.45 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=22.1
Q ss_pred chhhhhhhCCCccccEEEEeeCCC
Q 040608 194 ENETQESLNIEHEGSFLIQIKKPD 217 (314)
Q Consensus 194 ~GevQ~~lgi~~~gSFIiqvKNP~ 217 (314)
.-++-++||+.+++-|.|+|.|-.
T Consensus 47 ~keIA~EfGl~~eS~F~Isv~DKt 70 (111)
T 4g6v_B 47 LKEIAAEHGLVAESFFLVSLNDKN 70 (111)
T ss_dssp HHHHHHHTTCCCSEEEEEEECCGG
T ss_pred HHHHHHHhCCCccceEEEEEcCCC
Confidence 578999999999999999999876
No 5
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=16.64 E-value=87 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=21.9
Q ss_pred EEeeCCCCCCchhhhhhhCCCccccEEEEeeC
Q 040608 184 YKLEFPPEDMENETQESLNIEHEGSFLIQIKK 215 (314)
Q Consensus 184 Y~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvKN 215 (314)
+.++||. ++-+.|||++-..+.|.+.+
T Consensus 22 GqItIPk-----eiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 22 GRVVIPI-----ELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp CEEECCH-----HHHHHTTCCTTCEEEEEEET
T ss_pred CEEEeCH-----HHHHHcCCCCCCEEEEEEEC
Confidence 3588995 89999999988887777754
No 6
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=12.99 E-value=76 Score=21.81 Aligned_cols=26 Identities=8% Similarity=0.334 Sum_probs=21.3
Q ss_pred EeeCCCCCCchhhhhhhCCCccccEEEEeeC
Q 040608 185 KLEFPPEDMENETQESLNIEHEGSFLIQIKK 215 (314)
Q Consensus 185 ~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvKN 215 (314)
.+++|. ++-+.|||++-..+.|.+.+
T Consensus 13 qi~IPk-----~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 13 QVTIPA-----KVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp CBCCCH-----HHHHHSCCCTTCEEEEEECS
T ss_pred EEEeCH-----HHHHHcCcCCCCEEEEEEEC
Confidence 478885 89999999987778777754
No 7
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=10.58 E-value=1.7e+02 Score=25.76 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=31.7
Q ss_pred EEecccCCHHHHHHhhc--------CCcccccCCccccCCCcccccceeEE
Q 040608 126 FVEMVTTKVEDVKVALA--------GEEYDTSTRGHRRNLPARAVGEGVYR 168 (314)
Q Consensus 126 fVe~~~~~~~~lk~~L~--------~~~YeTkTrG~Rh~p~Arp~gEGvYa 168 (314)
+.+.++++-+.+++.+. -.++.|+-||.|-....-|.| |.|.
T Consensus 5 ~~~~~~STn~~~~~~~~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G-~l~~ 54 (237)
T 2ej9_A 5 HLSEIDSTNDYAKELAKEGKRNFIVLADKQNNGKGRWGRVWYSDEG-GLYF 54 (237)
T ss_dssp EESCBSCHHHHHHHHHHTTCCSEEEEESCBSSCBCGGGCBCCCCTT-SEEE
T ss_pred EEeeCCCHHHHHHHHHhCCCCCEEEEECccCCCCCCCCCeeeCCCC-CeEE
Confidence 45566666666666432 257899999999999999999 9885
No 8
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=10.39 E-value=98 Score=20.11 Aligned_cols=7 Identities=71% Similarity=1.545 Sum_probs=5.6
Q ss_pred EEeccCC
Q 040608 25 FFYRPKV 31 (314)
Q Consensus 25 FFyRpkV 31 (314)
|||.||.
T Consensus 24 F~~~p~~ 30 (30)
T 1m5a_B 24 FFYTPKA 30 (30)
T ss_dssp EEECCCC
T ss_pred cccCCCC
Confidence 8999973
No 9
>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} SCOP: b.116.1.1 PDB: 1ml0_A 2nyz_A 2nz1_A
Probab=8.19 E-value=3.9e+02 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=24.2
Q ss_pred ceeeEEEeCccCCCCCCCCCCCeeEEEecccCC
Q 040608 101 LLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTK 133 (314)
Q Consensus 101 ~~~Rli~lgKK~LP~~~~~~~rf~gfVe~~~~~ 133 (314)
...|++++-----|.-.- .++|||+|++++-+
T Consensus 103 ~~vrVLV~AEs~~P~~~~-~~~~~A~~~m~T~~ 134 (382)
T 1mkf_A 103 DLVRVLVVAESNTPEETP-EEEFYAYVELQTEL 134 (382)
T ss_dssp CEEEEEEEEECCCCSSCC-SSCCCEEEEEECSS
T ss_pred ceEEEEEEecCCCCCCCc-hhhhhhhheeeeee
Confidence 378999998777776432 36899999998654
No 10
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=8.11 E-value=2.5e+02 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=35.8
Q ss_pred cccEEEEeeCCCCCCCCcccCCccccCCCCchhHHHhhCCCCccCCCCC-----------CCCCCCCceEEEEec
Q 040608 206 EGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPP-----------DFLNYEGCEFLLISA 269 (314)
Q Consensus 206 ~gSFIiqvKNP~~~~~~~~~gl~~~r~p~yP~ei~~~Fg~~Rw~p~~pP-----------~~LDY~gaqlLLIga 269 (314)
-|+++|+| ||.. ..|.|-+++++.|.+.+.-.+. | .++....-|-+||..
T Consensus 118 ~G~iLvav-NPyk------------~l~iY~~~~~~~Y~g~~~~~~p-PHifaiA~~Ay~~m~~~~~nQsIiiSG 178 (783)
T 4db1_A 118 SGLFCVTV-NPYK------------WLPVYTPEVVAAYRGKKRSEAP-PHIFSISDNAYQYMLTDRENQSILITG 178 (783)
T ss_dssp ETTEEEEE-CCSS------------CCSCSSHHHHHHHTTCCGGGSC-CCHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred cCceeEec-CCCc------------cCCCCCHHHHHHhcCCCcCCCC-chhhHHHHHHHHHHHhhCCCceEEEeC
Confidence 58888888 9982 3468999999999987766553 5 344555667666654
Done!