BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040612
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 105 NTFYELEKEVIKNSSP------IPIALEAISDGYD--EGGAAQAESIDAYLERFWQIGPQ 156
NT Y K ++K+ P E+I DG EG ++ + + + +
Sbjct: 43 NTEYN-HKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLK 101
Query: 157 TLTELVEKMNASS--VPVDCIVYDSILPWALDVAKKFGLLGATFLTQS-CAVYCIYYHAN 213
EL+ ++N S+ PV C+V D + + + A++F L + + S C++ + +
Sbjct: 102 PYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHF-- 159
Query: 214 RGFLK---LPLTGNEIL-----------LPGMPPLEPQDMPSFVYDLGLYPAISDLVLKN 259
R F++ +P L +PG+ +D+ F+ + + ++
Sbjct: 160 RSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEV 219
Query: 260 QFDNIDKADWVLSNTFYDLEEGVVEWLGRHW-SLRTIGPTVPSTYLDKQLEDDKDYGFSM 318
D ++K +L NTF +LE V+ L S+ IGP Q+ ++
Sbjct: 220 A-DRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNL 278
Query: 319 FKQNNESCIKWLNDQAKGSVVY 340
+K++ E C+ WL + GSVVY
Sbjct: 279 WKEDTE-CLDWLESKEPGSVVY 299
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 48/234 (20%)
Query: 128 ISDGYDEG----GAAQAESIDAYLERFWQIGPQTLTE-LVEKMNASSVPVDCIVYDSILP 182
ISDG EG G Q + +E F + P++ + +V + + PV C+V D+ +
Sbjct: 69 ISDGVPEGYVFAGRPQED-----IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIW 123
Query: 183 WALDVAKKFGLLGATFLTQSCAVYCIYYHANRGFLKLPLTG-----NEIL--LPGMPPLE 235
+A D+A + G+ F T + + + K+ ++G +E+L +PGM +
Sbjct: 124 FAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVR 183
Query: 236 PQDMPSFVYDLGLYPAISDLVLKNQFDNIDKADWVLSNTFYDLEEGVVEWLGRH------ 289
+D+ + G ++ +L + KA V N+F +L++ + L
Sbjct: 184 FRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLN 242
Query: 290 ---WSLRTIGPTVPSTYLDKQLEDDKDYGFSMFKQNNESCIKWLNDQAKGSVVY 340
++L T P VP N C++WL ++ SVVY
Sbjct: 243 IGPFNLITPPPVVP---------------------NTTGCLQWLKERKPTSVVY 275
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 266 KADWVLSNTFYDLEEGVVEWLGRHWSLRTIGPTVPSTYLDKQLEDDKDYGFSMFKQNNES 325
+A+ +L NTF++LE ++ +L+ G P Y L + G KQ ES
Sbjct: 206 EAEGILVNTFFELEPNAIK------ALQEPGLDKPPVYPVGPL---VNIGKQEAKQTEES 256
Query: 326 -CIKWLNDQAKGSVVY 340
C+KWL++Q GSV+Y
Sbjct: 257 ECLKWLDNQPLGSVLY 272
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 129 SDGYDEGGAAQAESIDAYLERFWQIGPQ--TLTELVEKMNASSVPVD 173
SD YD GAA + AY++ F+Q G + L ++ + +S +D
Sbjct: 76 SDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,584,513
Number of Sequences: 62578
Number of extensions: 440842
Number of successful extensions: 909
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 17
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)