BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040611
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 24/204 (11%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
A T G T LHIA R GHV+ V L+ + + +A G T LH
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEK----------EASQACMTKKGFT------PLHV 152
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
A +Y +V V +++ + D + P A G TPL++A D+++ + SP H P
Sbjct: 153 AAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP--HSPA 209
Query: 149 --GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
G T LH A +N E+ + LL+ G + QG PLHLAA G+ ++V LL +
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQ--YGGSANAESVQGVTPLHLAAQEGHAEMVA-LLLS 266
Query: 207 DKSAAYKADNEGKIPLHLAAVFGN 230
++ + G PLHL A G+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGH 290
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 24/200 (12%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKD--KAL 86
+N K ET LH+A R GH ++ K L+ K + +AKD L
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAK------------------VNAKAKDDQTPL 84
Query: 87 HEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHG 146
H A R +VK++ E+ + P A AG TPL++AA G+ + + + S A
Sbjct: 85 HCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 147 PMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
G T LH A + ++LLE + + G PLH+A H D+VK LL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 207 DKSAAYKADNEGKIPLHLAA 226
S A N G PLH+AA
Sbjct: 202 GGSPHSPAWN-GYTPLHIAA 220
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
A G T LH+A H ++DIVK L+ PH + G T LH
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----------SPAWNGYT------PLHI 218
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHG-P 147
A + N+VEV + + + S ++ G TPL+LAA+ G+ + M + L+ ++ G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAE-MVALLLSKQANGNLGNK 276
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELL--K 205
G T LH VA + VL++ G + G+ PLH+A+H G +VK LL +
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGN 230
AD +A K G PLH AA G+
Sbjct: 335 ADVNAKTKL---GYSPLHQAAQQGH 356
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 118 TPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQT 177
TPL++A+ G+ +++++ SP T LH A TE+ K LL++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
D Q PLH AA +G+ ++VK LL+ + + A G PLH+AA G+ E
Sbjct: 76 KAKDDQ--TPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAAREGHVE 127
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 15 VTDILEMSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATL 73
V D+L + G+++ A T+ G T LH+A +G++ +VK L+ HQ D + A T
Sbjct: 293 VADVL-IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-----HQAD----VNAKT- 341
Query: 74 MLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDV 131
LG + LH+A + ++V ++ K S P + ++ G TPL +A GY V
Sbjct: 342 KLGYS------PLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISV 392
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
G TPL+LAA G+ +V++ + GRT LH A E+ K+LLE+ G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
+ D+ G PLHLAA G+ +VVK LL+A K D G+ PLHLAA G+ E
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLE 115
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH A R +EVVK++ + + N G TPL+LAA G+ +V++ +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 146 GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
GRT LH A E+ K+LLE+ G + D+ G PLHLAA G+ +VVK LL+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 206 A 206
A
Sbjct: 123 A 123
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
GRT LH A E+ K+LLE+ G + D+ G PLHLAA G+ +VVK LL+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 209 SAAYKADNEGKIPLHLAAVFGNGERN----EQGSNTSIEDKN 246
K D G+ PLHLAA G+ E E G++ + +DKN
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 25/143 (17%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDK----ALHE 88
G T LH+A R+GH+++VK L L G AKDK LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLL--------------------LEAGADVNAKDKNGRTPLHL 41
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
A R +EVVK++ + + N G TPL+LAA G+ +V++ +
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Query: 149 GRTALHAVAFRNDTEMTKVLLES 171
GRT LH A E+ K+LLE+
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEA 123
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AAE G KD ++D+ G+T LH A E+ K+LL S G +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL--SQGADPNA 65
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLK--ADKSAAYKADNEGKIPLHLAAVFGNGE 232
D G PLHLAA G+ +VVK LL AD +A D++GK PLHLAA G+ E
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKE 117
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH A EVVK++ + P ++ G+TPL+LAAE G+K+V++ + P
Sbjct: 41 LHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 99
Query: 146 GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
G+T LH A E+ K+LL S G + D G PL LA G +VVK L K
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLL--SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
G TPL+ AAE G+K+V++ + GRT LH A E+ K+L+ S G
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI--SKGA 94
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
+ D G PLH AA G+ +VVK LL + + +D++G+ PL LA GN E
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AAE G KD ++D+ GRT LH A E+ K+L+ S G +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNA 65
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKA-DNEGKIPLHLAAVFGNGE 232
D G PLH AA G+ +VVK L+ K A A D++G+ PLH AA G+ E
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENGHKE 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 52/177 (29%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
+++ G T LH A +GH ++VK LI++ G AKD
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISK--------------------GADVNAKD----- 67
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+ G TPL+ AAE G+K+V++ +
Sbjct: 68 -------------------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 102
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
GRT LH A E+ K+L+ S G + D G PL LA G +VVK L K
Sbjct: 103 GRTPLHHAAENGHKEVVKLLI--SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 112 ANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLES 171
+++ G TPL+ AA+ G+K++++ + GRT LH A E+ K+L+
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-- 90
Query: 172 SIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNG 231
S G + D G PLH AA G+ ++VK LL + + +D++G+ PL LA GN
Sbjct: 91 SKGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNTSDSDGRTPLDLAREHGNE 149
Query: 232 E 232
E
Sbjct: 150 E 150
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AAE G KD ++D+ GRT LH A E+ K+L+ S G +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNA 65
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKA-DNEGKIPLHLAAVFGNGE 232
D G PLH AA G+ ++VK L+ K A A D++G+ PLH AA G+ E
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGRTPLHYAAKEGHKE 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 52/177 (29%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
+++ G T LH A + GH +IVK LI++ G AKD
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISK--------------------GADVNAKD----- 67
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+ G TPL+ AA+ G+K++++ +
Sbjct: 68 -------------------------SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 102
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
GRT LH A E+ K+L+ S G + D G PL LA G ++VK L K
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLI--SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 40 AGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVK 99
A +G+ D VKDL+ P+ +D + G T LH A E+VK
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSD----------GRT------PLHYAAENGHKEIVK 54
Query: 100 MVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFR 159
++ + P ++ G TPL+ AAE G+K++++ + P GRT LH A
Sbjct: 55 LLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 160 NDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
E+ K+LL S G + D G PL LA G ++VK L K
Sbjct: 114 GHKEIVKLLL--SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
+ L EA R + + V+++ + A+N G TPL+LAA G+ ++++ +
Sbjct: 16 RKLLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A+ E+ +VLL++ G + +D G PLHLAA GY ++V+ L
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKN--GADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 204 LK 205
LK
Sbjct: 133 LK 134
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
A+ G T LH+A GH++IV+ L+ H D + A+ + G T LH
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLL-----KHGADVD-----ASDVFGYT------PLHL 86
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
A + +E+V+++ K + ++ G TPL+LAA+ GY ++++ +
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNA-MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + +++G+TPL+LAA +G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
MG T LH A E+ +VLL++ G + D G+ PLHLAA G+ ++V+ L
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKN--GADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 204 LK 205
LK
Sbjct: 133 LK 134
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G+T LH+A GH++IV+ L+ H D + AA M D LH A
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLL-----KHGAD----VNAADKM-------GDTPLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMG 149
Y +E+V+++ K + + G TPL+LAA+ G+ ++++ + G
Sbjct: 88 ALYGHLEIVEVLLKNGADVNA-TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 150 RTALHAVAFRNDTEMTKVL 168
+TA + ++ ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + +++ G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
+G T LH A R E+ +VLL++ G + D G+ PLHLAA++G+ ++V+ L
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKN--GADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKHGADVNAQDK 144
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G+ L A D E+ ++L+ + G + D GW PLHLAA+ G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-- 68
Query: 208 KSAAYKADNE-GKIPLHLAAVFGNGERNE----QGSNTSIEDKN 246
A AD+ G PLHLAA G+ E E G++ + D N
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHN 112
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G T LH+A GH++IV+ L+ + +D LG+T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDS----------LGVT------PLHLAADR 90
Query: 93 NRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTA 152
+EVV+++ K + + +N G TPL+LAA G+ ++++ + G+TA
Sbjct: 91 GHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 153 LHAVAFRNDTEMTKVL 168
+ ++ ++L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
GRT LH A E+ K+LLE+ G + D+ G PLHLAA G+ +VVK LL+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 209 SAAYKADNEGKIPLHLAAVFGNGE 232
K D G+ PLHLAA G+ E
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLE 82
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
G TPL+LAA G+ +V++ + GRT LH A E+ K+LLE+ G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
+ D+ G PLHLAA G+ +VVK LL+A
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 25/105 (23%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDK----ALHE 88
G T LH+A R+GH+++VK L L G AKDK LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLL--------------------LEAGADVNAKDKNGRTPLHL 41
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQ 133
A R +EVVK++ + + N G TPL+LAA G+ +V++
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVK 85
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLI 53
+ G T LH+A R+GH+++VK L+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + G TPL+LAA G+ ++++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL++ G + D+ G+ PLHLAA G+ ++V+ L
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 204 LKADKSAAYKADNEGKIPLHLAAVFGN 230
LKA + D GK P LA GN
Sbjct: 121 LKAGADVNAQ-DKFGKTPFDLAIDNGN 146
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G T LH A E+ +VLL++ G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 209 SAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
K D +G PLHLAA G+ E E G++ + +DK
Sbjct: 93 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G+ L A D E+ ++L+ + G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 208 KSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDKN 246
K D +G PLHLAA G+ E E G++ + +DK+
Sbjct: 59 ADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 100
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 53/187 (28%)
Query: 21 MSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTN 79
M+ G + A K G T LH+A R GH++IV+ L L G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 61
Query: 80 EAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTC 139
AKDK G TPL+LAA G+ ++++ +
Sbjct: 62 NAKDK------------------------------DGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 140 KSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDV 199
G T LH A E+ +VLL++ G + D+ G P LA G D+
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 200 VKELLKA 206
+ L KA
Sbjct: 150 AEVLQKA 156
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 123 AAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQ 182
AA G D ++ + + GRT LH A E+ +VLL + G + VD
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN--GADVNAVDT 66
Query: 183 QGWRPLHLAAHLGYYDVVKELLK--ADKSAAYKADNEGKIPLHLAAVFGNGERNE----Q 236
G PLHLAA LG+ ++V+ LLK AD +A D G PL+LAA +G+ E E
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNA---KDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 237 GSNTSIEDK 245
G++ + +DK
Sbjct: 124 GADVNAQDK 132
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G T LH+A GH++IV+ L+ + D G T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTT------PLHLAASL 78
Query: 93 NRVEVVKMVTKEDPSLPYDANNA-GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRT 151
+E+V+++ K + +A +A G TPLYLAA G+ ++++ + G+T
Sbjct: 79 GHLEIVEVLLKYGADV--NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Query: 152 A 152
A
Sbjct: 137 A 137
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNA-GETPLYLAAERGYKDVMQDIFLTCKSP 142
K L EA R + + V+++ + +AN+ G TPL+L G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 143 AGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKE 202
G T LH A+R E+ +VLL+ G + +D QG+ PLHLAA G+ ++V+
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLK--YGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 203 LLK--ADKSAAYKADNEGKIPLHLAAVFGN 230
LLK AD +A D GK ++ GN
Sbjct: 132 LLKYGADVNA---QDKFGKTAFDISIDNGN 158
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 123 AAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQ 182
AA G D ++ + + G T LH V E+ +VLL+ + S D+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS--DK 78
Query: 183 QGWRPLHLAAHLGYYDVVKELLK--ADKSAAYKADNEGKIPLHLAAVFGNGERNE----Q 236
GW PLHLAA+ G+ ++V+ LLK AD +A D +G PLHLAA G+ E E
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNA---MDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 237 GSNTSIEDK 245
G++ + +DK
Sbjct: 136 GADVNAQDK 144
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 21 MSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTN 79
M+ G + AN G T LH+ +GH++I++ L+ + +D G T
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS----------GWT- 82
Query: 80 EAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NA----GETPLYLAAERGYKDVMQD 134
LH A +E+V+++ K Y A+ NA G TPL+LAAE G+ ++++
Sbjct: 83 -----PLHLAAYRGHLEIVEVLLK------YGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 135 IFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVL 168
+ G+TA + ++ ++L
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AA G D ++ + H G T LH A+ E+ +VLL+ G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH--GADVNA 75
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLK--ADKSAAYKADNEGKIPLHLAAVFGNGERNE-- 235
D GW PLHLAA G+ ++V+ LLK AD +A D G PLHLAA G+ E E
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA---QDAYGLTPLHLAADRGHLEIVEVL 132
Query: 236 --QGSNTSIEDK 245
G++ + +DK
Sbjct: 133 LKHGADVNAQDK 144
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + ++ G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL+ G + D G PLHLAA G+ ++V+ L
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLK--YGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKHGADVNAQDK 144
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ +G T LH+A GH +IV+ L+ + D + G T LH A
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD----------GWT------PLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNA-GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+E+V+++ K + +A +A G TPL+LAA+RG+ ++++ +
Sbjct: 88 ADNGHLEIVEVLLKYGADV--NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R R + V+++ + A+ G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNA-ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
+ +G T LH A E+ +VLL++ G + D G PLHLAA+ G+ ++V+ L
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKN--GADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKYGADVNAQDK 144
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G T LH A+ E+ +VLL++ G + D G PLHLAAH G+ ++V+ LLK
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLKN--GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 208 KSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
K DN G PLHLAA G+ E E G++ + +DK
Sbjct: 104 ADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHE 88
A+ G T LH+A GH++IV+ L+ + D LG T LH
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT----------LGST------PLHL 86
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
A + +E+V+++ K + +N G TPL+LAA RG+ ++++ +
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + G TPL+LAA G+ ++++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL++ G + D+ G+ PLHLAA G+ ++V+ L
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 204 LKADKSAAYKADNEGKIPLHLA 225
LKA + D GK P LA
Sbjct: 121 LKAGADVNAQ-DKFGKTPFDLA 141
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G T LH A E+ +VLL++ G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 209 SAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
K D +G PLHLAA G+ E E G++ + +DK
Sbjct: 93 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G+ L A D E+ ++L+ + G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 208 KSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDKNN 247
K D +G PLHLAA G+ E E G++ + +DK+
Sbjct: 59 ADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 53/187 (28%)
Query: 21 MSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTN 79
M+ G + A K G T LH+A R GH++IV+ L L G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 61
Query: 80 EAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTC 139
AKDK G TPL+LAA G+ ++++ +
Sbjct: 62 NAKDK------------------------------DGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 140 KSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDV 199
G T LH A E+ +VLL++ G + D+ G P LA G+ D+
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 200 VKELLKA 206
+ L KA
Sbjct: 150 AEVLQKA 156
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
+G T LH A R E+ +VLL++ G + D G+ PLHLAA G+ ++V+ L
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKN--GADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKNGADVNAQDK 144
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G+ L A D E+ ++L+ + G + D GW PLHLAAH G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 208 KSAAYKADNEGKIPLHLAAVFG 229
K D+ G PLHLAA G
Sbjct: 71 ADVNAK-DSLGVTPLHLAARRG 91
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G T LH+A GH++IV+ L+ + D LG+T LH A R
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDS----------LGVT------PLHLAARR 90
Query: 93 NRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTA 152
+E+V+++ K + +++ G TPL+LAA+RG+ ++++ + G+TA
Sbjct: 91 GHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 153 LHAVAFRNDTEMTKVL 168
+ ++ ++L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 86/226 (38%), Gaps = 56/226 (24%)
Query: 37 LHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVE 96
LH A GHVDI L+ A + +E + L EA N +E
Sbjct: 15 LHAAAEAGHVDICHMLVQ----------------AGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 97 VVKMVTKEDPSL-PYDANNAGETPLYLAAERGYKDVMQDIF------LTCKSPAGHGPM- 148
VK + K + P DA G T L+LAA++G+ +V+Q + + C+ G PM
Sbjct: 59 AVKYLIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 149 ---------------------------GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVD 181
LH AF ++ ++LL + V+
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VN 174
Query: 182 QQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAV 227
G PLH+AA YD V L D K + EG+ PL A++
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASL 219
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 118 TPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQT 177
+PL+ AAE G+ D+ + + RT L A N E K L+++ G
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALV 70
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGERNE-- 235
D +G LHLAA G+Y+VV+ LL + D+ G P+ A + + + +
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 236 --QGSNTSIEDKNNN 248
+GS+ +I D N
Sbjct: 131 LSKGSDINIRDNEEN 145
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 150 RTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKS 209
R+ LHA A ++ +L+++ T DQ+ PL AA + + VK L+KA
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAGAL 69
Query: 210 AAYKADNEGKIPLHLAAVFGNGE 232
K D EG LHLAA G+ E
Sbjct: 70 VDPK-DAEGSTCLHLAAKKGHYE 91
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA + + V+++ + +N G TPL+LAA G ++++ +
Sbjct: 8 KKLLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A+ E+ +VLL+ G + D+ GW PLHLAA G ++V+ L
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKH--GADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 204 LK 205
LK
Sbjct: 125 LK 126
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--A 206
G T LH A E+ +VLL++ G + D G PLHLAA+ G+ ++V+ LLK A
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKN--GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 207 DKSAAYKADNEGKIPLHLAAVFG 229
D +A +A G PLHLAA+ G
Sbjct: 97 DVNAYDRA---GWTPLHLAALSG 116
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A A D E+ ++L+ + G + D G PLHLAA G ++V+ LLK
Sbjct: 6 LGKKLLEAAAAGQDDEV-RILMAN--GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD +A+ D+ G PLHLAA G
Sbjct: 63 ADVNAS---DSAGITPLHLAAYDG 83
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G T LH+A +G ++IV+ L+ + +D + LH A
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI----------------TPLHLA 79
Query: 90 VRYNRVEVVKMVTKEDPSL-PYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+E+V+++ K + YD AG TPL+LAA G ++++ + +
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYD--RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDAL 137
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G TA + ++ ++L
Sbjct: 138 GLTAFDISINQGQEDLAEIL 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL++ G + D+ G+ PLHLAA G+ ++V+ L
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 204 LKA 206
LKA
Sbjct: 133 LKA 135
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD 207
+G+ L A D E+ ++L+ + G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 208 KSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDKN 246
K D +G PLHLAA G+ E E G++ + +DK+
Sbjct: 71 ADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 112
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 21 MSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTN 79
M+ G + A K G T LH+A R GH++IV+ L L G
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 73
Query: 80 EAKDK----ALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDI 135
AKDK LH A R +E+V+++ K + + G TPL+LAA G+ ++++ +
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEVL 132
Query: 136 FLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--A 206
G T LH A E+ +VLL+ G + +D G PLHLAA +G+ ++V+ LLK A
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKH--GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 207 DKSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
D +A D G PLHLAA+ G+ E E G++ + +DK
Sbjct: 105 DVNA---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + T+ + LH A Y +E+V+++ K
Sbjct: 13 DLGKKLL-EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH-- 69
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
A+ D+M G T LH A E+ +
Sbjct: 70 ----------------GADVNAIDIM----------------GSTPLHLAALIGHLEIVE 97
Query: 167 VLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--ADKSAAYK 213
VLL+ G + VD G PLHLAA +G+ ++V+ LLK AD +A K
Sbjct: 98 VLLKH--GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G T LH+A +GH++IV+ L+ + D ++G T LH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID----------IMGST------PLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMG 149
+E+V+++ K + + G+TPL+LAA G+ ++++ + G
Sbjct: 88 ALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 150 RTALHAVAFRNDTEMTKVL 168
+TA + ++ ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + +N G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-TDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL+ G + D G PLHLAA G+ ++V+ L
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKH--GADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKHGADVNAQDK 144
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + D G+ PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD +A +D G PLHLAA G
Sbjct: 71 ADVNA---SDLTGITPLHLAAATG 91
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G T LH+A +GH++IV+ L+ + +D + G+T LH A
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----------LTGIT------PLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSL-PYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+E+V+++ K + YD N G TPL+LAA+ G+ ++++ +
Sbjct: 88 AATGHLEIVEVLLKHGADVNAYD--NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 12/104 (11%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + +D+ G PLHLAA LG+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
AD +A DN G PLHLAA+ G+ E E G++ + +DK
Sbjct: 71 ADVNA---EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + +E LH A + +E+V+++ K
Sbjct: 13 DLGKKLL-EAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
+ + +N G TPL+LAA RG+ ++++ + G+TA + ++ +
Sbjct: 72 DVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 167 VL 168
+L
Sbjct: 131 IL 132
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + +G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL+ G + VD G PLHLAA +G+ ++V+ L
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKH--GADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKHGADVNAQDK 144
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKV-IEAATLMLGMTNEAKDKALHE 88
+ G T LH+A +GH++IV+ L+ H D + I +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL-----KHGADVNAIDIXGST------------PLHL 86
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
A +E+V+++ K + + G+TPL+LAA G+ ++++ +
Sbjct: 87 AALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R R + V+++ + + + +G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T L A E+ +VLL++ G + D +G PLHLAA G+ ++V+ L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 204 LK--ADKSAAYK 213
LK AD +A K
Sbjct: 133 LKNGADVNAQDK 144
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + D GW PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGRDDEV-RILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD +A D+ G PL LAA+FG
Sbjct: 71 ADVNA---VDHAGMTPLRLAALFG 91
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G T LH+A +GH++IV+ L+ D V A GMT L A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGA-----DVNAVDHA-----GMT------PLRLA 87
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNA-GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+ +E+V+++ K + +AN+ G TPL+LAA G+ ++++ +
Sbjct: 88 ALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 149 GRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 150 RTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKS 209
RTALH TE+ + LL+ +G + D GW PLH+AA G ++VK LL K
Sbjct: 42 RTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKG 97
Query: 210 AAYKADNE-GKIPLHLAA 226
A A N+ G PLH AA
Sbjct: 98 AQVNAVNQNGCTPLHYAA 115
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 29/222 (13%)
Query: 8 SSSLEHFVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKV 67
S LE IL L + + T LH A GH +IV+ L
Sbjct: 17 SGKLEELKESIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFL--------------- 60
Query: 68 IEAATLMLGMTNEAKDKA----LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLA 123
L LG+ KD A LH A R E+VK + + + N G TPL+ A
Sbjct: 61 -----LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYA 114
Query: 124 AERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQ 183
A + ++ + +P TA+H A + + +M +LL T D +
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTE 172
Query: 184 GWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
G PLHLA + K LL + ++ Y + E K PL +A
Sbjct: 173 GNTPLHLACDEERVEEAK-LLVSQGASIYIENKEEKTPLQVA 213
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 94 RVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQ-----DIFLTCKSPAGHGPM 148
++E +K D SL + T L+ A G+ ++++ + + K AG P
Sbjct: 19 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP- 77
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
LH A E+ K LL G Q + V+Q G PLH AA +++ LL+
Sbjct: 78 ----LHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 209 SAAYKADNEGKIPLHLAAVFGN 230
+ K D+ +H AA GN
Sbjct: 132 NPDAK-DHYEATAMHRAAAKGN 152
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 150 RTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKS 209
RTALH TE+ + LL+ +G + D GW PLH+AA G ++VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKG 96
Query: 210 AAYKADNE-GKIPLHLAA 226
A A N+ G PLH AA
Sbjct: 97 AQVNAVNQNGCTPLHYAA 114
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 29/222 (13%)
Query: 8 SSSLEHFVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKV 67
S LE IL L + + T LH A GH +IV+ L
Sbjct: 16 SGKLEELKESIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFL--------------- 59
Query: 68 IEAATLMLGMTNEAKDKA----LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLA 123
L LG+ KD A LH A R E+VK + + + N G TPL+ A
Sbjct: 60 -----LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYA 113
Query: 124 AERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQ 183
A + ++ + +P TA+H A + + +M +LL T D +
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTE 171
Query: 184 GWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
G PLHLA + K LL + ++ Y + E K PL +A
Sbjct: 172 GNTPLHLACDEERVEEAK-LLVSQGASIYIENKEEKTPLQVA 212
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 54/196 (27%)
Query: 94 RVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQ-----DIFLTCKSPAGHGPM 148
++E +K D SL + T L+ A G+ ++++ + + K AG P
Sbjct: 18 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP- 76
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKAD- 207
LH A E+ K LL G Q + V+Q G PLH AA +++ LL+
Sbjct: 77 ----LHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 208 --------------KSAA------------YKA-----DNEGKIPLHLAAVFGNGERNE- 235
++AA YKA D EG PLHLA + ER E
Sbjct: 131 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC---DEERVEE 187
Query: 236 ------QGSNTSIEDK 245
QG++ IE+K
Sbjct: 188 AKLLVSQGASIYIENK 203
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + +N G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL+ G + D G PLHLAA G+ ++V+ L
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLK--YGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 204 LK 205
LK
Sbjct: 133 LK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--A 206
G T LH A E+ +VLL+ G D G+ PLHLAA G+ ++V+ LLK A
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH--GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 207 DKSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
D +A D G PLHLAA G+ E E G++ + +DK
Sbjct: 105 DVNA---FDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + VD G PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILIAN--GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD A AD G PLHLAA+ G
Sbjct: 71 ADVDA---ADVYGFTPLHLAAMTG 91
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G T LH+A GH++IV+ L+ H D ++AA + G T LH A
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLL-----KHGAD----VDAADVY-GFT------PLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSL-PYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM 148
+E+V+++ K + +D G TPL+LAA+ G+ ++++ +
Sbjct: 88 AMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 149 GRTA 152
G+TA
Sbjct: 146 GKTA 149
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + + G TPL+LAA+ G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
G T LH A E+ +VLL+ G + D +G+ PLHLAA+ G+ ++V+ L
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKH--GADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 204 LK 205
LK
Sbjct: 133 LK 134
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + D G PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD +A DN G PLHLAA G
Sbjct: 71 ADVNA---WDNYGATPLHLAADNG 91
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G T LH+A + GH++IV+ L+ + D G T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN----------YGAT------PLHLAADN 90
Query: 93 NRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTA 152
+E+V+++ K + + G TPL+LAA G+ ++++ + G+TA
Sbjct: 91 GHLEIVEVLLKHGADVNA-KDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 153 LHAVAFRNDTEMTKVL 168
+ ++ ++L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 150 RTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKS 209
RTALH TE+ + LL+ +G + D GW PLH+AA G ++VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KG 96
Query: 210 AAYKADNE-GKIPLHLAA 226
A A N+ G PLH AA
Sbjct: 97 AHVNAVNQNGCTPLHYAA 114
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 28/205 (13%)
Query: 25 LLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDK 84
L + + T LH A GH +IV+ L L LG+ KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 85 A----LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCK 140
A LH A E+VK + + + N G TPL+ AA + ++ +
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 141 SPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVV 200
+P TA+H A + + +M +LL T D +G PLHLA +
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEA 188
Query: 201 KELLKADKSAAYKADNEGKIPLHLA 225
K L ++ Y + E K PL +A
Sbjct: 189 K-FLVTQGASIYIENKEEKTPLQVA 212
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 192 AHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
A+ G D +KE + ADKS A + D + + LH A G+ E
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE 54
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 150 RTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKS 209
RTALH TE+ + LL+ +G + D GW PLH+AA G ++VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV--KG 96
Query: 210 AAYKADNE-GKIPLHLAA 226
A A N+ G PLH AA
Sbjct: 97 AHVNAVNQNGCTPLHYAA 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 25 LLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDK 84
L + + T LH A GH +IV+ L L LG+ KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 85 A----LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCK 140
A LH A R E+VK + + + N G TPL+ AA + ++ +
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 141 SPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVV 200
+P TA+H A + + +M +LL T D +G PLHLA +
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEA 188
Query: 201 KELLKADKSAAYKADNEGKIPLHLA 225
K L ++ Y + E K PL +A
Sbjct: 189 K-FLVTQGASIYIENKEEKTPLQVA 212
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 192 AHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
A+ G D +KE + ADKS A + D + + LH A G+ E
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE 54
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 12/104 (11%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + D++G PLHLAA + ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGNGERNE----QGSNTSIEDK 245
AD +A DN+G PLHLAA+FG+ E E G++ + +DK
Sbjct: 71 ADVNAH---DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + + + LH A Y+ +E+V+++ K
Sbjct: 13 DLGKKLL-EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
+ +N G TPL+LAA G+ ++++ + G+TA + ++ +
Sbjct: 72 DVNA-HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 167 VL 168
+L
Sbjct: 131 IL 132
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANN-AGETPLYLAAERGYKDVMQDIFLTCKSP 142
K L EA R + + V+++ + +AN+ G TPL+LAA+ + ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 143 AGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKE 202
H G T LH A E+ +VLL+ G + D+ G ++ G D+ +
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 203 LLK 205
L K
Sbjct: 132 LQK 134
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH ++ +M K L+E+ G ++ D +GW PLH AA GY D+ E L +
Sbjct: 73 GLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLDIA-EYLISQG 129
Query: 209 SAAYKADNEGKIPLHL 224
+ ++EG PL +
Sbjct: 130 AHVGAVNSEGDTPLDI 145
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 145 HGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELL 204
H G TALH A + TE+ K+L+++ D GW PLH AAH G + + L+
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILV 252
Query: 205 K 205
+
Sbjct: 253 E 253
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AA G D ++ + G T LH A E+ +VLL++ G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN--GADVNA 75
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNE-GKIPLHLAAVFGNGERNE--- 235
+D G PLHLAA G+ ++V+ LLK A AD+ G PLHLAA G+ E E
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLK--YGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 236 -QGSNTSIEDK 245
G++ + +DK
Sbjct: 134 KYGADVNAQDK 144
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 37/159 (23%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + + D LH A R +E+V+++ K
Sbjct: 13 DLGKKLL-EAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
+ + +G TPL+LAA+RG+ E+ +
Sbjct: 72 DVNA-LDFSGSTPLHLAAKRGH---------------------------------LEIVE 97
Query: 167 VLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
VLL+ G + D G PLHLAA G+ ++V+ LLK
Sbjct: 98 VLLK--YGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + D G PLHLAA +G+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFG 229
AD +A D G PLHLAA G
Sbjct: 71 ADVNA---LDFSGSTPLHLAAKRG 91
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+T G+T LH+A R GH++IV+ L+ + D G T LH A
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD----------FSGST------PLHLA 87
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMG 149
+ +E+V+++ K + D + G TPL+LAA+ G+ ++++ + G
Sbjct: 88 AKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 150 RTALHAVAFRNDTEMTKVL 168
+TA + ++ ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + +D G PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILMAN--GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGNGE----RNEQGSNTSIEDK 245
AD +A +D+ G+ PLHLAA G+ E E G++ + +DK
Sbjct: 71 ADVNA---SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + ++AG TPL+LAA+RG+ ++++ +
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
GRT LH A E+ +VLLE G + D+ G ++ G D+ + L
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLE--YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 204 LK 205
K
Sbjct: 133 QK 134
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + ++A LH A + +E+V+++ K
Sbjct: 13 DLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
+ +++ G TPL+LAA G+ ++++ + G+TA + ++ +
Sbjct: 72 DVNA-SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 167 VL 168
+L
Sbjct: 131 IL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + +D G PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILMAN--GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGNGE----RNEQGSNTSIEDK 245
AD +A +D G+ PLHLAA G+ E E G++ + +DK
Sbjct: 71 ADVNA---SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + ++AG TPL+LAA+RG+ ++++ +
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
GRT LH A E+ +VLLE G + D+ G ++ G D+ + L
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLE--YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 204 LK 205
K
Sbjct: 133 QK 134
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + ++A LH A + +E+V+++ K
Sbjct: 13 DLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 107 SLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTK 166
+ ++ G TPL+LAA G+ ++++ + G+TA + ++ +
Sbjct: 72 DVNA-SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 167 VL 168
+L
Sbjct: 131 IL 132
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
GET L+LAA D + + GRT LHA + + ++LL +
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN 110
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
+++ G PL LAA L +V++L+ AD ADN GK LH AA N E
Sbjct: 111 LNARM-HDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTE 165
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 78/201 (38%), Gaps = 18/201 (8%)
Query: 4 FKKQSSSLEHFVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQND 63
+ S ++D+L L + GET LH+A R D K L+ + D
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD 81
Query: 64 PEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLA 123
G T LH AV + + V +++ + + + G TPL LA
Sbjct: 82 N----------TGRT------PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
Query: 124 AERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQ 183
A + +++D+ G+TALH A N+TE +LL D +
Sbjct: 126 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDK 183
Query: 184 GWRPLHLAAHLGYYDVVKELL 204
PL LAA G Y+ K LL
Sbjct: 184 DETPLFLAAREGSYEASKALL 204
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E+ ++L+ + G + +D G PLHLAA G+ ++V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILMAN--GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 206 ADKSAAYKADNEGKIPLHLAAVFGNGE----RNEQGSNTSIEDK 245
AD +A D G+ PLHLAA G+ E E G++ + +DK
Sbjct: 71 ADVNA---RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + ++AG TPL+LAA+RG+ ++++ +
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
GRT LH A E+ +VLLE G + D+ G ++ G D+ + L
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLE--YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 204 LK 205
K
Sbjct: 133 QK 134
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDP 106
D+ K L+ E + Q+D +++ A + ++A LH A + +E+V+++ K
Sbjct: 13 DLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 107 SLPYDANNA----GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDT 162
+ NA G TPL+LAA G+ ++++ + G+TA +
Sbjct: 72 DV-----NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 163 EMTKVL 168
++ ++L
Sbjct: 127 DLAEIL 132
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 86 LHEAVRYNRVEVVKMVTK--EDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
LH +V + E+ + E+ +L +++G TP ++A G +V++ ++ P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 144 GHG--PMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVK 201
+ G T LH + E+++ L+E+ G D+ PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 202 ELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
L KSA D +G PL A G+G+
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH+A N V+ + PSL + G PL+ + ++ FL K +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS--FLLSKMENVN 63
Query: 146 -----GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVV 200
G T H + E+ K L + + +K+ QG LHLA +++V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 201 KELLKADKSAAYKADNEGKIPLHLAAVFGN 230
+ L++ S K D +IPLH AA G+
Sbjct: 124 QFLIENGASVRIK-DKFNQIPLHRAASVGS 152
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 1 MSTFKKQSSSLEH---FVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECK 57
MS + + +E+ V ++L P LLL+ + G LH + +I L+++ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 58 KPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN---N 114
+ +D +++ H A +EVVK + D L D N N
Sbjct: 61 NVNLDD-------------YPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITN 105
Query: 115 AGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLL---ES 171
G T L+LA + + +V Q + S + LH A ++ ++L +S
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 172 SIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEG 218
++ Q D+QGW PL A G+ D L++ + DN+G
Sbjct: 166 AVNWQ----DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVF 228
PLH A + V+ELL + S + D +G+IPLH + F
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF 46
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 86 LHEAVRYNRVEVVKMVTK--EDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
LH +V + E+ + E+ +L +++G TP ++A G +V++ ++ P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 144 GHG--PMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVK 201
+ G T LH + E+++ L+E+ G D+ PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 202 ELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
L KSA D +G PL A G+G+
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH+A N V+ + PSL + G PL+ + ++ FL K +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS--FLLSKMENVN 63
Query: 146 -----GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVV 200
G T H + E+ K L + + +K+ QG LHLA +++V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 201 KELLKADKSAAYKADNEGKIPLHLAAVFGN 230
+ L++ S K D +IPLH AA G+
Sbjct: 124 QFLIENGASVRIK-DKFNQIPLHRAASVGS 152
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 1 MSTFKKQSSSLEH---FVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECK 57
MS + + +E+ V ++L P LLL+ + G LH + +I L+++ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 58 KPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN---N 114
+ +D +++ H A +EVVK + D L D N N
Sbjct: 61 NVNLDD-------------YPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITN 105
Query: 115 AGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLL---ES 171
G T L+LA + + +V Q + S + LH A ++ ++L +S
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 172 SIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEG 218
++ Q D+QGW PL A G+ D L++ + DN+G
Sbjct: 166 AVNWQ----DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVF 228
PLH A + V+ELL + S + D +G+IPLH + F
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF 46
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 86 LHEAVRYNRVEVVKMVTK--EDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
LH +V + E+ + E+ +L +++G TP ++A G +V++ ++ P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 144 GHG--PMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVK 201
+ G T LH + E+++ L+E+ G D+ PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 202 ELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
L KSA D +G PL A G+G+
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH+A N V+ + PSL + G PL+ + ++ FL K +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS--FLLSKMENVN 63
Query: 146 -----GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVV 200
G T H + E+ K L + + +K+ QG LHLA +++V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 201 KELLKADKSAAYKADNEGKIPLHLAAVFGN 230
+ L++ S K D +IPLH AA G+
Sbjct: 124 QFLIENGASVRIK-DKFNQIPLHRAASVGS 152
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVF 228
PLH A + V+ELL + S + D +G+IPLH + F
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQND-------------PEKVIEAATLML--GM 77
G T HIA G++++VK L KP N +K E + ++ G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 78 TNEAKDK----ALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKD 130
+ KDK LH A +++++++ S + G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK-- 205
+G+ L A D E V + ++ G + D G PLHLAA LG+ ++V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDE---VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 206 ADKSAAYKADNEGKIPLHLAA 226
AD +A N G+ PLHLAA
Sbjct: 71 ADVNATG---NTGRTPLHLAA 88
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANN-AGETPLYLAAERGYKDVMQDIFLTCKSP 142
K L EA R + + V+++T + +AN+ G TPL+LAA G+ ++++ +
Sbjct: 16 KKLLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 143 AGHGPMGRTALHAVAFRNDTEMTKVLLE 170
G GRT LH A+ + E+ +VLL+
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLK 101
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G D++Q I P+ G TALH TE+ K L++ G + D GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAADSDGWT 105
Query: 187 PLHLAAHLGYYDVVKELLKA 206
PLH AA V K L+++
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G D++Q I P+ G TALH TE+ K L++ G + D GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAADSDGWT 105
Query: 187 PLHLAAHLGYYDVVKELLKA 206
PLH AA V K L+++
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
L AA G D ++ + +G T LH A + E+ +VLL++ G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN--GADVNA 75
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLK--ADKSAAYK 213
+D G PLHL A G+ ++V+ LLK AD +A K
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 47 DIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKA----LHEAVRYNRVEVVKMVT 102
D+ K L+ E + Q+D +++ A G A+DK LH A + +E+V+++
Sbjct: 13 DLGKKLL-EAARAGQDDEVRILMAN----GADVNAEDKVGLTPLHLAAMNDHLEIVEVLL 67
Query: 103 KEDPSL-PYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRND 161
K + DA GETPL+L A G+ ++++ + G+TA +
Sbjct: 68 KNGADVNAIDA--IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 162 TEMTKVL 168
++ ++L
Sbjct: 126 EDLAEIL 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G T LH + + D + LL++ G+ + D GW PLH A + G+ VV ELL K
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVV-ELLLQHK 66
Query: 209 SAAYKADNEGKIPLHLAAVFG 229
+ + PLH AA G
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNG 87
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
N +GETLLHIA G + V+ L+ P+ D A LHEA
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------HAGWTPLHEA 50
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMG 149
+ ++VV+++ + +L ++PL+ AA+ G+ D+++ L A +
Sbjct: 51 CNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVK---LLLSYGASRNAVN 106
Query: 150 RTALHAVAFRNDTEMTKVLL 169
L V + +D M +LL
Sbjct: 107 IFGLRPVDYTDDESMKSLLL 126
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 113 NNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESS 172
N+ GET L++A+ +G ++ + P G T LH ++ ++LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 173 IGTQTSKVDQQGWRPLHLAAHLGYYDVVKELL 204
T+ Q PLH AA G+ D+VK LL
Sbjct: 67 ALVNTTGY--QNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLM 74
++D + L + + GET LH+A R+ D K L+ D
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDN---------- 53
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NAGETPLYLAAERGYKDVMQ 133
+G T LH AV + V +++ + + + DA + G TPL LAA + +++
Sbjct: 54 MGRT------PLHAAVSADAQGVFQILLR-NRATDLDARMHDGTTPLILAARLALEGMLE 106
Query: 134 DIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAH 193
D+ + +G++ALH A N+ + VLL++ G + + PL LAA
Sbjct: 107 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNKEETPLFLAAR 164
Query: 194 LGYYDVVKELL 204
G Y+ K LL
Sbjct: 165 EGSYETAKVLL 175
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
++ D+ G LHLAA D K LL+A A + DN G+ PLH A
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAA 62
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH A + ++ K LLE+S D G PLH A V + LL+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQ--DNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 209 SAAYKADNEGKIPLHLAA 226
+ ++G PL LAA
Sbjct: 80 TDLDARMHDGTTPLILAA 97
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLM 74
++D + L + + GET LH+A R+ D K L+ + D
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN---------- 56
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NAGETPLYLAAERGYKDVMQ 133
+G T LH AV + V +++ + + + DA + G TPL LAA + +++
Sbjct: 57 MGRT------PLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 134 DIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAH 193
D+ + +G++ALH A N+ + VLL++ G + + PL LAA
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAR 167
Query: 194 LGYYDVVKELL 204
G Y+ K LL
Sbjct: 168 EGSYETAKVLL 178
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
++ D+ G LHLAA D K LL+A A + DN G+ PLH A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAA 65
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH A + ++ K LLE+S D G PLH A V + L++
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 209 SAAYKADNEGKIPLHLAA 226
+ ++G PL LAA
Sbjct: 83 TDLDARMHDGTTPLILAA 100
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--A 206
G T LH A E K LL S G + + G PLHLAA G+ ++VK LL A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 207 DKSAAYKADNEGKIPLHLAAVFGNGE 232
D +A K +G P HLA G+ E
Sbjct: 67 DVNARSK---DGNTPEHLAKKNGHHE 89
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
G TPL+ AA+ G+ + ++ + G T LH A E+ K+LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK--GA 66
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
+ + G P HLA G++++VK L
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 21 MSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAE 55
+S G + A +K G T LH+A ++GH +IVK L+A+
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G T LH A ++GH + VK L+++ + ++ + LH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD----------------VNARSKDGNTPLHLAAKN 52
Query: 93 NRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQ 133
E+VK++ + + + + G TP +LA + G+ ++++
Sbjct: 53 GHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVK 92
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLM 74
++D + L + + GET LH+A R+ D K L+ + D
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN---------- 88
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NAGETPLYLAAERGYKDVMQ 133
+G T LH AV + V +++ + + + DA + G TPL LAA + +++
Sbjct: 89 MGRT------PLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 134 DIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAH 193
D+ + +G++ALH A N+ + VLL++ G + + PL LAA
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAR 199
Query: 194 LGYYDVVKELL 204
G Y+ K LL
Sbjct: 200 EGSYETAKVLL 210
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
++ D+ G LHLAA D K LL+A A + DN G+ PLH A
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAA 97
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH A + ++ K LLE+S D G PLH A V + L++
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 209 SAAYKADNEGKIPLHLAA 226
+ ++G PL LAA
Sbjct: 115 TDLDARMHDGTTPLILAA 132
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLM 74
++D + L + + GET LH+A R+ D K L+ + D
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------N 89
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NAGETPLYLAAERGYKDVMQ 133
+G T LH AV + V +++ + + + DA + G TPL LAA + +++
Sbjct: 90 MGRT------PLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLE 142
Query: 134 DIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAH 193
D+ + +G++ALH A N+ + VLL++ G + + PL LAA
Sbjct: 143 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAR 200
Query: 194 LGYYDVVKELL 204
G Y+ K LL
Sbjct: 201 EGSYETAKVLL 211
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
++ D+ G LHLAA D K LL+A A + DN G+ PLH A
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAA 98
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH A + ++ K LLE+S D G PLH A V + L++
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 209 SAAYKADNEGKIPLHLAA 226
+ ++G PL LAA
Sbjct: 116 TDLDARMHDGTTPLILAA 133
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 72 TLMLGMTN----EAKDKALHEAV---RYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAA 124
TL L + N ++ + ALH AV R +V +++ ++ ++ + N TPL++AA
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAA 255
Query: 125 ERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQG 184
ER + DVM+ + +G+TALH A + ++LL S G+ S + QG
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL--SYGSDPSIISLQG 313
Query: 185 W 185
+
Sbjct: 314 F 314
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 145 HGPMGR--TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKE 202
H GR T LH A N + ++LL+ G D+ G PLH A G+Y+V +
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 203 LLK 205
LLK
Sbjct: 110 LLK 112
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 51/246 (20%)
Query: 29 ANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVI-----------EAATLML-- 75
++ + T LH+A + V IV+ L+ H D ++ E L+L
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 76 GMTNEAKD----KALHEAVRYNRVEVVKMVTKE--DPSL----PYDANNAGETP------ 119
G A D LHEA NRVEV ++ DP+L A + TP
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 120 ---------LYLAAERGYKDVMQDIFLTC---KSPAGHGPMGRTALH-AVA--FRNDTEM 164
L A E V + + L K P H TALH AVA ++
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH----ETALHCAVASLHPKRKQV 229
Query: 165 TKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHL 224
++LL G ++ ++ PLH+AA + DV+ E+L + D+ G+ LH
Sbjct: 230 AELLLRK--GANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHR 286
Query: 225 AAVFGN 230
AA+ G+
Sbjct: 287 AALAGH 292
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 157 AFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDV-VKELLKADKSAAYKAD 215
A R+ E + L + + D + PLHLAA GY V + +LL + + D
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA--GYNRVRIVQLLLQHGADVHAKD 88
Query: 216 NEGKIPLHLAAVFGNGERNE 235
G +PLH A +G+ E E
Sbjct: 89 KGGLVPLHNACSYGHYEVTE 108
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 80 EAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDA-NNAGETPLYLAAERGYKDVMQDIFLT 138
E+ D LHEA + + ++ D + + + AG T LY A G+KD+++ +F
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ 128
Query: 139 CKSPAG-HGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQ 183
+G TALHA A++ ++ ++LL T ++++
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 153 LHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAY 212
LH A R + + L++ +G + +D+ G L+ A H G+ D+V+ L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 213 KADNEGKIPLHLAAVFG 229
+ + G LH AA G
Sbjct: 135 QQNKLGDTALHAAAWKG 151
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 117 ETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQ 176
+ PL+ AA+RG +++ G G TAL+ ++ + L + +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF-TQPNIE 132
Query: 177 TSKVDQQGWRPLHLAAHLGYYDVVKELL 204
++ ++ G LH AA GY D+V+ LL
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKAD----NE-GKIPLHLAAVFG 229
PLHLAA G+ D+V++LL+ YKAD NE G +PLH A +G
Sbjct: 75 PLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWG 116
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 24/185 (12%)
Query: 44 GHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMT----NEAKDKA---LHEAVRYNRVE 96
G + + D+ +C+ E A L L T N+ D LH A R R
Sbjct: 1 GSPEFMDDIFTQCR-------EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA 53
Query: 97 VVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAV 156
VV+M+ + N +TPL+LAA G++D++Q + G LH
Sbjct: 54 VVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 157 AFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADN 216
F ++ + L+ + G S ++ G P+ A ++ELL+ + A N
Sbjct: 113 CFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKA-----PLRELLR--ERAEKMGQN 163
Query: 217 EGKIP 221
+IP
Sbjct: 164 LNRIP 168
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLI 53
V ++L M + N +T LH+A HGH DIV+ L+
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G + LH A ++ +LL+ DQ PLHLA G++ VVK LL ++
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQA--VPLHLACQQGHFQVVKCLLDSN- 142
Query: 209 SAAYKADNEGKIPLHLAAVFGNGE 232
+ K D G PL A G+ E
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHE 166
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 182 QQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGN 230
Q G PLH+AA G D++ LLK +A + ++ +PLHLA G+
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGH 131
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 53 IAECKK--PHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPY 110
+ +C K P Q KV A+ L + +T++ LH A + R +++ ++ K +
Sbjct: 56 LCQCPKCAPAQKRLAKV-PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN--A 112
Query: 111 DANNAGET-PLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLL 169
A NA + PL+LA ++G+ V++ + + P G T L E+ +LL
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 170 ESSIGTQTSKVDQQGWRPLHLA 191
+ G + + +G LH A
Sbjct: 173 QH--GASINASNNKGNTALHEA 192
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 33 GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRY 92
G + LH+A HG D++ L+ G N + LH A +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKH----------------GANAGARNADQAVPLHLACQQ 129
Query: 93 NRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTA 152
+VVK + + + P + +G TPL A G+ +++ + S G TA
Sbjct: 130 GHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 153 LHAVAFRNDTEMTKVLL 169
LH + ++LL
Sbjct: 189 LHEAVIEKHVFVVELLL 205
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 11/48 (22%)
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKAD----NE-GKIPLHLAAVFG 229
PLHLAA G+ D+V++LL+ YKAD NE G +PLH A +G
Sbjct: 70 PLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWG 111
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH A R R VV+M+ + N +TPL+LAA G++D++Q +
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 146 GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK 205
G LH F ++ + L+ + G S ++ G P+ A ++ELL+
Sbjct: 97 NEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKA-----PLRELLR 149
Query: 206 ADKSAAYKADNEGKIP 221
+ A N +IP
Sbjct: 150 --ERAEKMGQNLNRIP 163
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLI 53
V ++L M + N +T LH+A HGH DIV+ L+
Sbjct: 49 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQD 134
+G N D+ L EA + VE VK + D TPL+ AA GY V
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVV 60
Query: 135 IFLTCKSPAGHGP--MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAA 192
+L H G LH E+ ++L++ G + D + PLH AA
Sbjct: 61 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAA 118
Query: 193 HLGYYDVVKELLK--ADKSAAYKADNEGKIPLHL 224
G Y++ K LL+ AD + K + +G PL L
Sbjct: 119 AKGKYEICKLLLQHGADPT---KKNRDGNTPLDL 149
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 151 TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSA 210
T LH A N + + LL+ G D+ G PLH A G+Y+V ELL +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAV 102
Query: 211 AYKADNEGKIPLHLAAVFG 229
AD PLH AA G
Sbjct: 103 VNVADLWKFTPLHEAAAKG 121
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 77 MTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIF 136
M N D+ L EA + VE VK + D TPL+ AA GY V +
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVVEY 60
Query: 137 LTCKSPAGHGP--MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHL 194
L H G LH E+ ++L++ G + D + PLH AA
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAK 118
Query: 195 GYYDVVKELLK--ADKSAAYKADNEGKIPLHL 224
G Y++ K LL+ AD + K + +G PL L
Sbjct: 119 GKYEICKLLLQHGADPT---KKNRDGNTPLDL 147
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 151 TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSA 210
T LH A N + + LL+ G D+ G PLH A G+Y+V ELL +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAV 100
Query: 211 AYKADNEGKIPLHLAAVFG 229
AD PLH AA G
Sbjct: 101 VNVADLWKFTPLHEAAAKG 119
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLK--A 206
G T L+ E+ +VLL++ G + VD G+ PLHLAA +G+ ++ + LLK A
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 207 DKSAAYKADNEGKIPLHLAAVFGNGERN 234
D +A D GK ++ GNG +
Sbjct: 105 DVNA---QDKFGKTAFDIS--IGNGNED 127
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 80 EAKDKALHEAVRYNR----VEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDI 135
E D LH A+ + +EV++ V K D + NN +TPL+LA ++ + +
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 136 FLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKV----DQQGWRPLHLA 191
P G T LH + VL +S + + G LHLA
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 192 AHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGN 230
+ GY +V+ L+ + G+ LHLA N
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 160
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 47/160 (29%)
Query: 32 KGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVR 91
+G T LH+A G + V L C PH + ++ +A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------SILKATN 111
Query: 92 YNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM-GR 150
YN G T L+LA+ GY +++ + P GR
Sbjct: 112 YN----------------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 149
Query: 151 TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHL 190
TALH + ++ +LL+ G ++V QG+ P L
Sbjct: 150 TALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQL 187
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
+G+ L A D E+ ++L+ + G + D+ G+ PLHLAA G+ ++V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ P+ + G +PL+LAA+ G+ + + S
Sbjct: 4 KKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
+ RT LH A + +VLL+ G + D LH A + +VV+ L
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 204 LK 205
+K
Sbjct: 120 IK 121
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 163 EMTKVLLESSIGTQTSKV------------DQQGWRPLHLAAHLGYYDVVKELLKA--DK 208
++ K LLE++ Q +V D G PLHLAA G++ + LL+A +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 209 SAAYKADNEGKIPLHLAAVFGN 230
A K D + PLH+AA G+
Sbjct: 61 DARTKVD---RTPLHMAASEGH 79
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 13 HFVTDILEMSPGLLLKANTK-GETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAA 71
HF T + + G+ A TK T LH+A GH +IV+ L+ + D
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD-------- 97
Query: 72 TLMLGMTNEAKDKALHEAVRYNRVEVVKMVTK 103
ML MT ALH A +N EVV+++ K
Sbjct: 98 --MLKMT------ALHWATEHNHQEVVELLIK 121
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 80 EAKDKALHEAVRYNR----VEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDI 135
E D LH A+ + +EV++ V K D + NN +TPL+LA ++ + +
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 136 FLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKV----DQQGWRPLHLA 191
P G T LH + VL +S + + G LHLA
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 192 AHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGN 230
+ GY +V+ L+ + G+ LHLA N
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 47/160 (29%)
Query: 32 KGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVR 91
+G T LH+A G + V L C PH + ++ +A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------SILKATN 114
Query: 92 YNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPM-GR 150
YN G T L+LA+ GY +++ + P GR
Sbjct: 115 YN----------------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 152
Query: 151 TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHL 190
TALH + ++ +LL+ G ++V QG+ P L
Sbjct: 153 TALHLAVDLQNPDLVSLLLK--CGADVNRVTYQGYSPYQL 190
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 71 ATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKD 130
+ + + N D+ L EA + VE VK + D TPL+ AA GY
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNR 58
Query: 131 VMQDIFLTCKSPAGHGP--MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPL 188
V +L H G LH E+ ++L++ G + D + PL
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPL 116
Query: 189 HLAAHLGYYDVVKELLK--ADKSAAYKADNEGKIPLHL 224
H AA G Y++ K LL+ AD + K + +G PL L
Sbjct: 117 HEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDL 151
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 151 TALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSA 210
T LH A N + + LL+ G D+ G PLH A G+Y+V ELL +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAV 104
Query: 211 AYKADNEGKIPLHLAAVFGNGERN----EQGSNTSIEDKNNN 248
AD PLH AA G E + G++ + ++++ N
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 117 ETPLYLAAERGYKDVMQDI--FLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESS-- 172
E+PL LAA+ + + F C+ G MG TALH A ++ E VL+E++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 173 --IGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNE------------G 218
TS++ +G LH+A ++V+ LL S + +A G
Sbjct: 63 LVFEPMTSEL-YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 219 KIPLHLAAVFGNGE----RNEQGSNTSIEDKNNN 248
+ PL AA G+ E E G++ +D N
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 3/146 (2%)
Query: 86 LHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGH 145
LH A NR+++VK + + + TPL+ A +G+ ++ + P+
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 146 GPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGY-YDVVKELL 204
G + +H A T + L+ G +DQ G PL AA+ + D + LL
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 205 KADKSAAYKADNEGKIPLHLAAVFGN 230
+ S LH A + GN
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGN 189
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 32 KGETLLHIAGRHGHVDIVKDLIAECK------------------KPHQNDPEKVIEAATL 73
+G + +H+A + GH IV LIA+ + + H DP +++ +
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Query: 74 MLGMTNE-AKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANN-AGETPLYLAAER 126
+ + ++ K+ ALH AV V+ ++ + ++ DA N GE+ L LA +R
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAKQR 220
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 35 TLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNR 94
TLLH A + +D+VK I++ ++ + + LH A R
Sbjct: 44 TLLHWAAINNRIDLVKYYISK---------------GAIVDQLGGDLNSTPLHWATRQGH 88
Query: 95 VEVVKMVTK--EDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTA 152
+ +V + K DPSL + G + ++LAA+ G+ ++ + + G T
Sbjct: 89 LSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 153 LHAVAFR-NDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
L A+R + + T++LL ++ + LH A G V+ LL+A
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN-TALHWAVLAGNTTVISLLLEA 199
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
+G+ L A D E+ ++L+ + G + D+ G PLHLAA G+ +VVK LL+A
Sbjct: 6 LGKKLLEAARAGQDDEV-RILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + N G TPL+LAA G+ +V++ +
Sbjct: 8 KKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 178 SKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLA 225
++ D+ G LHLAA D K LL+A A + DN G+ PLH A
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHAA 97
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 15 VTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLM 74
++D + L + + G T LH+A + D K L+ + D
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDN---------- 88
Query: 75 LGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDAN-NAGETPLYLAAERGYKDVMQ 133
+G T LH AV + V +++ + + + DA + G TPL LAA + +++
Sbjct: 89 MGRT------PLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 134 DIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAH 193
D+ + +G++ALH A N+ + VLL++ G + + PL LAA
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAR 199
Query: 194 LGYYDVVKELL 204
G Y+ K LL
Sbjct: 200 EGSYETAKVLL 210
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 149 GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADK 208
G TALH A + ++ K LLE+S D G PLH A V + L++
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 209 SAAYKADNEGKIPLHLAA 226
+ ++G PL LAA
Sbjct: 115 TDLDARMHDGTTPLILAA 132
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 161 DTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKI 220
D ++ + LLE + ++ GW PLH A + D+V+ LL+ + N G
Sbjct: 17 DVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-GAT 74
Query: 221 PLHLAAVFGN 230
P LAA+ G+
Sbjct: 75 PFLLAAIAGS 84
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 148 MGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKA 206
+G+ L A D E+ ++L+ + G + D+ G PLHLAA G+ +VVK LL+A
Sbjct: 24 LGKKLLEAARAGQDDEV-RILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 84 KALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPA 143
K L EA R + + V+++ + N G TPL+LAA G+ +V++ +
Sbjct: 26 KKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 144 GHGPMGRTALHAVAFRNDTEMTKVL 168
G+TA + ++ ++L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 161 DTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKI 220
D ++ + LLE + ++ GW PLH A + D+V+ LL+ + N G
Sbjct: 37 DVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-GAT 94
Query: 221 PLHLAAVFGN 230
P LAA+ G+
Sbjct: 95 PFILAAIAGS 104
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G ++ + + L +P G +H A + + LLE+ D +G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE--DNEGNL 105
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGERNE 235
PLHLAA G+ VV+ L+K S +++G LA ++G RNE
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---RNE 151
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G ++ + + L +P G +H A + + LLE D +G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE--DNEGNL 105
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGERNE 235
PLHLAA G+ VV+ L+K S +++G LA ++G RNE
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---RNE 151
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G ++ + + L +P G +H A + + LLE D +G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE--DNEGNL 105
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGERNE 235
PLHLAA G+ VV+ L+K S +++G LA ++G RNE
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---RNE 151
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 45/240 (18%)
Query: 28 KANTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALH 87
+A+ G+T LHIA G++ V L+ + + L + N + LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLV------------NLFQQGGRELDIYNNLRQTPLH 51
Query: 88 EAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIFLTCKSPAGHGP 147
AV VV+++ S P + G+T +LA E ++ + A G
Sbjct: 52 LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGT 106
Query: 148 M--------GRTALHAVAFRNDTEMTKVLLESSIGTQTSKVD-QQGWRPLHLAAHLGYYD 198
+ G TALH E ++LLE G VD + G PL A
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 199 VVKELLK----------ADKSAAYKADNEGKIPLHLAAVFGNGERNEQGSNTSIEDKNNN 248
+V+ LL+ + SA + A G +PL V G+++S+++ +N+
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-------RSGADSSLKNCHND 217
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 116 GETPLYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
G TPL LAA + +++D+ + +G++ALH A N+ + VLL++ G
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GA 72
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKELL 204
+ + PL LAA G Y+ K LL
Sbjct: 73 NKDMQNNKEETPLFLAAREGSYETAKVLL 101
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%)
Query: 61 QNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPL 120
+N+ E E L L N LH AV + E+V+++ L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 121 YLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVL 168
+LA E V++ + P GRT L + R + + ++L
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%)
Query: 61 QNDPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPL 120
+N+ E E L L N LH AV + E+V+++ L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 121 YLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVL 168
+LA E V++ + P GRT L + R + + ++L
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 36/208 (17%)
Query: 3 TFKKQSSSLEHFVTDILEMSPGLLLKANTKGETLLHIAGRHGHVDIVKDLIAE--CKKPH 60
TF+ S+ L +V +I A++ G T LH + H + +V+ L+ CK
Sbjct: 91 TFRAMSARLLDYVVNI----------ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK 140
Query: 61 QN----DPEKVIEAATLMLGMTNEAKDKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAG 116
QN P + ATL + +D +E V + + ++ A+ AG
Sbjct: 141 QNRAGYSPIMLTALATL------KTQDD----------IETVLQLFRLG-NINAKASQAG 183
Query: 117 ETPLYLAAERGYKDVMQDIFLTCKSPAG-HGPMGRTALHAVAFRNDTEMTKVLLESSIGT 175
+T L LA G DV++ L C++ G TAL E+ +LL +
Sbjct: 184 QTALMLAVSHGRVDVVK-ALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL-AVPSC 241
Query: 176 QTSKVDQQGWRPLHLAAHLGYYDVVKEL 203
S D+ G L +A G ++ L
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 120 LYLAAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSK 179
+++AA +G D ++ + T SP G TALH + K L +S+G S
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL--ASVGEVHSL 81
Query: 180 VDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGERNEQGSN 239
G +P+HLA D+V L++ A G+ P L E NE GS+
Sbjct: 82 --WHGQKPIHLAVXANKTDLVVALVEG-------AKERGQXPESLLNECDEREVNEIGSH 132
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 109 PYDANNAGETPLYL---AAERGYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMT 165
P A A PL L AA G +V+Q P+ G TALH + +
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70
Query: 166 KVLLESSIGTQTSKVDQQGWRPLHLAA 192
L+ + G + D GW PLH AA
Sbjct: 71 DFLI--TAGANVNSPDSHGWTPLHCAA 95
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G ++ + + L +P G +H A + + LLE D +G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE--DNEGNL 105
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
PLHLAA G+ VV+ L+K S +++G LA ++G E
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 127 GYKDVMQDIFLTCKSPAGHGPMGRTALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWR 186
G ++ + + L +P G +H A + + LLE D +G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE--DNEGNL 105
Query: 187 PLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGE 232
PLHLAA G+ VV+ L+K S +++G LA ++G E
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 149 GRTALHAVAF---RNDTEMTKVLLESSIGTQTSKVDQ-----------QGWRPLHLAAHL 194
G TAL VA R+ K+L+E + +KVD +G LH AA +
Sbjct: 235 GXTALXIVAHNEGRDQVASAKLLVE-----KGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 195 GYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFG 229
+VK L+ S K D +GK P+ LAA G
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEG 324
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 29/158 (18%)
Query: 85 ALHEAVRYNRVEVVKMVTKEDPSLPYDANNA------------GETPLYLAAERGYKDVM 132
ALH A+ ++ VK++ + + A GE PL LAA DV+
Sbjct: 106 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 165
Query: 133 QDIFLTCKSPA---GHGPMGRTALHAVAF--RNDTEMTKVLLESSIG-----------TQ 176
+ PA +G T LHA+ N E + +++ G Q
Sbjct: 166 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 225
Query: 177 TSKV-DQQGWRPLHLAAHLGYYDVVKELLKADKSAAYK 213
++ + QG PL LAA G ++ + +L+ + S Y+
Sbjct: 226 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQ 263
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G + +H A R G +D +K L+ H D + +L +H A
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE-----HGADVNALDSTGSL-----------PIHLA 116
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIF 136
+R VV + E DA+ G TPL LA +RG +++M DI
Sbjct: 117 IREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNLM-DIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 30 NTKGETLLHIAGRHGHVDIVKDLIAECKKPHQNDPEKVIEAATLMLGMTNEAKDKALHEA 89
+ G + +H A R G +D +K L+ H D + +L +H A
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE-----HGADVNALDSTGSL-----------PIHLA 114
Query: 90 VRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDIF 136
+R VV + E DA+ G TPL LA +RG +++M DI
Sbjct: 115 IREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNLM-DIL 158
>pdb|3UBP|B Chain B, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|B Chain B, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1IE7|B Chain B, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|1S3T|B Chain B, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|B Chain B, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 126
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 177 TSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGER--- 233
T +V G RP+ + +H+ + +V KELL + N IP AA F GE
Sbjct: 29 TIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLN---IPSGTAARFEPGEEMEV 85
Query: 234 --NEQGSNTS---IEDKNNN--DRKEKSSSRYEEL 261
E G N I D N D KE R +EL
Sbjct: 86 ELTELGGNREVFGISDLTNGSVDNKELILQRAKEL 120
>pdb|1UBP|B Chain B, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|B Chain B, Structure Of Native Urease From Bacillus Pasteurii
Length = 122
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 177 TSKVDQQGWRPLHLAAHLGYYDVVKELLKADKSAAYKADNEGKIPLHLAAVFGNGER--- 233
T +V G RP+ + +H+ + +V KELL + N IP AA F GE
Sbjct: 25 TIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLN---IPSGTAARFEPGEEMEV 81
Query: 234 --NEQGSNTS---IEDKNNN--DRKEKSSSRYEEL 261
E G N I D N D KE R +EL
Sbjct: 82 ELTELGGNREVFGISDLTNGSVDNKELILQRAKEL 116
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 152 ALHAVAFRNDTEMTKVLLESSIGTQTSKVDQQGWRPLHLAAHLGYYDVVKELL 204
AL A + DT+ K +L+ + Q +VD +G PL++A H ++ K L+
Sbjct: 8 ALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 29/155 (18%)
Query: 85 ALHEAVRYNRVEVVKMVTKEDPSLPYDANNA------------GETPLYLAAERGYKDVM 132
ALH A+ ++ VK++ + + A GE PL LAA DV+
Sbjct: 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 133 QDIFLTCKSPA---GHGPMGRTALHAVAF--RNDTEMTKVLLESSIG-----------TQ 176
+ PA +G T LHA+ N E + +++ G Q
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212
Query: 177 TSKV-DQQGWRPLHLAAHLGYYDVVKELLKADKSA 210
++ + QG PL LAA G ++ + +L+ + S
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 89 AVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDVMQDI 135
AVR N V+ V+ + L +A+ +G TP+ LA GY+ V Q I
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVI 154
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 83 DKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDV 131
+ ALH A YN+ + +K++ K +L N AGET L +A ++ +K+
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKEC 274
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 83 DKALHEAVRYNRVEVVKMVTKEDPSLPYDANNAGETPLYLAAERGYKDV 131
+ ALH A YN+ + +K++ K +L N AGET L +A ++ +K+
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKEC 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,152,998
Number of Sequences: 62578
Number of extensions: 496459
Number of successful extensions: 1932
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 352
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)