Query 040608
Match_columns 314
No_of_seqs 85 out of 87
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 16:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040608.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040608hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1se9a_ d.15.1.1 (A:) Hypothet 15.0 45 0.0032 24.7 2.6 29 23-52 56-95 (101)
2 d1v2ya_ d.15.1.1 (A:) Ubiquiti 14.9 51 0.0037 23.9 2.9 35 19-53 59-98 (105)
3 d1wj4a_ d.15.1.2 (A:) Hypothet 9.8 1.7E+02 0.012 21.5 4.6 82 100-217 41-122 (124)
4 d1muga_ c.18.1.2 (A:) G:T/U mi 9.4 85 0.0062 23.7 2.7 19 254-273 3-21 (165)
5 d1wy8a1 d.15.1.1 (A:8-83) Ubiq 8.5 1.2E+02 0.0089 20.4 3.0 31 21-52 41-76 (76)
6 d2j2za2 b.7.2.1 (A:125-217) Pa 7.9 50 0.0036 23.6 0.6 19 198-217 5-23 (93)
7 d1mkfa_ b.116.1.1 (A:) Viral c 6.9 2.3E+02 0.017 24.7 4.7 32 101-133 92-123 (371)
8 d1wiaa_ d.15.1.1 (A:) Ubiquiti 6.8 2.1E+02 0.015 20.1 3.8 21 21-41 43-63 (95)
9 d1ryqa_ g.41.9.3 (A:) putative 6.5 1.3E+02 0.0096 20.7 2.3 21 194-214 47-67 (67)
10 g1mso.1 g.1.1.1 (B:,A:) Insuli 5.8 95 0.0069 20.7 1.1 9 25-33 24-32 (51)
No 1
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.02 E-value=45 Score=24.72 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=21.7
Q ss_pred EEEEeccCCCCCCCCChhhh-----------heeeEEEeec
Q 040608 23 IFFFYRPKVGKEEAHSSDDV-----------QRLYLVLRPE 52 (314)
Q Consensus 23 IYFFyRpkV~~ee~~s~dDV-----------qR~yivLrP~ 52 (314)
.=++|++|+- ++.+.+.|- --+|+|+||-
T Consensus 56 qRLIf~Gk~L-~D~~tL~dy~i~~g~~~~~~~tmHlVvrpp 95 (101)
T d1se9a_ 56 VKLISAGKVL-ENSKTVKDYRSPVSNLAGAVTTMHVIIQAP 95 (101)
T ss_dssp EEEEETTEEC-CTTSBGGGGSCCTTSCTTCCEEEEEEECCC
T ss_pred EEEEECCeEe-cCCCCHHHcCCCCCCcCCCceEEEEEeCCC
Confidence 4578999976 455777763 3699999994
No 2
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.90 E-value=51 Score=23.89 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=26.9
Q ss_pred eeceEEEEeccCCCCCCCCChhhh-----heeeEEEeecC
Q 040608 19 ERGEIFFFYRPKVGKEEAHSSDDV-----QRLYLVLRPES 53 (314)
Q Consensus 19 EKG~IYFFyRpkV~~ee~~s~dDV-----qR~yivLrP~~ 53 (314)
+...++.+|+.|+-.++..++.|. ...|||+|+..
T Consensus 59 ~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r~~~ 98 (105)
T d1v2ya_ 59 VWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp HHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECSCS
T ss_pred cccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEecCC
Confidence 345789999999999988888763 45677888763
No 3
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=1.7e+02 Score=21.48 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=48.9
Q ss_pred cceeeEEEeCccCCCCCCCCCCCeeEEEecccCCHHHHHHhhcCCcccccCCccccCCCcccccceeEEEEecCCCCccc
Q 040608 100 ELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMH 179 (314)
Q Consensus 100 ~~~~Rli~lgKK~LP~~~~~~~rf~gfVe~~~~~~~~lk~~L~~~~YeTkTrG~Rh~p~Arp~gEGvYaI~~~~~~~~~~ 179 (314)
...|||.+ +||+-.+ ...-- ....++++|.+++....|. ...|.|.+.- +++.
T Consensus 41 ~p~~~l~i----RlPdG~r----~~r~F-~~~~tl~~l~~~v~~~~~~----------------~~~~~L~~~f-Pr~~- 93 (124)
T d1wj4a_ 41 GPKAQLML----RYPDGKR----EQITL-PEQAKLLALVKHVQSKGYP----------------NERFELLTNF-PRRK- 93 (124)
T ss_dssp SCEEEEEE----ECTTSCE----EEEEE-ETTSCHHHHHHHHHHHHCC----------------TTTEEEECSS-SCCE-
T ss_pred CCceEEEE----ECCCCCE----EEEEe-CCCCcHHHHHHHHHhcccC----------------CcceEEeecc-cccc-
Confidence 34677744 7998543 22222 3468999999987543322 2348888764 3321
Q ss_pred eeeEEEeeCCCCCCchhhhhhhCCCccccEEEEeeCCC
Q 040608 180 THLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPD 217 (314)
Q Consensus 180 tHL~Y~Lt~P~~~e~GevQ~~lgi~~~gSFIiqvKNP~ 217 (314)
|+ +. +...--+++||.+++..+|+=+-|.
T Consensus 94 ------l~-~~--d~~~TL~e~gL~P~~~L~vee~~~~ 122 (124)
T d1wj4a_ 94 ------LS-HL--DYDITLQEAGLCPQETVFVQESGPS 122 (124)
T ss_dssp ------ET-SS--CSSSCTTTTTCCSSBCCEEEECCST
T ss_pred ------cc-cc--cccCcHHHcCCCCCCEEEEEecCCC
Confidence 11 11 2334457899999999999865443
No 4
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=9.37 E-value=85 Score=23.69 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.7
Q ss_pred CCCCCCCCceEEEEeccCch
Q 040608 254 PDFLNYEGCEFLLISASDDI 273 (314)
Q Consensus 254 P~~LDY~gaqlLLIga~~~~ 273 (314)
||.|+ |||.+|+||..-+.
T Consensus 3 ~d~l~-p~~~vlivG~~PG~ 21 (165)
T d1muga_ 3 EDILA-PGLRVVFCGINPGL 21 (165)
T ss_dssp CCBCC-TTCSEEEEESSCCH
T ss_pred CCccC-CCCCEEEEeCCCCH
Confidence 35665 89999999987643
No 5
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.53 E-value=1.2e+02 Score=20.36 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCCCCCCChhhh-----heeeEEEeec
Q 040608 21 GEIFFFYRPKVGKEEAHSSDDV-----QRLYLVLRPE 52 (314)
Q Consensus 21 G~IYFFyRpkV~~ee~~s~dDV-----qR~yivLrP~ 52 (314)
-...++|.+|+- ++..++.|. .-.++||||.
T Consensus 41 ~~qrLi~~Gk~L-~d~~tL~~y~I~~~s~i~lv~rpd 76 (76)
T d1wy8a1 41 ECQRLFYRGKQL-ENGYTLFDYDVGLNDIIQLLVRPD 76 (76)
T ss_dssp TTEEEEETTEEC-CSSSBHHHHTCCTTCEEEEEECCC
T ss_pred hhcEEEEEeeEe-cCCCCHHHcCCCCCCEEEEEEccC
Confidence 346789999984 556777763 4567888873
No 6
>d2j2za2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=50 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.9
Q ss_pred hhhhCCCccccEEEEeeCCC
Q 040608 198 QESLNIEHEGSFLIQIKKPD 217 (314)
Q Consensus 198 Q~~lgi~~~gSFIiqvKNP~ 217 (314)
|+.|-+..+|. -|.++||.
T Consensus 5 Q~kL~~~~~g~-~l~v~NpT 23 (93)
T d2j2za2 5 QDQLILNKVSG-GYRIENPT 23 (93)
T ss_dssp GGGCEEEEETT-EEEEEECS
T ss_pred hhcEEEEEeCC-EEEEECCC
Confidence 78899999998 58999999
No 7
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}
Probab=6.95 E-value=2.3e+02 Score=24.73 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=24.4
Q ss_pred ceeeEEEeCccCCCCCCCCCCCeeEEEecccCC
Q 040608 101 LLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTK 133 (314)
Q Consensus 101 ~~~Rli~lgKK~LP~~~~~~~rf~gfVe~~~~~ 133 (314)
...|++++-----|... ..++|||+|++++-+
T Consensus 92 ~~vrVLV~AEs~tpee~-P~~~~~A~~~m~T~~ 123 (371)
T d1mkfa_ 92 DLVRVLVVAESNTPEET-PEEEFYAYVELQTEL 123 (371)
T ss_dssp CEEEEEEEEECCCCSSC-CSSCCCEEEEEECSS
T ss_pred ceEEEEEEecCCCCCCC-hHHHHhhhhheeeee
Confidence 37899999887777643 235899999998654
No 8
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.83 E-value=2.1e+02 Score=20.08 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=16.8
Q ss_pred ceEEEEeccCCCCCCCCChhh
Q 040608 21 GEIFFFYRPKVGKEEAHSSDD 41 (314)
Q Consensus 21 G~IYFFyRpkV~~ee~~s~dD 41 (314)
..+=++|++|+-.++.+++.|
T Consensus 43 ~~qrLi~~Gk~L~dd~~tL~~ 63 (95)
T d1wiaa_ 43 SQMKLIYQGRLLQDPARTLSS 63 (95)
T ss_dssp TTCEEEETTEECCCSSCBTTT
T ss_pred ceeEEEECCEEcccCCCCHHH
Confidence 345688999998888888877
No 9
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=6.48 E-value=1.3e+02 Score=20.69 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=19.2
Q ss_pred chhhhhhhCCCccccEEEEee
Q 040608 194 ENETQESLNIEHEGSFLIQIK 214 (314)
Q Consensus 194 ~GevQ~~lgi~~~gSFIiqvK 214 (314)
-.+|=+.|||+..|.|-|+||
T Consensus 47 ~S~iAk~l~i~~pG~YAlkVr 67 (67)
T d1ryqa_ 47 NSEIAKKIGAKVPGKYAIRVR 67 (67)
T ss_dssp GCHHHHHHTCCSCEEEEEEEC
T ss_pred HHHHHHHcCCCCCCeEEEEeC
Confidence 468999999999999999997
No 10
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=95 Score=20.70 Aligned_cols=9 Identities=67% Similarity=1.364 Sum_probs=5.8
Q ss_pred EEeccCCCC
Q 040608 25 FFYRPKVGK 33 (314)
Q Consensus 25 FFyRpkV~~ 33 (314)
|||+||-++
T Consensus 24 f~~~p~~GI 32 (51)
T g1mso.1 24 FFYTPKTGI 32 (51)
T ss_dssp EEECCCC--
T ss_pred cccCCCCCh
Confidence 688998764
Done!