BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040614
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4S9K0|UVRC_PROA2 UvrABC system protein C OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=uvrC PE=3 SV=1
Length = 616
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 6/51 (11%)
Query: 52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLN 102
K+ NLP T PG+Y+ G I+ YVG+A+++R+R+++Y R G H++
Sbjct: 15 KLSNLP--TCPGVYQFK---NNQGTII-YVGKAKNIRSRVRSYFREGPHIS 59
>sp|Q04849|NTRX_AZOC5 Nitrogen assimilation regulatory protein NtrX OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=ntrX PE=3 SV=1
Length = 454
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 81 VGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERK 140
+G +E VR ++ TG HL +GR+ ED++ R + R P+ AE+ E
Sbjct: 262 IGSSEKVRVDVRIISSTGRHLEEEIAAGRFREDLYHRLSVVPIRVPPL-----AERRE-D 315
Query: 141 ILDKFDY 147
I D D+
Sbjct: 316 IPDLVDF 322
>sp|P94421|YCLQ_BACSU Uncharacterized ABC transporter solute-binding protein YclQ
OS=Bacillus subtilis (strain 168) GN=yclQ PE=1 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 76 VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAE 135
+I++ Q+ES + + + + G D+ +Y E K DAE
Sbjct: 118 LIIISARQSESYKE----FSKIAPTIYLGVDTAKYMESF----------------KSDAE 157
Query: 136 KTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQF-----------PKTIRNLL 184
T KI DK D ++ N ADV++ +++ N + PK+ L+
Sbjct: 158 -TIGKIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLVIMANDGKISAFGPKSRYGLI 216
Query: 185 R--FNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDR 222
F PAD IKAS G + + I T V+DR
Sbjct: 217 HDVFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDR 256
>sp|Q984P3|UVRC_RHILO UvrABC system protein C OS=Rhizobium loti (strain MAFF303099)
GN=uvrC PE=3 SV=1
Length = 688
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 22 HDSQFSKWKELVGPS------DWENHS---HGKEGAERYK--VHNLPNDTGPGLYELGIA 70
D + E GP DW H+ G GAE + V LPN PG+Y +
Sbjct: 24 EDEALEEIVEPTGPDVAFTAIDWTPHAGDAEGMVGAEVIQTLVKRLPN--APGVYRMM-- 79
Query: 71 VPGAGVIVVYVGQAESVRARLQAYGRTGAHLN 102
A V+YVG+A S++ R+ Y + H N
Sbjct: 80 --NAAGDVLYVGKARSLKKRVTNYAQGRFHTN 109
>sp|Q3B5K8|UVRC_PELLD UvrABC system protein C OS=Pelodictyon luteolum (strain DSM 273)
GN=uvrC PE=3 SV=1
Length = 628
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 50 RYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLN 102
R V +LP TGPG+Y+ + V+YVG+A+++R+R+++Y R L
Sbjct: 13 RETVASLP--TGPGIYQFK----NSAGKVIYVGKAKNIRSRVRSYFRDPRQLT 59
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 39/209 (18%)
Query: 171 SNNIQFPKTI-RNLLRFNHWPADIKIKASPEGHNF--LPQIIKFTKSQPRLVLDRYGADE 227
SNNI+ K + R LR N ++ +K P N+ L I K + ++ G
Sbjct: 240 SNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGD-- 297
Query: 228 GHTGICGVSLGDGSVCQMPPVEQRKRCIE-HRGMRIRASTLTMKGKAKV---CDVDPTKL 283
GVS G G+V ++ R IE + G I + L +K K V D D +
Sbjct: 298 ------GVSTGSGTVS-FYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDI 350
Query: 284 PM-------VAQKCS--VSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPE 334
PM A+K + V G ERNR C + ST S D Y G +N+ E
Sbjct: 351 PMDDSPVNEEARKFTENVVGGGERNRLIYCSNLPFSTAKS----DLYDLFETIGKVNNAE 406
Query: 335 MYRQGRVQSK------AKLQYDTICGVEL 357
+ R SK A ++YD + ++
Sbjct: 407 L----RYDSKGAPTGIAVVEYDNVDDADV 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,840,080
Number of Sequences: 539616
Number of extensions: 8374289
Number of successful extensions: 18244
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 18235
Number of HSP's gapped (non-prelim): 16
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)