BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040614
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EB6|A Chain A, Deuterolysin From Aspergillus Oryzae
Length = 177
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 262 IRASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNC---GSNSKSTGSSQYGH 318
+ A TL K + CD+ ++LP +AQKC + + G T YG+
Sbjct: 89 VLAYTLPSKNEIANCDIYYSELPPLAQKCHAQDQATTTLHEFTHAPGVYQPGTEDLGYGY 148
Query: 319 DAYVDSNAPGALNSPEMY 336
DA +A ALN+ + Y
Sbjct: 149 DAATQLSAQDALNNADSY 166
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 177 PKTIRNLLRFNHWPADI-KIKASP----------EGHNFLPQIIKFTKSQPRLVLDRYGA 225
P+ IR L +HWPA + KI +P +G N L +K SQP V+ A
Sbjct: 285 PQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILA 344
Query: 226 DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRG 259
D+ + + S + PV R + G
Sbjct: 345 DKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAG 378
>pdb|3GFV|A Chain A, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
pdb|3GFV|B Chain B, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
Length = 303
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 30/142 (21%)
Query: 94 YGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGN 153
+ + + G D+ +Y E K DAE T KI DK D ++
Sbjct: 112 FSKIAPTIYLGVDTAKYXESF----------------KSDAE-TIGKIFDKEDKVKDELA 154
Query: 154 NGKRRHADVRRKLDEVASNNIQF-----------PKTIRNLLR--FNHWPADIKIKASPE 200
N ADV++ +++ N + PK+ L+ F PAD IKAS
Sbjct: 155 NIDHSIADVKKTAEKLNKNGLVIXANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTH 214
Query: 201 GHNFLPQIIKFTKSQPRLVLDR 222
G + + I T V+DR
Sbjct: 215 GQSVSYEYISKTNPDYLFVIDR 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,865,094
Number of Sequences: 62578
Number of extensions: 611669
Number of successful extensions: 1202
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 13
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)