Query 040616
Match_columns 208
No_of_seqs 152 out of 1169
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2.8E-53 6E-58 339.8 15.0 187 2-208 13-215 (280)
2 COG0667 Tas Predicted oxidored 100.0 3.5E-51 7.5E-56 338.2 20.0 195 1-196 11-218 (316)
3 KOG1575 Voltage-gated shaker-l 100.0 3.7E-50 8E-55 327.6 18.3 194 1-196 22-229 (336)
4 KOG1577 Aldo/keto reductase fa 100.0 1.3E-49 2.8E-54 319.0 14.1 186 2-208 14-236 (300)
5 TIGR01293 Kv_beta voltage-depe 100.0 2.8E-47 6E-52 316.3 19.1 190 1-194 9-216 (317)
6 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.7E-47 5.8E-52 309.3 17.9 187 1-208 1-203 (267)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 6.5E-47 1.4E-51 317.3 18.9 191 1-194 23-233 (346)
8 PRK10376 putative oxidoreducta 100.0 2.1E-46 4.6E-51 307.4 18.8 207 1-208 15-237 (290)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 6.6E-46 1.4E-50 303.6 19.8 201 1-207 9-235 (285)
10 PLN02587 L-galactose dehydroge 100.0 1.7E-45 3.8E-50 305.2 18.9 201 1-207 9-244 (314)
11 PRK10625 tas putative aldo-ket 100.0 3.3E-45 7.2E-50 307.2 19.5 190 1-194 11-244 (346)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.1E-45 2.3E-50 302.1 15.7 197 5-207 1-231 (283)
13 PRK14863 bifunctional regulato 100.0 1E-44 2.3E-49 297.3 16.9 181 1-194 3-202 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4E-43 8.7E-48 285.9 17.3 185 1-208 13-213 (275)
15 COG4989 Predicted oxidoreducta 100.0 2.5E-43 5.5E-48 272.8 13.0 203 1-206 11-239 (298)
16 COG1453 Predicted oxidoreducta 100.0 4.9E-37 1.1E-41 249.6 16.2 196 2-205 12-226 (391)
17 KOG1576 Predicted oxidoreducta 100.0 8.2E-36 1.8E-40 232.9 13.8 192 1-194 32-240 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 4.6E-07 1E-11 70.8 6.6 71 113-184 155-227 (285)
19 PF07021 MetW: Methionine bios 92.1 0.92 2E-05 35.0 7.2 102 87-190 64-172 (193)
20 PRK14461 ribosomal RNA large s 90.8 2.7 5.9E-05 35.8 9.4 87 101-188 231-352 (371)
21 cd03319 L-Ala-DL-Glu_epimerase 90.8 5.8 0.00013 32.9 11.4 147 22-189 134-291 (316)
22 cd03174 DRE_TIM_metallolyase D 89.7 2.8 6.2E-05 33.5 8.5 107 76-184 14-135 (265)
23 COG1748 LYS9 Saccharopine dehy 89.4 1 2.2E-05 38.7 5.8 76 23-110 78-159 (389)
24 PRK08609 hypothetical protein; 89.4 12 0.00026 34.0 12.9 140 26-181 351-522 (570)
25 PRK13958 N-(5'-phosphoribosyl) 88.8 1.9 4.1E-05 33.7 6.6 67 90-158 16-83 (207)
26 COG2089 SpsE Sialic acid synth 88.7 7.7 0.00017 32.5 10.1 110 20-148 86-225 (347)
27 PF03102 NeuB: NeuB family; I 88.0 2.1 4.6E-05 34.3 6.5 122 20-160 52-204 (241)
28 COG1140 NarY Nitrate reductase 87.4 0.28 6.2E-06 41.5 1.2 54 126-179 263-317 (513)
29 PRK07945 hypothetical protein; 87.4 16 0.00036 30.7 14.6 83 96-181 191-288 (335)
30 PRK01222 N-(5'-phosphoribosyl) 85.4 3.3 7.2E-05 32.4 6.3 67 91-159 19-86 (210)
31 cd00308 enolase_like Enolase-s 83.8 7.9 0.00017 30.4 7.9 87 99-189 120-208 (229)
32 PRK08392 hypothetical protein; 83.2 20 0.00043 28.0 11.7 139 25-181 15-178 (215)
33 cd03316 MR_like Mandelate race 82.9 27 0.00059 29.3 12.2 145 22-185 139-299 (357)
34 PRK00730 rnpA ribonuclease P; 82.5 9.4 0.0002 27.9 7.1 63 54-126 46-110 (138)
35 COG2069 CdhD CO dehydrogenase/ 82.1 28 0.00061 28.9 10.5 97 88-189 157-263 (403)
36 COG0135 TrpF Phosphoribosylant 82.1 6.3 0.00014 30.9 6.5 82 91-181 18-102 (208)
37 TIGR01502 B_methylAsp_ase meth 81.6 35 0.00076 29.7 11.5 87 99-186 264-357 (408)
38 PRK13803 bifunctional phosphor 81.5 13 0.00028 34.1 9.2 68 92-159 20-88 (610)
39 PRK14457 ribosomal RNA large s 80.8 34 0.00073 29.0 11.6 107 82-188 195-330 (345)
40 COG0635 HemN Coproporphyrinoge 80.2 15 0.00033 31.9 8.9 108 4-139 149-276 (416)
41 cd00739 DHPS DHPS subgroup of 80.2 16 0.00035 29.5 8.5 102 78-185 21-128 (257)
42 cd03315 MLE_like Muconate lact 78.8 32 0.0007 27.6 13.3 149 22-189 85-243 (265)
43 PRK06294 coproporphyrinogen II 78.6 20 0.00042 30.6 9.0 61 77-139 166-243 (370)
44 cd03322 rpsA The starvation se 77.9 13 0.00028 31.6 7.7 83 99-185 189-273 (361)
45 PRK07379 coproporphyrinogen II 77.8 19 0.00042 31.0 8.8 61 77-139 178-255 (400)
46 PRK13796 GTPase YqeH; Provisio 77.0 46 0.00099 28.4 11.4 119 20-145 53-179 (365)
47 PRK00164 moaA molybdenum cofac 76.6 43 0.00093 27.9 14.3 139 21-182 49-228 (331)
48 PRK14462 ribosomal RNA large s 76.0 29 0.00064 29.5 9.2 86 103-188 225-338 (356)
49 cd07943 DRE_TIM_HOA 4-hydroxy- 75.6 26 0.00056 28.2 8.6 105 77-183 18-131 (263)
50 TIGR02534 mucon_cyclo muconate 75.6 12 0.00025 31.9 6.8 73 116-188 226-300 (368)
51 PRK02901 O-succinylbenzoate sy 75.3 36 0.00078 28.6 9.5 71 117-189 173-244 (327)
52 PRK05692 hydroxymethylglutaryl 75.0 26 0.00056 28.8 8.4 102 78-182 23-138 (287)
53 PRK05660 HemN family oxidoredu 75.0 27 0.00059 29.9 8.9 61 77-139 170-243 (378)
54 PRK15072 bifunctional D-altron 73.9 25 0.00055 30.3 8.5 84 99-186 232-317 (404)
55 cd03318 MLE Muconate Lactonizi 73.8 24 0.00051 29.9 8.2 71 116-186 227-299 (365)
56 TIGR01228 hutU urocanate hydra 73.3 13 0.00028 33.0 6.4 53 89-148 193-245 (545)
57 PRK09058 coproporphyrinogen II 73.2 22 0.00047 31.2 8.0 29 77-106 226-254 (449)
58 TIGR00190 thiC thiamine biosyn 73.1 25 0.00054 30.4 7.9 99 76-194 135-233 (423)
59 TIGR01928 menC_lowGC/arch o-su 72.9 16 0.00035 30.5 6.9 87 99-189 198-286 (324)
60 PRK14459 ribosomal RNA large s 72.5 26 0.00056 30.1 8.1 89 100-188 240-359 (373)
61 PRK05414 urocanate hydratase; 72.5 14 0.0003 32.9 6.4 53 89-148 202-254 (556)
62 cd03325 D-galactonate_dehydrat 72.0 30 0.00064 29.2 8.4 82 99-184 202-285 (352)
63 PRK09427 bifunctional indole-3 71.8 15 0.00032 32.4 6.6 65 91-159 273-338 (454)
64 PRK14460 ribosomal RNA large s 71.5 60 0.0013 27.6 10.0 98 90-188 207-332 (354)
65 cd03323 D-glucarate_dehydratas 70.8 34 0.00073 29.5 8.5 81 100-186 239-321 (395)
66 PRK14457 ribosomal RNA large s 70.7 65 0.0014 27.3 10.7 89 59-148 103-202 (345)
67 PLN02363 phosphoribosylanthran 70.6 21 0.00046 28.9 6.9 74 79-158 56-130 (256)
68 cd07944 DRE_TIM_HOA_like 4-hyd 70.6 50 0.0011 26.8 9.1 105 76-183 15-128 (266)
69 PRK08446 coproporphyrinogen II 70.0 67 0.0014 27.1 10.5 61 77-139 161-231 (350)
70 cd03314 MAL Methylaspartate am 69.9 39 0.00085 28.9 8.6 85 101-185 229-320 (369)
71 PRK13352 thiamine biosynthesis 69.8 33 0.00071 29.8 7.9 101 76-196 138-238 (431)
72 TIGR02370 pyl_corrinoid methyl 69.7 10 0.00022 29.3 4.7 149 22-178 10-164 (197)
73 PRK05628 coproporphyrinogen II 69.4 45 0.00097 28.4 9.0 28 77-105 171-198 (375)
74 TIGR01496 DHPS dihydropteroate 68.9 60 0.0013 26.2 10.6 99 78-184 20-125 (257)
75 TIGR00035 asp_race aspartate r 67.7 58 0.0013 25.6 9.1 70 77-147 13-95 (229)
76 COG0820 Predicted Fe-S-cluster 67.7 55 0.0012 27.8 8.8 87 101-188 215-330 (349)
77 PRK02714 O-succinylbenzoate sy 67.5 45 0.00098 27.8 8.4 85 99-189 192-277 (320)
78 PRK13347 coproporphyrinogen II 66.4 34 0.00073 30.1 7.8 61 77-139 215-291 (453)
79 PRK08599 coproporphyrinogen II 66.3 51 0.0011 28.0 8.7 61 77-139 163-240 (377)
80 PRK14465 ribosomal RNA large s 66.3 60 0.0013 27.5 8.9 88 101-188 215-329 (342)
81 COG4464 CapC Capsular polysacc 66.0 26 0.00056 27.7 6.1 61 20-104 16-76 (254)
82 PRK14466 ribosomal RNA large s 66.0 78 0.0017 26.9 9.5 88 101-188 210-325 (345)
83 TIGR00048 radical SAM enzyme, 65.9 62 0.0013 27.5 9.0 88 101-188 218-333 (355)
84 PF00697 PRAI: N-(5'phosphorib 65.8 10 0.00022 29.3 3.9 67 90-160 14-81 (197)
85 cd03327 MR_like_2 Mandelate ra 65.5 43 0.00092 28.2 8.0 82 99-184 197-280 (341)
86 PRK08208 coproporphyrinogen II 65.3 51 0.0011 28.7 8.6 61 77-139 204-275 (430)
87 TIGR01927 menC_gamma/gm+ o-suc 65.0 62 0.0013 26.8 8.8 85 99-189 183-269 (307)
88 PRK10550 tRNA-dihydrouridine s 65.0 81 0.0018 26.3 12.2 123 22-156 73-223 (312)
89 PF13378 MR_MLE_C: Enolase C-t 64.9 10 0.00022 26.0 3.5 54 135-189 3-57 (111)
90 PRK14017 galactonate dehydrata 64.8 62 0.0014 27.6 9.0 83 99-185 203-287 (382)
91 TIGR03569 NeuB_NnaB N-acetylne 64.0 89 0.0019 26.4 11.5 136 20-160 72-226 (329)
92 cd08556 GDPD Glycerophosphodie 63.2 59 0.0013 24.1 9.2 130 23-185 12-168 (189)
93 PF02525 Flavodoxin_2: Flavodo 63.0 65 0.0014 24.5 9.1 83 23-108 94-180 (199)
94 PRK14464 ribosomal RNA large s 62.9 55 0.0012 27.8 8.0 79 110-188 222-317 (344)
95 TIGR03597 GTPase_YqeH ribosome 62.3 89 0.0019 26.5 9.4 115 21-142 48-170 (360)
96 cd03317 NAAAR N-acylamino acid 62.0 46 0.001 28.0 7.6 87 99-189 203-291 (354)
97 TIGR00676 fadh2 5,10-methylene 61.3 52 0.0011 26.7 7.5 143 24-180 15-186 (272)
98 PF14871 GHL6: Hypothetical gl 60.8 20 0.00043 25.9 4.5 23 165-187 45-67 (132)
99 PF00682 HMGL-like: HMGL-like 60.7 44 0.00094 26.3 6.9 99 78-182 11-126 (237)
100 TIGR00538 hemN oxygen-independ 60.6 51 0.0011 28.9 7.8 61 77-139 214-290 (455)
101 PRK08195 4-hyroxy-2-oxovalerat 60.6 1E+02 0.0022 26.0 9.7 103 76-183 20-134 (337)
102 COG0646 MetH Methionine syntha 60.5 99 0.0021 25.7 10.0 88 22-109 51-167 (311)
103 PRK13361 molybdenum cofactor b 60.5 1E+02 0.0022 25.8 13.0 125 21-162 45-195 (329)
104 PRK14456 ribosomal RNA large s 60.4 63 0.0014 27.7 8.1 88 101-188 237-353 (368)
105 PLN00191 enolase 60.4 81 0.0018 27.9 8.9 144 22-184 241-395 (457)
106 COG2159 Predicted metal-depend 60.2 76 0.0017 26.1 8.4 112 91-204 55-190 (293)
107 PF04476 DUF556: Protein of un 60.2 88 0.0019 25.0 8.3 135 31-180 14-183 (235)
108 TIGR03822 AblA_like_2 lysine-2 59.9 1E+02 0.0022 25.7 9.6 109 79-190 120-240 (321)
109 PRK05799 coproporphyrinogen II 59.6 87 0.0019 26.6 8.9 28 77-105 162-189 (374)
110 PF01175 Urocanase: Urocanase; 59.5 24 0.00052 31.5 5.4 63 89-158 192-257 (546)
111 TIGR02026 BchE magnesium-proto 59.5 1.3E+02 0.0028 26.8 10.2 107 76-186 220-345 (497)
112 PRK06015 keto-hydroxyglutarate 59.4 30 0.00065 27.0 5.5 60 116-182 42-102 (201)
113 PF13407 Peripla_BP_4: Peripla 59.1 49 0.0011 25.8 7.0 50 81-136 14-63 (257)
114 PHA02128 hypothetical protein 58.7 31 0.00068 23.9 4.8 70 114-183 60-150 (151)
115 TIGR03247 glucar-dehydr glucar 58.6 58 0.0013 28.6 7.8 86 101-186 252-338 (441)
116 COG2987 HutU Urocanate hydrata 58.6 29 0.00063 30.5 5.7 57 91-154 204-261 (561)
117 cd07939 DRE_TIM_NifV Streptomy 57.9 97 0.0021 24.8 9.3 102 77-186 16-132 (259)
118 PRK14453 chloramphenicol/florf 57.4 1.2E+02 0.0026 25.7 10.5 92 97-188 203-330 (347)
119 cd00423 Pterin_binding Pterin 57.1 1E+02 0.0022 24.8 9.9 105 78-188 21-131 (258)
120 TIGR03586 PseI pseudaminic aci 56.8 1.2E+02 0.0026 25.6 11.0 132 22-160 75-225 (327)
121 PRK14463 ribosomal RNA large s 56.8 1E+02 0.0022 26.2 8.7 87 102-188 211-325 (349)
122 smart00642 Aamy Alpha-amylase 56.4 15 0.00032 27.5 3.3 22 166-187 72-93 (166)
123 cd07939 DRE_TIM_NifV Streptomy 56.1 1E+02 0.0023 24.7 13.3 89 111-201 136-231 (259)
124 smart00052 EAL Putative diguan 56.0 76 0.0016 24.4 7.5 99 82-184 100-210 (241)
125 PRK00077 eno enolase; Provisio 55.9 1.4E+02 0.003 26.1 9.7 96 78-182 261-361 (425)
126 cd03319 L-Ala-DL-Glu_epimerase 55.8 1.2E+02 0.0025 25.1 9.1 22 79-101 134-155 (316)
127 PLN02746 hydroxymethylglutaryl 55.6 59 0.0013 27.6 7.0 95 82-181 68-179 (347)
128 PRK06582 coproporphyrinogen II 55.4 89 0.0019 26.9 8.3 62 76-139 172-250 (390)
129 PRK11194 ribosomal RNA large s 55.1 1.2E+02 0.0027 26.0 9.0 86 103-188 221-337 (372)
130 COG2875 CobM Precorrin-4 methy 55.0 84 0.0018 25.2 7.3 101 78-183 59-165 (254)
131 TIGR01182 eda Entner-Doudoroff 54.7 44 0.00095 26.1 5.7 87 80-182 19-106 (204)
132 cd04742 NPD_FabD 2-Nitropropan 54.6 54 0.0012 28.7 6.7 89 90-185 6-103 (418)
133 cd00740 MeTr MeTr subgroup of 54.4 1.1E+02 0.0025 24.6 11.0 108 77-189 22-131 (252)
134 cd02070 corrinoid_protein_B12- 53.9 57 0.0012 25.1 6.3 149 22-178 9-162 (201)
135 TIGR01060 eno phosphopyruvate 53.7 1.5E+02 0.0033 25.8 9.9 95 79-182 263-362 (425)
136 COG1751 Uncharacterized conser 53.1 94 0.002 23.2 7.2 86 103-189 3-95 (186)
137 PRK14455 ribosomal RNA large s 52.4 85 0.0018 26.7 7.6 87 102-188 223-337 (356)
138 PRK12331 oxaloacetate decarbox 52.2 62 0.0013 28.5 6.9 103 78-182 23-141 (448)
139 PTZ00081 enolase; Provisional 52.1 1.7E+02 0.0036 25.8 9.5 97 78-183 281-382 (439)
140 cd00248 Mth938-like Mth938-lik 51.7 55 0.0012 22.6 5.4 53 134-186 36-88 (109)
141 PRK07328 histidinol-phosphatas 51.4 1.3E+02 0.0028 24.3 10.4 50 84-134 94-160 (269)
142 PF01081 Aldolase: KDPG and KH 50.4 33 0.00071 26.6 4.4 46 130-182 60-106 (196)
143 cd03320 OSBS o-Succinylbenzoat 50.1 93 0.002 25.0 7.2 86 99-189 153-239 (263)
144 PRK06552 keto-hydroxyglutarate 48.9 56 0.0012 25.6 5.6 60 116-182 51-114 (213)
145 PF07994 NAD_binding_5: Myo-in 48.7 1.3E+02 0.0028 25.0 7.8 118 80-205 131-256 (295)
146 cd03321 mandelate_racemase Man 48.6 1.1E+02 0.0023 25.9 7.6 81 100-184 213-295 (355)
147 cd08583 PI-PLCc_GDPD_SF_unchar 48.5 1.3E+02 0.0029 23.6 9.6 73 113-185 115-213 (237)
148 TIGR02666 moaA molybdenum cofa 48.1 1.6E+02 0.0035 24.5 13.5 120 20-162 42-194 (334)
149 PLN02746 hydroxymethylglutaryl 48.0 1.7E+02 0.0038 24.8 9.5 29 78-109 223-251 (347)
150 cd07940 DRE_TIM_IPMS 2-isoprop 48.0 1.5E+02 0.0032 23.9 11.1 89 111-201 140-238 (268)
151 PF00072 Response_reg: Respons 47.9 74 0.0016 20.9 5.6 61 93-156 38-100 (112)
152 TIGR03822 AblA_like_2 lysine-2 47.8 1E+02 0.0023 25.7 7.4 66 80-148 182-253 (321)
153 PRK11267 biopolymer transport 47.6 63 0.0014 23.4 5.4 55 77-136 80-134 (141)
154 cd03328 MR_like_3 Mandelate ra 47.5 75 0.0016 26.8 6.6 69 116-184 221-293 (352)
155 TIGR02329 propionate_PrpR prop 47.3 41 0.00089 30.3 5.1 81 113-206 83-164 (526)
156 PF07476 MAAL_C: Methylasparta 47.3 67 0.0014 25.6 5.6 102 77-182 85-194 (248)
157 PF00682 HMGL-like: HMGL-like 47.2 1.4E+02 0.003 23.4 8.8 154 21-187 11-193 (237)
158 TIGR02660 nifV_homocitr homoci 47.1 1.8E+02 0.0039 24.7 9.1 98 84-188 25-137 (365)
159 COG1751 Uncharacterized conser 46.9 57 0.0012 24.3 4.9 68 22-97 12-85 (186)
160 PRK01313 rnpA ribonuclease P; 46.7 1.1E+02 0.0023 22.0 6.9 62 54-125 47-113 (129)
161 TIGR03849 arch_ComA phosphosul 46.7 73 0.0016 25.5 5.9 97 84-182 11-118 (237)
162 PF09989 DUF2229: CoA enzyme a 46.5 81 0.0018 24.8 6.2 29 155-183 190-218 (221)
163 PRK00499 rnpA ribonuclease P; 46.5 97 0.0021 21.5 6.9 63 54-126 38-104 (114)
164 PRK15424 propionate catabolism 46.3 1.3E+02 0.0028 27.3 8.0 69 113-184 93-162 (538)
165 KOG1576 Predicted oxidoreducta 46.2 40 0.00087 27.7 4.4 76 93-180 190-270 (342)
166 PF01118 Semialdhyde_dh: Semia 46.2 35 0.00075 23.8 3.7 27 22-48 75-101 (121)
167 KOG1892 Actin filament-binding 46.1 15 0.00032 35.4 2.1 85 80-164 6-122 (1629)
168 PF00113 Enolase_C: Enolase, C 46.1 1.4E+02 0.0031 24.7 7.7 153 21-187 77-238 (295)
169 PRK14454 ribosomal RNA large s 45.8 1.9E+02 0.004 24.5 9.4 88 101-188 211-326 (342)
170 PRK03459 rnpA ribonuclease P; 45.7 1.1E+02 0.0023 21.7 7.0 63 54-126 48-114 (122)
171 PRK09249 coproporphyrinogen II 45.6 1.2E+02 0.0026 26.6 7.8 61 77-139 214-290 (453)
172 PRK15440 L-rhamnonate dehydrat 45.5 87 0.0019 27.0 6.7 68 116-183 247-318 (394)
173 TIGR03217 4OH_2_O_val_ald 4-hy 45.4 1.9E+02 0.004 24.4 9.5 103 76-182 19-132 (333)
174 cd08562 GDPD_EcUgpQ_like Glyce 45.3 1.4E+02 0.0031 23.0 8.9 65 122-186 124-208 (229)
175 COG3172 NadR Predicted ATPase/ 44.8 93 0.002 23.7 5.8 89 36-127 79-185 (187)
176 PRK01903 rnpA ribonuclease P; 44.7 1.2E+02 0.0026 21.9 6.8 61 55-125 51-128 (133)
177 PRK11024 colicin uptake protei 44.6 68 0.0015 23.2 5.1 54 78-136 85-138 (141)
178 cd08568 GDPD_TmGDE_like Glycer 44.6 99 0.0021 24.1 6.5 151 23-185 13-202 (226)
179 TIGR02814 pfaD_fam PfaD family 44.5 96 0.0021 27.3 6.8 66 118-184 34-107 (444)
180 TIGR00262 trpA tryptophan synt 43.8 1.7E+02 0.0037 23.6 9.5 71 113-185 71-149 (256)
181 PF00809 Pterin_bind: Pterin b 43.6 1.5E+02 0.0033 22.9 8.1 89 92-186 29-125 (210)
182 PRK14470 ribosomal RNA large s 43.3 2E+02 0.0044 24.3 9.4 88 101-188 207-322 (336)
183 TIGR03821 AblA_like_1 lysine-2 43.1 2E+02 0.0043 24.1 8.5 77 116-192 161-248 (321)
184 COG1104 NifS Cysteine sulfinat 43.1 54 0.0012 28.3 4.9 75 114-190 102-184 (386)
185 PRK14454 ribosomal RNA large s 43.1 2.1E+02 0.0045 24.3 8.8 115 75-191 126-263 (342)
186 cd01948 EAL EAL domain. This d 43.0 1.5E+02 0.0033 22.7 9.0 101 81-184 98-209 (240)
187 PTZ00413 lipoate synthase; Pro 42.9 2.3E+02 0.0049 24.7 9.0 78 111-189 275-374 (398)
188 PRK04452 acetyl-CoA decarbonyl 42.3 2.1E+02 0.0045 24.1 9.5 92 91-187 85-185 (319)
189 cd03313 enolase Enolase: Enola 42.0 2.3E+02 0.005 24.6 10.6 96 78-182 261-361 (408)
190 PF14367 DUF4411: Domain of un 42.0 61 0.0013 24.1 4.7 42 166-207 106-147 (162)
191 PF01890 CbiG_C: Cobalamin syn 42.0 61 0.0013 22.9 4.4 33 154-186 35-67 (121)
192 COG2022 ThiG Uncharacterized e 41.8 1.4E+02 0.0031 24.0 6.7 72 76-148 78-150 (262)
193 TIGR00221 nagA N-acetylglucosa 41.7 2.3E+02 0.0049 24.3 8.7 34 115-148 178-211 (380)
194 PRK10551 phage resistance prot 41.6 1.8E+02 0.0039 26.1 8.3 99 83-185 366-475 (518)
195 PLN02428 lipoic acid synthase 41.5 2.2E+02 0.0047 24.3 8.3 77 111-188 228-325 (349)
196 TIGR00735 hisF imidazoleglycer 41.5 1.4E+02 0.0031 23.8 7.0 89 89-180 162-253 (254)
197 PRK02399 hypothetical protein; 41.1 95 0.002 27.0 6.1 58 85-148 199-270 (406)
198 PRK08776 cystathionine gamma-s 40.9 2.4E+02 0.0051 24.4 10.8 76 114-189 110-187 (405)
199 PLN02591 tryptophan synthase 40.4 1.6E+02 0.0035 23.7 7.1 17 168-184 122-138 (250)
200 COG0796 MurI Glutamate racemas 40.4 1.8E+02 0.0038 23.9 7.3 31 77-107 46-76 (269)
201 PRK14469 ribosomal RNA large s 40.4 2.2E+02 0.0049 23.9 9.7 88 101-188 211-325 (343)
202 cd08570 GDPD_YPL206cp_fungi Gl 40.3 1.8E+02 0.0039 22.8 9.3 58 128-185 132-212 (234)
203 PRK10415 tRNA-dihydrouridine s 40.3 2.2E+02 0.0047 23.8 11.9 125 22-157 75-224 (321)
204 TIGR01428 HAD_type_II 2-haloal 40.3 84 0.0018 23.6 5.4 64 83-148 61-128 (198)
205 TIGR01290 nifB nitrogenase cof 40.3 2.6E+02 0.0056 24.6 10.9 110 76-190 58-200 (442)
206 PRK09454 ugpQ cytoplasmic glyc 40.2 1.9E+02 0.0041 23.0 9.1 60 126-185 139-217 (249)
207 COG1149 MinD superfamily P-loo 40.0 59 0.0013 26.7 4.5 89 90-189 155-251 (284)
208 PRK14468 ribosomal RNA large s 40.0 2.3E+02 0.005 24.0 9.2 88 101-188 206-321 (343)
209 PRK09462 fur ferric uptake reg 39.9 35 0.00076 24.9 3.0 55 82-136 17-75 (148)
210 PRK11858 aksA trans-homoaconit 39.7 2.4E+02 0.0053 24.1 8.8 102 77-186 22-138 (378)
211 PLN02438 inositol-3-phosphate 39.5 2.5E+02 0.0053 25.3 8.4 49 80-128 206-258 (510)
212 PLN03233 putative glutamate-tR 39.5 1.4E+02 0.0031 26.9 7.2 62 78-147 57-118 (523)
213 TIGR00238 KamA family protein. 39.4 2.3E+02 0.005 23.8 9.8 78 116-193 178-266 (331)
214 PF00289 CPSase_L_chain: Carba 39.2 1.3E+02 0.0028 20.8 7.9 92 81-185 11-107 (110)
215 COG1832 Predicted CoA-binding 38.9 1.5E+02 0.0033 21.6 7.2 70 22-127 28-97 (140)
216 PRK00396 rnpA ribonuclease P; 38.7 1.5E+02 0.0032 21.3 6.5 64 53-126 45-112 (130)
217 COG4130 Predicted sugar epimer 38.6 81 0.0017 25.1 4.8 56 138-193 50-112 (272)
218 PF02679 ComA: (2R)-phospho-3- 38.1 1.2E+02 0.0026 24.4 6.0 98 84-182 24-131 (244)
219 cd00405 PRAI Phosphoribosylant 38.0 1.3E+02 0.0029 22.9 6.2 66 92-159 16-82 (203)
220 cd03329 MR_like_4 Mandelate ra 37.9 2.5E+02 0.0054 23.8 8.3 82 99-184 215-299 (368)
221 PRK04390 rnpA ribonuclease P; 37.9 1.4E+02 0.0031 20.9 7.1 65 53-126 43-110 (120)
222 PF02426 MIase: Muconolactone 37.8 97 0.0021 20.9 4.6 49 117-165 28-88 (91)
223 COG2055 Malate/L-lactate dehyd 37.4 2.6E+02 0.0057 23.8 8.2 89 77-183 5-114 (349)
224 TIGR00188 rnpA ribonuclease P 37.4 1.3E+02 0.0029 20.4 6.7 86 29-124 12-104 (105)
225 cd05560 Xcc1710_like Xcc1710_l 37.2 1.2E+02 0.0027 20.9 5.3 52 134-186 37-88 (109)
226 TIGR00539 hemN_rel putative ox 37.1 2.6E+02 0.0055 23.6 9.1 61 77-139 163-236 (360)
227 PRK13111 trpA tryptophan synth 36.9 1.7E+02 0.0037 23.7 6.8 15 168-182 133-147 (258)
228 PF00388 PI-PLC-X: Phosphatidy 36.8 26 0.00055 25.4 1.9 21 28-48 30-50 (146)
229 PF14542 Acetyltransf_CG: GCN5 36.6 8.8 0.00019 24.9 -0.6 30 167-196 45-74 (78)
230 PRK07535 methyltetrahydrofolat 36.6 2.3E+02 0.005 22.9 10.1 100 79-185 23-124 (261)
231 PF02593 dTMP_synthase: Thymid 36.6 2E+02 0.0042 22.8 6.8 40 167-206 93-132 (217)
232 KOG2499 Beta-N-acetylhexosamin 36.5 44 0.00096 29.7 3.5 43 2-48 231-277 (542)
233 COG2102 Predicted ATPases of P 36.5 71 0.0015 25.3 4.3 88 112-207 74-175 (223)
234 cd07948 DRE_TIM_HCS Saccharomy 36.1 1.4E+02 0.0029 24.2 6.1 100 77-184 18-132 (262)
235 COG2109 BtuR ATP:corrinoid ade 36.1 2.1E+02 0.0045 22.3 7.4 94 25-121 44-150 (198)
236 PRK01732 rnpA ribonuclease P; 36.0 1.5E+02 0.0033 20.6 6.7 87 30-126 18-111 (114)
237 PRK13397 3-deoxy-7-phosphohept 35.7 2.2E+02 0.0049 23.0 7.2 98 78-185 26-130 (250)
238 COG0218 Predicted GTPase [Gene 35.4 2.1E+02 0.0047 22.3 10.0 92 23-126 90-198 (200)
239 PRK03031 rnpA ribonuclease P; 35.3 1.6E+02 0.0035 20.7 6.8 64 54-126 47-114 (122)
240 COG0788 PurU Formyltetrahydrof 35.1 2.6E+02 0.0055 23.0 10.2 140 26-182 21-171 (287)
241 PF11372 DUF3173: Domain of un 34.6 41 0.00089 20.7 2.2 22 22-43 15-40 (59)
242 COG2185 Sbm Methylmalonyl-CoA 34.6 30 0.00066 25.4 1.9 49 140-192 30-78 (143)
243 KOG0059 Lipid exporter ABCA1 a 34.5 2.5E+02 0.0054 27.2 8.4 71 76-148 668-767 (885)
244 COG0626 MetC Cystathionine bet 34.4 2.5E+02 0.0055 24.4 7.8 81 112-192 111-194 (396)
245 PF02574 S-methyl_trans: Homoc 34.2 2.6E+02 0.0057 22.9 8.3 161 22-185 39-248 (305)
246 PRK08084 DNA replication initi 34.1 62 0.0013 25.6 3.8 45 98-142 97-145 (235)
247 PF04430 DUF498: Protein of un 34.0 70 0.0015 22.0 3.7 52 135-186 37-89 (110)
248 PF02581 TMP-TENI: Thiamine mo 33.7 2E+02 0.0043 21.5 6.4 55 127-184 93-156 (180)
249 cd08561 GDPD_cytoplasmic_ScUgp 33.5 2E+02 0.0043 22.7 6.7 71 115-185 119-220 (249)
250 cd00959 DeoC 2-deoxyribose-5-p 33.5 2.2E+02 0.0048 21.8 13.0 136 20-163 13-159 (203)
251 cd00019 AP2Ec AP endonuclease 33.4 1.1E+02 0.0023 24.6 5.2 18 168-185 89-106 (279)
252 PF01207 Dus: Dihydrouridine s 33.4 2.8E+02 0.0061 23.0 8.9 124 22-156 64-212 (309)
253 PF01890 CbiG_C: Cobalamin syn 33.3 1.6E+02 0.0035 20.7 5.4 63 77-146 11-73 (121)
254 cd03325 D-galactonate_dehydrat 33.3 2.7E+02 0.006 23.4 7.8 40 168-207 241-280 (352)
255 PRK09536 btuD corrinoid ABC tr 33.1 1.1E+02 0.0024 26.5 5.5 74 116-189 279-352 (402)
256 PF05368 NmrA: NmrA-like famil 33.1 1.3E+02 0.0028 23.3 5.5 95 85-190 12-107 (233)
257 PF05049 IIGP: Interferon-indu 33.1 42 0.00091 28.9 2.8 52 59-110 145-202 (376)
258 PF00762 Ferrochelatase: Ferro 33.0 1.5E+02 0.0033 24.7 6.1 92 77-186 203-297 (316)
259 cd04728 ThiG Thiazole synthase 33.0 2.6E+02 0.0057 22.6 12.5 107 76-184 71-182 (248)
260 TIGR01660 narH nitrate reducta 33.0 20 0.00044 31.6 0.9 53 127-179 264-317 (492)
261 cd08579 GDPD_memb_like Glycero 33.0 2.3E+02 0.0049 21.8 9.6 68 114-185 111-198 (220)
262 COG2949 SanA Uncharacterized m 32.7 2.5E+02 0.0054 22.2 8.4 99 81-185 76-181 (235)
263 cd00405 PRAI Phosphoribosylant 32.6 1E+02 0.0022 23.7 4.7 41 98-142 73-113 (203)
264 cd05125 Mth938_2P1-like Mth938 32.6 1.5E+02 0.0033 20.7 5.2 52 136-187 39-91 (114)
265 COG0820 Predicted Fe-S-cluster 32.6 3.1E+02 0.0067 23.4 7.8 104 59-162 103-222 (349)
266 PRK10508 hypothetical protein; 32.6 1.3E+02 0.0028 25.3 5.7 43 77-124 285-327 (333)
267 cd07945 DRE_TIM_CMS Leptospira 32.5 2.8E+02 0.006 22.7 12.1 122 78-201 108-240 (280)
268 CHL00076 chlB photochlorophyll 32.4 3.7E+02 0.0081 24.1 9.6 91 98-188 116-249 (513)
269 cd03326 MR_like_1 Mandelate ra 32.3 2E+02 0.0043 24.8 6.8 77 99-179 231-313 (385)
270 PF03472 Autoind_bind: Autoind 32.2 1.8E+02 0.0038 20.3 6.7 24 79-102 1-24 (149)
271 KOG1579 Homocysteine S-methylt 32.2 3.1E+02 0.0066 23.1 8.0 87 22-108 51-171 (317)
272 cd01573 modD_like ModD; Quinol 32.2 1.5E+02 0.0033 24.2 5.8 38 118-156 172-209 (272)
273 cd02742 GH20_hexosaminidase Be 32.2 47 0.001 27.5 2.9 16 167-182 75-90 (303)
274 PRK08645 bifunctional homocyst 32.1 4.1E+02 0.0088 24.5 15.6 85 22-107 41-147 (612)
275 COG4626 Phage terminase-like p 32.0 2.4E+02 0.0052 25.6 7.3 76 109-187 408-486 (546)
276 TIGR03278 methan_mark_10 putat 31.9 3.5E+02 0.0075 23.6 10.1 111 77-190 53-179 (404)
277 KOG2281 Dipeptidyl aminopeptid 31.8 43 0.00092 31.1 2.7 49 84-132 788-837 (867)
278 cd08573 GDPD_GDE1 Glycerophosp 31.5 1.5E+02 0.0033 23.7 5.7 20 24-43 13-32 (258)
279 COG1387 HIS2 Histidinol phosph 31.3 2.7E+02 0.0058 22.1 10.6 141 26-181 18-190 (237)
280 TIGR02090 LEU1_arch isopropylm 31.3 3.3E+02 0.0072 23.2 14.1 86 111-199 138-231 (363)
281 TIGR01163 rpe ribulose-phospha 31.1 2.3E+02 0.0051 21.4 9.4 99 78-180 8-107 (210)
282 TIGR02109 PQQ_syn_pqqE coenzym 30.9 2E+02 0.0043 24.1 6.6 47 77-128 36-82 (358)
283 smart00148 PLCXc Phospholipase 30.8 45 0.00097 24.0 2.3 22 27-48 31-52 (135)
284 PF10007 DUF2250: Uncharacteri 30.8 54 0.0012 22.1 2.5 51 83-136 8-58 (92)
285 PRK00208 thiG thiazole synthas 30.7 2.9E+02 0.0063 22.4 12.6 107 76-184 71-182 (250)
286 PF08671 SinI: Anti-repressor 30.6 66 0.0014 16.8 2.3 16 24-39 3-18 (30)
287 PF01053 Cys_Met_Meta_PP: Cys/ 30.5 1.9E+02 0.0041 25.0 6.4 80 113-192 104-186 (386)
288 TIGR02804 ExbD_2 TonB system t 30.3 1.9E+02 0.0042 20.1 5.6 30 105-135 89-118 (121)
289 PRK07003 DNA polymerase III su 30.3 3.1E+02 0.0067 26.3 8.0 95 79-179 100-197 (830)
290 TIGR02764 spore_ybaN_pdaB poly 30.3 2.4E+02 0.0051 21.2 7.6 40 87-128 142-182 (191)
291 PF05378 Hydant_A_N: Hydantoin 30.2 97 0.0021 23.4 4.1 24 112-136 132-155 (176)
292 PF05690 ThiG: Thiazole biosyn 30.2 1.7E+02 0.0037 23.5 5.5 109 77-187 72-185 (247)
293 cd03527 RuBisCO_small Ribulose 30.1 1.8E+02 0.004 19.9 8.4 82 8-106 3-85 (99)
294 COG1540 Uncharacterized protei 30.0 76 0.0016 25.4 3.5 39 7-47 13-66 (252)
295 PF13380 CoA_binding_2: CoA bi 30.0 1.9E+02 0.0041 20.0 6.3 55 96-182 53-107 (116)
296 TIGR00381 cdhD CO dehydrogenas 30.0 3.7E+02 0.008 23.3 10.7 107 81-191 128-254 (389)
297 COG1168 MalY Bifunctional PLP- 29.9 1.2E+02 0.0025 26.2 4.8 15 168-182 182-196 (388)
298 PLN02880 tyrosine decarboxylas 29.9 2E+02 0.0043 25.6 6.6 26 166-191 258-283 (490)
299 PRK10200 putative racemase; Pr 29.9 2.8E+02 0.006 21.9 7.5 63 77-140 13-87 (230)
300 PRK14465 ribosomal RNA large s 29.9 3.5E+02 0.0075 23.0 9.0 86 74-159 129-219 (342)
301 cd08559 GDPD_periplasmic_GlpQ_ 29.7 2E+02 0.0043 23.6 6.2 20 23-42 14-33 (296)
302 KOG1196 Predicted NAD-dependen 29.7 52 0.0011 27.5 2.6 94 25-133 211-311 (343)
303 TIGR03278 methan_mark_10 putat 29.5 2.8E+02 0.0061 24.1 7.3 112 22-138 87-206 (404)
304 TIGR00126 deoC deoxyribose-pho 29.5 2.8E+02 0.006 21.7 13.3 156 19-182 13-180 (211)
305 PF04481 DUF561: Protein of un 29.4 3E+02 0.0064 22.0 8.7 25 22-46 25-49 (242)
306 PF00072 Response_reg: Respons 29.4 1.7E+02 0.0036 19.1 7.8 71 115-187 9-81 (112)
307 KOG0369 Pyruvate carboxylase [ 29.2 3.5E+02 0.0075 25.7 7.8 147 24-189 43-196 (1176)
308 KOG1549 Cysteine desulfurase N 29.1 1.8E+02 0.0038 25.6 5.9 72 116-189 144-223 (428)
309 COG2355 Zn-dependent dipeptida 29.1 3.5E+02 0.0075 22.7 8.3 103 25-136 150-260 (313)
310 TIGR02836 spore_IV_A stage IV 29.1 4.2E+02 0.0091 23.6 8.9 78 79-160 164-245 (492)
311 PRK13011 formyltetrahydrofolat 29.1 3.3E+02 0.0071 22.4 12.1 142 25-184 20-172 (286)
312 COG1131 CcmA ABC-type multidru 28.9 1.9E+02 0.0042 23.7 6.0 48 99-147 155-205 (293)
313 TIGR02090 LEU1_arch isopropylm 28.9 3.6E+02 0.0079 22.9 8.7 97 77-181 18-129 (363)
314 PRK09282 pyruvate carboxylase 28.8 2E+02 0.0044 26.4 6.5 103 78-182 23-141 (592)
315 TIGR03838 queuosine_YadB gluta 28.8 3.3E+02 0.0071 22.3 7.5 61 79-146 47-107 (272)
316 KOG3206 Alpha-tubulin folding 28.8 28 0.00061 27.2 1.0 13 36-48 199-211 (234)
317 COG2179 Predicted hydrolase of 28.7 1.4E+02 0.003 22.7 4.6 77 17-106 42-118 (175)
318 TIGR02080 O_succ_thio_ly O-suc 28.7 3.7E+02 0.008 22.9 10.6 76 114-189 101-178 (382)
319 PF09012 FeoC: FeoC like trans 28.6 69 0.0015 19.9 2.7 26 112-137 27-52 (69)
320 PF00749 tRNA-synt_1c: tRNA sy 28.4 2.5E+02 0.0054 23.4 6.6 64 78-148 47-110 (314)
321 PRK12323 DNA polymerase III su 28.4 2.6E+02 0.0056 26.3 7.1 80 78-163 104-185 (700)
322 TIGR03221 muco_delta muconolac 28.4 1.8E+02 0.004 19.5 4.7 49 117-165 27-87 (90)
323 cd02930 DCR_FMN 2,4-dienoyl-Co 28.3 3.6E+02 0.0079 22.7 11.8 94 59-156 205-305 (353)
324 TIGR00274 N-acetylmuramic acid 28.3 3.3E+02 0.0072 22.4 7.3 56 89-147 117-172 (291)
325 cd03770 SR_TndX_transposase Se 28.3 1.2E+02 0.0027 21.6 4.3 51 84-134 54-105 (140)
326 PRK11613 folP dihydropteroate 28.3 3.4E+02 0.0074 22.3 8.4 99 79-184 36-140 (282)
327 cd08605 GDPD_GDE5_like_1_plant 28.2 2E+02 0.0043 23.3 6.0 26 123-148 164-189 (282)
328 TIGR00126 deoC deoxyribose-pho 28.2 2.1E+02 0.0046 22.4 5.8 70 22-99 130-206 (211)
329 cd08612 GDPD_GDE4 Glycerophosp 28.2 2.5E+02 0.0054 23.0 6.6 21 166-186 250-270 (300)
330 TIGR03858 LLM_2I7G probable ox 28.1 1.9E+02 0.0041 24.1 6.0 20 78-97 286-305 (337)
331 COG0796 MurI Glutamate racemas 28.0 2.6E+02 0.0056 22.9 6.4 85 89-182 23-117 (269)
332 cd08607 GDPD_GDE5 Glycerophosp 27.9 2.3E+02 0.005 22.9 6.3 20 166-185 247-266 (290)
333 PRK14466 ribosomal RNA large s 27.9 3.2E+02 0.007 23.2 7.2 81 75-159 128-214 (345)
334 COG4301 Uncharacterized conser 27.8 2.9E+02 0.0063 22.7 6.5 117 77-204 166-287 (321)
335 PF10171 DUF2366: Uncharacteri 27.7 1.5E+02 0.0033 22.5 4.7 40 99-138 78-117 (173)
336 PF13602 ADH_zinc_N_2: Zinc-bi 27.7 53 0.0012 22.6 2.2 36 113-148 80-115 (127)
337 PF06506 PrpR_N: Propionate ca 27.7 35 0.00076 25.6 1.3 68 113-185 63-133 (176)
338 PRK12558 glutamyl-tRNA synthet 27.7 1.9E+02 0.0041 25.5 6.0 60 78-145 48-107 (445)
339 PF01475 FUR: Ferric uptake re 27.6 57 0.0012 22.6 2.4 53 83-136 9-65 (120)
340 PRK04820 rnpA ribonuclease P; 27.5 2.5E+02 0.0054 20.6 7.0 64 54-126 48-114 (145)
341 PRK05283 deoxyribose-phosphate 27.5 3.2E+02 0.0069 22.2 6.8 68 25-100 148-227 (257)
342 PRK10997 yieM hypothetical pro 27.4 2.3E+02 0.005 25.4 6.5 67 82-148 398-469 (487)
343 KOG0173 20S proteasome, regula 27.4 56 0.0012 26.3 2.4 24 16-39 178-201 (271)
344 PRK00912 ribonuclease P protei 27.3 1.3E+02 0.0028 23.8 4.6 89 118-206 69-168 (237)
345 PRK11840 bifunctional sulfur c 27.1 3.9E+02 0.0084 22.6 9.8 74 76-150 145-219 (326)
346 COG0352 ThiE Thiamine monophos 27.1 2.3E+02 0.0049 22.3 5.8 53 130-185 105-166 (211)
347 PRK06361 hypothetical protein; 27.1 2.9E+02 0.0063 21.1 13.6 145 25-187 11-171 (212)
348 PRK07027 cobalamin biosynthesi 27.0 1.7E+02 0.0036 20.8 4.7 62 77-145 13-74 (126)
349 PRK13010 purU formyltetrahydro 27.0 3.6E+02 0.0078 22.2 13.8 143 26-184 23-176 (289)
350 PRK11858 aksA trans-homoaconit 27.0 4E+02 0.0087 22.8 11.6 121 78-201 109-237 (378)
351 PRK05904 coproporphyrinogen II 26.9 3.9E+02 0.0085 22.6 8.8 28 77-105 166-193 (353)
352 PF07287 DUF1446: Protein of u 26.8 32 0.00069 29.4 1.0 28 150-179 73-100 (362)
353 cd07948 DRE_TIM_HCS Saccharomy 26.8 3.4E+02 0.0074 21.9 13.5 26 20-45 18-43 (262)
354 PF05913 DUF871: Bacterial pro 26.8 43 0.00092 28.6 1.8 148 22-187 12-179 (357)
355 COG0135 TrpF Phosphoribosylant 26.7 88 0.0019 24.5 3.4 42 89-137 69-110 (208)
356 cd00668 Ile_Leu_Val_MetRS_core 26.7 1.1E+02 0.0023 25.3 4.1 49 80-131 81-131 (312)
357 CHL00200 trpA tryptophan synth 26.7 3.5E+02 0.0076 22.0 7.4 16 167-182 134-149 (263)
358 COG1242 Predicted Fe-S oxidore 26.6 3.8E+02 0.0081 22.3 8.3 87 59-161 182-268 (312)
359 cd07153 Fur_like Ferric uptake 26.6 1.2E+02 0.0025 20.7 3.8 27 110-136 32-58 (116)
360 PRK10060 RNase II stability mo 26.5 4.5E+02 0.0097 24.3 8.5 70 113-185 540-619 (663)
361 cd07938 DRE_TIM_HMGL 3-hydroxy 26.5 2.3E+02 0.0051 23.0 6.0 95 82-181 20-131 (274)
362 PRK08247 cystathionine gamma-s 26.5 3.4E+02 0.0074 22.8 7.3 62 129-190 116-179 (366)
363 PRK14467 ribosomal RNA large s 26.4 4E+02 0.0088 22.6 10.3 132 59-191 101-264 (348)
364 cd07940 DRE_TIM_IPMS 2-isoprop 26.3 3.4E+02 0.0074 21.8 10.3 99 77-183 16-133 (268)
365 cd05006 SIS_GmhA Phosphoheptos 26.3 1.2E+02 0.0026 22.5 4.1 48 97-147 100-147 (177)
366 PLN02590 probable tyrosine dec 26.2 4.1E+02 0.0089 24.1 8.0 26 166-191 306-331 (539)
367 PRK14467 ribosomal RNA large s 26.0 4.1E+02 0.0089 22.6 8.8 91 98-188 208-329 (348)
368 cd00419 Ferrochelatase_C Ferro 26.0 2.5E+02 0.0055 20.1 8.4 52 77-128 37-91 (135)
369 TIGR00737 nifR3_yhdG putative 25.9 3.8E+02 0.0083 22.1 12.3 124 22-157 73-222 (319)
370 cd00814 MetRS_core catalytic c 25.8 1E+02 0.0023 25.5 4.0 47 80-129 68-114 (319)
371 PF07905 PucR: Purine cataboli 25.7 2.4E+02 0.0051 19.7 5.3 21 164-184 86-106 (123)
372 PRK15108 biotin synthase; Prov 25.7 4.1E+02 0.0089 22.4 10.2 109 77-189 75-196 (345)
373 cd08580 GDPD_Rv2277c_like Glyc 25.6 1.2E+02 0.0026 24.5 4.2 20 166-185 218-238 (263)
374 COG1797 CobB Cobyrinic acid a, 25.6 3.4E+02 0.0073 24.0 7.0 72 112-192 199-286 (451)
375 PRK04165 acetyl-CoA decarbonyl 25.6 4.8E+02 0.01 23.2 11.4 100 77-185 101-209 (450)
376 cd03324 rTSbeta_L-fuconate_deh 25.5 4.5E+02 0.0098 22.9 8.3 82 99-184 266-352 (415)
377 cd08606 GDPD_YPL110cp_fungi Gl 25.4 3.6E+02 0.0079 21.7 8.5 66 120-185 156-253 (286)
378 PRK14041 oxaloacetate decarbox 25.2 3.4E+02 0.0073 24.2 7.1 99 78-182 22-140 (467)
379 PF01978 TrmB: Sugar-specific 25.2 1.3E+02 0.0028 18.4 3.5 24 111-134 34-57 (68)
380 KOG3705 Glycoprotein 6-alpha-L 25.1 2.9E+02 0.0063 24.2 6.3 67 82-149 346-426 (580)
381 COG1625 Fe-S oxidoreductase, r 25.0 2.3E+02 0.0049 24.8 5.8 113 27-139 97-223 (414)
382 COG0159 TrpA Tryptophan syntha 25.0 3.8E+02 0.0083 21.9 7.4 17 168-184 138-154 (265)
383 COG1082 IolE Sugar phosphate i 25.0 1.9E+02 0.0041 22.8 5.3 67 119-186 20-106 (274)
384 PF15513 DUF4651: Domain of un 24.9 1.8E+02 0.0039 18.1 3.8 29 79-109 3-31 (62)
385 PLN03228 methylthioalkylmalate 24.8 4E+02 0.0088 24.0 7.6 103 76-185 101-230 (503)
386 PF10941 DUF2620: Protein of u 24.7 96 0.0021 21.9 2.9 24 118-142 85-108 (117)
387 PRK02227 hypothetical protein; 24.7 3.7E+02 0.0081 21.6 7.6 136 31-180 14-183 (238)
388 COG0419 SbcC ATPase involved i 24.5 1.9E+02 0.0042 27.9 5.9 55 85-141 826-885 (908)
389 cd01821 Rhamnogalacturan_acety 24.5 2.2E+02 0.0047 21.3 5.3 20 168-187 98-117 (198)
390 cd00338 Ser_Recombinase Serine 24.4 1.6E+02 0.0035 20.4 4.3 51 84-135 51-102 (137)
391 PLN02231 alanine transaminase 24.2 3.4E+02 0.0073 24.5 7.1 14 168-181 295-308 (534)
392 COG0761 lytB 4-Hydroxy-3-methy 24.1 1.9E+02 0.0041 24.0 4.9 18 28-45 80-97 (294)
393 PF06792 UPF0261: Uncharacteri 24.1 2.9E+02 0.0064 24.1 6.3 58 85-148 198-269 (403)
394 PRK08462 biotin carboxylase; V 24.0 65 0.0014 28.0 2.5 44 140-185 66-109 (445)
395 COG3737 Uncharacterized conser 23.9 1.8E+02 0.004 20.7 4.2 50 138-187 56-106 (127)
396 cd08572 GDPD_GDE5_like Glycero 23.9 2.8E+02 0.006 22.7 6.1 33 116-148 165-198 (293)
397 PRK14017 galactonate dehydrata 23.9 4.6E+02 0.0099 22.3 10.9 117 80-206 160-280 (382)
398 PRK11170 nagA N-acetylglucosam 23.8 4.7E+02 0.01 22.4 9.7 31 118-148 179-209 (382)
399 PRK10826 2-deoxyglucose-6-phos 23.8 2.9E+02 0.0062 21.2 5.9 36 112-148 93-128 (222)
400 cd01321 ADGF Adenosine deamina 23.8 4.5E+02 0.0097 22.2 10.9 60 77-136 103-170 (345)
401 PF00825 Ribonuclease_P: Ribon 23.7 2.4E+02 0.0051 19.3 4.9 62 55-125 43-108 (111)
402 cd02933 OYE_like_FMN Old yello 23.7 4.4E+02 0.0096 22.1 12.7 15 29-43 157-171 (338)
403 COG0546 Gph Predicted phosphat 23.6 3E+02 0.0066 21.2 6.0 87 85-179 69-161 (220)
404 PRK13870 transcriptional regul 23.5 3.7E+02 0.0081 21.2 7.5 80 78-179 16-111 (234)
405 PF01680 SOR_SNZ: SOR/SNZ fami 23.5 44 0.00095 25.7 1.1 19 89-107 87-105 (208)
406 PRK08727 hypothetical protein; 23.4 2.5E+02 0.0054 22.0 5.5 90 85-178 82-180 (233)
407 cd01974 Nitrogenase_MoFe_beta 23.4 5E+02 0.011 22.6 8.3 58 98-155 120-192 (435)
408 PRK09061 D-glutamate deacylase 23.4 5.4E+02 0.012 23.0 9.9 105 25-136 170-284 (509)
409 PLN02775 Probable dihydrodipic 23.4 4.3E+02 0.0093 21.9 8.3 58 87-148 68-125 (286)
410 PRK07764 DNA polymerase III su 23.2 5.2E+02 0.011 24.9 8.3 96 79-180 101-199 (824)
411 PRK11359 cyclic-di-GMP phospho 23.1 5.7E+02 0.012 23.8 8.7 69 113-184 677-755 (799)
412 PF09639 YjcQ: YjcQ protein; 23.1 69 0.0015 21.2 2.0 24 114-137 25-48 (88)
413 PTZ00437 glutaminyl-tRNA synth 23.0 3.9E+02 0.0085 24.5 7.1 63 78-148 97-159 (574)
414 PRK14468 ribosomal RNA large s 22.9 4.7E+02 0.01 22.1 9.4 74 75-148 118-199 (343)
415 PF00290 Trp_syntA: Tryptophan 22.9 1.3E+02 0.0028 24.4 3.8 69 113-183 71-146 (259)
416 PRK14569 D-alanyl-alanine synt 22.8 1.7E+02 0.0036 24.0 4.6 39 168-206 73-111 (296)
417 PF04412 DUF521: Protein of un 22.8 2.9E+02 0.0064 24.0 6.1 42 84-127 272-316 (400)
418 PRK15005 universal stress prot 22.6 2.7E+02 0.0059 19.3 6.3 28 160-187 90-117 (144)
419 TIGR02026 BchE magnesium-proto 22.5 1.2E+02 0.0027 26.9 4.0 66 111-178 320-392 (497)
420 COG0623 FabI Enoyl-[acyl-carri 22.4 1.7E+02 0.0038 23.6 4.3 22 22-43 17-38 (259)
421 COG0422 ThiC Thiamine biosynth 22.2 5.3E+02 0.011 22.5 9.1 97 76-193 136-233 (432)
422 TIGR03471 HpnJ hopanoid biosyn 22.2 5.4E+02 0.012 22.6 10.5 108 76-187 225-346 (472)
423 COG0325 Predicted enzyme with 22.2 4.1E+02 0.0089 21.2 7.5 60 75-135 97-161 (228)
424 TIGR00463 gltX_arch glutamyl-t 22.1 4.3E+02 0.0092 24.2 7.2 63 77-147 138-200 (560)
425 KOG1185 Thiamine pyrophosphate 22.0 2.4E+02 0.0053 25.3 5.5 28 166-194 234-261 (571)
426 COG0735 Fur Fe2+/Zn2+ uptake r 22.0 1.5E+02 0.0033 21.5 3.8 28 109-136 51-78 (145)
427 PF14615 Rsa3: Ribosome-assemb 22.0 66 0.0014 18.8 1.4 19 24-42 29-47 (47)
428 TIGR03820 lys_2_3_AblA lysine- 22.0 5.1E+02 0.011 22.7 7.5 112 22-148 139-271 (417)
429 COG4034 Uncharacterized protei 21.9 2.5E+02 0.0053 23.2 5.1 76 85-161 160-245 (328)
430 PRK06740 histidinol-phosphatas 21.8 4.8E+02 0.01 21.9 9.7 96 85-181 156-288 (331)
431 TIGR01210 conserved hypothetic 21.8 4.7E+02 0.01 21.7 12.5 129 59-188 18-179 (313)
432 TIGR00228 ruvC crossover junct 21.7 1.4E+02 0.003 22.3 3.5 19 168-186 84-102 (156)
433 cd08567 GDPD_SpGDE_like Glycer 21.7 1.8E+02 0.0039 23.0 4.5 71 115-185 148-239 (263)
434 PF05499 DMAP1: DNA methyltran 21.6 3.2E+02 0.0069 20.9 5.4 38 79-126 102-139 (176)
435 PTZ00402 glutamyl-tRNA synthet 21.6 4.8E+02 0.01 24.1 7.4 62 77-146 97-159 (601)
436 PF06819 Arc_PepC: Archaeal Pe 21.5 2.5E+02 0.0055 19.6 4.5 51 80-130 55-105 (110)
437 PRK07994 DNA polymerase III su 21.5 5.3E+02 0.011 24.1 7.8 79 79-163 100-180 (647)
438 PF02679 ComA: (2R)-phospho-3- 21.4 74 0.0016 25.6 2.1 29 5-40 42-70 (244)
439 cd02801 DUS_like_FMN Dihydrour 21.4 3.8E+02 0.0083 20.6 9.8 125 22-158 65-214 (231)
440 PLN02444 HMP-P synthase 21.4 4.6E+02 0.01 24.1 7.1 95 77-193 296-390 (642)
441 PRK05718 keto-hydroxyglutarate 21.3 3.5E+02 0.0075 21.2 5.9 21 22-42 25-45 (212)
442 COG3454 Metal-dependent hydrol 21.3 2.3E+02 0.0049 24.1 4.9 70 111-183 139-229 (377)
443 PLN02607 1-aminocyclopropane-1 21.3 4.1E+02 0.0088 23.2 6.9 19 168-186 224-242 (447)
444 PRK04132 replication factor C 21.2 6.5E+02 0.014 24.4 8.5 95 79-179 609-708 (846)
445 PRK14463 ribosomal RNA large s 21.2 3.6E+02 0.0078 22.9 6.3 60 75-136 128-191 (349)
446 PRK07114 keto-hydroxyglutarate 21.0 4.2E+02 0.0092 20.9 8.8 91 79-182 25-117 (222)
447 PLN03186 DNA repair protein RA 20.9 2.2E+02 0.0047 24.1 5.0 15 168-182 254-268 (342)
448 TIGR03471 HpnJ hopanoid biosyn 20.9 1.3E+02 0.0028 26.5 3.8 68 111-180 320-394 (472)
449 TIGR02384 RelB_DinJ addiction 20.8 78 0.0017 20.8 1.8 46 80-125 10-65 (83)
450 COG1217 TypA Predicted membran 20.8 2.3E+02 0.0049 25.5 5.0 60 37-104 69-163 (603)
451 COG0076 GadB Glutamate decarbo 20.7 4.1E+02 0.009 23.5 6.8 50 77-127 160-209 (460)
452 COG3623 SgaU Putative L-xylulo 20.7 1.5E+02 0.0033 23.9 3.7 43 2-45 69-117 (287)
453 COG1992 Uncharacterized conser 20.7 1.4E+02 0.003 22.9 3.3 54 126-186 58-118 (181)
454 COG0332 FabH 3-oxoacyl-[acyl-c 20.7 1.5E+02 0.0033 24.9 3.9 28 81-108 223-252 (323)
455 PF05221 AdoHcyase: S-adenosyl 20.6 1.9E+02 0.0041 23.7 4.3 54 130-185 44-100 (268)
456 KOG3085 Predicted hydrolase (H 20.6 2.7E+02 0.0059 22.3 5.2 61 113-176 115-180 (237)
457 PLN02907 glutamate-tRNA ligase 20.6 4E+02 0.0088 25.2 7.0 63 76-146 257-319 (722)
458 TIGR03820 lys_2_3_AblA lysine- 20.5 5.9E+02 0.013 22.4 8.8 108 79-190 139-258 (417)
459 CHL00040 rbcL ribulose-1,5-bis 20.3 4.6E+02 0.0099 23.5 6.9 111 77-192 179-302 (475)
460 cd04734 OYE_like_3_FMN Old yel 20.3 5.3E+02 0.011 21.7 12.7 40 117-156 274-314 (343)
461 TIGR02803 ExbD_1 TonB system t 20.2 2.9E+02 0.0062 19.2 4.8 52 78-134 67-118 (122)
462 cd00950 DHDPS Dihydrodipicolin 20.2 4.7E+02 0.01 21.1 10.2 66 78-148 109-175 (284)
463 PRK08599 coproporphyrinogen II 20.1 3.8E+02 0.0083 22.7 6.4 35 112-146 134-173 (377)
464 TIGR01205 D_ala_D_alaTIGR D-al 20.1 1.5E+02 0.0033 24.1 3.9 18 85-105 21-38 (315)
465 COG2896 MoaA Molybdenum cofact 20.1 5.4E+02 0.012 21.7 10.0 117 22-148 44-175 (322)
466 PF11821 DUF3341: Protein of u 20.1 2E+02 0.0043 21.9 4.1 37 22-58 11-47 (173)
467 PF02629 CoA_binding: CoA bind 20.0 1.4E+02 0.0031 19.7 3.1 20 22-41 71-90 (96)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.8e-53 Score=339.82 Aligned_cols=187 Identities=29% Similarity=0.392 Sum_probs=170.6
Q ss_pred CcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceecC
Q 040616 2 EVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRYE 70 (208)
Q Consensus 2 ~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~~ 70 (208)
+||.||||||++++ .+.+.+.+.+|++.|||+||||..|| ||+.+|+ +||+||++..
T Consensus 13 ~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelFittKvw~~-- 80 (280)
T COG0656 13 EIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELFITTKVWPS-- 80 (280)
T ss_pred cccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeEEEeecCCc--
Confidence 58999999999842 22388999999999999999999999 9999997 9999999975
Q ss_pred CCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 71 DGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK--IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 71 ~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+.+++.+.+++++||++||+||+|||++|||.+. ..+.++|++|++++++|+||+||||||+.++++++++.
T Consensus 81 ------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~ 154 (280)
T COG0656 81 ------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSL 154 (280)
T ss_pred ------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHh
Confidence 4678999999999999999999999999999763 23689999999999999999999999999999999987
Q ss_pred --CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccc-cCCCCCcccchhhcCCCC
Q 040616 149 --HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGF-LSSGPKLIHLSATKGCIS 208 (208)
Q Consensus 149 --~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~-l~~~~~~~~~a~~~~~~~ 208 (208)
..|.++|++|||+.+ +.+++++|+++||.++|||||+.|. +.+++.+.+||++||+|+
T Consensus 155 ~~~~p~~NQIe~hp~~~--q~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~t~ 215 (280)
T COG0656 155 AKVKPAVNQIEYHPYLR--QPELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGKTP 215 (280)
T ss_pred cCCCCceEEEEeccCCC--cHHHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCCCH
Confidence 559999999999999 5569999999999999999999765 888999999999999974
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.5e-51 Score=338.18 Aligned_cols=195 Identities=41% Similarity=0.588 Sum_probs=177.2
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce----------EEEEeecceecC
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR----------VKLTTKFGIRYE 70 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------~~i~tK~~~~~~ 70 (208)
++||+||||||.+|+.+ ...+++++.+++++|+++|||+||||+.||.|.||+.+|+ ++|+||++....
T Consensus 11 l~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~~~ 89 (316)
T COG0667 11 LKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYRPG 89 (316)
T ss_pred ceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccCCC
Confidence 47899999999998652 2334557888999999999999999999999999999997 999999998764
Q ss_pred C-CCc-cCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 71 D-GKY-SYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 71 ~-~~~-~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+ +.. ..+.+++.|+++++.||+||||||||+|++|+||+..+.++++++|.+|+++|+||+||+||++++++.++++.
T Consensus 90 ~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~ 169 (316)
T COG0667 90 DPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAV 169 (316)
T ss_pred CCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHh
Confidence 3 222 26789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCC
Q 040616 149 -HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPK 196 (208)
Q Consensus 149 -~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~ 196 (208)
.+++++|.+||+++|..+.+++++|+++||++++|+||++|+|++++.
T Consensus 170 ~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~ 218 (316)
T COG0667 170 AAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYL 218 (316)
T ss_pred cCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcC
Confidence 599999999999998777789999999999999999999999998754
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.7e-50 Score=327.58 Aligned_cols=194 Identities=45% Similarity=0.687 Sum_probs=176.1
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
++||++|||||.+.. |+...+++++.+++++|+++|+|+||||++||+|.||..+|+ +||+||++...
T Consensus 22 l~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~ 100 (336)
T KOG1575|consen 22 LKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDY 100 (336)
T ss_pred ceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccC
Confidence 579999999985543 444478999999999999999999999999999999999998 99999999766
Q ss_pred CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcC
Q 040616 70 EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIH 149 (208)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 149 (208)
.+......+...+.+.++.|+++|+++|||+|++||+|+..++++++++|.+++++|+||+||+|+++++++.+++...
T Consensus 101 -~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~ 179 (336)
T KOG1575|consen 101 -GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVA 179 (336)
T ss_pred -CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhc
Confidence 2222456778889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C--ccEEeeccCcCCCCccc-cHHHHHHHhCCcEEEcccCcccccCCCCC
Q 040616 150 P--ITVVRLEWSLRSRDVEE-EIVPTCRELGIGIVAYSLLGRGFLSSGPK 196 (208)
Q Consensus 150 ~--~~~~q~~~~~~~~~~~~-~~l~~~~~~gi~v~a~~pl~~G~l~~~~~ 196 (208)
+ +.++|.+||++.|..++ ++++.|++.||++++||||++|+|++++.
T Consensus 180 ~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~ 229 (336)
T KOG1575|consen 180 PIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYK 229 (336)
T ss_pred CCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcc
Confidence 6 99999999999998444 69999999999999999999999998644
No 4
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.3e-49 Score=318.96 Aligned_cols=186 Identities=26% Similarity=0.340 Sum_probs=171.2
Q ss_pred CcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------------EEEEeecc
Q 040616 2 EVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------------VKLTTKFG 66 (208)
Q Consensus 2 ~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------------~~i~tK~~ 66 (208)
+||.||||||+. ++.++.+.++.|++.||||||||..|+ +|+.+|+ +||+||+|
T Consensus 14 ~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTSKlw 82 (300)
T KOG1577|consen 14 KMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITSKLW 82 (300)
T ss_pred ccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchhhheeeeccC
Confidence 699999999984 567899999999999999999999999 9999998 99999999
Q ss_pred eecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC----------------CCHHHHHHHHHHHHHcCCcc
Q 040616 67 IRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK----------------IPIEVTIGELKRLVEEGKIK 130 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~----------------~~~~~~~~~l~~l~~~G~ir 130 (208)
+. ...++.++.++++||++||+||+|||++|||-.. .++.++|++|++++++|++|
T Consensus 83 ~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~r 154 (300)
T KOG1577|consen 83 PT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVR 154 (300)
T ss_pred cc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCce
Confidence 75 3679999999999999999999999999999442 35778999999999999999
Q ss_pred eEeeCcccHHHHHHHhhc--CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccc----cCCCCCcccchhhc
Q 040616 131 HIDLSEASASTIRRAHTI--HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGF----LSSGPKLIHLSATK 204 (208)
Q Consensus 131 ~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~----l~~~~~~~~~a~~~ 204 (208)
+||||||+..+++++++. .+|.++|+++||+.+ +.+++++|+++||.|.|||||+++. +..++.+.+||+||
T Consensus 155 sIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~ 232 (300)
T KOG1577|consen 155 SIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKY 232 (300)
T ss_pred EeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHh
Confidence 999999999999999987 789999999999999 7789999999999999999999864 47789999999999
Q ss_pred CCCC
Q 040616 205 GCIS 208 (208)
Q Consensus 205 ~~~~ 208 (208)
++|+
T Consensus 233 ~kt~ 236 (300)
T KOG1577|consen 233 NKTP 236 (300)
T ss_pred CCCH
Confidence 9984
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.8e-47 Score=316.28 Aligned_cols=190 Identities=23% Similarity=0.333 Sum_probs=165.4
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
++||+||||||++ ++...+++++.+++++|+++|||+||||+.||.|.||+.+|+ ++|+||++...
T Consensus 9 ~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~~ 85 (317)
T TIGR01293 9 LRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWGG 85 (317)
T ss_pred CeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccCC
Confidence 4699999999974 233456788999999999999999999999999999999976 99999986421
Q ss_pred CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-
Q 040616 70 EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI- 148 (208)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~- 148 (208)
. .......+++.+++++++||++|+|||||+|++|+|++..+.+++|++|++|+++|+||+||+|||+.+++.++...
T Consensus 86 ~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 164 (317)
T TIGR01293 86 K-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVA 164 (317)
T ss_pred C-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHH
Confidence 1 01113468999999999999999999999999999998888999999999999999999999999999998876543
Q ss_pred -----CCccEEeeccCcCCCCc-cccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 149 -----HPITVVRLEWSLRSRDV-EEEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 149 -----~~~~~~q~~~~~~~~~~-~~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
.+++++|.+||++++.. +.+++++|+++||++++|+||++|+|+++
T Consensus 165 ~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~ 216 (317)
T TIGR01293 165 RQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGK 216 (317)
T ss_pred HHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCC
Confidence 47889999999999863 55899999999999999999999998864
No 6
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.7e-47 Score=309.31 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=168.9
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
++||.||||||++ +.+++.+++++|++.|||+||||+.|| +|..+|+ +||+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 4799999999987 346789999999999999999999999 7888876 9999998632
Q ss_pred CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 70 EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK--IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
..+++.+++++++||+||++||||+|++|+|++. .+.+++|++|++++++||||+||+|||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3678999999999999999999999999999763 5678999999999999999999999999999999877
Q ss_pred c---CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCCCC
Q 040616 148 I---HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGCIS 208 (208)
Q Consensus 148 ~---~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~~~ 208 (208)
. .+++++|++||++.+ +.+++++|+++||++++|+||++|.+..++.+.++|+++|+|.
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~--~~~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~~~~~s~ 203 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQ--NRKVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAAKHNATP 203 (267)
T ss_pred hcCCCCCeEEeeecCCCCC--cHHHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHHHhCCCH
Confidence 5 368999999999998 4689999999999999999999998877788999999999873
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=6.5e-47 Score=317.32 Aligned_cols=191 Identities=28% Similarity=0.473 Sum_probs=164.4
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCC--Cchhhhcce------------EEEEeecc
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGP--HTNEILLAR------------VKLTTKFG 66 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~e~~~g~------------~~i~tK~~ 66 (208)
++||+||||||+. ++...+.+++.++|++|+++|||+||||+.||+ |.+|+.+|+ +||+||++
T Consensus 23 ~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g 99 (346)
T PRK09912 23 LRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAG 99 (346)
T ss_pred cccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEec
Confidence 4799999999973 333345677899999999999999999999995 889988865 89999987
Q ss_pred eecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 67 IRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
....++......+++.+++++++||++|||||||+|++|+|++..+.+++|++|++|+++|+||+||||||++++++++.
T Consensus 100 ~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~ 179 (346)
T PRK09912 100 YDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMV 179 (346)
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHH
Confidence 53212222234679999999999999999999999999999988889999999999999999999999999999888765
Q ss_pred hc-----CCccEEeeccCcCCCCcc-ccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 147 TI-----HPITVVRLEWSLRSRDVE-EEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 147 ~~-----~~~~~~q~~~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+++
T Consensus 180 ~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 180 ELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 42 478899999999998644 4799999999999999999999999864
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-46 Score=307.42 Aligned_cols=207 Identities=27% Similarity=0.448 Sum_probs=176.9
Q ss_pred CCcCccccccccccc--CCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce--------EEEEeecceecC
Q 040616 1 LEVSGQGLRCMGMFA--FYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR--------VKLTTKFGIRYE 70 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~--------~~i~tK~~~~~~ 70 (208)
++||+||||||++|+ .|+...+++++.++++.|+++|||+||||+.||+|.+|+.+|+ +||+||++....
T Consensus 15 ~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~R~~~~i~TK~g~~~~ 94 (290)
T PRK10376 15 RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPYPDDLTIVTKVGARRG 94 (290)
T ss_pred eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcCCCeEEEEeeecccCC
Confidence 469999999999975 4666557788999999999999999999999999999998876 999999875332
Q ss_pred C-CCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHH
Q 040616 71 D-GKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-----KIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRR 144 (208)
Q Consensus 71 ~-~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 144 (208)
. +.+....+++.+++++++||++|+|||||+|++|+++. ..+.+++|++|++|+++||||+||+|||+++++++
T Consensus 95 ~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~ 174 (290)
T PRK10376 95 EDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAE 174 (290)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHH
Confidence 1 12334678999999999999999999999999887421 23578999999999999999999999999999999
Q ss_pred HhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCCCC
Q 040616 145 AHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGCIS 208 (208)
Q Consensus 145 ~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~~~ 208 (208)
+.+..+++++|++||++++. ..+++++|+++||++++|+||+++.......+.++|+++|+|.
T Consensus 175 ~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~~~~~l~~ia~~~~~t~ 237 (290)
T PRK10376 175 ARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATP 237 (290)
T ss_pred HHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChhhhHHHHHHHHHhCCCH
Confidence 99888999999999999985 3579999999999999999998653333456788999999873
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.6e-46 Score=303.62 Aligned_cols=201 Identities=40% Similarity=0.569 Sum_probs=178.9
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce----------EEEEeecceecC
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR----------VKLTTKFGIRYE 70 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------~~i~tK~~~~~~ 70 (208)
++||.||||||+++..| .+.+++.+++++|++.|||+||||+.||+|.+|+.+|+ ++|+||++....
T Consensus 9 ~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~ 85 (285)
T cd06660 9 LKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPG 85 (285)
T ss_pred ceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCC
Confidence 46999999999987544 46788999999999999999999999999999999987 999999986532
Q ss_pred CCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-
Q 040616 71 DGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIP-IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI- 148 (208)
Q Consensus 71 ~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~- 148 (208)
.. .+.+++.+++++++||++|++||||+|++|+|+.... ..++|++|++++++|+||+||+|||+.+.+.++++.
T Consensus 86 ~~---~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 162 (285)
T cd06660 86 DG---RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAA 162 (285)
T ss_pred CC---CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhh
Confidence 11 3478999999999999999999999999999987766 889999999999999999999999999999999988
Q ss_pred -CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCC-------------cccchhhcCCC
Q 040616 149 -HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPK-------------LIHLSATKGCI 207 (208)
Q Consensus 149 -~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~-------------~~~~a~~~~~~ 207 (208)
.+|+++|++||++++....+++++|+++||++++|+||++|.+..++. +..+++++++|
T Consensus 163 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 235 (285)
T cd06660 163 GVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVT 235 (285)
T ss_pred CCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCC
Confidence 899999999999999755579999999999999999999999886644 23677787776
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.7e-45 Score=305.20 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=169.2
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
++||.||||||++|+.|+. .+++++.+++++|+++|||+||||+.||.|.+|..+|+ +||+||++...
T Consensus 9 ~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~~ 87 (314)
T PLN02587 9 LKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRYG 87 (314)
T ss_pred CcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccCC
Confidence 4699999999999876653 46788999999999999999999999999999999985 99999998432
Q ss_pred CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 70 EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK---IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
. ..+.+++.+++++++||++||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||+++++..+.
T Consensus 88 ~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~ 163 (314)
T PLN02587 88 E----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVL 163 (314)
T ss_pred C----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHH
Confidence 1 135689999999999999999999999999999643 346789999999999999999999999998887776
Q ss_pred hc---CCccE--EeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCC----------------cccchhhcC
Q 040616 147 TI---HPITV--VRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPK----------------LIHLSATKG 205 (208)
Q Consensus 147 ~~---~~~~~--~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~----------------~~~~a~~~~ 205 (208)
.. ..+++ +|+.||+.++.. .+++++|+++||++++|+||++|+|+++.. +.++|+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 242 (314)
T PLN02587 164 DRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCKEKG 242 (314)
T ss_pred HhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 53 22344 578888877643 489999999999999999999999986521 235788888
Q ss_pred CC
Q 040616 206 CI 207 (208)
Q Consensus 206 ~~ 207 (208)
+|
T Consensus 243 ~s 244 (314)
T PLN02587 243 KN 244 (314)
T ss_pred CC
Confidence 86
No 11
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.3e-45 Score=307.18 Aligned_cols=190 Identities=26% Similarity=0.339 Sum_probs=162.1
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCC-------CCchhhhcce----------EEEEe
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYG-------PHTNEILLAR----------VKLTT 63 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~~e~~~g~----------~~i~t 63 (208)
++||.||||||++|+ ..+++++.++++.|+++|||+||||+.|| .|.||..+|+ ++|+|
T Consensus 11 ~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i~T 86 (346)
T PRK10625 11 LEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLIIAS 86 (346)
T ss_pred CccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEEEc
Confidence 479999999999864 34678899999999999999999999998 4789999885 99999
Q ss_pred ecceecCC-CC---ccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-----------------CCCHHHHHHHHHH
Q 040616 64 KFGIRYED-GK---YSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-----------------KIPIEVTIGELKR 122 (208)
Q Consensus 64 K~~~~~~~-~~---~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----------------~~~~~~~~~~l~~ 122 (208)
|++..... +. .....+++.+++++++||++|||||||+|++|||++ ..+++++|++|++
T Consensus 87 K~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~ 166 (346)
T PRK10625 87 KVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAE 166 (346)
T ss_pred ccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHH
Confidence 98642210 00 012468999999999999999999999999999964 2467899999999
Q ss_pred HHHcCCcceEeeCcccHHHHHHHhhc------CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 123 LVEEGKIKHIDLSEASASTIRRAHTI------HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 123 l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
|+++|+||+||+|||+.+++.+++.. ..+.++|.+||++++..+.+++++|+++||++++|+||++|+|+++
T Consensus 167 l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~ 244 (346)
T PRK10625 167 QQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGK 244 (346)
T ss_pred HHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCC
Confidence 99999999999999999988776542 2478899999999987666899999999999999999999998764
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.1e-45 Score=302.09 Aligned_cols=197 Identities=34% Similarity=0.473 Sum_probs=169.1
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceecCCCC
Q 040616 5 GQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRYEDGK 73 (208)
Q Consensus 5 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~~~~~ 73 (208)
+||||||++++. ..+++++.++++.|++.|||+||||+.||+|.+|+.+|+ ++|+||+ ...+.
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~---~~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKV---YGDGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEE---ESSSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccc---ccccc
Confidence 589999999643 568899999999999999999999999988899999998 9999999 12233
Q ss_pred ccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHH--hhcCC
Q 040616 74 YSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIP-IEVTIGELKRLVEEGKIKHIDLSEASASTIRRA--HTIHP 150 (208)
Q Consensus 74 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~~ 150 (208)
+....+++.+++++++||++|++||||+|++|+|+...+ ..++|++|++|+++|+||+||||||++++++++ ....+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 446789999999999999999999999999999999888 999999999999999999999999999999999 45578
Q ss_pred ccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCC--------------------CcccchhhcCCC
Q 040616 151 ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGP--------------------KLIHLSATKGCI 207 (208)
Q Consensus 151 ~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~--------------------~~~~~a~~~~~~ 207 (208)
|+++|++||++.+....+++++|+++||++++|+||++|.|.++. .+.++++++|+|
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s 231 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVS 231 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSS
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccc
Confidence 999999999997666779999999999999999999999987553 256777777765
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1e-44 Score=297.26 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=159.5
Q ss_pred CCcCcccccccccccC-------CCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------EEEEee
Q 040616 1 LEVSGQGLRCMGMFAF-------YGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------VKLTTK 64 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK 64 (208)
++||+||||||++|+. |+ ..+++++.++++.|++.|||+||||+.|| .||..+|+ ++|+||
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~tk 79 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLSTV 79 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeecccc
Confidence 4799999999999853 33 35788899999999999999999999997 79999996 567776
Q ss_pred cceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCH-HHHHHHHHHHHHcCCcceEeeCcccHHHH
Q 040616 65 FGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPI-EVTIGELKRLVEEGKIKHIDLSEASASTI 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 142 (208)
.. ..+++.+++++++||+||||||||+|++|+|++. .+. +++|++|++|+++||||+||+|||+++++
T Consensus 80 ~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 149 (292)
T PRK14863 80 RA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDP 149 (292)
T ss_pred cc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHH
Confidence 32 3468999999999999999999999999999763 233 57899999999999999999999999999
Q ss_pred HHHhhcCCccEEeeccCcCCCCcc-ccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 143 RRAHTIHPITVVRLEWSLRSRDVE-EEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 143 ~~~~~~~~~~~~q~~~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
.++....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|...
T Consensus 150 ~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 150 VGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 888888899999999999998643 3699999999999999999999998753
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4e-43 Score=285.89 Aligned_cols=185 Identities=23% Similarity=0.243 Sum_probs=163.8
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
++||.||||||++ +++++.+++++|++.|+|+||||+.|| +|+.+|+ ++|+||++.
T Consensus 13 ~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~tK~~~-- 79 (275)
T PRK11565 13 NVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFITTKLWN-- 79 (275)
T ss_pred CccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEEEEecC--
Confidence 4689999999986 457799999999999999999999998 7888885 999999863
Q ss_pred CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 70 EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.+++.+++++++||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||+|||+++++++++..
T Consensus 80 --------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 151 (275)
T PRK11565 80 --------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDE 151 (275)
T ss_pred --------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHh
Confidence 2468999999999999999999999999997653 4789999999999999999999999999999998765
Q ss_pred --CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccc--cCCCCCcccchhhcCCCC
Q 040616 149 --HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGF--LSSGPKLIHLSATKGCIS 208 (208)
Q Consensus 149 --~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~--l~~~~~~~~~a~~~~~~~ 208 (208)
.+|.++|++||++.+ +.+++++|+++||++++|+||++|. +.....+.++|++||+|.
T Consensus 152 ~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~~g~s~ 213 (275)
T PRK11565 152 TGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTP 213 (275)
T ss_pred CCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHHhCCCH
Confidence 357899999999998 5689999999999999999999763 334567899999999873
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.5e-43 Score=272.77 Aligned_cols=203 Identities=24% Similarity=0.341 Sum_probs=179.6
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceec
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRY 69 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~ 69 (208)
+++|++.+|+|++.. |. .+..+....+++|++.||++||-|+.||++..|+.+|. +.|+||++...
T Consensus 11 ~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~~ 87 (298)
T COG4989 11 LEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIRL 87 (298)
T ss_pred ccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeecccccc
Confidence 468999999999953 33 35578999999999999999999999999999999998 99999999765
Q ss_pred CCCC----ccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHH
Q 040616 70 EDGK----YSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRA 145 (208)
Q Consensus 70 ~~~~----~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 145 (208)
.... ..++.+.+.|.+++|+||++|+|||+|++++|+||+..+.+|+.+|+..|++.||||++|||||++.+++-+
T Consensus 88 ~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL 167 (298)
T COG4989 88 PSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELL 167 (298)
T ss_pred ccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHH
Confidence 3211 357899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhc--CCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCcccccCC-CC-------CcccchhhcCC
Q 040616 146 HTI--HPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGRGFLSS-GP-------KLIHLSATKGC 206 (208)
Q Consensus 146 ~~~--~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~G~l~~-~~-------~~~~~a~~~~~ 206 (208)
.+. .++.+||+++|+++.. ..++.+++|+.+.|.+++||||++|.+.. +. .++++|+++|.
T Consensus 168 ~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ga 239 (298)
T COG4989 168 QSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGA 239 (298)
T ss_pred HHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHhCc
Confidence 887 4588999999999986 44589999999999999999999986544 22 36889999994
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=249.60 Aligned_cols=196 Identities=25% Similarity=0.273 Sum_probs=173.2
Q ss_pred CcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------EEEEeecceecCCC
Q 040616 2 EVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------VKLTTKFGIRYEDG 72 (208)
Q Consensus 2 ~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK~~~~~~~~ 72 (208)
++|.+|||||++...|+...+.+.+.++|++|+++|||+||||..|..|.||..+|+ |.++||+..+.
T Consensus 12 ~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~--- 88 (391)
T COG1453 12 ELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWP--- 88 (391)
T ss_pred ccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCcc---
Confidence 688999999999888888889999999999999999999999999977799999999 99999998654
Q ss_pred CccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-----HHHHHHHHHHHcCCcceEeeCccc-HHHHHHHh
Q 040616 73 KYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIE-----VTIGELKRLVEEGKIKHIDLSEAS-ASTIRRAH 146 (208)
Q Consensus 73 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvs~~~-~~~l~~~~ 146 (208)
-.+++.+++-++++|++|++||+|+|++|..+. ..++ .+++.+++++++|+||++|+|.|+ .+.+.+++
T Consensus 89 ----~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv 163 (391)
T COG1453 89 ----VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIV 163 (391)
T ss_pred ----ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHH
Confidence 567999999999999999999999999999866 3222 268999999999999999999986 56799999
Q ss_pred hcCCccEEeeccCcCCCCccc--cHHHHHHHhCCcEEEcccCcccccCCCCC--cccchhhcC
Q 040616 147 TIHPITVVRLEWSLRSRDVEE--EIVPTCRELGIGIVAYSLLGRGFLSSGPK--LIHLSATKG 205 (208)
Q Consensus 147 ~~~~~~~~q~~~~~~~~~~~~--~~l~~~~~~gi~v~a~~pl~~G~l~~~~~--~~~~a~~~~ 205 (208)
...++|++|++||.++.+... +.+++|.++|++|+.++|+.+|-|..++. +.++.+++.
T Consensus 164 ~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~ 226 (391)
T COG1453 164 DAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPAS 226 (391)
T ss_pred hcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcC
Confidence 999999999999999987443 89999999999999999999998886433 456666554
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=8.2e-36 Score=232.86 Aligned_cols=192 Identities=24% Similarity=0.329 Sum_probs=168.0
Q ss_pred CCcCcccccccccccCCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------EEEEeecceecCC
Q 040616 1 LEVSGQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------VKLTTKFGIRYED 71 (208)
Q Consensus 1 ~~v~~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK~~~~~~~ 71 (208)
++||+||||+..++..++. .++++....+..|+++|||+|||++.||.+.+|..+|. .+|+||++....+
T Consensus 32 l~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ld 110 (342)
T KOG1576|consen 32 LRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYELD 110 (342)
T ss_pred ceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecccC
Confidence 4799999999999998987 46777777777799999999999999999999999998 9999999987766
Q ss_pred CCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 72 GKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK----IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
....++++.+.+++++++||+||++||+|++++|+.+.. ..+.|++.+|++++++||+|+||++.+..+.+.+..+
T Consensus 111 ~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae 190 (342)
T KOG1576|consen 111 YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAE 190 (342)
T ss_pred ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHh
Confidence 667789999999999999999999999999999997654 3467999999999999999999999999999999998
Q ss_pred cC--CccEEe--eccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 148 IH--PITVVR--LEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 148 ~~--~~~~~q--~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
.. ..+++- .+|++.+.. ....+++.+++|++|+.-++++.|+|+..
T Consensus 191 ~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~ 240 (342)
T KOG1576|consen 191 RGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQ 240 (342)
T ss_pred cCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcC
Confidence 74 366666 566665553 23788889999999999999999999853
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.46 E-value=4.6e-07 Score=70.79 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc--CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 113 IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI--HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
+.+.|+.||+++.+|+|..||+|.|+..+++++++. ..|..+|+++.-.+.-+ .++.++|.+|+|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999988 57899999999888764 499999999999999865
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=92.09 E-value=0.92 Score=35.01 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh-cC-CccEEeeccCcCCCC
Q 040616 87 CEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT-IH-PITVVRLEWSLRSRD 164 (208)
Q Consensus 87 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~-~~~~~q~~~~~~~~~ 164 (208)
+++.|..+.-+.+|.+.+..- -..+....+.|+++.+-|+---|++.||.-+..+..+- .+ -|..-.++|+.++.+
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 344455555566666666432 11233456678888888998889999998887666554 33 367778888888765
Q ss_pred -----ccccHHHHHHHhCCcEEEcccCcccc
Q 040616 165 -----VEEEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 165 -----~~~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
--.++-++|++.|+.+.-..++.++.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 23489999999999999999998765
No 20
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=90.78 E-value=2.7 Score=35.84 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=61.2
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCCcceEeeC-------cccHHHHHHHhhc---C------CccE
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEEGKIKHIDLS-------EASASTIRRAHTI---H------PITV 153 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~---~------~~~~ 153 (208)
.+.||.|+++ .+++++++++.+..++-. |.|-+- |.+.++..++.+. . +..|
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3789998543 468899999988875332 234332 6677776666654 4 5689
Q ss_pred EeeccCcCCCC--------ccccHHHHHHHhCCcEEEcccCcc
Q 040616 154 VRLEWSLRSRD--------VEEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 154 ~q~~~~~~~~~--------~~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
+-++|||.... .-..+.+.++++||.+......|.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999996431 112677788899999999988865
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.77 E-value=5.8 Score=32.88 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCc--hhhhcce-------EEEEeecceecCCCCccCCCChHHHHHHHHHHHH
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHT--NEILLAR-------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLK 92 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~--~e~~~g~-------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 92 (208)
+.++..+.++.+.+.|++.|+.-- |... ..+.+.. +-|.-+... .++.+... .+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g~~~l~vD~n~---------~~~~~~A~-~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAPDARLRVDANQ---------GWTPEEAV-ELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCCCCeEEEeCCC---------CcCHHHHH-HHHHHHH
Confidence 456677788888999999998632 2111 1122221 223333321 23443322 2223344
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHH
Q 040616 93 CLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIV 170 (208)
Q Consensus 93 ~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l 170 (208)
.. ++.++-.|-+. +-++.+.++++...+. +.|=+-++.+.+.++++....+++|+..+..-. ..-..+.
T Consensus 202 ~~-----~l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 202 EL-----GVELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred hc-----CCCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 44 44455555332 2366677788877665 445556888999999998889999998666432 1234789
Q ss_pred HHHHHhCCcEEEcccCccc
Q 040616 171 PTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 171 ~~~~~~gi~v~a~~pl~~G 189 (208)
.+|+++|+.++..+-+.++
T Consensus 273 ~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 273 DLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHcCCCEEEECchhhH
Confidence 9999999999987655443
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.66 E-value=2.8 Score=33.52 Aligned_cols=107 Identities=17% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEeeCcccHHHHHHHhhcCCccEE
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG-KIKHIDLSEASASTIRRAHTIHPITVV 154 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 154 (208)
..++.+...+-+ +.|.++|+++|.+-..-.+......++.++.+.++.+.+ .++...++.-..+.++.+.+.. ++.+
T Consensus 14 ~~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i 91 (265)
T cd03174 14 ATFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEV 91 (265)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEE
Confidence 345555555544 447788999988877654422212345788888899888 5666677765566677776654 5667
Q ss_pred eeccCcCC--------------CCccccHHHHHHHhCCcEEEcc
Q 040616 155 RLEWSLRS--------------RDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 155 q~~~~~~~--------------~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
++.+..-+ ...-...+++++++|+.+...-
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 77665441 1112267888999998877644
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.37 E-value=1 Score=38.65 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC
Q 040616 23 ESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV 96 (208)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 96 (208)
......++++|++.|++++|||.... ....+.+ +.+..-+|..+ ..+--....++++..+ .+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEAKKAGITAVLGCGFDP-------GITNVLAAYAAKELFD--EI 145 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHHHHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--cc
Confidence 34456889999999999999998765 2222222 56666665432 3444444444444433 57
Q ss_pred CcccEEEeecCCCC
Q 040616 97 DCIDLYYQHRIDTK 110 (208)
Q Consensus 97 d~iDl~~lh~~~~~ 110 (208)
+++|+|..+-|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999998765
No 24
>PRK08609 hypothetical protein; Provisional
Probab=89.37 E-value=12 Score=34.00 Aligned_cols=140 Identities=13% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCCeEeCCCCCCC-----Cchhhhc----------ce------EEEEeecceecCCCCccCCCChHHHH
Q 040616 26 MIALIHHAIDSGITVLDTSNVYGP-----HTNEILL----------AR------VKLTTKFGIRYEDGKYSYCGDPAYLR 84 (208)
Q Consensus 26 ~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~~e~~~----------g~------~~i~tK~~~~~~~~~~~~~~~~~~i~ 84 (208)
..++++.|.+.|++.+=.++|... |.+...+ .+ |++..-+... ++...
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----------~~g~~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----------PDGSL 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----------CCcch
Confidence 566999999999999987777521 1111111 11 2332222221 11222
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc---------c--cHHHHHHHhhcCCccE
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE---------A--SASTIRRAHTIHPITV 153 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------~--~~~~l~~~~~~~~~~~ 153 (208)
.-.+..|+. .||+ +.-+|++. ..+.++.++.+.++.+.|.+.-||=-. + +.+.+.+++.... .+
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~ 494 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TA 494 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CE
Confidence 223335554 4666 77888753 335677888899988888888776332 1 1123333322222 46
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEE
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~ 181 (208)
+|++-++........++..|++.|+.++
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 6777666544445689999999998654
No 25
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.81 E-value=1.9 Score=33.70 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=46.6
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeecc
Q 040616 90 SLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 158 (208)
....+|.|++=+++........+.+.+ +.+.+.. .+.++.+||. |-+++.+.++.+..+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 445699999999855433333444433 3333322 2568889995 78999999999999999999864
No 26
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=88.65 E-value=7.7 Score=32.48 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce----------------------------EEEEeecceecCC
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR----------------------------VKLTTKFGIRYED 71 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------------------------~~i~tK~~~~~~~ 71 (208)
..+.+.-.++.++|-+.|+-+|-|--.+. +-..+-. ++++|=.
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~---svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGm------ 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLT---AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGM------ 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHH---HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEccc------
Confidence 44677778899999999999987654443 2222222 4454433
Q ss_pred CCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHH-HHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 72 GKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-KIPIEVT-IGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.+-+.+.++++...++=. .|+.+||+... ..+++++ +.+|..|.+.= ---||+|.|+...+..+.+.
T Consensus 157 ------a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 ------ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred ------ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 346778888876665543 39999998743 2455554 66666666654 45799999987755554443
No 27
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=88.00 E-value=2.1 Score=34.29 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce----------------------------EEEEeecceecCC
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR----------------------------VKLTTKFGIRYED 71 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------------------------~~i~tK~~~~~~~ 71 (208)
..+.++..++.+++-+.|+.||=|...-. +-..+-+ ++|+|=.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------ 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------ 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT------
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC------
Confidence 34778899999999999999997764432 2222211 5555544
Q ss_pred CCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHH-HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-
Q 040616 72 GKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEV-TIGELKRLVEEGKIKHIDLSEASASTIRRAHTI- 148 (208)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~- 148 (208)
.+.+.|.++++...++- .-++.++|+.... .+.++ -++.|..|++.=- -.||.|.|+.....-+++.
T Consensus 123 ------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~Ava 192 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAAVA 192 (241)
T ss_dssp --------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHHHH
Confidence 34677887777764544 3789999997432 23343 4777778876444 6789999886533333332
Q ss_pred CCccEEeeccCc
Q 040616 149 HPITVVRLEWSL 160 (208)
Q Consensus 149 ~~~~~~q~~~~~ 160 (208)
-.-.+++=.|.+
T Consensus 193 lGA~vIEKHfTl 204 (241)
T PF03102_consen 193 LGARVIEKHFTL 204 (241)
T ss_dssp TT-SEEEEEB-S
T ss_pred cCCeEEEEEEEC
Confidence 223444444444
No 28
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=87.40 E-value=0.28 Score=41.45 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=39.9
Q ss_pred cCCcceEeeCcccHHHHHHHhhcC-CccEEeeccCcCCCCccccHHHHHHHhCCc
Q 040616 126 EGKIKHIDLSEASASTIRRAHTIH-PITVVRLEWSLRSRDVEEEIVPTCRELGIG 179 (208)
Q Consensus 126 ~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~ 179 (208)
-|+||++||--++++++.++.+.. .-++.+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 499999999999999999998762 234444455554443345788889988886
No 29
>PRK07945 hypothetical protein; Provisional
Probab=87.37 E-value=16 Score=30.70 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc---------------ccHHHHHHHhhcCCccEEeeccCc
Q 040616 96 VDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE---------------ASASTIRRAHTIHPITVVRLEWSL 160 (208)
Q Consensus 96 ~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------------~~~~~l~~~~~~~~~~~~q~~~~~ 160 (208)
.||+ +..+|+... .+.++..+.|.++.+.+.+.-+|=-. +..+.+.+++.... ..+.++-+.
T Consensus 191 ~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~ 267 (335)
T PRK07945 191 LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRP 267 (335)
T ss_pred CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCC
Confidence 4666 778897643 33466678888888888888888321 12223333332222 233333344
Q ss_pred CCCCccccHHHHHHHhCCcEE
Q 040616 161 RSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 161 ~~~~~~~~~l~~~~~~gi~v~ 181 (208)
....+...+++.|++.|+.++
T Consensus 268 ~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 268 ERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred CCCCChHHHHHHHHHcCCeEE
Confidence 434345678999999998764
No 30
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=85.44 E-value=3.3 Score=32.39 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeeccC
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLEWS 159 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 159 (208)
+..+|.|++=+++........+.+. .+.+.... .+.+..+||. |-+++.+.++++...++++|+.-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~-a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQ-AAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 4568999999875433222333333 33333322 3568899986 678999999999999999999643
No 31
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=83.76 E-value=7.9 Score=30.43 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=61.7
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~ 176 (208)
.++.++-.|-+.. -++.+.+|.+...+. +.+=|-++...+.++++...++++|+..+..-.- .-..+..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5667777664432 356677777776664 4445557788888888888889999887765321 124788999999
Q ss_pred CCcEEEcccCccc
Q 040616 177 GIGIVAYSLLGRG 189 (208)
Q Consensus 177 gi~v~a~~pl~~G 189 (208)
|+.+...+.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998877654
No 32
>PRK08392 hypothetical protein; Provisional
Probab=83.16 E-value=20 Score=27.96 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCCC---chhhhc------ce-----EEEEeecceecCCCCccCCCChHHHHHHHHHH
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGPH---TNEILL------AR-----VKLTTKFGIRYEDGKYSYCGDPAYLRAACEAS 90 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~~e~~~------g~-----~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 90 (208)
...++++.|.+.|++.+=.+++.... .-+..+ .+ +.+..-+... ++. .+..++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~-----------~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANIT-----------PNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeec-----------CCc-chhHHHH
Confidence 36788999999999988666554210 000101 00 3333333221 111 2233344
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc----c----cHHHHHHHhhc---CCccEEeeccC
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE----A----SASTIRRAHTI---HPITVVRLEWS 159 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~---~~~~~~q~~~~ 159 (208)
+++ .||+ +.-+|........++..+.+.++.+.+.+.-+|=-. + ..+.++++++. .. ..+ ++|
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~l--EiN 156 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAF--EIS 156 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEE--EEe
Confidence 553 4666 677884322233566788888888899877776321 1 11233333322 21 122 222
Q ss_pred cCCCCccccHHHHHHHhCCcEE
Q 040616 160 LRSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 160 ~~~~~~~~~~l~~~~~~gi~v~ 181 (208)
-..+.+...+++.|++.|+.++
T Consensus 157 t~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 157 SRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCCCHHHHHHHHHcCCEEE
Confidence 2122335589999999998765
No 33
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=82.85 E-value=27 Score=29.33 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCC------Cchhh-------hcce-EEEEeecceecCCCCccCCCChHHHHHHH
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGP------HTNEI-------LLAR-VKLTTKFGIRYEDGKYSYCGDPAYLRAAC 87 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------g~~e~-------~~g~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 87 (208)
+.++..+.++.+.+.|++.|-.--..+. ....+ .+|. +.|..... ..++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN---------~~~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDAN---------GRWDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECC---------CCCCHHHHH---
Confidence 3566777788888999998764321110 00111 1221 33433332 133444433
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-c
Q 040616 88 EASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-V 165 (208)
Q Consensus 88 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 165 (208)
+.+++|. ..++.++..|-+. +.++.+.++++.-.+. ..|=|-++++.+.++++...++++|+.....-.- .
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 3333442 2355566666432 2466677787775554 4445567899999999988899999987665321 1
Q ss_pred cccHHHHHHHhCCcEEEccc
Q 040616 166 EEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~p 185 (208)
-..+...|+++|+.++..+-
T Consensus 280 ~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 280 AKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHcCCeEeccCC
Confidence 34899999999999887764
No 34
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=82.48 E-value=9.4 Score=27.87 Aligned_cols=63 Identities=6% Similarity=0.169 Sum_probs=47.1
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLYYQHRIDTKIPIEVTIGELKRLVEE 126 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 126 (208)
..+| +.|+-|++. ...++.+++.+.++++... ....|++++..+....++.+....|..+.++
T Consensus 46 ~RlG-~sVSKKvg~---------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVG-ITVSKKFGK---------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEE-EEEeccccc---------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3566 888888874 4668888888888887663 4578999999987767777777777666654
No 35
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=82.10 E-value=28 Score=28.92 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=67.2
Q ss_pred HHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCc-ceEeeCc---ccHHHHHHHhhcCC-ccEEeec
Q 040616 88 EASLKCLDVDCIDLYYQHRIDT-----KIPIEVTIGELKRLVEEGKI-KHIDLSE---ASASTIRRAHTIHP-ITVVRLE 157 (208)
Q Consensus 88 ~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~i-r~iGvs~---~~~~~l~~~~~~~~-~~~~q~~ 157 (208)
++..+++| .|++-+|-.+. +.+..++.+.|+++.+.=++ -.||-|. -+++.++++.+... =.|.-..
T Consensus 157 rk~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 34445666 67888887633 24678899999999888777 5677775 35678888887632 1233333
Q ss_pred cCcCCCCccccHHHHHHHhCCcEEEcccCccc
Q 040616 158 WSLRSRDVEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
.|+-.. -+.+.+++.++|-.|.+|+++.-.
T Consensus 234 anldlD--y~~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 234 ANLDLD--YERIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred cccccC--HHHHHHHHHhcCceEEEeeccChH
Confidence 343332 347999999999999999998653
No 36
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=82.10 E-value=6.3 Score=30.86 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeC-cccHHHHHHHhhcCCccEEeeccCcCCCCcccc
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLS-EASASTIRRAHTIHPITVVRLEWSLRSRDVEEE 168 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 168 (208)
...+|.||+=+++.-......+.+++ .++.+.-. ++.+||. |-+.+.+.++++..+++.+|+.-. ...+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~a----~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQA----REIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHHH----HHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHH
Confidence 45678899888876532333443333 33333333 8899985 678899999999999999998554 1235
Q ss_pred HHHHHHHhC-CcEE
Q 040616 169 IVPTCRELG-IGIV 181 (208)
Q Consensus 169 ~l~~~~~~g-i~v~ 181 (208)
.++..++.. +.++
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 666666654 5444
No 37
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=81.57 E-value=35 Score=29.68 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=62.8
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHc------CCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHH
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEE------GKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVP 171 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~ 171 (208)
+++ ++-.|-+..+.++.++.+.+|++. ..==..+=|-++.+.+.++++..-.+++|+..+-.--- .-..+.+
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~ 342 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIM 342 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH
Confidence 345 778775544434567777777765 33344455667899999999988899999988764321 2348999
Q ss_pred HHHHhCCcEEEcccC
Q 040616 172 TCRELGIGIVAYSLL 186 (208)
Q Consensus 172 ~~~~~gi~v~a~~pl 186 (208)
+|+.+||.+...+..
T Consensus 343 lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 343 YCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHcCCEEEEeCCC
Confidence 999999999987665
No 38
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=81.52 E-value=13 Score=34.10 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeeccC
Q 040616 92 KCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLEWS 159 (208)
Q Consensus 92 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 159 (208)
..+|.|++=+++........+.+...+.+.+....-.++.+||- |-+++.+.++.+...++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 55899999998666443444555523333333333357789984 889999999999999999999754
No 39
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=80.76 E-value=34 Score=29.01 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcC-CCcccEEEeecCCCC-----------CCHHHHHHHHHH-HHHcCC---cceEeeC--cccHHHHH
Q 040616 82 YLRAACEASLKCLD-VDCIDLYYQHRIDTK-----------IPIEVTIGELKR-LVEEGK---IKHIDLS--EASASTIR 143 (208)
Q Consensus 82 ~i~~~~~~sL~~L~-~d~iDl~~lh~~~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~l~ 143 (208)
.+++-.+..+++++ .+....+-||.++++ .+++++.+++.+ +.+.|+ ++++=+. |.+.+.++
T Consensus 195 ~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~ 274 (345)
T PRK14457 195 TIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAE 274 (345)
T ss_pred hHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHH
Confidence 34444444444443 344578999998653 346777877766 445552 4666665 45567666
Q ss_pred HHhhc---CCccEEeeccCcCCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 144 RAHTI---HPITVVRLEWSLRSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 144 ~~~~~---~~~~~~q~~~~~~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
++.+. .+..++-++||+.... +.. .+.+.++++|+.+......+.
T Consensus 275 ~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 275 ELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 66543 4567888999986431 122 456677888999998877765
No 40
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=80.16 E-value=15 Score=31.91 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=67.6
Q ss_pred Cccccccccccc----CCCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCC
Q 040616 4 SGQGLRCMGMFA----FYGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGD 79 (208)
Q Consensus 4 ~~lg~G~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~ 79 (208)
-++.+|..+|-. .-+...+.+++.+.+..+.+.|+.-+-.-=.|| -+..+
T Consensus 149 NRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg--------------------------lP~QT 202 (416)
T COG0635 149 NRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG--------------------------LPGQT 202 (416)
T ss_pred CEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC--------------------------CCCCC
Confidence 355666665532 123344566777777777777777654434565 13467
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCC----------C-CC-HH---HHHHHH-HHHHHcCCcceEeeCcccH
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDT----------K-IP-IE---VTIGEL-KRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~----------~-~~-~~---~~~~~l-~~l~~~G~ir~iGvs~~~~ 139 (208)
.+.+.+.+++.++ |+.|+|.+|.+--... . .+ .+ +.++.. +.|.+.|. +.+|+|||..
T Consensus 203 ~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 203 LESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 7788888877765 6799999998754211 0 11 12 334444 45556777 9999999986
No 41
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.15 E-value=16 Score=29.53 Aligned_cols=102 Identities=20% Similarity=0.154 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC-CCHHH----HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQ-HRIDTK-IPIEV----TIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPI 151 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~~-~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 151 (208)
.+.+.+.+..++.+ +-|-|.||+=.- -+|+.. .+.++ +...++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~-plSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV-LISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cEEEeCCCHHHHHHHHHhCCC
Confidence 34444444444433 457899998632 234332 22233 33345566655333 377889999999999998643
Q ss_pred cEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 152 TVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 152 ~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
-+|-+ +-... ...+++.++++|..++.+..
T Consensus 99 iINdi--sg~~~--~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 IINDV--SGGSD--DPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEEeC--CCCCC--ChHHHHHHHHcCCCEEEECC
Confidence 33333 22222 25789999999999999543
No 42
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=78.78 E-value=32 Score=27.61 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce--------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHH
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR--------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKC 93 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~--------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 93 (208)
+.++..+.++.+.+.|++.|-.--.-......+.+-. +.|.-... ..++.+...+-+ +.|+.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~~l~vDan---------~~~~~~~a~~~~-~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDAN---------RGWTPKQAIRAL-RALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEEeCC---------CCcCHHHHHHHH-HHHHh
Confidence 3455677778888999998864321110001111111 22322221 134444433333 23344
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHH
Q 040616 94 LDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVP 171 (208)
Q Consensus 94 L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~ 171 (208)
+ ++.++..|-+. +-++.+.++++.-.+. +.|=+-++...+.++++...++++|+..+..-. ..-..+..
T Consensus 155 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~ 225 (265)
T cd03315 155 L-----GLDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLA 225 (265)
T ss_pred c-----CCCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHH
Confidence 3 44555666432 2356677777765554 445566788999999988889999998776543 12347899
Q ss_pred HHHHhCCcEEEcccCccc
Q 040616 172 TCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 172 ~~~~~gi~v~a~~pl~~G 189 (208)
.|+++|+.+...+.+.++
T Consensus 226 ~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 226 VAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHcCCcEEecCccchH
Confidence 999999999987766554
No 43
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=78.56 E-value=20 Score=30.63 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec-CCC-----------CCCHHH----H-HHHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDT-----------KIPIEV----T-IGELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~-----------~~~~~~----~-~~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..++ ++.++|.+|.+.- |.. ..+-++ . ..+.+.|.+.|. .++++|||..
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 4677888888877664 7889999988763 210 011111 1 234566677776 5578888863
No 44
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=77.86 E-value=13 Score=31.55 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=61.0
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~ 176 (208)
.++.++-.|-+. +-++.+.+|++...+. +.|=|-++...+..+++...++++|+.....-.- .-..+.+.|+++
T Consensus 189 ~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~ 264 (361)
T cd03322 189 YRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLY 264 (361)
T ss_pred cCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 466666665332 3367788888887665 6777778999999999988899999987754321 134899999999
Q ss_pred CCcEEEccc
Q 040616 177 GIGIVAYSL 185 (208)
Q Consensus 177 gi~v~a~~p 185 (208)
|+.+..++.
T Consensus 265 gi~~~~h~~ 273 (361)
T cd03322 265 GVRTGWHGP 273 (361)
T ss_pred CCeeeccCC
Confidence 999987654
No 45
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=77.76 E-value=19 Score=31.03 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec-CCC-----------CC-CHHH---HH-HHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDT-----------KI-PIEV---TI-GELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~-----------~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..+ +|+.++|.++.+.- |.. .. +.++ .+ .+.+.|.+.|- .++++|||..
T Consensus 178 gqt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 255 (400)
T PRK07379 178 HQTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAK 255 (400)
T ss_pred CCCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheEC
Confidence 456777777777655 47889998887762 211 00 1112 22 35567778887 4689999874
No 46
>PRK13796 GTPase YqeH; Provisional
Probab=77.01 E-value=46 Score=28.38 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHCC---CCeEeCCCCCCCC--chhhhcce---EEEEeecceecCCCCccCCCChHHHHHHHHHHH
Q 040616 20 PKPESCMIALIHHAIDSG---ITVLDTSNVYGPH--TNEILLAR---VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASL 91 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g--~~e~~~g~---~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 91 (208)
..+.++..++++..-+.- +-.+|..+.-+.- .-++..+. ++|.+|.-... .....+.+.+.++...
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~------~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLP------KSVKKNKVKNWLRQEA 126 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCC------CccCHHHHHHHHHHHH
Confidence 345666777777766554 3456765543311 12233333 88999987532 1334566777777777
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHH
Q 040616 92 KCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRA 145 (208)
Q Consensus 92 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 145 (208)
+.++....|++++-... ...++++++.+.++.+.+.+--+|.+|..-..+...
T Consensus 127 k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 127 KELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 77776555777765433 356788899988888888899999999876654433
No 47
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=76.63 E-value=43 Score=27.87 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------------EEEEeecceecCCCCccCCCChHHH
Q 040616 21 KPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------------VKLTTKFGIRYEDGKYSYCGDPAYL 83 (208)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------------~~i~tK~~~~~~~~~~~~~~~~~~i 83 (208)
.+.++..++++.+.+.|++.+.-.. | |..+-. +.|+|-.. .+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--G----EPll~~~l~~li~~i~~~~~~~~i~itTNG~---------------ll 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--G----EPLLRKDLEDIIAALAALPGIRDLALTTNGY---------------LL 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--C----CCcCccCHHHHHHHHHhcCCCceEEEEcCch---------------hH
Confidence 4678889999999999998776432 2 333322 22222211 12
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----cceEeeCcccHHHHHHHhhc---
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDT--------KIPIEVTIGELKRLVEEGK----IKHIDLSEASASTIRRAHTI--- 148 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~--- 148 (208)
.+.+ ..|...+++.+- +-+|..++ ...+++++++++.+++.|. +..+.+-..+.+++.++++.
T Consensus 108 ~~~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 ARRA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HHHH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 2222 334555655443 34454432 2357889999999999886 23444445566666665554
Q ss_pred CCccEEeeccCcCCCC---------ccccHHHHHHHhCCcEEE
Q 040616 149 HPITVVRLEWSLRSRD---------VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 149 ~~~~~~q~~~~~~~~~---------~~~~~l~~~~~~gi~v~a 182 (208)
.++.+.-++|.+.... ...++++..+++|+.+..
T Consensus 186 ~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 186 RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 4555666666664432 123677888887665443
No 48
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=75.97 E-value=29 Score=29.54 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=57.3
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEeeC--cccHHHHHHHhhc---CCccEEeeccCcCC
Q 040616 103 YQHRIDTK-----------IPIEVTIGELKRLV-EEGK---IKHIDLS--EASASTIRRAHTI---HPITVVRLEWSLRS 162 (208)
Q Consensus 103 ~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~~~ 162 (208)
-||.++++ .+++++++++.++. +.|+ |+++=+. |.+.++++++.+. .+..++-++||+..
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988653 34577888887554 3343 4666665 4566776666554 56788999999875
Q ss_pred CC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 163 RD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 163 ~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
.. +.. .+.+..+++|+.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 31 122 356667788999999888765
No 49
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=75.59 E-value=26 Score=28.24 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHc-CCcceEeeC---cccHHHHHHHhh
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-----KIPIEVTIGELKRLVEE-GKIKHIDLS---EASASTIRRAHT 147 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~ 147 (208)
.++.+... ++-+.|.++|+++|++-+...... ..+....|+.++.+++. ...+...++ ..+.+.++.+.+
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 45555544 455569999999999985532110 01112245566666443 345655554 334566777766
Q ss_pred cCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 148 IHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 148 ~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
. .++.+.+.++.-+...-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4566665443322222347899999999876553
No 50
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=75.56 E-value=12 Score=31.88 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCcc
Q 040616 116 TIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
-++.+.+|++...+. +.|=|-++..++.++++....+++|+.....-.- .-..+...|+.+|+.++..+.+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 367777788776664 6677778888999998888889999877754321 123789999999999987654433
No 51
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=75.34 E-value=36 Score=28.61 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCccc
Q 040616 117 IGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 117 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
++.|.++++.-.+ -+.|=|-++...+.++++....+++|+..+++-. -.+.++.|+++|+.++..|.+.++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 5566666655333 3445555778888888888889999998887765 457888999999999988777654
No 52
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=75.04 E-value=26 Score=28.85 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeec
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLE 157 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 157 (208)
++.+. +..+-+.|.++|+++|++-.+..|..-....+.++.+..+.+...++...++ .+...++.+++.. ++.+.+.
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 34443 4456667999999999997555553222223345666666554445555555 4778888888763 2334333
Q ss_pred cCcC--------CCC------ccccHHHHHHHhCCcEEE
Q 040616 158 WSLR--------SRD------VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 158 ~~~~--------~~~------~~~~~l~~~~~~gi~v~a 182 (208)
++.- ... .-.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2221 011 123689999999998863
No 53
>PRK05660 HemN family oxidoreductase; Provisional
Probab=74.96 E-value=27 Score=29.86 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec-CCC-------CC-CHHHHHH----HHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDT-------KI-PIEVTIG----ELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~-------~~-~~~~~~~----~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..++ ++.++|.+|.+-- |+. .. +.++.|+ +.+.|.+.|. ..+.+|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 4567778887777655 8899998887752 211 01 1122232 3345666775 5578998864
No 54
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=73.91 E-value=25 Score=30.33 Aligned_cols=84 Identities=6% Similarity=-0.047 Sum_probs=59.9
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~ 176 (208)
.++.++-.|-+. +.++.+.+|++.-.+. +.|=|-++...+.++++..-++++|+.....-- ..-..+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 455555554322 2367777888876664 666777899999999998889999987775432 1134789999999
Q ss_pred CCcEEEcccC
Q 040616 177 GIGIVAYSLL 186 (208)
Q Consensus 177 gi~v~a~~pl 186 (208)
|+.+..++..
T Consensus 308 gi~~~~h~~~ 317 (404)
T PRK15072 308 QVRTGSHGPT 317 (404)
T ss_pred CCceeeccCc
Confidence 9999876543
No 55
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=73.80 E-value=24 Score=29.92 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHhCCcEEEcccC
Q 040616 116 TIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
.++.+.+|++...+. +.|=+-++...+.++++...++++|+.....-. ..-..+..+|+++|+.++..+-+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 467777888776664 566666788899999988888899887665422 11347899999999999865433
No 56
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=73.35 E-value=13 Score=32.99 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-.--.+.++++.+.
T Consensus 193 ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 193 RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 34478889999976 346899999999999999999999988778888888886
No 57
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=73.19 E-value=22 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR 106 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~ 106 (208)
..+.+.+++.++..++ ++.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 4677888888777654 8999999998763
No 58
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=73.10 E-value=25 Score=30.38 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.+.+++.+.+.+++-.+ |=+|++-+|.- -+.+.++.+++.|++ .|+-+-...-+...+....
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~----- 196 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHH----- 196 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcC-----
Confidence 35677777777776665 45899999973 256778889998854 5554444443333332221
Q ss_pred eccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 156 LEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
.=||+... -+.+++.|+++++.+---.-|--|.+.+.
T Consensus 197 -~ENPlye~-fD~lLeI~~~yDVtlSLGDglRPG~i~DA 233 (423)
T TIGR00190 197 -KENPLYKN-FDYILEIAKEYDVTLSLGDGLRPGCIADA 233 (423)
T ss_pred -CcCchHHH-HHHHHHHHHHhCeeeeccCCcCCCccccC
Confidence 22444442 24688888888887766555555655543
No 59
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=72.95 E-value=16 Score=30.45 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=63.9
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~ 176 (208)
.++.++-.|-+ .+.++.+.++++.-.+. +.|=|.++...+..+++...++++|+..+..-.- .-..+...|+.+
T Consensus 198 ~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~ 273 (324)
T TIGR01928 198 YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREH 273 (324)
T ss_pred CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHc
Confidence 45666665532 34467788888876663 6677788999999999988899999877754321 134889999999
Q ss_pred CCcEEEcccCccc
Q 040616 177 GIGIVAYSLLGRG 189 (208)
Q Consensus 177 gi~v~a~~pl~~G 189 (208)
|+.++..+.+.+|
T Consensus 274 gi~~~~~~~~es~ 286 (324)
T TIGR01928 274 GAKVWIGGMLETG 286 (324)
T ss_pred CCeEEEcceEccc
Confidence 9999987666555
No 60
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=72.51 E-value=26 Score=30.07 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=60.9
Q ss_pred cEEEeecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEeeC--cccHHHHHHHhh---cC---CccEEee
Q 040616 100 DLYYQHRIDTK-----------IPIEVTIGELKRLV-EEGK---IKHIDLS--EASASTIRRAHT---IH---PITVVRL 156 (208)
Q Consensus 100 Dl~~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~---~~---~~~~~q~ 156 (208)
=.+-||.++++ .+++++++++.++. +.|+ |+++=+. |.+.+++.++.+ .. +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 45788988653 45788999987777 4454 4555555 455555555544 34 5688999
Q ss_pred ccCcCCCC-----c---cccHHHHHHHhCCcEEEcccCcc
Q 040616 157 EWSLRSRD-----V---EEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 157 ~~~~~~~~-----~---~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
+||+.... . -..+.+..+++||.+......+.
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99996431 1 12578888999999999888765
No 61
>PRK05414 urocanate hydratase; Provisional
Probab=72.46 E-value=14 Score=32.87 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-.--.+.++++++.
T Consensus 202 ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 202 RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 34578889999987 246899999999999999999999988778888888886
No 62
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.04 E-value=30 Score=29.23 Aligned_cols=82 Identities=7% Similarity=0.046 Sum_probs=58.1
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~ 176 (208)
.++.++-.|-+. +-++.+.+|+++.-+. +.|=|.++..++..+++..-++++|+.....-- ..-..+.+.|+++
T Consensus 202 ~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~ 277 (352)
T cd03325 202 YRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAY 277 (352)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 345555554322 2377788888876554 556677889999999887778999998665421 1234899999999
Q ss_pred CCcEEEcc
Q 040616 177 GIGIVAYS 184 (208)
Q Consensus 177 gi~v~a~~ 184 (208)
|+.++..+
T Consensus 278 gi~~~~h~ 285 (352)
T cd03325 278 DVALAPHC 285 (352)
T ss_pred CCcEeccC
Confidence 99998765
No 63
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=71.75 E-value=15 Score=32.43 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=44.2
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeeccC
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLEWS 159 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 159 (208)
...+|.|++=+++........+.+.+-+....+ . ++.+||- |-+++.+.++.+..+++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 345788988887543322334444333332222 2 8899986 788999999999999999999664
No 64
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=71.49 E-value=60 Score=27.61 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred HHHHcCCCcccEEEeecCCCC-----------CCHHHHHHHHHHHHHcC-C---cceEeeC--cccHHHHHHHhhc---C
Q 040616 90 SLKCLDVDCIDLYYQHRIDTK-----------IPIEVTIGELKRLVEEG-K---IKHIDLS--EASASTIRRAHTI---H 149 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~G-~---ir~iGvs--~~~~~~l~~~~~~---~ 149 (208)
.|...+...+++ -||.++++ .+++++++++.++..+. + |+++=+. |.+.++++++.+. .
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344555544444 57777542 35778888887654432 2 3444443 5555666665543 5
Q ss_pred CccEEeeccCcCCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 150 PITVVRLEWSLRSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 150 ~~~~~q~~~~~~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
+..++-++||+.... +.. .+.+..+++|+.+......+.
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 567888999986432 111 466778888999998887765
No 65
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=70.79 E-value=34 Score=29.52 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=60.1
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHhC
Q 040616 100 DLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCRELG 177 (208)
Q Consensus 100 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~g 177 (208)
++.++-.|-+ -++.+.+|++...+- +.|-|-++..++.++++..-++++|......--- .-..+.+.|+++|
T Consensus 239 ~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~g 312 (395)
T cd03323 239 VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWG 312 (395)
T ss_pred CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcC
Confidence 5666666543 467778888876664 6666677888999999888899999887654321 1348999999999
Q ss_pred CcEEEcccC
Q 040616 178 IGIVAYSLL 186 (208)
Q Consensus 178 i~v~a~~pl 186 (208)
+.+..++..
T Consensus 313 i~~~~h~~~ 321 (395)
T cd03323 313 LGWGMHSNN 321 (395)
T ss_pred CeEEEecCc
Confidence 999987765
No 66
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.72 E-value=65 Score=27.32 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEEeecceecC-----CC--CccCCCChHHHHHHHHHHHHHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHc-CC-
Q 040616 59 VKLTTKFGIRYE-----DG--KYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDTKIPIEVTIGELKRLVEE-GK- 128 (208)
Q Consensus 59 ~~i~tK~~~~~~-----~~--~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~-G~- 128 (208)
++|+|-++.... .+ ....+.+++.|..++....+.++. .++-+.+-. -+|....+.+.+++..+.+. |.
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~ 181 (345)
T PRK14457 103 VCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIG 181 (345)
T ss_pred EEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcccCCc
Confidence 677766665331 11 233468899999999988877753 355444443 45555577888999888875 43
Q ss_pred cceEeeCcc-cHHHHHHHhhc
Q 040616 129 IKHIDLSEA-SASTIRRAHTI 148 (208)
Q Consensus 129 ir~iGvs~~-~~~~l~~~~~~ 148 (208)
.|.|-+|+. -...++++.+.
T Consensus 182 ~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 182 QRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred cCceEEECCCchhhHHHHHhh
Confidence 256666653 23456666543
No 67
>PLN02363 phosphoribosylanthranilate isomerase
Probab=70.64 E-value=21 Score=28.86 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeec
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLE 157 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 157 (208)
+++.++.+ .++|.|++=+++........+.+. .+.+.+......++.+||. |-+++.+.++.+..+++++|+.
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~-a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLSV-AKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHH-HHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555544 358999999975443223333333 3333333333246779984 8899999999999999999996
Q ss_pred c
Q 040616 158 W 158 (208)
Q Consensus 158 ~ 158 (208)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.63 E-value=50 Score=26.79 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC------CCHHHHHHHHHHHHHcCCcceEeeCcc---cHHHHHHHh
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK------IPIEVTIGELKRLVEEGKIKHIDLSEA---SASTIRRAH 146 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvs~~---~~~~l~~~~ 146 (208)
..++.+... .+-+.|.++|+++|++-+....... ....+.++.+..+.+ +..+-.+++.. +.+.+..+.
T Consensus 15 ~~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 456665554 4556699999999999876543211 012456666665553 24555555543 345566654
Q ss_pred hcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 147 TIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 147 ~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
+. .++.+.+.+..-.-..-.+.+++++++|+.+...
T Consensus 93 ~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 GS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred cC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 43 3455555443322222347899999999876643
No 69
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=70.00 E-value=67 Score=27.13 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec-CCCC--------CCHHHHHH-HHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDTK--------IPIEVTIG-ELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~--------~~~~~~~~-~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..+ +++.+++.++.+.- |... .+.++.++ +.+.|.+.|- ..+++|||..
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 456777777776654 58889888887763 2110 11223333 4566667785 5788998874
No 70
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.86 E-value=39 Score=28.92 Aligned_cols=85 Identities=16% Similarity=0.032 Sum_probs=58.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHc------CCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHH
Q 040616 101 LYYQHRIDTKIPIEVTIGELKRLVEE------GKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTC 173 (208)
Q Consensus 101 l~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~ 173 (208)
++++-.|-+..+.++-++.+.++.+. +.==..|=|.++.+.+.++++..-.+++|+..+-.-.- .-..+.++|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34666664433322446677777766 33345555678899999999888889999988864321 134789999
Q ss_pred HHhCCcEEEccc
Q 040616 174 RELGIGIVAYSL 185 (208)
Q Consensus 174 ~~~gi~v~a~~p 185 (208)
+.+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 71
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=69.75 E-value=33 Score=29.79 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.+.+++.+.+.+++-.+ +=+|++-+|.- -+.+.++.+++.|+ -.|+-+-...-+...+....
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~----- 199 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN----- 199 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC-----
Confidence 36777888777777665 45899999973 24677788888885 45555444444333332221
Q ss_pred eccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCC
Q 040616 156 LEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPK 196 (208)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~ 196 (208)
.=||+... -+.+++.|+++++.+---.-|--|.+.+...
T Consensus 200 -~ENPlye~-fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D 238 (431)
T PRK13352 200 -KENPLYEH-FDYLLEILKEYDVTLSLGDGLRPGCIADATD 238 (431)
T ss_pred -CcCchHHH-HHHHHHHHHHhCeeeeccCCcCCCccccCCc
Confidence 23455443 3479999999999887666666666665443
No 72
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=69.74 E-value=10 Score=29.29 Aligned_cols=149 Identities=8% Similarity=-0.016 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCC----
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVD---- 97 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d---- 97 (208)
+++.+.++++.+++.|++..|.-...= -..-..+|+.+-..++.... .-...+.+++.++.....+..+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~iG~~w~~gei~va~------~~~a~~~~~~~l~~l~~~~~~~~~~~ 82 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGL-MAGMGVVGKLFEDGELFLPH------VMMSADAMLAGIKVLTPEMEKAVETE 82 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHcCCCccHHH------HHHHHHHHHHHHHHHHHHhhccccCC
Confidence 678899999999999988666421110 01223344322222221100 0122344555555555555421
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCc-cccHHHHHHH
Q 040616 98 CIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDV-EEEIVPTCRE 175 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~l~~~~~ 175 (208)
.---+++-.+..+..--...=...-++..|. +.++|. +-+.+.+.+.+...+|+++.+.++...... -.++++.+++
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~ 161 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKE 161 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHH
Confidence 1123444444333221222222234555665 566774 448888999988899999999887665532 2378899999
Q ss_pred hCC
Q 040616 176 LGI 178 (208)
Q Consensus 176 ~gi 178 (208)
.+.
T Consensus 162 ~~~ 164 (197)
T TIGR02370 162 EGY 164 (197)
T ss_pred cCC
Confidence 864
No 73
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=69.39 E-value=45 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh 105 (208)
..+.+.+++.++..+ +++.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 567777877777554 5889999888776
No 74
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=68.88 E-value=60 Score=26.20 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CCHH-H---HHHHHHHHHHc-CCcceEeeCcccHHHHHHHhhcCC
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYY-QHRIDTK-IPIE-V---TIGELKRLVEE-GKIKHIDLSEASASTIRRAHTIHP 150 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 150 (208)
.+++.+.+..++.+ .-|.++||+=. --+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 45666666555544 55889999932 1123322 1223 2 44555556555 43 47888999999999999865
Q ss_pred ccEEeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 151 ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 151 ~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
.-++-+..-. .+++++.++++|..++.+.
T Consensus 97 ~iINsis~~~-----~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDVSGGQ-----DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEECCCCC-----CchhHHHHHHcCCcEEEEe
Confidence 4444443321 3478999999999999854
No 75
>TIGR00035 asp_race aspartate racemase.
Probab=67.72 E-value=58 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCcceEeeCcccHHH-HH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK------------IPIEVTIGELKRLVEEGKIKHIDLSEASAST-IR 143 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-l~ 143 (208)
..+.+..++-++.+-.+.+.++++.+++++|+.. .....+.+.++.|.+.| +.+|-++..+... ++
T Consensus 13 ~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 13 LATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHH
Confidence 3445566777777777888999999999998431 12234566666776655 7889887655544 44
Q ss_pred HHhh
Q 040616 144 RAHT 147 (208)
Q Consensus 144 ~~~~ 147 (208)
++.+
T Consensus 92 ~l~~ 95 (229)
T TIGR00035 92 DIQK 95 (229)
T ss_pred HHHH
Confidence 4433
No 76
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=67.67 E-value=55 Score=27.81 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=59.7
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCCcceEeeC-------cccHHHHHHHhhc---CCccEEeeccC
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEEGKIKHIDLS-------EASASTIRRAHTI---HPITVVRLEWS 159 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~---~~~~~~q~~~~ 159 (208)
.+.||.|+.. .++++.+++.....+... ++|-+= |.+.++.+++.+. .+..++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 4778988543 457788888888776555 544432 5566666665554 66789999999
Q ss_pred cCCCC-----c---cccHHHHHHHhCCcEEEcccCcc
Q 040616 160 LRSRD-----V---EEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 160 ~~~~~-----~---~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
|.... . -..+.+..+++||.+....+-+.
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 98654 1 12566777788899998777654
No 77
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=67.50 E-value=45 Score=27.77 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=61.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhC
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELG 177 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~g 177 (208)
.++.++-.|-+.. .++.+.+|++.-.+ -+.|=|-++...+..+++....+++|+..+..-. -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 5677777664322 35666677665443 4666677888899999888788899888776654 346789999999
Q ss_pred CcEEEcccCccc
Q 040616 178 IGIVAYSLLGRG 189 (208)
Q Consensus 178 i~v~a~~pl~~G 189 (208)
|.++..+.+.++
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987766554
No 78
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=66.41 E-value=34 Score=30.06 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEe-ecCCC----------CC-CHHHH----HHHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQ-HRIDT----------KI-PIEVT----IGELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~l-h~~~~----------~~-~~~~~----~~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+.+.++..+ +++.+++.++.+ |.|.. .. +.++. ..+.+.|.+.|. ..+++++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 467788888777766 589999998866 33321 01 12222 235577778886 5589999874
No 79
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=66.33 E-value=51 Score=28.03 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee-cCCC---------C--CC-HH---HH-HHHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH-RIDT---------K--IP-IE---VT-IGELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~---------~--~~-~~---~~-~~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++.. .+++.+++.++.+. .|.. . .+ .+ +. -.+++.|.+.|. ..++++||..
T Consensus 163 gqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 163 GQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred CCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 45677777777664 56888888887554 2210 0 01 11 12 236677777886 5689999863
No 80
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=66.27 E-value=60 Score=27.50 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=57.9
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHc-C-C--cceEeeC--cccHHHHHHHhh---cCCccEEeeccCc
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEE-G-K--IKHIDLS--EASASTIRRAHT---IHPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G-~--ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~ 160 (208)
.+.||.|+.+ .+++++++++.++.++ | + ++++=+. |.+.++++++.+ ..+..++-++||+
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4778988543 3578899999877744 2 2 2355454 455555555544 3557889999998
Q ss_pred CCCC---cc----ccHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSRD---VE----EEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~~---~~----~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
.... +. ..+.+..+++||.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4321 11 1566778888999999887765
No 81
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.01 E-value=26 Score=27.74 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcc
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCI 99 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~i 99 (208)
+.+.++..++++.|.+.|++-+=..++|-+|. +..+.+.+++.+++.-+.+...-+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~------------------------y~n~~~~v~~~~~~ln~~~~~~ai 71 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGR------------------------YENPIEKVKEKANQLNEILKKEAI 71 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCc------------------------cCChHHHHHHHHHHHHHHHHhhcC
Confidence 44778899999999999999776556654222 234566777777777777777777
Q ss_pred cEEEe
Q 040616 100 DLYYQ 104 (208)
Q Consensus 100 Dl~~l 104 (208)
|+-++
T Consensus 72 dl~v~ 76 (254)
T COG4464 72 DLKVL 76 (254)
T ss_pred Cceec
Confidence 77665
No 82
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=66.00 E-value=78 Score=26.89 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=59.3
Q ss_pred EEEeecCCC-----------CCCHHHHHHHHHHHHHcC--Cc--ceEeeC--cccHHHHHHHhhc---CCccEEeeccCc
Q 040616 101 LYYQHRIDT-----------KIPIEVTIGELKRLVEEG--KI--KHIDLS--EASASTIRRAHTI---HPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~-----------~~~~~~~~~~l~~l~~~G--~i--r~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~ 160 (208)
.+-||.|++ ..+++++.+++.++.++. +| -++=+. |.+.+++.++.+. .+..++-++|||
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 588998754 246788999998876433 22 233333 6677766666554 567899999997
Q ss_pred CCC-----Cccc---cHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSR-----DVEE---EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~-----~~~~---~~l~~~~~~gi~v~a~~pl~~ 188 (208)
... ...+ .+.+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 432 2222 566778899999999888765
No 83
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=65.86 E-value=62 Score=27.52 Aligned_cols=88 Identities=13% Similarity=0.176 Sum_probs=57.0
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEeeC--cccHHHHHHHhh---cCCccEEeeccCc
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVE-EGK---IKHIDLS--EASASTIRRAHT---IHPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~ 160 (208)
.+-||.++++ .+++++++++.++.+ .|+ |+++=+. |.+.+++.++.+ ..++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3779988642 246888888877654 332 3444444 344566665544 3567888899998
Q ss_pred CCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
.... +.. .+.+..+++|+.++.....+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 111 356677788999999888765
No 84
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=65.77 E-value=10 Score=29.30 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=41.7
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhcCCccEEeeccCc
Q 040616 90 SLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTIHPITVVRLEWSL 160 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~ 160 (208)
.+..++.||+=+.+. |.... .-..+.+.++.+.-.-+.+||. |-+.+.+.++.+..+++++|+.-+.
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R--~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPR--YVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTT--B--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCC--ccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 456789898888643 33111 1123444455554444488984 6688889999999999999986554
No 85
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.53 E-value=43 Score=28.15 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=58.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~ 176 (208)
.++.++-.|-+. +-++.+.+|++...+. +.|=+.++...+.++++...++++|...+..-- ..-..+.+.|+++
T Consensus 197 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~ 272 (341)
T cd03327 197 YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAY 272 (341)
T ss_pred cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 455555554332 2366777788776665 666677889999999998889999987775432 1234899999999
Q ss_pred CCcEEEcc
Q 040616 177 GIGIVAYS 184 (208)
Q Consensus 177 gi~v~a~~ 184 (208)
|+.+..++
T Consensus 273 g~~~~~h~ 280 (341)
T cd03327 273 GVPVVPHA 280 (341)
T ss_pred CCeecccc
Confidence 99987663
No 86
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=65.31 E-value=51 Score=28.74 Aligned_cols=61 Identities=11% Similarity=-0.060 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC------C-CHH---HHH-HHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK------I-PIE---VTI-GELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------~-~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..+ +++.+++.++.+.-.... . ..+ +.+ .+.+.|.+.|. +.++++||..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 567888888888776 588999999887532111 0 111 223 35566777775 5699999874
No 87
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=65.01 E-value=62 Score=26.78 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=57.6
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~ 176 (208)
.++.++-.|-+. . +.+..+.+.-.+ -+.|=|-++...+.++++....+++|+.....-.- .-..+.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 456666655321 1 455566555333 35555667888888888887788888877764321 234899999999
Q ss_pred CCcEEEcccCccc
Q 040616 177 GIGIVAYSLLGRG 189 (208)
Q Consensus 177 gi~v~a~~pl~~G 189 (208)
|+.++..+.+.+|
T Consensus 257 gi~~~~~~~~es~ 269 (307)
T TIGR01927 257 GLQAVFSSVFESS 269 (307)
T ss_pred CCCEEEECccchH
Confidence 9999988777665
No 88
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=65.00 E-value=81 Score=26.28 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHCCCCeEe---CCCC-----CCCCch----hhhcce------------EEEEeecceecCCCCccCC
Q 040616 22 PESCMIALIHHAIDSGITVLD---TSNV-----YGPHTN----EILLAR------------VKLTTKFGIRYEDGKYSYC 77 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~D---tA~~-----Yg~g~~----e~~~g~------------~~i~tK~~~~~~~~~~~~~ 77 (208)
+.++..+....+.+.|+..|| -++. +|.|.+ -+.+.+ +-|+.|+...+ +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------~ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------D 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-------C
Confidence 456677777788889999998 2332 443311 111111 45777765422 1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHH---HHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccE
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEV---TIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITV 153 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~---~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~ 153 (208)
+.+.. ..+-+.++..| +|.+.+|.-.....+.. -|+...++++.-.|-=||... ++++++.++++....+.
T Consensus 146 -~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 -SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred -CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 11222 34555567776 67778886433222211 378888888877788888776 58889999888766777
Q ss_pred Eee
Q 040616 154 VRL 156 (208)
Q Consensus 154 ~q~ 156 (208)
+|+
T Consensus 221 Vmi 223 (312)
T PRK10550 221 VMI 223 (312)
T ss_pred EEE
Confidence 776
No 89
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=64.93 E-value=10 Score=26.00 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=40.6
Q ss_pred CcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCccc
Q 040616 135 SEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 135 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
|.++...+.++++...++++|+.....--- .-..+.++|+++|+.+...+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 557888899999988889999876654221 134799999999999999986 554
No 90
>PRK14017 galactonate dehydratase; Provisional
Probab=64.76 E-value=62 Score=27.63 Aligned_cols=83 Identities=7% Similarity=0.023 Sum_probs=59.9
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~ 176 (208)
+++.++-.|-+.. .++.+.+|++...+. +.|=|-++...+..+++..-++++|+..+..-- ..-..+.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 4555555553222 256778888877664 666677899999999998888999988775532 1234899999999
Q ss_pred CCcEEEccc
Q 040616 177 GIGIVAYSL 185 (208)
Q Consensus 177 gi~v~a~~p 185 (208)
||.+...+.
T Consensus 279 gi~~~~h~~ 287 (382)
T PRK14017 279 DVALAPHCP 287 (382)
T ss_pred CCeEeecCC
Confidence 999997764
No 91
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=64.00 E-value=89 Score=26.36 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceE-EEEeecceecC-----------CCCc----cCCCChHHH
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARV-KLTTKFGIRYE-----------DGKY----SYCGDPAYL 83 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~-~i~tK~~~~~~-----------~~~~----~~~~~~~~i 83 (208)
..+.+....+.+.+-+.|+.+|=|...-. +-.++-++ +=.-|++...- .+.+ ....+.+.+
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei 148 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEI 148 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHH
Confidence 34677888899999999999986653322 22222221 11111111110 0000 012367888
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCC-CCCHHH-HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEEeeccCc
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDT-KIPIEV-TIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVVRLEWSL 160 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~ 160 (208)
.++++...+. |.+.-|+.++|+... ..+.++ -+.++..|++.=. .-||+|.|+......+.+. -.-++++-.+.+
T Consensus 149 ~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tl 226 (329)
T TIGR03569 149 EAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVALGATVIEKHFTL 226 (329)
T ss_pred HHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHHcCCCEEEeCCCh
Confidence 8888887543 432126999998743 122333 3667777776543 4799999886543333332 223455555554
No 92
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=63.22 E-value=59 Score=24.08 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccE-
Q 040616 23 ESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDL- 101 (208)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl- 101 (208)
++.....++.|++.|.+.|++--... .=|.+++.-- .-.+++.|+.+.- ++
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~t------kDg~~vv~Hd-------------------i~tL~e~l~~~~~---~~~ 63 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLT------KDGVLVVIHD-------------------IPTLEEVLELVKG---GVG 63 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEc------CCCCEEEEcC-------------------CCCHHHHHHhccc---CcE
Confidence 36678889999999999886422111 1122333211 1124444444432 22
Q ss_pred EEeecCCCCCCHHHHHHHHH-HHHHcCCcceEeeCcccHHHHHHHhhcCC-------------------------ccEEe
Q 040616 102 YYQHRIDTKIPIEVTIGELK-RLVEEGKIKHIDLSEASASTIRRAHTIHP-------------------------ITVVR 155 (208)
Q Consensus 102 ~~lh~~~~~~~~~~~~~~l~-~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-------------------------~~~~q 155 (208)
+++.--++.. ..+.++.+. .+++-|.-+.+=++.|+++.+..+.+..| ++.+.
T Consensus 64 i~leiK~~~~-~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (189)
T cd08556 64 LNIELKEPTR-YPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVN 142 (189)
T ss_pred EEEEECCCCC-chhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEc
Confidence 3333222111 123333333 33344556777777777776666655421 12222
Q ss_pred eccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 156 LEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
..+.. ....+++.++++|+.+.+|..
T Consensus 143 ~~~~~----~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 143 PHYKL----LTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred cChhh----CCHHHHHHHHHcCCEEEEEcC
Confidence 22221 235789999999999999875
No 93
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=62.96 E-value=65 Score=24.47 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCC-CCCCchhhhcce--EEEEeecceecCCCC-ccCCCChHHHHHHHHHHHHHcCCCc
Q 040616 23 ESCMIALIHHAIDSGITVLDTSNV-YGPHTNEILLAR--VKLTTKFGIRYEDGK-YSYCGDPAYLRAACEASLKCLDVDC 98 (208)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~g~~e~~~g~--~~i~tK~~~~~~~~~-~~~~~~~~~i~~~~~~sL~~L~~d~ 98 (208)
+......+++-+..|..+ ++... |+ ....+-|+ ++|+|-.+.....+. .......+.+...++..++-+|.+.
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~--~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~G~~~ 170 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYP--SGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGILKFCGIKD 170 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTC--GEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHHHHTTEEE
T ss_pred ChhHHHHHHHhCcCCeee-eccccccc--cccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHHHhCCCce
Confidence 466888889989999988 65443 32 12334466 666666655221110 0122345677777899999999999
Q ss_pred ccEEEeecCC
Q 040616 99 IDLYYQHRID 108 (208)
Q Consensus 99 iDl~~lh~~~ 108 (208)
++.+.++...
T Consensus 171 ~~~~~~~~~~ 180 (199)
T PF02525_consen 171 VESFSFEGVD 180 (199)
T ss_dssp EEEEEEESTT
T ss_pred eeEEEEeCCC
Confidence 9999999876
No 94
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.90 E-value=55 Score=27.80 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHc-CC---cceEee--CcccHHHHHHHhhc---CCccEEeeccCcCCCC-----ccc---cHHHH
Q 040616 110 KIPIEVTIGELKRLVEE-GK---IKHIDL--SEASASTIRRAHTI---HPITVVRLEWSLRSRD-----VEE---EIVPT 172 (208)
Q Consensus 110 ~~~~~~~~~~l~~l~~~-G~---ir~iGv--s~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~-----~~~---~~l~~ 172 (208)
..+++++.+++.++.+. |+ +-++=+ -|.+.+++.++.+. .++.++-++||+.... ..+ .+.+.
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 34688888888877654 32 123322 26677777777664 5678899999985432 222 56777
Q ss_pred HHHhCCcEEEcccCcc
Q 040616 173 CRELGIGIVAYSLLGR 188 (208)
Q Consensus 173 ~~~~gi~v~a~~pl~~ 188 (208)
.+++|+.+......|.
T Consensus 302 L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHCCceEEEECCCCC
Confidence 8899999999888876
No 95
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=62.32 E-value=89 Score=26.53 Aligned_cols=115 Identities=11% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHCC---CCeEeCCCCCCCC--chhhhcce---EEEEeecceecCCCCccCCCChHHHHHHHHHHHH
Q 040616 21 KPESCMIALIHHAIDSG---ITVLDTSNVYGPH--TNEILLAR---VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLK 92 (208)
Q Consensus 21 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g--~~e~~~g~---~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 92 (208)
.+.++..+++....+.- +-.+|..+..+.- .-++.++. ++|.+|.-... .....+.+.+.+.+.++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~------k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLP------KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCC------CCCCHHHHHHHHHHHHH
Confidence 35566777666554321 2246765444311 12233433 88999987532 23445667777777777
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHH
Q 040616 93 CLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTI 142 (208)
Q Consensus 93 ~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 142 (208)
..+....|++.+-. -....++++++.+.++.+.+.+--+|.+|..-..+
T Consensus 122 ~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 122 ELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 77765446666543 33456888999998887777899999999766543
No 96
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.02 E-value=46 Score=28.00 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=60.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~ 176 (208)
.++.++-.|-+ .+-++.+.++++.-.+ -+.|=|-++.+.+..+++...++++|+..+..-. ..-..+...|+.+
T Consensus 203 ~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~ 278 (354)
T cd03317 203 YGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEH 278 (354)
T ss_pred CCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 46666666532 2346667777765433 4566677899999999988888999997765432 1134789999999
Q ss_pred CCcEEEcccCccc
Q 040616 177 GIGIVAYSLLGRG 189 (208)
Q Consensus 177 gi~v~a~~pl~~G 189 (208)
|+.++..+...++
T Consensus 279 gi~~~~g~~~es~ 291 (354)
T cd03317 279 GIPVWCGGMLESG 291 (354)
T ss_pred CCcEEecCcccch
Confidence 9999876655433
No 97
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=61.26 E-value=52 Score=26.72 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHc
Q 040616 24 SCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCL 94 (208)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 94 (208)
+...+.++..-+.|..+|..+..-+....+..+.- +-..-.+. ..+.++..++..+... ..+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt--------~r~~n~~~l~~~L~~~-~~~ 85 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLT--------CIGATREEIREILREY-REL 85 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEee--------ecCCCHHHHHHHHHHH-HHC
Confidence 44555555555778999998766552222222211 00001111 1234566677776644 777
Q ss_pred CCCcccEEEee-cCC------CCCCHHHHHHHHHHHHHcCCcceEeeCccc--------H-HHHHHHhhc----CCccEE
Q 040616 95 DVDCIDLYYQH-RID------TKIPIEVTIGELKRLVEEGKIKHIDLSEAS--------A-STIRRAHTI----HPITVV 154 (208)
Q Consensus 95 ~~d~iDl~~lh-~~~------~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~----~~~~~~ 154 (208)
|++ +++.+- +|. ....+....+.++.+++..---+||++.+. . +++..+.+. ..+-+-
T Consensus 86 Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT 163 (272)
T TIGR00676 86 GIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT 163 (272)
T ss_pred CCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee
Confidence 754 233333 222 112233455555555554223578877532 1 234444433 346667
Q ss_pred eeccCcCCCCccccHHHHHHHhCCcE
Q 040616 155 RLEWSLRSRDVEEEIVPTCRELGIGI 180 (208)
Q Consensus 155 q~~~~~~~~~~~~~~l~~~~~~gi~v 180 (208)
|.-|++-. -..+++.|++.|+.+
T Consensus 164 Q~~fd~~~---~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 164 QLFFDNDD---YYRFVDRCRAAGIDV 186 (272)
T ss_pred ccccCHHH---HHHHHHHHHHcCCCC
Confidence 77666432 247888999997654
No 98
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=60.76 E-value=20 Score=25.87 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred ccccHHHHHHHhCCcEEEcccCc
Q 040616 165 VEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 165 ~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
...++++.|+++||.|++|-.+.
T Consensus 45 llge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeee
Confidence 34589999999999999988776
No 99
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.73 E-value=44 Score=26.26 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh---cCCccEE
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT---IHPITVV 154 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 154 (208)
++.+... .+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++.+++ ...++.+
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4444444 45556999999999988 332222223344555555555 4445556666666666444 2445555
Q ss_pred eeccCcCC--------------CCccccHHHHHHHhCCcEEE
Q 040616 155 RLEWSLRS--------------RDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 155 q~~~~~~~--------------~~~~~~~l~~~~~~gi~v~a 182 (208)
.+..+.-. ...-.+.+++++++|..+..
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~ 126 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF 126 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe
Confidence 55433322 11123789999999999843
No 100
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=60.61 E-value=51 Score=28.92 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee-cCC----------CCC-CHHH---HHH-HHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH-RID----------TKI-PIEV---TIG-ELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~----------~~~-~~~~---~~~-~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+.+.++..++ ++.+++.++.+- .|. ... +.++ .++ +.+.|.+.|. ..++++||..
T Consensus 214 gqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 214 KQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 4678888888876655 899999998762 221 001 1222 223 3455556675 6799999874
No 101
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=60.56 E-value=1e+02 Score=25.98 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeec--------CCCCCCHHHHHHHHHHHHHc-CCcceEeeC---cccHHHHH
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHR--------IDTKIPIEVTIGELKRLVEE-GKIKHIDLS---EASASTIR 143 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~--------~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~ 143 (208)
..++.+.+.+-+ +.|.+.|+++|.+-..-. -.+..+ .++.++.+.+. ...+...+. ..+.+.++
T Consensus 20 ~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 456666665544 559999999999963211 011122 24444444322 234444333 22566777
Q ss_pred HHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 144 RAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 144 ~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
.+.+. .++++.+..+.-......+.+++++++|..+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 77665 3455555444333323457899999999887764
No 102
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=60.47 E-value=99 Score=25.74 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCc------hhhhcc---------------------eEEEEeecceecCCCCc
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHT------NEILLA---------------------RVKLTTKFGIRYEDGKY 74 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------~e~~~g---------------------~~~i~tK~~~~~~~~~~ 74 (208)
.++...++-+..+++|-..+.|-..-++-. -|..+- +.||..-+++..+.-..
T Consensus 51 ~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~ 130 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSI 130 (311)
T ss_pred CcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCc
Confidence 446577777777899999999854322100 111000 16777777766542222
Q ss_pred cC--CCChHHHHHHHHHHHHHcCCCcccEEEeecCCC
Q 040616 75 SY--CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT 109 (208)
Q Consensus 75 ~~--~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~ 109 (208)
.+ ..+.+.++++..+..+-|=-.=+|++++....+
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D 167 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD 167 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc
Confidence 33 578899999999999888767799999987644
No 103
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=60.47 E-value=1e+02 Score=25.77 Aligned_cols=125 Identities=11% Similarity=0.102 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------EEEEeecceecCCCCccCCCChHHHHHHHHH
Q 040616 21 KPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEA 89 (208)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (208)
.+.++..++++.+.+.|+..|--. | -|..+-. .-...++.... + ...+.+ .-+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G---GEPllr~dl~~li~~i~~~~~l~~i~itT-N--------G~ll~~-~~~ 108 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G---GEPLVRRGCDQLVARLGKLPGLEELSLTT-N--------GSRLAR-FAA 108 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C---cCCCccccHHHHHHHHHhCCCCceEEEEe-C--------hhHHHH-HHH
Confidence 467788899999999999877543 3 2444332 00000111110 0 111222 345
Q ss_pred HHHHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----cceEeeCcccHHHHHHHhhc---CCccEE
Q 040616 90 SLKCLDVDCIDLYYQHRIDTK--------IPIEVTIGELKRLVEEGK----IKHIDLSEASASTIRRAHTI---HPITVV 154 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~~~~~ 154 (208)
.|...|++++. +-++..+++ ..++.+++.++.+++.|. |..+.+...+.+++.++++. .++++.
T Consensus 109 ~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 109 ELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred HHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 56667777665 355555332 247789999999999886 23344445666766666554 445555
Q ss_pred eeccCcCC
Q 040616 155 RLEWSLRS 162 (208)
Q Consensus 155 q~~~~~~~ 162 (208)
-++|-|+.
T Consensus 188 ~ie~mP~g 195 (329)
T PRK13361 188 FIEEMPLG 195 (329)
T ss_pred EEecccCC
Confidence 55666644
No 104
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=60.37 E-value=63 Score=27.67 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=58.5
Q ss_pred EEEeecCCC------------CCCHHHHHHHHHHH-HHcC---CcceEeeC--cccHHHHHHHhhc---CCccEEeeccC
Q 040616 101 LYYQHRIDT------------KIPIEVTIGELKRL-VEEG---KIKHIDLS--EASASTIRRAHTI---HPITVVRLEWS 159 (208)
Q Consensus 101 l~~lh~~~~------------~~~~~~~~~~l~~l-~~~G---~ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~ 159 (208)
.+.||.+++ ..+++++++++.+. .+.| +|+++=+. |.+.+++.++.+. .+..++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 467887632 24678888888764 4455 24455554 4555555555544 55678889999
Q ss_pred cCCCC--------ccccHHHHHHHhCCcEEEcccCcc
Q 040616 160 LRSRD--------VEEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 160 ~~~~~--------~~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
++... .-..+.+..+++|+.++.....+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 87543 122677888899999999888765
No 105
>PLN00191 enolase
Probab=60.36 E-value=81 Score=27.90 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHH-CCCC-----eEeCCCC--CCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHH
Q 040616 22 PESCMIALIHHAID-SGIT-----VLDTSNV--YGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKC 93 (208)
Q Consensus 22 ~~~~~~~~l~~A~~-~Gi~-----~~DtA~~--Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 93 (208)
+.+++.+++..|++ +|++ -+|.|.. |. . =|+..+-.|... .++ ....+++...+-++..++
T Consensus 241 ~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~---~---~~~Y~~~~~~~~--~~~--~~~~s~~e~i~~~~~L~~- 309 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYT---K---DKKYDLDFKEEN--NDG--SNKKSGDELIDLYKEFVS- 309 (457)
T ss_pred CHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcc---c---CCceEeeccccC--CCc--ccccCHHHHHHHHHHHhh-
Confidence 66789999999996 5765 2455432 21 0 011111111100 000 012455555554444443
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEee-C-cccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHH
Q 040616 94 LDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDL-S-EASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIV 170 (208)
Q Consensus 94 L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-s-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l 170 (208)
..++.++-.|-+. +-|+.+.+|.+..++.-+|= + ..+++.+.++++....+++++..|-.-.- .-.++.
T Consensus 310 ----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a 381 (457)
T PLN00191 310 ----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAV 381 (457)
T ss_pred ----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHH
Confidence 3457788877443 34677777888777766661 2 35688999999988889999988865432 233799
Q ss_pred HHHHHhCCcEEEcc
Q 040616 171 PTCRELGIGIVAYS 184 (208)
Q Consensus 171 ~~~~~~gi~v~a~~ 184 (208)
+.|+++|+.++...
T Consensus 382 ~lA~~~G~~~~ish 395 (457)
T PLN00191 382 KMSKAAGWGVMTSH 395 (457)
T ss_pred HHHHHCCCEEEeCC
Confidence 99999999998744
No 106
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=60.25 E-value=76 Score=26.14 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=68.3
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHH-----HHHHHHHHcCCcceEeeCcccHH-------HHHHHhhcCCccEEeecc
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTI-----GELKRLVEEGKIKHIDLSEASAS-------TIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~-----~~l~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 158 (208)
++.++-.++|+..+..+.......+.. +.+-++..+--=|++|+.+.++. ++++..+. .-++++..
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~--~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE--LGFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh--cCceEEEe
Confidence 788888899999988421222222222 46777777777889999887654 34444433 33455555
Q ss_pred CcCCCC-----c-cccHHHHHHHhCCcEEEcccCccccc------CCCCCcccchhhc
Q 040616 159 SLRSRD-----V-EEEIVPTCRELGIGIVAYSLLGRGFL------SSGPKLIHLSATK 204 (208)
Q Consensus 159 ~~~~~~-----~-~~~~l~~~~~~gi~v~a~~pl~~G~l------~~~~~~~~~a~~~ 204 (208)
++..+. . -..++++|+++|+.|+-+.....+.. .....+.++|+++
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~f 190 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKF 190 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHC
Confidence 544432 1 13699999999999997655443321 1122456666665
No 107
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=60.17 E-value=88 Score=25.04 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=77.5
Q ss_pred HHHHHCCCCeEeCCCCCCCCchhhhcce----------------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHc
Q 040616 31 HHAIDSGITVLDTSNVYGPHTNEILLAR----------------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCL 94 (208)
Q Consensus 31 ~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 94 (208)
..|++.|..+||.=+. +|-.+|. .-+|..++- ....|..+..+....- ..
T Consensus 14 ~~a~~~gaDiID~K~P-----~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGD--------lp~~p~~~~~aa~~~a-~~ 79 (235)
T PF04476_consen 14 EEALAGGADIIDLKNP-----AEGALGALFPWVIREIVAAVPGRKPVSATIGD--------LPMKPGTASLAALGAA-AT 79 (235)
T ss_pred HHHHhCCCCEEEccCC-----CCCCCCCCCHHHHHHHHHHcCCCCceEEEecC--------CCCCchHHHHHHHHHH-hc
Confidence 5567999999997443 3334443 334444432 1244666665554443 45
Q ss_pred CCCcccEEEeecCCCCCCHHHHHH----HHHHHHHcCCcceEeeCcc------cHHHHHHHhhcCCccEEeecc------
Q 040616 95 DVDCIDLYYQHRIDTKIPIEVTIG----ELKRLVEEGKIKHIDLSEA------SASTIRRAHTIHPITVVRLEW------ 158 (208)
Q Consensus 95 ~~d~iDl~~lh~~~~~~~~~~~~~----~l~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~------ 158 (208)
|+||+-+=+.-..+.+. ..+.|+ ++.+...+-++-+.+.+.+ ++..+.++.....++.+|+.-
T Consensus 80 GvdyvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~ 158 (235)
T PF04476_consen 80 GVDYVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGG 158 (235)
T ss_pred CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCC
Confidence 88998887764332211 122222 2233333456788888876 456677776666678887732
Q ss_pred CcCCCC---ccccHHHHHHHhCCcE
Q 040616 159 SLRSRD---VEEEIVPTCRELGIGI 180 (208)
Q Consensus 159 ~~~~~~---~~~~~l~~~~~~gi~v 180 (208)
++++.- ...++++.|+++|+.+
T Consensus 159 ~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 159 SLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred chhhcCCHHHHHHHHHHHHHccchh
Confidence 233332 2236888899998754
No 108
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=59.89 E-value=1e+02 Score=25.72 Aligned_cols=109 Identities=19% Similarity=0.109 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEeeCc---------ccHHHHHHHhhc
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGKIKHIDLSE---------ASASTIRRAHTI 148 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 148 (208)
+.+.+.+.++..-+..+ +.-+.+=.-++.. +.....+.++.+++.+.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 33445544443333222 3334443334432 2356777788888888776555533 344445555554
Q ss_pred CCccEEeeccCcCC--CCccccHHHHHHHhCCcEEEcccCcccc
Q 040616 149 HPITVVRLEWSLRS--RDVEEEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 149 ~~~~~~q~~~~~~~--~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
....++.+..|-.. ...-..-++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 43334444443111 1112267888889999999999998875
No 109
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=59.62 E-value=87 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh 105 (208)
..+.+.+++.++..+ +++.+++.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 456777777776664 4788888887655
No 110
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=59.49 E-value=24 Score=31.46 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=44.7
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CC--ccEEeecc
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HP--ITVVRLEW 158 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~--~~~~q~~~ 158 (208)
+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-.--.+.++++++. .. +..-|...
T Consensus 192 ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 192 RIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SST
T ss_pred HHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcc
Confidence 445788889999873 45899999999999999999999988677888888876 22 33445544
No 111
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=59.46 E-value=1.3e+02 Score=26.80 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=60.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEeeCc----c--cHHHHHHHhhc
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG-KIKHIDLSE----A--SASTIRRAHTI 148 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~ 148 (208)
...+++.+.+.++...++.|+.. +.+.+.+...+...+.+.++++++.| .--.+++++ . +.+.+. +++.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~-~l~~ 295 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILH-LYRR 295 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHH-HHHH
Confidence 45688889999999888888654 34444444445556677778888887 323444432 1 233333 3333
Q ss_pred CCccEEeeccCcCCC--------C----ccccHHHHHHHhCCcEEEcccC
Q 040616 149 HPITVVRLEWSLRSR--------D----VEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 149 ~~~~~~q~~~~~~~~--------~----~~~~~l~~~~~~gi~v~a~~pl 186 (208)
..+..+++-.--.+. . ...+.++.++++||.+.+.--+
T Consensus 296 aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 296 AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 333333332222111 1 1226788899999887654433
No 112
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.37 E-value=30 Score=26.96 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 116 TIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
..+.+++++++.-=-.||..+ .+.++++++++..- |+-.+|.. ..+++++|+++||.++-
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~FivSP~~---~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFIVSPGT---TQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEEECCCC---CHHHHHHHHHcCCCEeC
Confidence 344444554443223577755 57788888877642 22333332 45888889988888773
No 113
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=59.08 E-value=49 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 81 AYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 81 ~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
..+.+.+++.++.++.+ +.++ .+...+.++..+.++.+..+| +..|=++.
T Consensus 14 ~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 44677777777777743 2222 222344566677777777766 66665554
No 114
>PHA02128 hypothetical protein
Probab=58.74 E-value=31 Score=23.95 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh-----------------cCC-ccEE---eeccCcCCCCccccHHHH
Q 040616 114 EVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT-----------------IHP-ITVV---RLEWSLRSRDVEEEIVPT 172 (208)
Q Consensus 114 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-----------------~~~-~~~~---q~~~~~~~~~~~~~~l~~ 172 (208)
...+....++..+|-+|-|-+..-+..++..... ..| ..+. +.+|.+..+....++.+|
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 4556777888889999988887655544444332 222 2233 347888888766799999
Q ss_pred HHHhCCcEEEc
Q 040616 173 CRELGIGIVAY 183 (208)
Q Consensus 173 ~~~~gi~v~a~ 183 (208)
+-.||+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998765
No 115
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=58.57 E-value=58 Score=28.60 Aligned_cols=86 Identities=7% Similarity=0.020 Sum_probs=55.9
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCc
Q 040616 101 LYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIG 179 (208)
Q Consensus 101 l~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~ 179 (208)
+.++-.|-+..+..+-++.+.++++.-.+ -+.|-+.++..++..+++..-++++|......--..-..+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 44566554322211126677778776555 34455667888999999888888888876422111134899999999999
Q ss_pred EEEcccC
Q 040616 180 IVAYSLL 186 (208)
Q Consensus 180 v~a~~pl 186 (208)
+..++.+
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8887543
No 116
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=58.55 E-value=29 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEE
Q 040616 91 LKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVV 154 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 154 (208)
-+||.+.|+|.. ..+++|+++..++..++|+-.+||+-.--.+.++++++. ..||++
T Consensus 204 ~~Rl~t~y~d~~-------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEI-------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhh-------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 368888999865 346899999999999999999999998778889999887 345544
No 117
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.91 E-value=97 Score=24.84 Aligned_cols=102 Identities=17% Similarity=0.085 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG-KIKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.++.+.. ..+-+.|.++|+++|++-+ |.. -+.-|+.+.++.+.+ .++....+..+.+.++.+.+.. ++.+.
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCEEE
Confidence 4454444 4455669999999999963 221 123456667776643 4677777777788888877653 34444
Q ss_pred eccCcCCC--------C------ccccHHHHHHHhCCcEEEcccC
Q 040616 156 LEWSLRSR--------D------VEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 156 ~~~~~~~~--------~------~~~~~l~~~~~~gi~v~a~~pl 186 (208)
+.++.-.. . .-.+.+++|+++|+.+....+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 132 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED 132 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc
Confidence 43322111 0 1126788999999976644443
No 118
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=57.36 E-value=1.2e+02 Score=25.74 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=59.2
Q ss_pred CcccEE-EeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEeeC--cccHHHHHHHhhc---C-----C
Q 040616 97 DCIDLY-YQHRIDTK-----------IPIEVTIGELKRLVE-EGK---IKHIDLS--EASASTIRRAHTI---H-----P 150 (208)
Q Consensus 97 d~iDl~-~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~~---~-----~ 150 (208)
.++|+. .+|.+++. .+++++++++.+..+ .|. |+++=+. |.+.+++.++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 457774 47776432 356777777766665 332 3444443 5566676666654 2 3
Q ss_pred ccEEeeccCcCCCC------c----cccHHHHHHHhCCcEEEcccCcc
Q 040616 151 ITVVRLEWSLRSRD------V----EEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 151 ~~~~q~~~~~~~~~------~----~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
..++-++||++... + -..+.+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 56888899986421 1 12577888899999998887765
No 119
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.06 E-value=1e+02 Score=24.78 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CC----HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYY-QHRIDTK-IP----IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPI 151 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lh~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 151 (208)
.+.+.+.+..++.+ .-|-|.||+=. --+|+.. .+ .+.+...++.+++.-.+ -|.+-+++++.++++++...+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45556655555544 55889999864 2334321 11 23345566666655233 378889999999999998744
Q ss_pred cEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcc
Q 040616 152 TVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 152 ~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
-+|=+ +.... ..++++.++++|..++.+..-+.
T Consensus 99 iINdi--s~~~~--~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 99 IINDV--SGGRG--DPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred EEEeC--CCCCC--ChHHHHHHHHcCCCEEEECcCCC
Confidence 33332 22221 25789999999999998765443
No 120
>TIGR03586 PseI pseudaminic acid synthase.
Probab=56.78 E-value=1.2e+02 Score=25.55 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceE-EEEeecceec-----------CCCCc----cCCCChHHHHH
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARV-KLTTKFGIRY-----------EDGKY----SYCGDPAYLRA 85 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~-~i~tK~~~~~-----------~~~~~----~~~~~~~~i~~ 85 (208)
+.+...++.+++-+.|+.++=|...-. +-..+-++ +=.-|++... ..+.+ ....+.+.+..
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~ 151 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDET---AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQE 151 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHH---HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 556667888889999999986654322 11222110 1111111100 00000 01236788888
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCC-CCHHH-HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEEeeccCc
Q 040616 86 ACEASLKCLDVDCIDLYYQHRIDTK-IPIEV-TIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVVRLEWSL 160 (208)
Q Consensus 86 ~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~ 160 (208)
+++...+ -|. -|+.++|+.... .+.++ -+.++..|++.=. .-||+|.|+......+.+. ...++++-.+++
T Consensus 152 Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tl 225 (327)
T TIGR03586 152 AVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVALGACVIEKHFTL 225 (327)
T ss_pred HHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHHcCCCEEEeCCCh
Confidence 8877753 332 479999986332 22333 3677777776543 4799999886543333332 223455555555
No 121
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.76 E-value=1e+02 Score=26.23 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC--C--cceEeeC--cccHHHHHHHhhc---CCccEEeeccCcC
Q 040616 102 YYQHRIDTK-----------IPIEVTIGELKRLVEEG--K--IKHIDLS--EASASTIRRAHTI---HPITVVRLEWSLR 161 (208)
Q Consensus 102 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~~ 161 (208)
+-+|.+++. .+++++++++.+..+.+ + ++++=+. |.+.+++.++.+. .+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 668887542 34577888887776654 2 3455555 4556766666554 5567888999986
Q ss_pred CCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 162 SRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 162 ~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
... +.. .+.+.++++||.+......+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 421 111 466778889999999988865
No 122
>smart00642 Aamy Alpha-amylase domain.
Probab=56.44 E-value=15 Score=27.54 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.4
Q ss_pred cccHHHHHHHhCCcEEEcccCc
Q 040616 166 EEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
-+.+++.|+++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 3489999999999999755544
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=56.12 E-value=1e+02 Score=24.65 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHcCCcceEeeCc----ccHHHHHHHhhcC--CccEEeeccCcCCCCcc-ccHHHHHHHhCCcEEEc
Q 040616 111 IPIEVTIGELKRLVEEGKIKHIDLSE----ASASTIRRAHTIH--PITVVRLEWSLRSRDVE-EEIVPTCRELGIGIVAY 183 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~-~~~l~~~~~~gi~v~a~ 183 (208)
.+.+.+.+..+++.+.| +..|.++. ..|+++.+++... ... +.+.+|.-+..-. ..-.-.|-+.|+..+--
T Consensus 136 ~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~ 213 (259)
T cd07939 136 ADPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSV 213 (259)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEE
Confidence 45667777777777777 57788775 4667766665541 111 3555555544211 12223344789999888
Q ss_pred ccCcccccCCCCCcccch
Q 040616 184 SLLGRGFLSSGPKLIHLS 201 (208)
Q Consensus 184 ~pl~~G~l~~~~~~~~~a 201 (208)
+..+-|.-.++....++.
T Consensus 214 s~~G~G~~aGN~~tE~lv 231 (259)
T cd07939 214 TVNGLGERAGNAALEEVV 231 (259)
T ss_pred ecccccccccCcCHHHHH
Confidence 888778777777655544
No 124
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=55.98 E-value=76 Score=24.41 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCC--CCCCHHHHHHHHHHHHHcCCcceEeeCcccHH--HHHHHhhcCCccEEeec
Q 040616 82 YLRAACEASLKCLDVDCIDLYYQHRID--TKIPIEVTIGELKRLVEEGKIKHIDLSEASAS--TIRRAHTIHPITVVRLE 157 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~d~iDl~~lh~~~--~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~--~l~~~~~~~~~~~~q~~ 157 (208)
.+...+...++..+... +-+.+--.+ .........+.+..|++.|- .+.+.+|... .+. .+...+|+.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~-~l~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLS-YLKRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHH-HHHhCCCCeEEEC
Confidence 34455666666666542 222222111 11223445688999999997 5666666432 233 3334567877776
Q ss_pred cCcCCCC--------ccccHHHHHHHhCCcEEEcc
Q 040616 158 WSLRSRD--------VEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 158 ~~~~~~~--------~~~~~l~~~~~~gi~v~a~~ 184 (208)
-+..... .-..++..|+..|+.+++-.
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 5544321 22367899999999999754
No 125
>PRK00077 eno enolase; Provisional
Probab=55.85 E-value=1.4e+02 Score=26.06 Aligned_cols=96 Identities=6% Similarity=-0.045 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEeeC--cccHHHHHHHhhcCCccE
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG--KIKHIDLS--EASASTIRRAHTIHPITV 153 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 153 (208)
.+++...+.+.+.++. .+++++-.|-+.. -|+.+.+|.+.- ++.-.|== ..++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 3555555555555544 4577888775433 355666666653 45433322 246899999999888899
Q ss_pred EeeccCcCCCC-ccccHHHHHHHhCCcEEE
Q 040616 154 VRLEWSLRSRD-VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 154 ~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a 182 (208)
+|+..+-.-.- .-.++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99988865431 133789999999998665
No 126
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.77 E-value=1.2e+02 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccE
Q 040616 79 DPAYLRAACEASLKCLDVDCIDL 101 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl 101 (208)
+++.+.+.+++.++ .|.+.+++
T Consensus 134 ~~~~~~~~~~~~~~-~Gf~~iKi 155 (316)
T cd03319 134 TPEAMAAAAKKAAK-RGFPLLKI 155 (316)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEE
Confidence 45666666666554 35444444
No 127
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=55.59 E-value=59 Score=27.64 Aligned_cols=95 Identities=7% Similarity=-0.037 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeecc
Q 040616 82 YLRAACEASLKCLDVDCIDLYYQHRIDTK---IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 158 (208)
.-+-.+-+.|.++|+++|++-..-.|..- .+.+++.+++. +...++..+++ .+...++.+++... +.+.+.+
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~~ 142 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-KEVAVFA 142 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-CEEEEEE
Confidence 34556667799999999999755554211 13344555554 32335555554 48888999887632 3333332
Q ss_pred Cc--------CCCC------ccccHHHHHHHhCCcEE
Q 040616 159 SL--------RSRD------VEEEIVPTCRELGIGIV 181 (208)
Q Consensus 159 ~~--------~~~~------~~~~~l~~~~~~gi~v~ 181 (208)
+. +... .-.+.+++++++|+.+.
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 21 1111 11268899999999885
No 128
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=55.44 E-value=89 Score=26.90 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeec-CCC-----------CC-CHHH---HH-HHHHHHHHcCCcceEeeCccc
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDT-----------KI-PIEV---TI-GELKRLVEEGKIKHIDLSEAS 138 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~-----------~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~ 138 (208)
+..+.+.+++.++..++ |+.++|.+|.+.- |.. .. +.++ .+ .+.+.|.+.|.. .+++|||.
T Consensus 172 Pgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 249 (390)
T PRK06582 172 SGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYA 249 (390)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeee
Confidence 35677888888888886 7999999998763 211 01 1122 23 344556677764 47999987
Q ss_pred H
Q 040616 139 A 139 (208)
Q Consensus 139 ~ 139 (208)
.
T Consensus 250 ~ 250 (390)
T PRK06582 250 K 250 (390)
T ss_pred C
Confidence 4
No 129
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.15 E-value=1.2e+02 Score=25.95 Aligned_cols=86 Identities=13% Similarity=0.259 Sum_probs=54.9
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHHHcC-------CcceEeeC--cccHHHHHHHhhc---CCccEEeeccC
Q 040616 103 YQHRIDTK-----------IPIEVTIGELKRLVEEG-------KIKHIDLS--EASASTIRRAHTI---HPITVVRLEWS 159 (208)
Q Consensus 103 ~lh~~~~~-----------~~~~~~~~~l~~l~~~G-------~ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~ 159 (208)
.||.++++ .++++.++++.+..++- .||++=+. |.+.+.++++.+. .+..++-++||
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN 300 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWN 300 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCC
Confidence 48987543 34667777766665432 24666665 4566766666554 45688999999
Q ss_pred cCCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 160 LRSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 160 ~~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
++... +.. .+.+..+++|+.+......+.
T Consensus 301 ~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 301 PFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 86521 111 366677888999988655544
No 130
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=55.00 E-value=84 Score=25.22 Aligned_cols=101 Identities=14% Similarity=0.049 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--eeCcccHHHHHHHhhcCCccEEe
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHI--DLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.+.++|.+.+.+.- .+--|+.=||.-|+. -+..+++.|++|.+.|.=-.+ |||.|.+....-=.+..-|.+.|
T Consensus 59 ~tLeeIi~~m~~a~----~~Gk~VvRLhSGDps-iYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQ 133 (254)
T COG2875 59 LTLEEIIDLMVDAV----REGKDVVRLHSGDPS-IYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQ 133 (254)
T ss_pred CCHHHHHHHHHHHH----HcCCeEEEeecCChh-HHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcce
Confidence 34444444443333 345789999987664 367889999999999975444 67776654433223334444555
Q ss_pred e----ccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 156 L----EWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 156 ~----~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
. +.+--.+-++.+-++...++|.....|
T Consensus 134 tvilTR~sgrt~vpe~e~l~~la~~~aTm~I~ 165 (254)
T COG2875 134 TVILTRPSGRTPVPEKESLAALAKHGATMVIF 165 (254)
T ss_pred eEEEEccccCCCCCchhHHHHHHhcCceeEee
Confidence 3 444333335678888888888766654
No 131
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=54.69 E-value=44 Score=26.09 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEeecc
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~ 158 (208)
++...+ +-+.|-+-|+..+.+=+ +. .+..+.+++++++.-=-.||..+ .+.++++++++..- +++ .
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi---v 85 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI---V 85 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---E
Confidence 344333 33445555655444433 11 33455555555543324578766 67888888888642 222 3
Q ss_pred CcCCCCccccHHHHHHHhCCcEEE
Q 040616 159 SLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
+|.. ..+++++|+++|+.++.
T Consensus 86 sP~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 SPGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCC---CHHHHHHHHHcCCcEEC
Confidence 3433 45899999999998774
No 132
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=54.61 E-value=54 Score=28.65 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc--------CCccEEeeccCc
Q 040616 90 SLKCLDVDCIDLYYQHRIDT-KIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI--------HPITVVRLEWSL 160 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~~~ 160 (208)
.++.+|++|. ++..|.. ... ..+-...+-+.|-+..+|....+++++++.++. .|+-+|-+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3456676655 3333322 111 223344566889999999999999888776654 24555554 333
Q ss_pred CCCCccccHHHHHHHhCCcEEEccc
Q 040616 161 RSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 161 ~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
-++..+.+.++.+.++|+.++.-+-
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 3333345789999999998876553
No 133
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.43 E-value=1.1e+02 Score=24.56 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc--CCccEE
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI--HPITVV 154 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 154 (208)
..+++.+.+..++.++ -|-|+||+=. .|......++.-+.+..+++.-. .-|.+-+++++.++++++. ...-+|
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3456666666666664 4899999864 34322222333333333332211 2477778999999999987 443344
Q ss_pred eeccCcCCCCccccHHHHHHHhCCcEEEcccCccc
Q 040616 155 RLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 155 q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
-+.....+. ....+++.++++|..++.+.--..|
T Consensus 98 sIs~~~~~e-~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SINLEDGEE-RFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eCCCCCCcc-ccHHHHHHHHHhCCCEEEeccCCCC
Confidence 333221111 1346889999999999987653334
No 134
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.93 E-value=57 Score=25.12 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCc---
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDC--- 98 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~--- 98 (208)
+++.+.++++.+++.|+...|.-...= -..-..+|+.+-..++.... .....+.+++.+......+....
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~vG~~w~~~~i~va~------e~~as~~~~~~l~~l~~~~~~~~~~~ 81 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL-APGMDIVGDKYEEGEIFVPE------LLMAADAMKAGLDLLKPLLGKSKSAK 81 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHccCCeeHHH------HHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 677899999999999977554321110 01233344322222222110 01122334444444444443321
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHh
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCREL 176 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~ 176 (208)
---+++-.+..+..--...=.-.-++..|.= .++| .+.+.+.+.+++....|+++-+.++..... .-..+++.+++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 1234555543332211122222355567764 5677 566888899888888999999888655543 223788888888
Q ss_pred CC
Q 040616 177 GI 178 (208)
Q Consensus 177 gi 178 (208)
+.
T Consensus 161 ~~ 162 (201)
T cd02070 161 GL 162 (201)
T ss_pred CC
Confidence 54
No 135
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=53.73 E-value=1.5e+02 Score=25.84 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEeeCc--ccHHHHHHHhhcCCccEE
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG--KIKHIDLSE--ASASTIRRAHTIHPITVV 154 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~~ 154 (208)
+++...+-++..++. .++.++-.|-+.. -|+.+.+|.+.- .+.-.|==. .++..+.++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444444444434433 4677787774432 366666666553 444333222 258999999998888999
Q ss_pred eeccCcCCCC-ccccHHHHHHHhCCcEEE
Q 040616 155 RLEWSLRSRD-VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 155 q~~~~~~~~~-~~~~~l~~~~~~gi~v~a 182 (208)
|+..+-.-.- .-.++...|+++|+.++.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 9988765431 133789999999998554
No 136
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=94 Score=23.23 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=57.0
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCC--ccEEeeccCcCCCC-----ccccHHHHHHH
Q 040616 103 YQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHP--ITVVRLEWSLRSRD-----VEEEIVPTCRE 175 (208)
Q Consensus 103 ~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~--~~~~q~~~~~~~~~-----~~~~~l~~~~~ 175 (208)
++..|.. ...+++++...+=-++.-|++|-|++.+.....++++..+ +.++-+.|+..... .+.++-+..++
T Consensus 3 yf~~pG~-eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 3 YFEKPGK-ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred cccCCcc-cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 3444432 3356777776666677788999988777666666666532 44555666654433 45588999999
Q ss_pred hCCcEEEcccCccc
Q 040616 176 LGIGIVAYSLLGRG 189 (208)
Q Consensus 176 ~gi~v~a~~pl~~G 189 (208)
+|..++.-|-.-+|
T Consensus 82 rGa~v~~~sHalSg 95 (186)
T COG1751 82 RGAKVLTQSHALSG 95 (186)
T ss_pred cCceeeeehhhhhc
Confidence 99999876655444
No 137
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.38 E-value=85 Score=26.73 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC----CcceEeeC--cccHHHHHHHhhc---CCccEEeeccCcC
Q 040616 102 YYQHRIDTK-----------IPIEVTIGELKRLVEEG----KIKHIDLS--EASASTIRRAHTI---HPITVVRLEWSLR 161 (208)
Q Consensus 102 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~~ 161 (208)
+-||.+++. .++++++++++++.+.+ +|+++=+. |.+.++++++.+. .+..++-++||+.
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 667777543 34688999999887744 23455444 4455666666554 5567888899987
Q ss_pred CCC-----ccc---cHHHHHHHhCCcEEEcccCcc
Q 040616 162 SRD-----VEE---EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 162 ~~~-----~~~---~~l~~~~~~gi~v~a~~pl~~ 188 (208)
... ..+ .+.+.++++|+.+......+.
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 531 122 566678999999998877765
No 138
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.16 E-value=62 Score=28.53 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCC--CCCHHHHHHHHHHHHHcC-Ccce---------EeeCcccHHH----
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDT--KIPIEVTIGELKRLVEEG-KIKH---------IDLSEASAST---- 141 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G-~ir~---------iGvs~~~~~~---- 141 (208)
++.+...+ +-..|.++|++.|++.-=...+. ..--++.|+.+..+++.. .++. +|.+++..+.
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 44444443 44568888999999840000000 001123577777776652 2332 4555554433
Q ss_pred HHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 142 IRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 142 l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
++++.+ ..++++.+-.++-+...-...+++++++|+.+.+
T Consensus 102 v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 344443 3456666654443332234789999999987654
No 139
>PTZ00081 enolase; Provisional
Probab=52.10 E-value=1.7e+02 Score=25.82 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEee--CcccHHHHHHHhhcCCccE
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG--KIKHIDL--SEASASTIRRAHTIHPITV 153 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 153 (208)
.+++++.+-..+.++.+ +++++-.|-+. +-|+.+.+|.+.- .+.-+|= +..+++.+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56666666666666665 46777776443 3355666666543 5544443 2457899999999988899
Q ss_pred EeeccCcCCCC-ccccHHHHHHHhCCcEEEc
Q 040616 154 VRLEWSLRSRD-VEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 154 ~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~ 183 (208)
+|+..|-.-.- .-.++...|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 99988865421 1337899999999998873
No 140
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=51.72 E-value=55 Score=22.61 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=34.8
Q ss_pred eCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 134 LSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 134 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
.+..+.+.+..+....+|+++-+--..-.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 44556677777665444666655444333334568999999999999987654
No 141
>PRK07328 histidinol-phosphatase; Provisional
Probab=51.38 E-value=1.3e+02 Score=24.27 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCC-------------CCHHHHH----HHHHHHHHcCCcceEee
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTK-------------IPIEVTI----GELKRLVEEGKIKHIDL 134 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~-------------~~~~~~~----~~l~~l~~~G~ir~iGv 134 (208)
...+++.|++...||+ +..+|+.+.. .+.++.+ +.+.++.+.|.+.-+|=
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 160 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGH 160 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 4555667777777777 7788985321 1222333 35777888888887773
No 142
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=50.41 E-value=33 Score=26.62 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=30.4
Q ss_pred ceEeeCc-ccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 130 KHIDLSE-ASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 130 r~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
-.||..+ .+.++++++++..- ++-.+|. ...+++++|+++|+.++-
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA----~FivSP~---~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGA----QFIVSPG---FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-----SEEEESS-----HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCC----CEEECCC---CCHHHHHHHHHcCCcccC
Confidence 3578766 67888888888642 2222333 246899999999998884
No 143
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.09 E-value=93 Score=24.97 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=55.5
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHhC
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCRELG 177 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~g 177 (208)
.++.++-.|-+ .+-++.+.++. -+.=-+.|=|-++...+.++++...++++|+.....-- ..-..+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 45556665533 23355555555 23323555556677788888888788999988765432 12347899999999
Q ss_pred CcEEEcccCccc
Q 040616 178 IGIVAYSLLGRG 189 (208)
Q Consensus 178 i~v~a~~pl~~G 189 (208)
+.+...+-+.++
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999876555443
No 144
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.91 E-value=56 Score=25.63 Aligned_cols=60 Identities=23% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCC---cceEeeCc-ccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 116 TIGELKRLVEEGK---IKHIDLSE-ASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 116 ~~~~l~~l~~~G~---ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
..+.+++++++-. =-.||..+ .+.++++++++..- |+-.+|.. ..+++++|+++|+.++-
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA----~FivsP~~---~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA----QFIVSPSF---NRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC----CEEECCCC---CHHHHHHHHHcCCCEEC
Confidence 3445555544321 12467655 56777777777632 11223322 35788888888877763
No 145
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=48.66 E-value=1.3e+02 Score=25.01 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEE
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTK----IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVV 154 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 154 (208)
.+.+++.+.+.+++.++|++=++..-.-++. ....+++++|++..+++.-. -++.++-..... .. +-
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g--~~ 202 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAG--VP 202 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCC--CC
Confidence 4567888999999999885544444332221 12345788888888876532 233332222111 22 22
Q ss_pred eeccCcCCCCccccHHHHHHHhCCcEEE---cccCcccccCCCCCcccchhhcC
Q 040616 155 RLEWSLRSRDVEEEIVPTCRELGIGIVA---YSLLGRGFLSSGPKLIHLSATKG 205 (208)
Q Consensus 155 q~~~~~~~~~~~~~~l~~~~~~gi~v~a---~~pl~~G~l~~~~~~~~~a~~~~ 205 (208)
-+++.|-.......+.+.++++|+.+.+ .+|++.+++.+-.++-++|++.|
T Consensus 203 fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAAplvlDLirl~~la~r~g 256 (295)
T PF07994_consen 203 FVNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPLVLDLIRLAKLALRRG 256 (295)
T ss_dssp EEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred eEeccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHHHHHHHHHHHHHHHcC
Confidence 2344444433234899999999999885 44666665554444445555544
No 146
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.55 E-value=1.1e+02 Score=25.90 Aligned_cols=81 Identities=7% Similarity=-0.047 Sum_probs=54.8
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHhC
Q 040616 100 DLYYQHRIDTKIPIEVTIGELKRLVEEGKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCRELG 177 (208)
Q Consensus 100 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~g 177 (208)
++.++..|-+. +-++.+.++++.--| -+.|=+.++..++..+++...++++|+..+..--- .-..+.+.|+.+|
T Consensus 213 ~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~g 288 (355)
T cd03321 213 GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAG 288 (355)
T ss_pred CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcC
Confidence 44555554322 235667777766443 35555668889999998888889999877765321 1237899999999
Q ss_pred CcEEEcc
Q 040616 178 IGIVAYS 184 (208)
Q Consensus 178 i~v~a~~ 184 (208)
+.++.++
T Consensus 289 i~~~~h~ 295 (355)
T cd03321 289 IPMSSHL 295 (355)
T ss_pred Ceecccc
Confidence 9987544
No 147
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=48.51 E-value=1.3e+02 Score=23.57 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHc---CCcceEeeCcccHHHHHHHhhcCCcc--EEee-c---------------c-----CcCCCCcc
Q 040616 113 IEVTIGELKRLVEE---GKIKHIDLSEASASTIRRAHTIHPIT--VVRL-E---------------W-----SLRSRDVE 166 (208)
Q Consensus 113 ~~~~~~~l~~l~~~---G~ir~iGvs~~~~~~l~~~~~~~~~~--~~q~-~---------------~-----~~~~~~~~ 166 (208)
.++.++.+.+..++ +....+=+++|+...+..+.+..|.. .... . + ++-.....
T Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (237)
T cd08583 115 IKKLYEYIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDSIRLDEIIAFCYENGIKAVTISKNYVN 194 (237)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEeccccccchHHHHHHHHHcCCcEEEechhhcC
Confidence 34445555444433 35556778889988877776653321 0000 0 0 01001123
Q ss_pred ccHHHHHHHhCCcEEEccc
Q 040616 167 EEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 167 ~~~l~~~~~~gi~v~a~~p 185 (208)
..+++.|+++|+.+.+|.+
T Consensus 195 ~~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 4788888888888888854
No 148
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=48.07 E-value=1.6e+02 Score=24.46 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-----------------EEEEeecceecCCCCccCCCChHH
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-----------------VKLTTKFGIRYEDGKYSYCGDPAY 82 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-----------------~~i~tK~~~~~~~~~~~~~~~~~~ 82 (208)
..+.++..++++.+.+.|++.|.-. | -|..+-. +.|+|-.. .
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~lt---G---GEPll~~~l~~li~~i~~~~gi~~v~itTNG~---------------l 100 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLT---G---GEPLLRKDLVELVARLAALPGIEDIALTTNGL---------------L 100 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C---ccccccCCHHHHHHHHHhcCCCCeEEEEeCch---------------h
Confidence 3467889999999999999877643 2 2333332 22222111 1
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCC---------CCCHHHHHHHHHHHHHcCCc----ceEeeCcccHHHHHHHhhc-
Q 040616 83 LRAACEASLKCLDVDCIDLYYQHRIDT---------KIPIEVTIGELKRLVEEGKI----KHIDLSEASASTIRRAHTI- 148 (208)
Q Consensus 83 i~~~~~~sL~~L~~d~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~~- 148 (208)
+.+ .-+.|.+.|++++- +-++..++ ...+++++++++.+++.|.- ..+-+.+.+.+++.++++.
T Consensus 101 l~~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~ 178 (334)
T TIGR02666 101 LAR-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFA 178 (334)
T ss_pred HHH-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHH
Confidence 122 23446666665543 33444432 12578899999999998863 2233345676776666554
Q ss_pred --CCccEEeeccCcCC
Q 040616 149 --HPITVVRLEWSLRS 162 (208)
Q Consensus 149 --~~~~~~q~~~~~~~ 162 (208)
.++.+.-++|.|+.
T Consensus 179 ~~~gv~~~~ie~mp~~ 194 (334)
T TIGR02666 179 KERGVTLRFIELMPLG 194 (334)
T ss_pred HhcCCeEEEEeccCCC
Confidence 44555445565543
No 149
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=48.02 E-value=1.7e+02 Score=24.83 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCC
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDT 109 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~ 109 (208)
..|..+.+-++...+++... -+-+|..+.
T Consensus 223 a~P~~v~~lv~~l~~~~~~~---~i~~H~Hnd 251 (347)
T PLN02746 223 GTPGTVVPMLEAVMAVVPVD---KLAVHFHDT 251 (347)
T ss_pred cCHHHHHHHHHHHHHhCCCC---eEEEEECCC
Confidence 45788888888877776421 245566543
No 150
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=47.99 E-value=1.5e+02 Score=23.94 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHcCCcceEeeCc----ccHHHHHHHhhc----CCccEEeeccCcCCCC--ccccHHHHHHHhCCcE
Q 040616 111 IPIEVTIGELKRLVEEGKIKHIDLSE----ASASTIRRAHTI----HPITVVRLEWSLRSRD--VEEEIVPTCRELGIGI 180 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~----~~~~~~q~~~~~~~~~--~~~~~l~~~~~~gi~v 180 (208)
.+.+.+.+..+++.+.| +..|.++. .+|+++.++++. .+..-+.+.+|.-+.. .-...+..+ +.|+..
T Consensus 140 ~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi-~aG~~~ 217 (268)
T cd07940 140 TDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAV-EAGARQ 217 (268)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHH-HhCCCE
Confidence 45666777778888887 67888886 467777766654 2210145566655543 111334444 579999
Q ss_pred EEcccCcccccCCCCCcccch
Q 040616 181 VAYSLLGRGFLSSGPKLIHLS 201 (208)
Q Consensus 181 ~a~~pl~~G~l~~~~~~~~~a 201 (208)
+--+..+-|.-.++....++.
T Consensus 218 iD~s~~GlG~~aGN~~tE~lv 238 (268)
T cd07940 218 VECTINGIGERAGNAALEEVV 238 (268)
T ss_pred EEEEeeccccccccccHHHHH
Confidence 977777767666666554443
No 151
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.89 E-value=74 Score=20.92 Aligned_cols=61 Identities=10% Similarity=-0.042 Sum_probs=35.7
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEeeCcc-cHHHHHHHhhcCCccEEee
Q 040616 93 CLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG-KIKHIDLSEA-SASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 93 ~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 156 (208)
.+.....|++++....+.....+++ +.+++.+ .++-|.+++. +.....++++..-.+++.-
T Consensus 38 ~~~~~~~d~iiid~~~~~~~~~~~~---~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 38 LLKKHPPDLIIIDLELPDGDGLELL---EQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp HHHHSTESEEEEESSSSSSBHHHHH---HHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEES
T ss_pred HhcccCceEEEEEeeeccccccccc---cccccccccccEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 3333449999998765554444444 4555554 7777777753 4566666666543344433
No 152
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=47.79 E-value=1e+02 Score=25.67 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE------eeCcccHHHHHHHhhc
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHI------DLSEASASTIRRAHTI 148 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~ 148 (208)
+..+.+.+-+.|++.|.. ..+.+|...+....++++++++.+++.|..-.+ |+ |.+.+.+.++.+.
T Consensus 182 p~rit~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~ 253 (321)
T TIGR03822 182 PARVTPALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRA 253 (321)
T ss_pred hhhcCHHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHH
Confidence 344555555667777732 357888765544468899999999999963211 22 5677766666543
No 153
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=47.64 E-value=63 Score=23.39 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
..+.+.+...+++..+.- -+.-++=..|...++..+.+.|+.+++.| +..|++.+
T Consensus 80 ~v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 345555555555544322 22323334577789999999999999999 45688765
No 154
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=47.47 E-value=75 Score=26.82 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=51.7
Q ss_pred HHHHHHHHHHc--CCc-ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHHhCCcEEEcc
Q 040616 116 TIGELKRLVEE--GKI-KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 116 ~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~~gi~v~a~~ 184 (208)
-++.+.++++. -.| -+.|=|-++...+.++++..-.+++|+...-.-- ..-..+.+.|+.+|+.+..++
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 46777788876 322 3556677899999999998889999998776432 123489999999999998764
No 155
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=47.32 E-value=41 Score=30.29 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHH-cCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCccccc
Q 040616 113 IEVTIGELKRLVE-EGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFL 191 (208)
Q Consensus 113 ~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l 191 (208)
.-+++++|..+++ .++|--||..|.. ..+..+.+....++.+..|+-... -...+..+++.|+.++.-..+
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~~i~~~~~~~~~e--~~~~~~~l~~~G~~~viG~~~----- 154 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNLDIVQRSYVTEED--ARSCVNDLRARGIGAVVGAGL----- 154 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCceEEEEecCHHH--HHHHHHHHHHCCCCEEECChH-----
Confidence 4568888888876 5688888887754 233333333445566655553333 447899999999998873322
Q ss_pred CCCCCcccchhhcCC
Q 040616 192 SSGPKLIHLSATKGC 206 (208)
Q Consensus 192 ~~~~~~~~~a~~~~~ 206 (208)
..++|+++|+
T Consensus 155 -----~~~~A~~~gl 164 (526)
T TIGR02329 155 -----ITDLAEQAGL 164 (526)
T ss_pred -----HHHHHHHcCC
Confidence 2366666665
No 156
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=47.28 E-value=67 Score=25.61 Aligned_cols=102 Identities=20% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc----CCcceEeeCcc--cHHHHHHHhhcCC
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE----GKIKHIDLSEA--SASTIRRAHTIHP 150 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvs~~--~~~~l~~~~~~~~ 150 (208)
+.+++.+-.-+.+.-+.-. ..+ +.+..|-+....++..++|.+|++. |.=-.|=.-.| +.+.++...+...
T Consensus 85 ~~d~~~~adYl~~l~~aA~--P~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A 161 (248)
T PF07476_consen 85 DNDPDRMADYLAELEEAAA--PFK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKA 161 (248)
T ss_dssp TT-HHHHHHHHHHHHHHHT--TS--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcC--CCe-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCC
Confidence 4566777666666555553 233 4456675555667777777666643 33223333334 5688999988888
Q ss_pred ccEEeeccCcCCCCc--cccHHHHHHHhCCcEEE
Q 040616 151 ITVVRLEWSLRSRDV--EEEIVPTCRELGIGIVA 182 (208)
Q Consensus 151 ~~~~q~~~~~~~~~~--~~~~l~~~~~~gi~v~a 182 (208)
.+.+|+.-- -.... .-+-+-+|+++|++...
T Consensus 162 ~dmVQIKtP-DLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 162 ADMVQIKTP-DLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp SSEEEE-GG-GGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred cCEEEecCC-CccchhhHHHHHHHHHhcCCceee
Confidence 899998421 11111 22678899999998764
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.21 E-value=1.4e+02 Score=23.39 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeEeCC-CCCCCCchhhhcce-------EEEEeecceecCCCCccCCCChHHHHHHHHHHHH
Q 040616 21 KPESCMIALIHHAIDSGITVLDTS-NVYGPHTNEILLAR-------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLK 92 (208)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~~e~~~g~-------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 92 (208)
.+.++..++++...+.||..|+.. +..+. ...+.+.+ ..+++.+. ...+.++.+++.. .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR-----------ANEEDIERAVEAA-K 77 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE-----------SCHHHHHHHHHHH-H
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee-----------ehHHHHHHHHHhh-H
Confidence 366788899999889999999998 44431 11122222 22222221 2355566666543 4
Q ss_pred HcCCCcccEEEeecCC-----CCCC----HHHHHHHHHHHHHcCCcceEeeCc---ccHHHHHHHhhc---CCccEEeec
Q 040616 93 CLDVDCIDLYYQHRID-----TKIP----IEVTIGELKRLVEEGKIKHIDLSE---ASASTIRRAHTI---HPITVVRLE 157 (208)
Q Consensus 93 ~L~~d~iDl~~lh~~~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~q~~ 157 (208)
..+.+.+.++.--++. .... ++.+.+.++..++.|.--.+++-. ++++.+.++.+. ..++.+.+.
T Consensus 78 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp HTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred hccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 6677776665432210 0011 334455666666777777777643 445554444433 234544442
Q ss_pred --cCcCCCCccccHHHHHHHh----CCcEEEcccCc
Q 040616 158 --WSLRSRDVEEEIVPTCREL----GIGIVAYSLLG 187 (208)
Q Consensus 158 --~~~~~~~~~~~~l~~~~~~----gi~v~a~~pl~ 187 (208)
+..+.+..-.+++...+++ .+++.++.-++
T Consensus 158 Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 158 DTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp ETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred CccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 2223232112455555542 24444444443
No 158
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.11 E-value=1.8e+02 Score=24.74 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeCcccHHHHHHHhhcCCccEEeeccCcCC
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLSEASASTIRRAHTIHPITVVRLEWSLRS 162 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 162 (208)
+..+-+.|.++|+++|++-+.-.- +.-++.+..+.+.+. .+..+++..+.+.++.+.+. ..+.+.+....-+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG~p~~~------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd 97 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVGIPAMG------EEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC------HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEEEEccCH
Q ss_pred CCccc--------------cHHHHHHHhCCcEEEcccCcc
Q 040616 163 RDVEE--------------EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 163 ~~~~~--------------~~l~~~~~~gi~v~a~~pl~~ 188 (208)
..... +.+++++++|+.+....+.+.
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~ 137 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS 137 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC
No 159
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=46.89 E-value=57 Score=24.35 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCC---chhhhcce--EEEEee-cceecCCCCccCCCChHHHHHHHHHHHHHcC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPH---TNEILLAR--VKLTTK-FGIRYEDGKYSYCGDPAYLRAACEASLKCLD 95 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~~e~~~g~--~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 95 (208)
+++...-.+++|-+.||.+|=.|+.+|.- ..|-.-|. +++.|. .+... .+...+.+.+++-|+..|
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e--------~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEE--------KGTQEMDEEVRKELKERG 83 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeeccccc--------CCceecCHHHHHHHHHcC
Confidence 44556677788888999999999998831 12333333 444444 44322 233456677888888888
Q ss_pred CC
Q 040616 96 VD 97 (208)
Q Consensus 96 ~d 97 (208)
.+
T Consensus 84 a~ 85 (186)
T COG1751 84 AK 85 (186)
T ss_pred ce
Confidence 53
No 160
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=46.71 E-value=1.1e+02 Score=22.03 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC----CcccEEEeecCCC-CCCHHHHHHHHHHHHH
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV----DCIDLYYQHRIDT-KIPIEVTIGELKRLVE 125 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~ 125 (208)
..+| +.|+-|++. ......+++.+.++++.+.. ...|++++..+.. +.++.++-+.|..+.+
T Consensus 47 ~RvG-~~VSKKvG~---------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVG-FTVTKKNGN---------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEE-EEEecccCc---------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4555 788888874 46788888888888887643 5689999998853 3456666666665544
No 161
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.70 E-value=73 Score=25.53 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHH-HHHcCCcceEeeCcc-----cHHHHHHHhhc---CCccEE
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKR-LVEEGKIKHIDLSEA-----SASTIRRAHTI---HPITVV 154 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~-l~~~G~ir~iGvs~~-----~~~~l~~~~~~---~~~~~~ 154 (208)
.+.++..|+-.+ +|||.+=+-|-......++.++...+ +++-|.--+.| -++ ....+++.++. ..|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 456778888888 89999999886554444555555544 44556655666 211 11223333332 557777
Q ss_pred eeccCcCCCCccc--cHHHHHHHhCCcEEE
Q 040616 155 RLEWSLRSRDVEE--EIVPTCRELGIGIVA 182 (208)
Q Consensus 155 q~~~~~~~~~~~~--~~l~~~~~~gi~v~a 182 (208)
++.-..+.-+.+. .+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 7766655543222 678888888877663
No 162
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=46.51 E-value=81 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=24.7
Q ss_pred eeccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 155 RLEWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 155 q~~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
=-+||++++....++.+..++.|+.|+..
T Consensus 190 GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 190 GRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred cCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 33899999887789999999999998864
No 163
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=46.50 E-value=97 Score=21.49 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=44.0
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC---CcccEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV---DCIDLYYQHRIDT-KIPIEVTIGELKRLVEE 126 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 126 (208)
..+| +.|+-|++. ...+..+++.+.+.+..... ...|++++-.+.. ..+..++-+.|..+.+.
T Consensus 38 ~R~G-isVsKKvgk---------AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVG-ISVSKKVGN---------AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEE-EEEecccCc---------hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444 778888774 45688888888888876632 4579999998754 35677777777766654
No 164
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=46.30 E-value=1.3e+02 Score=27.30 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHH-cCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 113 IEVTIGELKRLVE-EGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 113 ~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
.-+++++|..+++ .++|--||..|.. ..+..+.+....++.|..|+--.. -...+..+++.|+.++.-.
T Consensus 93 ~~Dil~al~~a~~~~~~iavv~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~e--~~~~v~~lk~~G~~~vvG~ 162 (538)
T PRK15424 93 GFDVMQALARARKLTSSIGVVTYQETI-PALVAFQKTFNLRIEQRSYVTEED--ARGQINELKANGIEAVVGA 162 (538)
T ss_pred HhHHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCceEEEEecCHHH--HHHHHHHHHHCCCCEEEcC
Confidence 3568888887776 4677777777754 334444444455666666654333 4578999999999998743
No 165
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=46.22 E-value=40 Score=27.74 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred HcCCCcccEEE--eecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC---ccc
Q 040616 93 CLDVDCIDLYY--QHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD---VEE 167 (208)
Q Consensus 93 ~L~~d~iDl~~--lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~---~~~ 167 (208)
+-+...+|+++ .|.- ......++.|+.++.+ -+||.|-++-.+--+-+..|+ ++||..++ ...
T Consensus 190 e~~~G~~dvvlsY~ry~---l~d~tLl~~~~~~~sk----~vgVi~AsalsmgLLt~~gp~-----~wHPaS~Elk~~a~ 257 (342)
T KOG1576|consen 190 ERGKGRLDVVLSYCRYT---LNDNTLLRYLKRLKSK----GVGVINASALSMGLLTNQGPP-----PWHPASDELKEAAK 257 (342)
T ss_pred hcCCCceeeehhhhhhc---cccHHHHHHHHHHHhc----CceEEehhhHHHHHhhcCCCC-----CCCCCCHHHHHHHH
Confidence 44567788887 4432 2234567778888755 569999887777777666775 56777764 223
Q ss_pred cHHHHHHHhCCcE
Q 040616 168 EIVPTCRELGIGI 180 (208)
Q Consensus 168 ~~l~~~~~~gi~v 180 (208)
.-.++|+++|+.+
T Consensus 258 ~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 258 AAAEYCQSRNVEL 270 (342)
T ss_pred HHHHHHHHcCccH
Confidence 5678899998764
No 166
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=46.15 E-value=35 Score=23.82 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYG 48 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 48 (208)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 566788889999999999999999985
No 167
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=46.13 E-value=15 Score=35.40 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHH-HHHHHHcCCcceEeeCcc--cHHHHHHHhhc--------
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGE-LKRLVEEGKIKHIDLSEA--SASTIRRAHTI-------- 148 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~~--~~~~l~~~~~~-------- 148 (208)
...=|+++.......+-.++|||-|-.|+.+..++.+++. +++.-.+=..++|-||.. ..+.++.+.+.
T Consensus 6 ~~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefhGVMRFYFQDag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrML 85 (1629)
T KOG1892|consen 6 RDEEREKLADIIQQWNANRLDLFELSQPTEDLEFHGVMRFYFQDAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRML 85 (1629)
T ss_pred hhhHHHHHHHHHHHhcccccceeeccCCCccceeeeeEEEEeecccchhhhheeEecccccHHHHHHHHHHHhCcchhhh
Confidence 3445788889999999999999999999877666666542 223222223367777652 22334444442
Q ss_pred ---------------------CCccEEeeccCcCCCC
Q 040616 149 ---------------------HPITVVRLEWSLRSRD 164 (208)
Q Consensus 149 ---------------------~~~~~~q~~~~~~~~~ 164 (208)
.+|-++|+++|.-+++
T Consensus 86 S~p~YsLyEVH~nGERrL~~dEKPLvVQLnWhkDDRE 122 (1629)
T KOG1892|consen 86 SSPKYSLYEVHVNGERRLDIDEKPLVVQLNWHKDDRE 122 (1629)
T ss_pred cCCCceeeeeecCcccccCcccCceEEEecccccccc
Confidence 4667788888777763
No 168
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=46.13 E-value=1.4e+02 Score=24.75 Aligned_cols=153 Identities=16% Similarity=0.060 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHH-CCCCe-----EeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHc
Q 040616 21 KPESCMIALIHHAID-SGITV-----LDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCL 94 (208)
Q Consensus 21 ~~~~~~~~~l~~A~~-~Gi~~-----~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 94 (208)
.+.+++.++|..|++ +|+.. +|+|..-- -+..-|+..+..|... .......+++++.+-..+.+++.
T Consensus 77 ~~~eeaL~ll~~Ai~~aGy~~~v~ialD~AAsef---yd~~~gkY~~~~~~~~----~~~~~~~s~delid~y~~li~~Y 149 (295)
T PF00113_consen 77 DDNEEALDLLMEAIKEAGYEPDVAIALDVAASEF---YDEEDGKYDLEFKSKE----KDPSRYKSSDELIDYYKDLIKKY 149 (295)
T ss_dssp SSHHHHHHHHHHHHHHTT-TTTBEEEEE--GGGG---EETETTEEETTTTSSS----STGGGEEEHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHHHHccccceeeeeccccHHHh---hhccCCeEEEeecccc----cccccccCHHHHHHHHHHHHHhc
Confidence 356789999999986 68763 45553210 0000122222222210 00112345666666666665554
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEe--eCcccHHHHHHHhhcCCccEEeeccCcCCCCcc-ccHHH
Q 040616 95 DVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHID--LSEASASTIRRAHTIHPITVVRLEWSLRSRDVE-EEIVP 171 (208)
Q Consensus 95 ~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~~l~ 171 (208)
. ++.+-+|-.+.+ .+.|..|.+-... ++--+| +..-++.++.+.++......+-+..|-.-.--+ -+.++
T Consensus 150 ----P-IvsIEDpf~edD-~e~w~~lt~~~g~-~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 150 ----P-IVSIEDPFDEDD-WEGWAKLTKRLGD-KIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp ------EEEEESSS-TT--HHHHHHHHHHHTT-TSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred ----C-eEEEEccccccc-hHHHHHHHHhhhc-ceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 4 888988866554 4567766655543 576777 334578999999887655555555554333112 27788
Q ss_pred HHHHhCCcEEEcccCc
Q 040616 172 TCRELGIGIVAYSLLG 187 (208)
Q Consensus 172 ~~~~~gi~v~a~~pl~ 187 (208)
.++++|..++....-+
T Consensus 223 ~a~~~g~~~vvS~rsg 238 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSG 238 (295)
T ss_dssp HHHHTT-EEEEE--SS
T ss_pred HHHHCCceeeccCCCC
Confidence 8899998888755433
No 169
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.83 E-value=1.9e+02 Score=24.53 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=55.6
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHH-HHcCC---cceEeeC--cccHHHHHHHhhc---CCccEEeeccCc
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRL-VEEGK---IKHIDLS--EASASTIRRAHTI---HPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l-~~~G~---ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~ 160 (208)
++-||.++++ .+++++.+++.+. .+.|+ |+++=+. |.+.+.++++.+. .+..++-++||+
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~ 290 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNE 290 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCC
Confidence 6778988653 2456677666553 34443 4555665 4456666666554 445677789998
Q ss_pred CCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
+... +.. .+.+..+++|+.+......+.
T Consensus 291 ~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~ 326 (342)
T PRK14454 291 VKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGS 326 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 6432 111 466777888999998876654
No 170
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=45.68 E-value=1.1e+02 Score=21.73 Aligned_cols=63 Identities=2% Similarity=-0.136 Sum_probs=44.3
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCC---cccEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVD---CIDLYYQHRIDT-KIPIEVTIGELKRLVEE 126 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d---~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 126 (208)
..+| +.|+-|++. ....+.+++.+.++.+.+..+ -.|++++-.+.. ..+..++.+.|+.+.+.
T Consensus 48 ~R~G-~~VsKKvG~---------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFG-LVVSKAVGN---------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEE-EEEeeeccc---------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4455 888888885 356778888888888776543 479999998754 34677777777666543
No 171
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=45.56 E-value=1.2e+02 Score=26.58 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee-cCC----------CCC-CHHH---HH-HHHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH-RID----------TKI-PIEV---TI-GELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+++.++..+ .++.+++.++.+- .|. ... +.++ .+ .+.+.|.+.|.. .+++|||..
T Consensus 214 gqt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far 290 (453)
T PRK09249 214 KQTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFAL 290 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 466777777777666 4888888888653 111 001 1122 22 344556667764 488888764
No 172
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=45.52 E-value=87 Score=27.05 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCc---ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEc
Q 040616 116 TIGELKRLVEEGKI---KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 116 ~~~~l~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~ 183 (208)
-++.+.+|++.-.+ -+-|-+.++...+..+++....+++|....-.--- .-..+...|+.+|+.+..+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46777778776442 22366778889999999988899999987765321 1348999999999998765
No 173
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.42 E-value=1.9e+02 Score=24.41 Aligned_cols=103 Identities=21% Similarity=0.125 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEe--------ecCCCCCCHHHHHHHHHHHHHcCCcceEeeC---cccHHHHHH
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQ--------HRIDTKIPIEVTIGELKRLVEEGKIKHIDLS---EASASTIRR 144 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~l--------h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~ 144 (208)
..++.+.+.+ +-+.|.+.|+++|.+-.. +.-.+..+-.+.++++.+..+. .+...+. ..+.+.++.
T Consensus 19 ~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKR--AKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCC--CEEEEEeccCccCHHHHHH
Confidence 3456555544 455688999999998521 1101112222333333333222 3333232 135667777
Q ss_pred HhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 145 AHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 145 ~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
+.+. .++++.+-.+.-.-..-.+.+++++++|..+..
T Consensus 96 a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 96 AYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 7665 345555544433322344789999999987764
No 174
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=45.35 E-value=1.4e+02 Score=23.03 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=38.7
Q ss_pred HHHHcCCc-ceEeeCcccHHHHHHHhhcCC-ccEEeecc------------------CcCCCCccccHHHHHHHhCCcEE
Q 040616 122 RLVEEGKI-KHIDLSEASASTIRRAHTIHP-ITVVRLEW------------------SLRSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 122 ~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~-~~~~q~~~------------------~~~~~~~~~~~l~~~~~~gi~v~ 181 (208)
.+++-+.. ..+=+++|+.+.+..+.+..| +.+..+.+ ++-......++++.++++|+.|.
T Consensus 124 ~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~ 203 (229)
T cd08562 124 ALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYRGLTEEQVKALKDAGYKLL 203 (229)
T ss_pred HHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChhhCCHHHHHHHHHCCCEEE
Confidence 33455553 777888999988877766422 11111100 01001123479999999999999
Q ss_pred EcccC
Q 040616 182 AYSLL 186 (208)
Q Consensus 182 a~~pl 186 (208)
+|.+=
T Consensus 204 ~wTvn 208 (229)
T cd08562 204 VYTVN 208 (229)
T ss_pred EEeCC
Confidence 99653
No 175
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=44.77 E-value=93 Score=23.65 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCCeEeCCCCCCCCchhhhcce---------------EEEEeecceec-CCCCc--cCCCChHHHHHHHHHHHHHcCCC
Q 040616 36 SGITVLDTSNVYGPHTNEILLAR---------------VKLTTKFGIRY-EDGKY--SYCGDPAYLRAACEASLKCLDVD 97 (208)
Q Consensus 36 ~Gi~~~DtA~~Yg~g~~e~~~g~---------------~~i~tK~~~~~-~~~~~--~~~~~~~~i~~~~~~sL~~L~~d 97 (208)
.+|-++||-..-..--++...|+ +.|.++--..| .+|-. +...++..+.+-|++.|++-+..
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~ 158 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIP 158 (187)
T ss_pred CceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCc
Confidence 58999998664211113333442 55544433222 33332 23457888999999999999765
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 040616 98 CIDLYYQHRIDTKIPIEVTIGELKRLVEEG 127 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 127 (208)
| +.+..++....+....++.+++..++
T Consensus 159 ~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 159 F---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred E---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 4 45566665566777888888888776
No 176
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=44.68 E-value=1.2e+02 Score=21.92 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=38.0
Q ss_pred hcceEEEEee-cceecCCCCccCCCChHHHHHHHHHHHHH----cCC----------CcccEEEeecC--CCCCCHHHHH
Q 040616 55 LLARVKLTTK-FGIRYEDGKYSYCGDPAYLRAACEASLKC----LDV----------DCIDLYYQHRI--DTKIPIEVTI 117 (208)
Q Consensus 55 ~~g~~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~sL~~----L~~----------d~iDl~~lh~~--~~~~~~~~~~ 117 (208)
.+| +.|+-| ++. ...++.+++.++++.+. |.. ..+|++++..+ ....+.+++-
T Consensus 51 RvG-~sVsKK~~g~---------AV~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~ 120 (133)
T PRK01903 51 SVL-FSVSKKRVPR---------AVKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFR 120 (133)
T ss_pred eEE-EEEecccCCc---------hhhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHH
Confidence 344 666666 553 35577777777777755 433 24799999987 3334567766
Q ss_pred HHHHHHHH
Q 040616 118 GELKRLVE 125 (208)
Q Consensus 118 ~~l~~l~~ 125 (208)
+.|..+.+
T Consensus 121 ~~l~~ll~ 128 (133)
T PRK01903 121 REMRKLLQ 128 (133)
T ss_pred HHHHHHHH
Confidence 66666544
No 177
>PRK11024 colicin uptake protein TolR; Provisional
Probab=44.65 E-value=68 Score=23.20 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
.+.+.+...+...++.- -|...+=..|.+.++..+.+.|+.+++.|. ..+++.+
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~t 138 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLMT 138 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 34555555555544432 233334446778899999999999999984 4466643
No 178
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=44.62 E-value=99 Score=24.08 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecC-C-CCccCCCChHHHHH---------HHHHHH
Q 040616 23 ESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYE-D-GKYSYCGDPAYLRA---------ACEASL 91 (208)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~-~-~~~~~~~~~~~i~~---------~~~~sL 91 (208)
+++....++.|++.|...|.+-=.- ..=|.+++.-=-...+. + .....+.+.+++++ .+++.|
T Consensus 13 pENTl~af~~A~~~Gad~iE~DV~l------T~Dg~~Vv~HD~~l~R~t~~~g~v~~~t~~eL~~l~~~g~~iPtL~evl 86 (226)
T cd08568 13 PENTLEAFKKAIEYGADGVELDVWL------TKDGKLVVLHDENLKRVGGVDLKVKELTYKELKKLHPGGELIPTLEEVF 86 (226)
T ss_pred CcchHHHHHHHHHcCcCEEEEEEEE------cCCCCEEEECCCcccccCCCCceeecCCHHHHhhCCCCCCcCCCHHHHH
Confidence 3667888999999999987521110 00111111100000000 0 00112334444433 466777
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCC---ccEE--------------
Q 040616 92 KCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHP---ITVV-------------- 154 (208)
Q Consensus 92 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~---~~~~-------------- 154 (208)
+.+.-. . .+.+---++ .. .-..++.+++.+....+=+++|+++.+..+.+..| ..+.
T Consensus 87 ~~~~~~-~-~l~iEiK~~--~~--~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~ 160 (226)
T cd08568 87 RALPND-A-IINVEIKDI--DA--VEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELH 160 (226)
T ss_pred HhcCCC-c-EEEEEECCc--cH--HHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHH
Confidence 666421 1 133322111 11 11233344455777788899999988888776522 1111
Q ss_pred --------eeccCcCC---CCccccHHHHHHHhCCcEEEccc
Q 040616 155 --------RLEWSLRS---RDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 155 --------q~~~~~~~---~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
...+.... .....++++.++++|+.+.+|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~~WTv 202 (226)
T cd08568 161 EKLKLYSLHVPIDAIGYIGFEKFVELLRLLRKLGLKIVLWTV 202 (226)
T ss_pred HhcCCcEeccchhhhccccccccHHHHHHHHHCCCEEEEEcC
Confidence 01100000 00114788999999999999965
No 179
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=44.45 E-value=96 Score=27.35 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCcceEeeCcccHHHHHHHhhc-------CC-ccEEeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 118 GELKRLVEEGKIKHIDLSEASASTIRRAHTI-------HP-ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 118 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
+....+-+.|-+..+|....+++++++.++. .+ +-+|-+ .++-++..+..+++.|.++++.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 3344566889999999999999988877654 24 555543 233233234578999999999988654
No 180
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=43.78 E-value=1.7e+02 Score=23.55 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcC-CcceEeeCcccH------HHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEE-Ecc
Q 040616 113 IEVTIGELKRLVEEG-KIKHIDLSEASA------STIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIV-AYS 184 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G-~ir~iGvs~~~~------~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~-a~~ 184 (208)
++++++.+++++++. .+.-+.++=+|+ +...+......++.+-++.-|... ..++++.|+++|+..+ ..+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEEC
Confidence 345677777777652 233333333333 443333333444555554444432 3478888999987754 444
Q ss_pred c
Q 040616 185 L 185 (208)
Q Consensus 185 p 185 (208)
|
T Consensus 149 P 149 (256)
T TIGR00262 149 P 149 (256)
T ss_pred C
Confidence 4
No 181
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=43.62 E-value=1.5e+02 Score=22.94 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHcCCCcccEEEee-cCCC-CCCHHH----HHHHHHHHHH--cCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC
Q 040616 92 KCLDVDCIDLYYQH-RIDT-KIPIEV----TIGELKRLVE--EGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR 163 (208)
Q Consensus 92 ~~L~~d~iDl~~lh-~~~~-~~~~~~----~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 163 (208)
..-|.++||+=.-- +|.. ..+.++ +...++.+++ .+. -|.+-+++++.++++++. ..+++-. -+-+..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind-~~~~~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIIND-ISGFED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEE-TTTTSS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEe-cccccc
Confidence 34588999986432 2221 122233 3445555554 233 566778999999999988 3333222 222222
Q ss_pred CccccHHHHHHHhCCcEEEcccC
Q 040616 164 DVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 164 ~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
..++++.++++|..++++.--
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 458999999999999987666
No 182
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.34 E-value=2e+02 Score=24.26 Aligned_cols=88 Identities=8% Similarity=0.055 Sum_probs=55.8
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCC---cceEeeC--cccHHHHHHHhhc---CCccEEeeccCcC
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEEGK---IKHIDLS--EASASTIRRAHTI---HPITVVRLEWSLR 161 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~~ 161 (208)
.+-||.++++ .+++++.+++.++.+.++ ++++=+. |.+.++++++.+. .+..++-++||+.
T Consensus 207 aiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~ 286 (336)
T PRK14470 207 CISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDA 286 (336)
T ss_pred EEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCC
Confidence 3678887442 357888899988887643 2333333 4456666555544 5668999999985
Q ss_pred CCC----ccc---cHHHHH--HHhCCcEEEcccCcc
Q 040616 162 SRD----VEE---EIVPTC--RELGIGIVAYSLLGR 188 (208)
Q Consensus 162 ~~~----~~~---~~l~~~--~~~gi~v~a~~pl~~ 188 (208)
... .++ .+.+.. +++|+.+......|.
T Consensus 287 ~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 287 TGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 432 222 345555 366899888877765
No 183
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=43.15 E-value=2e+02 Score=24.07 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCcceEeeCc----ccHHH----HHHHhhcCCc-cEEeeccCcCC-C-CccccHHHHHHHhCCcEEEcc
Q 040616 116 TIGELKRLVEEGKIKHIDLSE----ASAST----IRRAHTIHPI-TVVRLEWSLRS-R-DVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir~iGvs~----~~~~~----l~~~~~~~~~-~~~q~~~~~~~-~-~~~~~~l~~~~~~gi~v~a~~ 184 (208)
..+.++.+..-..++.+|+.+ ..+.. +.+.++.... .+.++.+|=.. - ....+-++.+++.|+.+...+
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qt 240 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQS 240 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecc
Confidence 455666666767777777753 33322 2223333333 33345665221 1 122367888999999999999
Q ss_pred cCcccccC
Q 040616 185 LLGRGFLS 192 (208)
Q Consensus 185 pl~~G~l~ 192 (208)
++..|.-.
T Consensus 241 vllkgiND 248 (321)
T TIGR03821 241 VLLRGVND 248 (321)
T ss_pred eeeCCCCC
Confidence 99887443
No 184
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=43.10 E-value=54 Score=28.28 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcC-CcceEeeCc---ccHHHHHHHhhcC-CccEE---eeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 114 EVTIGELKRLVEEG-KIKHIDLSE---ASASTIRRAHTIH-PITVV---RLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 114 ~~~~~~l~~l~~~G-~ir~iGvs~---~~~~~l~~~~~~~-~~~~~---q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
..+++.+..|.++| .|.++.|-+ .+.++++++++.. ....+ ..+.....+ -.++-+.|+++|+.+..=..
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp--I~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQP--IAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeeccc--HHHHHHHHHHcCCeEEEehh
Confidence 35778888887778 788888875 4678888888752 22222 223333333 56899999999988887666
Q ss_pred Ccccc
Q 040616 186 LGRGF 190 (208)
Q Consensus 186 l~~G~ 190 (208)
-+-|.
T Consensus 180 Qa~Gk 184 (386)
T COG1104 180 QAVGK 184 (386)
T ss_pred hhcCc
Confidence 66554
No 185
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.08 E-value=2.1e+02 Score=24.26 Aligned_cols=115 Identities=14% Similarity=0.011 Sum_probs=68.0
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCcc-cEEEeecCCCCCCHHHHHHHHHHHHH-cCC---cceEeeCc--ccHHHHHHHhh
Q 040616 75 SYCGDPAYLRAACEASLKCLDVDCI-DLYYQHRIDTKIPIEVTIGELKRLVE-EGK---IKHIDLSE--ASASTIRRAHT 147 (208)
Q Consensus 75 ~~~~~~~~i~~~~~~sL~~L~~d~i-Dl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~--~~~~~l~~~~~ 147 (208)
..+.+.++|.+++......++. .+ -++++--=+|....+.+.+++..+++ .|. -|++-||+ +.+ .+.++.+
T Consensus 126 ~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p-~i~~l~~ 203 (342)
T PRK14454 126 VRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVP-KIYELAD 203 (342)
T ss_pred cccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChh-HHHHHHh
Confidence 3578999999999988776652 23 34555544555667889999999997 576 35677765 444 3566655
Q ss_pred cCCccEEeeccCcCCCC------------ccccHH----HHHHHhCCcEEEcccCccccc
Q 040616 148 IHPITVVRLEWSLRSRD------------VEEEIV----PTCRELGIGIVAYSLLGRGFL 191 (208)
Q Consensus 148 ~~~~~~~q~~~~~~~~~------------~~~~~l----~~~~~~gi~v~a~~pl~~G~l 191 (208)
.....-+.+.++-.+.. +-++++ ++..+.+-.++-.-|+-.|.-
T Consensus 204 ~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvN 263 (342)
T PRK14454 204 ENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVN 263 (342)
T ss_pred hcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCC
Confidence 43222234444443321 111333 233455666666666666643
No 186
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=42.95 E-value=1.5e+02 Score=22.67 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHcCCcceEeeCcccH--HHHHHHhhcCCccEEeec
Q 040616 81 AYLRAACEASLKCLDVDCIDLYYQHR-IDTKIPIEVTIGELKRLVEEGKIKHIDLSEASA--STIRRAHTIHPITVVRLE 157 (208)
Q Consensus 81 ~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~ 157 (208)
......+...++..+...-.+++--. ...........+.+..+++.|- .+++.++.. ..+.. +...+|+++-+.
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~-l~~~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSY-LKRLPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHH-HHhCCCCEEEEC
Confidence 44567777788887766433333222 2222334557889999999998 577776543 23333 333457777776
Q ss_pred cCcCCCC--------ccccHHHHHHHhCCcEEEcc
Q 040616 158 WSLRSRD--------VEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 158 ~~~~~~~--------~~~~~l~~~~~~gi~v~a~~ 184 (208)
.+....- .-..++..|+..|+.+++-.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 5544331 12368899999999998754
No 187
>PTZ00413 lipoate synthase; Provisional
Probab=42.93 E-value=2.3e+02 Score=24.66 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHc---CCcc----eEeeCcccHHHHHHHhhc---CCccEEee-ccC-c------CCCC----cccc
Q 040616 111 IPIEVTIGELKRLVEE---GKIK----HIDLSEASASTIRRAHTI---HPITVVRL-EWS-L------RSRD----VEEE 168 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~---G~ir----~iGvs~~~~~~l~~~~~~---~~~~~~q~-~~~-~------~~~~----~~~~ 168 (208)
..+++.|+.|...++. |..- -+|+.. +.+++.+++.. ..++++.+ +|= | ..+. .-+.
T Consensus 275 atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~ 353 (398)
T PTZ00413 275 ASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEM 353 (398)
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHH
Confidence 3578889999988875 4322 144444 33444444332 34444443 221 1 1111 1225
Q ss_pred HHHHHHHhCCcEEEcccCccc
Q 040616 169 IVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 169 ~l~~~~~~gi~v~a~~pl~~G 189 (208)
+-+.+.+.|...++.+||-.-
T Consensus 354 ~~~~a~~~Gf~~v~sgPlVRS 374 (398)
T PTZ00413 354 WEEEAMKMGFLYCASGPLVRS 374 (398)
T ss_pred HHHHHHHcCCceEEecCcccc
Confidence 777888889999999998753
No 188
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=42.26 E-value=2.1e+02 Score=24.08 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHcCCCcccEEEeec-CCC-CCCHHHHHHHHHHHHHcCCcce-EeeCcc---cHHHHHHHhhcCC---ccEEeeccCcC
Q 040616 91 LKCLDVDCIDLYYQHR-IDT-KIPIEVTIGELKRLVEEGKIKH-IDLSEA---SASTIRRAHTIHP---ITVVRLEWSLR 161 (208)
Q Consensus 91 L~~L~~d~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~---~~~~q~~~~~~ 161 (208)
-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|.. +++.++++++..+ +-++-+.
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat---- 160 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE---- 160 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC----
Confidence 3577888888765332 321 2233444444444444333322 555532 6888998888632 4333332
Q ss_pred CCCccccHHHHHHHhCCcEEEcccCc
Q 040616 162 SRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 162 ~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
...-+.+.+.|+++|..+++.+|..
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 2113479999999999999998765
No 189
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=42.04 E-value=2.3e+02 Score=24.56 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEee--CcccHHHHHHHhhcCCccE
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG--KIKHIDL--SEASASTIRRAHTIHPITV 153 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 153 (208)
.++++..+-+...++. .+++++-.|-+..+ |+.+.+|.+.- .+.-+|= ..+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555555555554444 45778888755443 55566666652 3433231 2247899999999888899
Q ss_pred EeeccCcCCCC-ccccHHHHHHHhCCcEEE
Q 040616 154 VRLEWSLRSRD-VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 154 ~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a 182 (208)
+|+..+-.-.- .-.++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 99988865331 133788999999999865
No 190
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=42.03 E-value=61 Score=24.09 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=32.7
Q ss_pred cccHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCCC
Q 040616 166 EEEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGCI 207 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~~ 207 (208)
+.-++..|+.+|..|++.-....+.-..+.++|.+++.+|+.
T Consensus 106 Dp~LIA~A~~~~~~VVT~E~~~~~~~~~~~KIPdvC~~~gV~ 147 (162)
T PF14367_consen 106 DPWLIAYAKAYGATVVTHEVSNPNKKKKKIKIPDVCEHFGVP 147 (162)
T ss_pred CHHHHHHHHhcCCEEEccCCCCCCCCccCCCCChhHHhCCCc
Confidence 346899999999999988777544444478899999998874
No 191
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=42.03 E-value=61 Score=22.87 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=21.3
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
+-.--++-....+..+++++++.|+++..+++=
T Consensus 35 i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 35 IAAIASIDIKADEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp EEEEEESSSSS--HHHHHHHHHCTSEEEEE-HH
T ss_pred ccEEEeccccCCCHHHHHHHHHhCCCeEEECHH
Confidence 333344444444668999999999999988663
No 192
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=41.77 E-value=1.4e+02 Score=23.97 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
...+.++--+..+-+.+.+++++|-+=++-++.... +.-+++++.+.|+++|-+-.- -++-++-..+++.+.
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee~ 150 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEEA 150 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHhc
Confidence 356777777788888899999999998887765443 467899999999999975322 233344444555443
No 193
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=41.67 E-value=2.3e+02 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 115 VTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 115 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
...+.++.|+++|.+-++|=||-+.+++.++++.
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 3567788999999999999999999999999876
No 194
>PRK10551 phage resistance protein; Provisional
Probab=41.61 E-value=1.8e+02 Score=26.06 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccH--HHHHHHhhcCCccEEeeccC
Q 040616 83 LRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASA--STIRRAHTIHPITVVRLEWS 159 (208)
Q Consensus 83 i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~ 159 (208)
+...+.+.++.++.+..-+. +.-.+.. ....+..+.++.|++.|- .|.+.+|.. ..+.. +...+++.+-+.-+
T Consensus 366 f~~~l~~~l~~~~~~~~~Lv-lEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~-L~~l~vD~lKID~~ 441 (518)
T PRK10551 366 FKADVQRLLASLPADHFQIV-LEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIY-LERFTLDYLKIDRG 441 (518)
T ss_pred HHHHHHHHHHhCCCCcceEE-EEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHH-HHhCCCCEEEECHH
Confidence 44556666666665533222 2211111 122446678889999998 555555532 22222 23346677776544
Q ss_pred cCCCC--------ccccHHHHHHHhCCcEEEccc
Q 040616 160 LRSRD--------VEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 160 ~~~~~--------~~~~~l~~~~~~gi~v~a~~p 185 (208)
....- .-+.+++.|++.|+.++|-..
T Consensus 442 fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 442 FIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred HHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 33221 223689999999999987543
No 195
>PLN02428 lipoic acid synthase
Probab=41.49 E-value=2.2e+02 Score=24.31 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHc--CCcce----EeeCcccHHHHHHHhhc---CCccEEee-cc----------CcCCCC-ccccH
Q 040616 111 IPIEVTIGELKRLVEE--GKIKH----IDLSEASASTIRRAHTI---HPITVVRL-EW----------SLRSRD-VEEEI 169 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~--G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~-~~----------~~~~~~-~~~~~ 169 (208)
...++.++.|+.+++. |..-. +|+ .-+.+++.+.++. ..++++.+ +| +.+-.. .-+.+
T Consensus 228 ~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~ 306 (349)
T PLN02428 228 AGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFW 306 (349)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHH
Confidence 3467889999999988 76632 455 3455665555543 44444443 22 222222 12267
Q ss_pred HHHHHHhCCcEEEcccCcc
Q 040616 170 VPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 170 l~~~~~~gi~v~a~~pl~~ 188 (208)
-+.+.+.|...++.+||-.
T Consensus 307 ~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 307 REYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHcCCceEEecCccc
Confidence 7888889999999999865
No 196
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.46 E-value=1.4e+02 Score=23.84 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=50.7
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEeeccCcCCCC-c
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIE-VTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRLEWSLRSRD-V 165 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 165 (208)
+.++..| +|.+.+|..+...... --|+.+.++++.-.+.-|.... .+++.+.++++....+.+.+---+.... .
T Consensus 162 ~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 3344555 5677777654422111 1255556666555555555443 5678888888876566655422222221 1
Q ss_pred cccHHHHHHHhCCcE
Q 040616 166 EEEIVPTCRELGIGI 180 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v 180 (208)
..++.+.|+++|+.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 347899999999864
No 197
>PRK02399 hypothetical protein; Provisional
Probab=41.14 E-value=95 Score=27.01 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--------------eeCcccHHHHHHHhhc
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHI--------------DLSEASASTIRRAHTI 148 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--------------Gvs~~~~~~l~~~~~~ 148 (208)
.+++...++|.-...|.+.+|.-..- =++||+|.++|.+..+ |+-+..++++..+.+.
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~ 270 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAART 270 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHc
Confidence 56666666666565899999975432 4789999999998865 4444556677777665
No 198
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=40.93 E-value=2.4e+02 Score=24.36 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCccc
Q 040616 114 EVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 114 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
..++..+..+.+.+.++.+-+...+.+.++++++. .+..++..+-||.-.- .-+.+.+.|+++|+.++.=..++.+
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 45555555655555566666655577888877753 3344555566665443 2347899999999999976666554
No 199
>PLN02591 tryptophan synthase
Probab=40.42 E-value=1.6e+02 Score=23.70 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=12.0
Q ss_pred cHHHHHHHhCCcEEEcc
Q 040616 168 EIVPTCRELGIGIVAYS 184 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~ 184 (208)
++.+.|+++|+..+-.-
T Consensus 122 ~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 122 ALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHcCCeEEEEe
Confidence 67777778777776543
No 200
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=40.42 E-value=1.8e+02 Score=23.86 Aligned_cols=31 Identities=10% Similarity=-0.139 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecC
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRI 107 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~ 107 (208)
..+.+.|++-..+.+..|...+++++.+.+.
T Consensus 46 ~ks~e~I~~~~~~i~~~l~~~~ik~lVIACN 76 (269)
T COG0796 46 EKSEEEIRERTLEIVDFLLERGIKALVIACN 76 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4678889999999999998888999999985
No 201
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.39 E-value=2.2e+02 Score=23.93 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=57.1
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---cceEeeC--cccHHHHHHHhhc---CCccEEeeccCc
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEE-GK---IKHIDLS--EASASTIRRAHTI---HPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~~~ 160 (208)
.+-||.+++. .+++++++++.++.+. +. ++++-+. |.+.++++++.+. .+..++-++||+
T Consensus 211 aiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp 290 (343)
T PRK14469 211 ALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNP 290 (343)
T ss_pred EEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCC
Confidence 3667877542 3577888988877765 32 3455554 5556666666544 455678889998
Q ss_pred CCCC---ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSRD---VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~~---~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
.... +.. .+.+..+++|+.+......+.
T Consensus 291 ~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~ 325 (343)
T PRK14469 291 TVPGLEKPSRERIERFKEILLKNGIEAEIRREKGS 325 (343)
T ss_pred CCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6522 111 466677888999998876654
No 202
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=40.34 E-value=1.8e+02 Score=22.75 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=35.1
Q ss_pred CcceEeeCcccHHHHHHHhhcCC-ccE----------------------EeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 128 KIKHIDLSEASASTIRRAHTIHP-ITV----------------------VRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 128 ~ir~iGvs~~~~~~l~~~~~~~~-~~~----------------------~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
.-..+=++.|+.+.++.+.+..| +.. +...|.........++++.|+++|+.+.+|.
T Consensus 132 ~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~gl~v~~wT 211 (234)
T cd08570 132 WRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLDYARHFLNYSEKLVGISMHFVSLWGPFGQAFLPELKKNGKKVFVWT 211 (234)
T ss_pred ccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHHHHHHHhccccccceEEeeeehhhcccCHHHHHHHHHCCCEEEEEe
Confidence 34567788888888777766422 111 1111111111124589999999999999987
Q ss_pred c
Q 040616 185 L 185 (208)
Q Consensus 185 p 185 (208)
.
T Consensus 212 v 212 (234)
T cd08570 212 V 212 (234)
T ss_pred c
Confidence 5
No 203
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=40.30 E-value=2.2e+02 Score=23.77 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCC----------CCCC--c----hhhhcce------EEEEeecceecCCCCccCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNV----------YGPH--T----NEILLAR------VKLTTKFGIRYEDGKYSYCGD 79 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~g--~----~e~~~g~------~~i~tK~~~~~~~~~~~~~~~ 79 (208)
+.++..+..+.+.+.|+..||.--. +|.. . .++.+.. +-|+.|+...+ +.+
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~-------~~~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW-------APE 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc-------cCC
Confidence 4566777777778899999993211 1100 0 1111111 35666665322 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEee
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPI--EVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 156 (208)
..... .+-+.++..| +|.+.+|........ ..-|+.+.++++.=.|-=||... .+++.+.++++....+.+|+
T Consensus 148 ~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 148 HRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 11111 2333456667 567778865322111 12478888888876777777766 57888999988777788887
Q ss_pred c
Q 040616 157 E 157 (208)
Q Consensus 157 ~ 157 (208)
-
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 204
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=40.30 E-value=84 Score=23.61 Aligned_cols=64 Identities=20% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCc----ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 83 LRAACEASLKCLDVDC----IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 83 i~~~~~~sL~~L~~d~----iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.++.++..++++|.+. .+.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556667777777641 11111111 11223467788899999888 44455688777776666654
No 205
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.29 E-value=2.6e+02 Score=24.61 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecC-CCCCCHHHHHHHHHHHHHc--CCcceEeeCc--c-cHHHHHHHhhcC
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRI-DTKIPIEVTIGELKRLVEE--GKIKHIDLSE--A-SASTIRRAHTIH 149 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~--~-~~~~l~~~~~~~ 149 (208)
...+++++.+.+++..+.+. .++.+.+-.| +|....+.+++.+..++++ |. .+.+++ + .++.++++.+..
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~g 133 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDLG 133 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHCC
Confidence 46788999988888877662 3566666664 3333445688888888887 44 456654 2 367777776642
Q ss_pred CccEEeeccCcCCCCcc---------------------------ccHHHHHHHhCCcEEEcccCcccc
Q 040616 150 PITVVRLEWSLRSRDVE---------------------------EEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 150 ~~~~~q~~~~~~~~~~~---------------------------~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
++.+.+.++-.++... .+-++.+.+.|+.+....++--|.
T Consensus 134 -vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 134 -VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred -CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 4566666665443210 123566778899888878877663
No 206
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=40.21 E-value=1.9e+02 Score=22.96 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=37.3
Q ss_pred cCCcceEeeCcccHHHHHHHhhcCC-ccEEe---------------e---ccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 126 EGKIKHIDLSEASASTIRRAHTIHP-ITVVR---------------L---EWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 126 ~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q---------------~---~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
.+..+.+-+++|+++.+..+.+..| +.... . .+++-.......+++.++++|+.+.+|..
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 3444567889999988887766422 10000 0 01111122245899999999999999975
No 207
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=40.01 E-value=59 Score=26.69 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=53.3
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc------ccHHHHHHHhhc--CCccEEeeccCcC
Q 040616 90 SLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE------ASASTIRRAHTI--HPITVVRLEWSLR 161 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~~~~l~~~~~~--~~~~~~q~~~~~~ 161 (208)
++++...+..|+..+..|.... -.+.++ +.... .+|=|+. ++..++.++.+. .+..++-..||+.
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g--CpVi~s---l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG--CPVIAS---LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC--ChHHHh---hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 3333333447888888774322 112222 22222 2444543 233445555554 5667777788655
Q ss_pred CCCccccHHHHHHHhCCcEEEcccCccc
Q 040616 162 SRDVEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 162 ~~~~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
+. ++-++|++.|+.+++.-|+..-
T Consensus 228 ~s----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 228 DS----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred ch----HHHHHHHHcCCCeeEECCcchh
Confidence 43 7999999999999999998753
No 208
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.96 E-value=2.3e+02 Score=23.96 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=57.2
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcCC----cceEeeC--cccHHHHHHHhh---cCCccEEeeccCc
Q 040616 101 LYYQHRIDTK-----------IPIEVTIGELKRLVEEGK----IKHIDLS--EASASTIRRAHT---IHPITVVRLEWSL 160 (208)
Q Consensus 101 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~ 160 (208)
.+-||.++++ .+++++++++.++.++.. |+++=+. |.+.+++.++.+ .....++-++||+
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp 285 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNP 285 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 5777877543 356788999987776543 3455554 456655555544 3556788889998
Q ss_pred CCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 161 RSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 161 ~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
.... +.. .+.+..+++|+.+......+.
T Consensus 286 ~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 286 WEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6521 222 355567778999999887765
No 209
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.90 E-value=35 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecC----CCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 82 YLRAACEASLKCLDVDCIDLYYQHRI----DTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~d~iDl~~lh~~----~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
.-|.++-+.|..-..++++..-|+.- .+......+++.|+.|.+.|+|+.+-+.+
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34555556665543345555444432 34456788999999999999999997755
No 210
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=39.68 E-value=2.4e+02 Score=24.12 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.++.+.. ..+-+.|.++|+++|++- +|... ++-|+.+..+.+.|. .+.++.+......++.+.+.. ++.+.
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCG-VDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCC-cCEEE
Confidence 4555544 445566999999999975 33221 233556666665554 344445544577788877653 34444
Q ss_pred eccCcCCC--------C------ccccHHHHHHHhCCcEEEcccC
Q 040616 156 LEWSLRSR--------D------VEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 156 ~~~~~~~~--------~------~~~~~l~~~~~~gi~v~a~~pl 186 (208)
+.+..-+. . .-.+.+++++++|+.+....+.
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 43332221 0 1225788999999887765443
No 211
>PLN02438 inositol-3-phosphate synthase
Probab=39.51 E-value=2.5e+02 Score=25.28 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CHHHHHHHHHHHHHcCC
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKI----PIEVTIGELKRLVEEGK 128 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ 128 (208)
.+.|++.+++..++-++|.+=++...+-++.. +..+++++|++..+++-
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 45677777777788888886666555543322 34468888888888765
No 212
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=39.50 E-value=1.4e+02 Score=26.88 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
.......+++.+.|+-||.++ |-... ....++...+++++|.++|+.- +|..+.+++++...
T Consensus 57 R~~~e~~~~I~~dL~WLGl~w-D~~~~----qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~r~ 118 (523)
T PLN03233 57 KEKAEFEESIIEDLGKIEIKP-DSVSF----TSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKERA 118 (523)
T ss_pred ccchHHHHHHHHHHHHhCCCC-CCCcc----ccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHHHh
Confidence 345567788999999999985 53221 1234677889999999999976 68888888877643
No 213
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=39.39 E-value=2.3e+02 Score=23.77 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCcceEeeCc---------ccHHHHHHHhhcCCccEEeeccCcCC--CCccccHHHHHHHhCCcEEEcc
Q 040616 116 TIGELKRLVEEGKIKHIDLSE---------ASASTIRRAHTIHPITVVRLEWSLRS--RDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
..+.++.+.+-+.++.|.++. .+.+.++.+.+.....+....+|... ...-..-++.+++.|+.+...+
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qt 257 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQS 257 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeec
Confidence 555666666666555555432 23333343333332223333344321 1112256777899999999999
Q ss_pred cCcccccCC
Q 040616 185 LLGRGFLSS 193 (208)
Q Consensus 185 pl~~G~l~~ 193 (208)
++..|...+
T Consensus 258 vLl~gvnD~ 266 (331)
T TIGR00238 258 VLLRGVNDR 266 (331)
T ss_pred ceECCcCCC
Confidence 999986553
No 214
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=39.20 E-value=1.3e+02 Score=20.82 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc-----ccHHHHHHHhhcCCccEEe
Q 040616 81 AYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE-----ASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 81 ~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~~~~q 155 (208)
..+--.+-++++++| +..+.++..++.... +....-..-.++-.. .+.+.+.++.....++.+-
T Consensus 11 Geia~r~~ra~r~~G---i~tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 11 GEIAVRIIRALRELG---IETVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH 79 (110)
T ss_dssp HHHHHHHHHHHHHTT---SEEEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHHHHhC---CcceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCcccc
Confidence 344556778888887 455666654332211 233334445555222 4677888887777778877
Q ss_pred eccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 156 LEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
--|..+.- ..++.+.|.+.||.+++-+|
T Consensus 80 pGyg~lse--~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 80 PGYGFLSE--NAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp STSSTTTT--HHHHHHHHHHTT-EESSS-H
T ss_pred cccchhHH--HHHHHHHHHHCCCEEECcCh
Confidence 77877776 55899999999998876443
No 215
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.93 E-value=1.5e+02 Score=21.62 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccE
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDL 101 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl 101 (208)
+...+..+.+.-.++||+.|=.-|.|. .++.+|+ -+-.||.... ..||+
T Consensus 28 P~r~sy~V~kyL~~~GY~ViPVNP~~~---~~eiLG~---------------------------k~y~sL~dIp-e~IDi 76 (140)
T COG1832 28 PDRPSYRVAKYLQQKGYRVIPVNPKLA---GEEILGE---------------------------KVYPSLADIP-EPIDI 76 (140)
T ss_pred CCccHHHHHHHHHHCCCEEEeeCcccc---hHHhcCc---------------------------hhhhcHHhCC-CCCcE
Confidence 445578888888899999998877665 5778773 1224555555 56777
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcC
Q 040616 102 YYQHRIDTKIPIEVTIGELKRLVEEG 127 (208)
Q Consensus 102 ~~lh~~~~~~~~~~~~~~l~~l~~~G 127 (208)
+-+-++ .+.+.+..+++.+.|
T Consensus 77 VdvFR~-----~e~~~~i~~eal~~~ 97 (140)
T COG1832 77 VDVFRR-----SEAAPEVAREALEKG 97 (140)
T ss_pred EEEecC-----hhhhHHHHHHHHhhC
Confidence 776654 244555555555555
No 216
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=38.73 E-value=1.5e+02 Score=21.33 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=41.9
Q ss_pred hhhcceEEEEee-cceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 040616 53 EILLARVKLTTK-FGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLYYQHRIDTK-IPIEVTIGELKRLVEE 126 (208)
Q Consensus 53 e~~~g~~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 126 (208)
...+| +.|+-| ++. ...+..+++.+.++.+... ..-.|++++..+... .+..++.+.|..|.+.
T Consensus 45 ~~RiG-~~VsKK~~g~---------AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 45 HPRLG-LVIGKKSVKL---------AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred CccEE-EEEecccCcc---------HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34555 666777 553 3567778888877776543 346899999987543 4566777666666543
No 217
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=38.62 E-value=81 Score=25.08 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=37.0
Q ss_pred cHHHHHHHhhcCCccEEee----ccCcCCCC---ccccHHHHHHHhCCcEEEcccCcccccCC
Q 040616 138 SASTIRRAHTIHPITVVRL----EWSLRSRD---VEEEIVPTCRELGIGIVAYSLLGRGFLSS 193 (208)
Q Consensus 138 ~~~~l~~~~~~~~~~~~q~----~~~~~~~~---~~~~~l~~~~~~gi~v~a~~pl~~G~l~~ 193 (208)
++.+++.+.+...+.++-+ +||.+... ...++.++++.-|-.-...+|+..|...+
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~ 112 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPG 112 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCC
Confidence 4556666666554444433 45555543 22379999999999999999999865443
No 218
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.14 E-value=1.2e+02 Score=24.43 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHH-HHcCCcceEeeCcc-------cHHHHHHHhhcCCccEEe
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRL-VEEGKIKHIDLSEA-------SASTIRRAHTIHPITVVR 155 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l-~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q 155 (208)
...+++.|+..+ +|||.+=+-|-......+++++...++ ++-|.--+.|=.-+ ..++..+..+...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 466778888888 899999999865444444555544444 44554445552211 122222333336677777
Q ss_pred eccCcCCCCccc--cHHHHHHHhCCcEEE
Q 040616 156 LEWSLRSRDVEE--EIVPTCRELGIGIVA 182 (208)
Q Consensus 156 ~~~~~~~~~~~~--~~l~~~~~~gi~v~a 182 (208)
+.=....-..+. .+++.++++|..|+.
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 765555443222 678888888777664
No 219
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.03 E-value=1.3e+02 Score=22.91 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEee-CcccHHHHHHHhhcCCccEEeeccC
Q 040616 92 KCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDL-SEASASTIRRAHTIHPITVVRLEWS 159 (208)
Q Consensus 92 ~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~q~~~~ 159 (208)
.++|.|++-+.+-.......+ .+..+.|.++... .+..+|| .|-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467877766654332222222 3444444444433 3667887 4778888888888888999998654
No 220
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.91 E-value=2.5e+02 Score=23.78 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=54.7
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCccc-HHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHHHH
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEAS-ASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTCRE 175 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~~~ 175 (208)
.++.++-.|-+. . -++.+.+++++-.+. +.|=+-++ ..++.++++...++++|+..+..-. ..-..+...|++
T Consensus 215 ~~l~~iEeP~~~---~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~ 290 (368)
T cd03329 215 LGFFWYEDPLRE---A-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEA 290 (368)
T ss_pred cCCCeEeCCCCc---h-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 345555555322 2 246677888775553 23334466 8889999888888999998776422 123489999999
Q ss_pred hCCcEEEcc
Q 040616 176 LGIGIVAYS 184 (208)
Q Consensus 176 ~gi~v~a~~ 184 (208)
+|+.+...+
T Consensus 291 ~gi~~~~h~ 299 (368)
T cd03329 291 FGLDVELHG 299 (368)
T ss_pred cCCEEEEEC
Confidence 999997644
No 221
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=37.90 E-value=1.4e+02 Score=20.94 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=42.5
Q ss_pred hhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 040616 53 EILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLYYQHRIDT-KIPIEVTIGELKRLVEE 126 (208)
Q Consensus 53 e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 126 (208)
...+| +.|+-|+... ......+++.+.++++... .+..|++++..+.. ..+..++.+.|..|.+.
T Consensus 43 ~~R~G-~~VsKK~~~~--------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 43 HPRLG-LVVGKKTAKR--------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred CceEE-EEEecccCcc--------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34455 7777775421 3567788888888876543 24579999998853 34566666666666543
No 222
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=37.78 E-value=97 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCcceEeeC-----c---c---cHHHHHHHhhcCC-ccEEeeccCcCCCCc
Q 040616 117 IGELKRLVEEGKIKHIDLS-----E---A---SASTIRRAHTIHP-ITVVRLEWSLRSRDV 165 (208)
Q Consensus 117 ~~~l~~l~~~G~ir~iGvs-----~---~---~~~~l~~~~~~~~-~~~~q~~~~~~~~~~ 165 (208)
.+...+|+++|+++++.-. | | +.+++.+++..-| +.+..++..|+.+.+
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~~Hp 88 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLARHP 88 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecccCC
Confidence 4566889999999886522 1 2 4567777777654 456667777776653
No 223
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=37.38 E-value=2.6e+02 Score=23.83 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc--------
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-------- 148 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------- 148 (208)
..+++.+++-+++.|.+.|++.-| ...+-+.|... ..-|+.+|...++..+++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~------------A~~vA~~lv~a------d~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED------------ARAVADVLVAA------DLRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHH------HhcCCcccchHHHHHHHHHHHcCCcCC
Confidence 457899999999999999875211 12222322222 1345666666666665543
Q ss_pred --------CCccEEeeccCcCCCC-----ccccHHHHHHHhCCcEEEc
Q 040616 149 --------HPITVVRLEWSLRSRD-----VEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 149 --------~~~~~~q~~~~~~~~~-----~~~~~l~~~~~~gi~v~a~ 183 (208)
..+.+.++.-+-..-+ .-+..++.|+++||++++-
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 1233333332222111 2236899999999998863
No 224
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=37.37 E-value=1.3e+02 Score=20.44 Aligned_cols=86 Identities=8% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCeEeCCC--C-C-CCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEE
Q 040616 29 LIHHAIDSGITVLDTSN--V-Y-GPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLY 102 (208)
Q Consensus 29 ~l~~A~~~Gi~~~DtA~--~-Y-g~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~ 102 (208)
-+...++.|-++...-- . . .+......+| +.|+-|++. ...++.+++.+.++..... ....|++
T Consensus 12 eF~~v~~~g~~~~~~~~~l~~~~~~~~~~~RlG-i~vsKK~g~---------AV~RNriKR~lRe~~R~~~~~l~~~d~v 81 (105)
T TIGR00188 12 EFQKVFQQGTRFSNPFLTIYVLDKNELDHPRVG-LSVSKKVKN---------AVERNRIKRLIREVFRERQELLKALDVV 81 (105)
T ss_pred HHHHHHhCCcEeeCCcEEEEEEcCCCCCCcEEE-EEEecccCc---------hhHHHHHHHHHHHHHHHhhcccCCccEE
Confidence 35566677755432111 0 1 1112233444 778888764 4567777777777776543 2368988
Q ss_pred EeecCCC-CCCHHHHHHHHHHHH
Q 040616 103 YQHRIDT-KIPIEVTIGELKRLV 124 (208)
Q Consensus 103 ~lh~~~~-~~~~~~~~~~l~~l~ 124 (208)
++-.+.. ..+..+..+.|..|.
T Consensus 82 ~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 82 VIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEECCCcCcCCHHHHHHHHHHHh
Confidence 8888754 456777777777653
No 225
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=37.21 E-value=1.2e+02 Score=20.88 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred eCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 134 LSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 134 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
.+..+.+.+..++... |+++-+--.--...+..++.++++++||++..+..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4455677777776643 565554333222222458889999999999987653
No 226
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.12 E-value=2.6e+02 Score=23.63 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeec-CCC-------CCC-HHHH---HH-HHHHHHHcCCcceEeeCcccH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDT-------KIP-IEVT---IG-ELKRLVEEGKIKHIDLSEASA 139 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~-------~~~-~~~~---~~-~l~~l~~~G~ir~iGvs~~~~ 139 (208)
..+.+.+.+.++..+ +++.+++.++.+-- |.. ..+ .++. ++ +.+.|.+.|. ..+.+|||..
T Consensus 163 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 236 (360)
T TIGR00539 163 LQTLNSLKEELKLAK-ELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGF-KQYEVSNYAK 236 (360)
T ss_pred CCCHHHHHHHHHHHH-ccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCC-ceeehhhhcC
Confidence 456777777777655 47888887776541 110 011 1112 22 3344555665 4678888753
No 227
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.92 E-value=1.7e+02 Score=23.68 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=10.1
Q ss_pred cHHHHHHHhCCcEEE
Q 040616 168 EIVPTCRELGIGIVA 182 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a 182 (208)
++++.|+++|+..+.
T Consensus 133 ~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 133 ELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHcCCcEEE
Confidence 566677777766664
No 228
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=36.79 E-value=26 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHCCCCeEeCCCCCC
Q 040616 28 ALIHHAIDSGITVLDTSNVYG 48 (208)
Q Consensus 28 ~~l~~A~~~Gi~~~DtA~~Yg 48 (208)
..+...++.|+|+||---.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 347888999999999654443
No 229
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=36.63 E-value=8.8 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=23.1
Q ss_pred ccHHHHHHHhCCcEEEcccCcccccCCCCC
Q 040616 167 EEIVPTCRELGIGIVAYSLLGRGFLSSGPK 196 (208)
Q Consensus 167 ~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~ 196 (208)
+..+++++++|..|+..+|+....+...+.
T Consensus 45 ~~~l~~a~~~~~kv~p~C~y~~~~~~~hpe 74 (78)
T PF14542_consen 45 EAALDYARENGLKVVPTCSYVAKYFRRHPE 74 (78)
T ss_dssp HHHHHHHHHTT-EEEETSHHHHHHHHH-GG
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHhCcc
Confidence 378999999999999999998876655443
No 230
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.58 E-value=2.3e+02 Score=22.93 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc--CCccEEee
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI--HPITVVRL 156 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 156 (208)
+.+.+.+..++. ..-|-+.||+=.= +.+....+.+...++.+++.-. .-|.+-+++++.++++++. ..+-+|-+
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 344444443333 3558899998743 2222223445555566654422 2477888999999999987 44434433
Q ss_pred ccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 157 EWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
.... .+ .+.+++.++++|+.+++..-
T Consensus 99 s~~~-~~--~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 99 SAEG-EK--LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CCCC-cc--CHHHHHHHHHhCCCEEEEec
Confidence 3211 11 34789999999999997553
No 231
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=36.58 E-value=2e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=25.7
Q ss_pred ccHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCC
Q 040616 167 EEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGC 206 (208)
Q Consensus 167 ~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~ 206 (208)
+++-+.|++.|+.+..=.|++.=.-.+++.+.+.++.+|+
T Consensus 93 ~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk 132 (217)
T PF02593_consen 93 RQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK 132 (217)
T ss_pred HHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC
Confidence 4777888888888887777775222345555555555554
No 232
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=36.55 E-value=44 Score=29.68 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=31.8
Q ss_pred CcCcc-cccccccccCCCCCCCHHHHHHHHHHHHHCCCCe---EeCCCCCC
Q 040616 2 EVSGQ-GLRCMGMFAFYGPPKPESCMIALIHHAIDSGITV---LDTSNVYG 48 (208)
Q Consensus 2 ~v~~l-g~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~---~DtA~~Yg 48 (208)
+.|.| ..|+++.... .+.+++.++++.|.-.|||. |||-.|-|
T Consensus 231 ~~PeL~~kGaYs~~~v----YT~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 231 TFPELHRKGAYSPRHV----YTREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred CchhhhhcCCCCccee----ecHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 35666 6777765322 26788999999999999997 68877654
No 233
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=36.45 E-value=71 Score=25.32 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCCcceEee----CcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCc
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDL----SEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
..++..++|..++ +.+|.. |.+...+++.+.+...+ -.|.|+-...+.++++..-+.|..++.-+.-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl----~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL----KVYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC----EEeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 4566777777776 445543 44555667777665443 24556666656788888888888877777776
Q ss_pred cccc---CCCC-------CcccchhhcCCC
Q 040616 188 RGFL---SSGP-------KLIHLSATKGCI 207 (208)
Q Consensus 188 ~G~l---~~~~-------~~~~~a~~~~~~ 207 (208)
.|+- .++. .+..+.++||+.
T Consensus 146 ~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~ 175 (223)
T COG2102 146 EGLDESWLGRRIDREFLEELKSLNRRYGIH 175 (223)
T ss_pred cCCChHHhCCccCHHHHHHHHHHHHhcCCC
Confidence 6642 2221 256677777764
No 234
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.13 E-value=1.4e+02 Score=24.23 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.++.+... .+-+.|.++|++.|.+-. |... ++.+++.+.+.+.++ .+-.+.+..+.+.++.+.+.. ++.+-
T Consensus 18 ~~s~~~k~-~i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 18 FFDTEDKI-EIAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCEEE
Confidence 34555544 445559999998888874 4332 344555555554443 333555667788888888763 33333
Q ss_pred eccCc--------CCCC------ccccHHHHHHHhCCcEEEcc
Q 040616 156 LEWSL--------RSRD------VEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 156 ~~~~~--------~~~~------~~~~~l~~~~~~gi~v~a~~ 184 (208)
+.++. .... .-.+.+++++++|+.+....
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 32221 1111 11256788899998766543
No 235
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.10 E-value=2.1e+02 Score=22.27 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCC-----eEeCCCCCCCCchhhhcce---EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC
Q 040616 25 CMIALIHHAIDSGIT-----VLDTSNVYGPHTNEILLAR---VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV 96 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~-----~~DtA~~Yg~g~~e~~~g~---~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 96 (208)
.+.-+..+|+-+|++ |+=.+..||--.....++. ......... +.+. ....+.+..++..+.+++.+..
T Consensus 44 AAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~t-w~~~--~~~~d~~aa~~~w~~a~~~l~~ 120 (198)
T COG2109 44 AALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFT-WETQ--DREADIAAAKAGWEHAKEALAD 120 (198)
T ss_pred HHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCcee-CCCc--CcHHHHHHHHHHHHHHHHHHhC
Confidence 366677777778877 4456656662222333322 111121111 1100 0112446788999999999999
Q ss_pred CcccEEEeecCCC-----CCCHHHHHHHHH
Q 040616 97 DCIDLYYQHRIDT-----KIPIEVTIGELK 121 (208)
Q Consensus 97 d~iDl~~lh~~~~-----~~~~~~~~~~l~ 121 (208)
+..|+++|.-... ..+.+++.+.|.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 9999999986532 345677777665
No 236
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=35.99 E-value=1.5e+02 Score=20.65 Aligned_cols=87 Identities=7% Similarity=0.035 Sum_probs=50.5
Q ss_pred HHHHHHCCCCeEeCCC--CC-CCCchhhhcceEEEEee-cceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEEE
Q 040616 30 IHHAIDSGITVLDTSN--VY-GPHTNEILLARVKLTTK-FGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLYY 103 (208)
Q Consensus 30 l~~A~~~Gi~~~DtA~--~Y-g~g~~e~~~g~~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~ 103 (208)
++..++.|-++....- .| .++.....+| +.|+-| ++. ......+++.+.++.+... ....|+++
T Consensus 18 F~~v~~~g~~~~~~~~~l~~~~~~~~~~R~G-~~VsKK~~g~---------AV~RNriKR~lRe~~R~~~~~l~~~diVv 87 (114)
T PRK01732 18 FKFVFQQPQRAGTPEITILARLNSLGHPRLG-LTVAKKNVKR---------AHERNRIKRLTRESFRLHQHELPAMDFVV 87 (114)
T ss_pred HHHHHhCCcCccCCCEEEEEecCCCCCcEEE-EEEEcccCcc---------hhHHHHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 4555666655432110 11 1112334444 666666 553 3557777777777776543 24579999
Q ss_pred eecCCC-CCCHHHHHHHHHHHHHc
Q 040616 104 QHRIDT-KIPIEVTIGELKRLVEE 126 (208)
Q Consensus 104 lh~~~~-~~~~~~~~~~l~~l~~~ 126 (208)
+-.+.. +.+..++.+.|..+.+.
T Consensus 88 iar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 88 IAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EeCCCcccCCHHHHHHHHHHHHHH
Confidence 987754 45677888777776543
No 237
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.65 E-value=2.2e+02 Score=22.98 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-------HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCC
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIP-------IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHP 150 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~-------~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 150 (208)
-+.+.+.+..+. ++++|.. ++.=-..++... -.+-++.|.+.+++=-+. +-.+-|+.++++.+.+ .
T Consensus 26 Es~e~~~~~a~~-~~~~g~~---~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-~~Tev~d~~~v~~~~e-~- 98 (250)
T PRK13397 26 ESYDHIRLAASS-AKKLGYN---YFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-SVSEIMSERQLEEAYD-Y- 98 (250)
T ss_pred CCHHHHHHHHHH-HHHcCCC---EEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-EEEeeCCHHHHHHHHh-c-
Confidence 345555555554 8888753 333332222211 123455555554432222 2224588889988877 3
Q ss_pred ccEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 151 ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 151 ~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
++++|+.--.... .++++.+.+.|.+|+....
T Consensus 99 vdilqIgs~~~~n---~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 99 LDVIQVGARNMQN---FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred CCEEEECcccccC---HHHHHHHHccCCeEEEeCC
Confidence 7889985544433 5899999999999988777
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=35.42 E-value=2.1e+02 Score=22.26 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHC------CCCeEeCCCCCCCCchhhhcce---------EEEEeecceecCCCCccCCCChHHHHHHH
Q 040616 23 ESCMIALIHHAIDS------GITVLDTSNVYGPHTNEILLAR---------VKLTTKFGIRYEDGKYSYCGDPAYLRAAC 87 (208)
Q Consensus 23 ~~~~~~~l~~A~~~------Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 87 (208)
.+...+++...++. .+-.+|.-..-- ..+..+=+ +++.||..- .......+.+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK----------i~~~~~~k~l 157 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc----------CChhHHHHHH
Confidence 45567777776653 444677644332 22222222 899999973 4566778888
Q ss_pred HHHHHHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 040616 88 EASLKCLDVDCIDL--YYQHRIDTKIPIEVTIGELKRLVEE 126 (208)
Q Consensus 88 ~~sL~~L~~d~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 126 (208)
....+.|+.+..|- +++........+++.+..+.+...+
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 99999998877776 5555555556788888888877654
No 239
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.28 E-value=1.6e+02 Score=20.72 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=44.4
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC---CcccEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV---DCIDLYYQHRIDTK-IPIEVTIGELKRLVEE 126 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 126 (208)
..+| +.|+-|++.. ...++.+++.+.+.++.+.. ...|++++-.+... .+..+..+.|..+.+.
T Consensus 47 ~R~G-~~VsKK~~~~--------AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFG-ISISQKVSKK--------AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEE-EEEecccccc--------hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444 6777775521 45678888888888876642 45899999988543 5677888888777654
No 240
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=35.07 E-value=2.6e+02 Score=23.03 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=83.2
Q ss_pred HHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEee
Q 040616 26 MIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 26 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh 105 (208)
..++-....+.|.|.+|...+ ++ ..-|.+|.-..+.... ...+.+.+++.+...-+.++.+ +-+|
T Consensus 21 Vaais~~l~~~g~NI~~~~qf-~D----~~~g~FFmR~~f~~~~------~~~~~~~l~~~f~~~a~~f~m~----~~~~ 85 (287)
T COG0788 21 VAAISGFLAEHGCNIVDSDQF-DD----PETGRFFMRVEFEGEG------GPLDREALRAAFAPLAEEFGMD----WRLH 85 (287)
T ss_pred HHHHHHHHHHcCCceeecccc-cc----cccCeEEEEEEEecCC------CcccHHHHHHHHHHHHHhhCce----eEEe
Confidence 445555557999999998766 41 3335566666665432 2367888999999887888754 3344
Q ss_pred cCCCCCC----HHHHHHHHHHHH---HcCC--cceEe-eCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHH
Q 040616 106 RIDTKIP----IEVTIGELKRLV---EEGK--IKHID-LSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCR 174 (208)
Q Consensus 106 ~~~~~~~----~~~~~~~l~~l~---~~G~--ir~iG-vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~ 174 (208)
.++.... ....-..|.+|. +.|- +.=.+ +||+. .++.+.+.+.+.+--++.+..++. .+..+++..+
T Consensus 86 ~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~--dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~ 163 (287)
T COG0788 86 DAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHD--DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLE 163 (287)
T ss_pred ccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCH--HHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHH
Confidence 4432211 011112222222 1222 22233 46765 777887777766777777666543 4457999999
Q ss_pred HhCCcEEE
Q 040616 175 ELGIGIVA 182 (208)
Q Consensus 175 ~~gi~v~a 182 (208)
+.++-++.
T Consensus 164 ~~~~DlvV 171 (287)
T COG0788 164 EYGADLVV 171 (287)
T ss_pred HhCCCEEe
Confidence 99877775
No 241
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.56 E-value=41 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHH----HHCCCCeEeC
Q 040616 22 PESCMIALIHHA----IDSGITVLDT 43 (208)
Q Consensus 22 ~~~~~~~~l~~A----~~~Gi~~~Dt 43 (208)
++.+|.++++.| ++.|+.++|.
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~n 40 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNN 40 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 456778888777 5679998863
No 242
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.56 E-value=30 Score=25.38 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccC
Q 040616 140 STIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLS 192 (208)
Q Consensus 140 ~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~ 192 (208)
..+..+++...|+|+-. ...+. .++.+..+-++++.++.-|.+.++-++
T Consensus 30 kvia~~l~d~GfeVi~~---g~~~t-p~e~v~aA~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 30 KVIARALADAGFEVINL---GLFQT-PEEAVRAAVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred HHHHHHHHhCCceEEec---CCcCC-HHHHHHHHHhcCCCEEEEEeccchHHH
Confidence 34555555555544332 22222 245566666666666666666655433
No 243
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=34.47 E-value=2.5e+02 Score=27.18 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=54.2
Q ss_pred CCCChHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHc
Q 040616 76 YCGDPAYLRAACEASLKCLDV--------------------------DCIDLYYQHRIDTKIPI---EVTIGELKRLVEE 126 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~ 126 (208)
+......+++.++..|+.++. ....+++|..|....|. ..+|..+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 345566788888888887753 23566778777554443 4689999999999
Q ss_pred CCcceEeeCcccHHHHHHHhhc
Q 040616 127 GKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 127 G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
|+ ++=+.+|+-++.+.+-..
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 99 888999999998888765
No 244
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.45 E-value=2.5e+02 Score=24.35 Aligned_cols=81 Identities=7% Similarity=0.022 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh--cCCccEEeeccCcCCCCcc-ccHHHHHHHhCCcEEEcccCcc
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT--IHPITVVRLEWSLRSRDVE-EEIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~ 188 (208)
-+..+.+.++.+.++.-|....+-..+.+.+.+++. ..+..+++.+-||...-.+ ..+.+.|+++|+-++.=..|+.
T Consensus 111 ~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 111 LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 367788888898888888887777777766666654 4778889999999887532 2789999999988888778877
Q ss_pred cccC
Q 040616 189 GFLS 192 (208)
Q Consensus 189 G~l~ 192 (208)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 7655
No 245
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=34.24 E-value=2.6e+02 Score=22.90 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCC-------Cchhhh----cce-----------------EEEEeecceec----
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGP-------HTNEIL----LAR-----------------VKLTTKFGIRY---- 69 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------g~~e~~----~g~-----------------~~i~tK~~~~~---- 69 (208)
.++...++-+..+++|-+.+-|...-.+ |.+++. ... ++|..-+++..
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~ 118 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLS 118 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S----
T ss_pred CHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccch
Confidence 4566778888888999999988754321 111111 000 46666666542
Q ss_pred -CCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcc-----------
Q 040616 70 -EDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEA----------- 137 (208)
Q Consensus 70 -~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~----------- 137 (208)
..-......+.+.+++.-...++.|--..+|++++-..........+.+++++.. ++--.++++-.
T Consensus 119 g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~--~~p~~is~~~~~~~~l~~g~~~ 196 (305)
T PF02574_consen 119 GSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVT--GLPVWISFSCKDSGRLRDGTSL 196 (305)
T ss_dssp ----CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHH--HCCSSEEE-EEEEES-TCTTBC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhh--hhhceeccchhhhccccCCCCH
Confidence 1111223557778888887777777555699999987654444555666666532 23333344321
Q ss_pred --cHHHHHHHhh--cCCccEEeeccCcCCCCccccHHHHHHHh-CCcEEEccc
Q 040616 138 --SASTIRRAHT--IHPITVVRLEWSLRSRDVEEEIVPTCREL-GIGIVAYSL 185 (208)
Q Consensus 138 --~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~~~~l~~~~~~-gi~v~a~~p 185 (208)
....+.++.. ...++.+-+++...... ...+.+..... ++.+++|--
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~-~~~l~~~~~~~~~~~l~vyPN 248 (305)
T PF02574_consen 197 EDAVQVIDELLRALPPGPDAIGVNCTSPPEI-MKALLELMSATHDIPLIVYPN 248 (305)
T ss_dssp TTSHHHHHHHHHHHCTT-SEEEEESSS-HHH-HHHHHHHHHHHT-SEEEEE--
T ss_pred HHHHHHHHHHHHHhhhhhheEEcCCCCcHHH-HhHHHHHHhccCCceEEEecC
Confidence 1223333321 13466666665544331 12344444442 778877643
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=34.05 E-value=62 Score=25.56 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=32.2
Q ss_pred cccEEEeecCCCCCC----HHHHHHHHHHHHHcCCcceEeeCcccHHHH
Q 040616 98 CIDLYYQHRIDTKIP----IEVTIGELKRLVEEGKIKHIDLSEASASTI 142 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 142 (208)
..|++++...+.... -++.++.+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 358888876543211 234578888999999999999998777663
No 247
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=34.00 E-value=70 Score=22.01 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhhcC-CccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 135 SEASASTIRRAHTIH-PITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 135 s~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
+..+.+.+..+.... +|+++=+--.--......++.++++++||++..+..-
T Consensus 37 ~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 37 HDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp TCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred ccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 345677888887763 4676666443333333568999999999999987643
No 248
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=33.65 E-value=2e+02 Score=21.52 Aligned_cols=55 Identities=18% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCC---------ccccHHHHHHHhCCcEEEcc
Q 040616 127 GKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRD---------VEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 127 G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~---------~~~~~l~~~~~~gi~v~a~~ 184 (208)
+.=+.||+|.++.+++.++.+... |. +-++|.... ....+-++++...++++|.+
T Consensus 93 ~~~~~ig~S~h~~~e~~~a~~~g~-dY--v~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 93 GPDKIIGASCHSLEEAREAEELGA-DY--VFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp TTTSEEEEEESSHHHHHHHHHCTT-SE--EEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEES
T ss_pred ccceEEEeecCcHHHHHHhhhcCC-CE--EEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEc
Confidence 334589999999999888875422 22 223333221 12256677778889998843
No 249
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.51 E-value=2e+02 Score=22.72 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHH-HHHcCCcceEeeCcccHHHHHHHhhcCC-c----------------------------cEEeeccCcC-CC
Q 040616 115 VTIGELKR-LVEEGKIKHIDLSEASASTIRRAHTIHP-I----------------------------TVVRLEWSLR-SR 163 (208)
Q Consensus 115 ~~~~~l~~-l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~----------------------------~~~q~~~~~~-~~ 163 (208)
+..+.+.+ +++.|.-+.+=++.|+.+.+.++.+..| + .++.+.++-. ..
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 119 AAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred hHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 34443333 3345666788889999888888776532 1 1111111100 01
Q ss_pred CccccHHHHHHHhCCcEEEccc
Q 040616 164 DVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 164 ~~~~~~l~~~~~~gi~v~a~~p 185 (208)
....++++.++++|+.+.+|..
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTV 220 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTV 220 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEec
Confidence 1234899999999999999985
No 250
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.49 E-value=2.2e+02 Score=21.83 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce--EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCC
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR--VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVD 97 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~--~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d 97 (208)
..+.++..++++.|.+.|+.-+-+.+.+-. ...+.+.. +.+.+=++... .....+.....++++++ +|.|
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~-~~~~~l~~~~~~v~~~~~fp~------g~~~~~~k~~eve~A~~-~GAd 84 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP-LAREALKGSGVKVCTVIGFPL------GATTTEVKVAEAREAIA-DGAD 84 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH-HHHHHcCCCCcEEEEEEecCC------CCCcHHHHHHHHHHHHH-cCCC
Confidence 346788999999999988887766554420 11222222 44444444322 12345556666888777 5999
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcce--EeeCcccHHHHHHHhhc---CCccEEeec--cCcCCC
Q 040616 98 CIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKH--IDLSEASASTIRRAHTI---HPITVVRLE--WSLRSR 163 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~--iGvs~~~~~~l~~~~~~---~~~~~~q~~--~~~~~~ 163 (208)
-+|+++--..-.....+.+++.+.+++++ |+.-. +...-.+.+.+..+.+. ...|++... |.+...
T Consensus 85 evdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a 159 (203)
T cd00959 85 EIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGA 159 (203)
T ss_pred EEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 99988765432233456677777777776 44322 23334556666666554 567888888 754333
No 251
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=33.45 E-value=1.1e+02 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=12.3
Q ss_pred cHHHHHHHhCCcEEEccc
Q 040616 168 EIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~p 185 (208)
..++.|++.|+..+..-|
T Consensus 89 ~~i~~A~~lG~~~v~~~~ 106 (279)
T cd00019 89 DEIERCEELGIRLLVFHP 106 (279)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 567777777877766433
No 252
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=33.41 E-value=2.8e+02 Score=22.97 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHCCCCeEeC----------CCCCCCC--chhhhcce----------EEEEeecceecCCCCccCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDT----------SNVYGPH--TNEILLAR----------VKLTTKFGIRYEDGKYSYCGD 79 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg~g--~~e~~~g~----------~~i~tK~~~~~~~~~~~~~~~ 79 (208)
+.+...+..+.+.+.|+..||- ...+|.+ ..-..+.+ +-|+.|+...+ +.+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~-------~~~ 136 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW-------DDS 136 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC-------T--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc-------ccc
Confidence 4566777777777789999992 2223311 01111111 56666665443 223
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEee
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPI--EVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 156 (208)
++...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--|+=.+ ++.+++.+.++....+-+|+
T Consensus 137 ~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 444443 445667777 789999976443322 45688888888877776665444 67788888887756666666
No 253
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=33.33 E-value=1.6e+02 Score=20.73 Aligned_cols=63 Identities=17% Similarity=0.043 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
+.+.+.+.+++++.|+..+.+.-++-.+-.++...+-....+..+++. +-+-.|+.++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 578999999999999999999888888888876654333333333221 344556777777655
No 254
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.32 E-value=2.7e+02 Score=23.38 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=25.6
Q ss_pred cHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCCC
Q 040616 168 EIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGCI 207 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~~ 207 (208)
++.++.+...+.++...|.-.|-++.-..+.++|+++|+.
T Consensus 241 ~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~ 280 (352)
T cd03325 241 DFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVA 280 (352)
T ss_pred HHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCc
Confidence 4555555666777777776555555555667777777753
No 255
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=33.12 E-value=1.1e+02 Score=26.49 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCccc
Q 040616 116 TIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 116 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
.-+.+..|.++|.--..|+.+-+-...+.+....-..+.+-+|++..........+..++.++.|.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45677889999999999999877666666666555677788999998865568888999999999999999875
No 256
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=33.10 E-value=1.3e+02 Score=23.26 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccC-cCCC
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWS-LRSR 163 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~ 163 (208)
+.+-+.|.. .-..+..+.++. .-+...+|.+.|.. -+-..-.+.+.+.++++-....+.-+... .-..
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 334444444 446787777753 12234556667774 45444457788888887544333333322 1111
Q ss_pred CccccHHHHHHHhCCcEEEcccCcccc
Q 040616 164 DVEEEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 164 ~~~~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
.....++++|++.||..+.+|-++...
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhHHHhhhccccceEEEEEecccc
Confidence 134489999999999999999988765
No 257
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=33.09 E-value=42 Score=28.85 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=30.2
Q ss_pred EEEEeecceecCC------CCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC
Q 040616 59 VKLTTKFGIRYED------GKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK 110 (208)
Q Consensus 59 ~~i~tK~~~~~~~------~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~ 110 (208)
+||.||+..+-.. .++....-.+.||+.+.+.|++-|+....+|++-+.+..
T Consensus 145 yfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 145 YFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp EEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred EEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 8999998753211 112222234567888999999999999999999887654
No 258
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=33.04 E-value=1.5e+02 Score=24.73 Aligned_cols=92 Identities=17% Similarity=0.088 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEeeC--cccHHHHHHHhhcCCccE
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-KIPIEVTIGELKRLVEEGKIKHIDLS--EASASTIRRAHTIHPITV 153 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~ 153 (208)
+.-.+++.+.++..-++|+...+.+-+--...+ ..--..+-+.|++|.++| ++.|=|. .|..++++-+.+.
T Consensus 203 dpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~ei----- 276 (316)
T PF00762_consen 203 DPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYEI----- 276 (316)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCCC-----
T ss_pred CChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHHH-----
Confidence 345677888888888999877655544432222 111124677888999999 5555543 3444444444321
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
+-+.-+.++++|+.-..+-|-
T Consensus 277 ------------die~re~~~~~G~~~~~~ip~ 297 (316)
T PF00762_consen 277 ------------DIEYRELAEEAGGEEFVRIPC 297 (316)
T ss_dssp ------------CCHHHHHHHHHTCCEEEE---
T ss_pred ------------HHHHHHHHHHcCCceEEEeCC
Confidence 235577788888866655554
No 259
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.03 E-value=2.6e+02 Score=22.57 Aligned_cols=107 Identities=14% Similarity=0.023 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEE
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVV 154 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 154 (208)
...+.++--+..+-..+-+++++|-|=.+.++... .+..+++++.++|+++|.+- +=+|+-++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~v 148 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAV 148 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 35677777777888889999999999888876543 35789999999999999854 33567787777777766 34555
Q ss_pred eeccCcCCCC---ccccHHHHHHHh-CCcEEEcc
Q 040616 155 RLEWSLRSRD---VEEEIVPTCREL-GIGIVAYS 184 (208)
Q Consensus 155 q~~~~~~~~~---~~~~~l~~~~~~-gi~v~a~~ 184 (208)
+---.|.-.. ...++++..++. ++.|++-.
T Consensus 149 mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~eg 182 (248)
T cd04728 149 MPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDA 182 (248)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeC
Confidence 3311222211 123566666664 78887643
No 260
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=33.02 E-value=20 Score=31.59 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCcceEeeCcccHHHHHHHhhcC-CccEEeeccCcCCCCccccHHHHHHHhCCc
Q 040616 127 GKIKHIDLSEASASTIRRAHTIH-PITVVRLEWSLRSRDVEEEIVPTCRELGIG 179 (208)
Q Consensus 127 G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~ 179 (208)
+.+|.+|+..++.+.+.++.+.. .-+..+....++....+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 45788888888888887776652 234445555554443344677777777764
No 261
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=33.02 E-value=2.3e+02 Score=21.83 Aligned_cols=68 Identities=12% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHH-HHHHHcCCcceEeeCcccHHHHHHHhhcCC-c------------------cEEeeccCcCCCCccccHHHHH
Q 040616 114 EVTIGEL-KRLVEEGKIKHIDLSEASASTIRRAHTIHP-I------------------TVVRLEWSLRSRDVEEEIVPTC 173 (208)
Q Consensus 114 ~~~~~~l-~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~------------------~~~q~~~~~~~~~~~~~~l~~~ 173 (208)
.+.++.+ ..+.+.|.-..+=++.|+.+.+..+.+..| + +.+.+++.. ...++++.+
T Consensus 111 ~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~ 186 (220)
T cd08579 111 PDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYST----LNKEFIRQA 186 (220)
T ss_pred HHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhh----cCHHHHHHH
Confidence 3444444 334456666677788899988887765422 1 111111111 234789999
Q ss_pred HHhCCcEEEccc
Q 040616 174 RELGIGIVAYSL 185 (208)
Q Consensus 174 ~~~gi~v~a~~p 185 (208)
+++|+.+.+|..
T Consensus 187 ~~~G~~v~~wtv 198 (220)
T cd08579 187 HQNGKKVYVWTV 198 (220)
T ss_pred HHCCCEEEEEcC
Confidence 999999999964
No 262
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=32.71 E-value=2.5e+02 Score=22.22 Aligned_cols=99 Identities=11% Similarity=0.192 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc------ceEeeCccc-HHHHHHHhhcCCccE
Q 040616 81 AYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKI------KHIDLSEAS-ASTIRRAHTIHPITV 153 (208)
Q Consensus 81 ~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i------r~iGvs~~~-~~~l~~~~~~~~~~~ 153 (208)
......++...+--+...|+-+++-..+......|.+...++|.+.|.- .+-|+++.+ .-+..+......+.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 4456667777777777889999999887778889999999999999964 455555532 123444444455655
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
+-=+|| -+.-+=.|+.+||.-+++..
T Consensus 156 ItQ~FH------ceRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 156 ITQRFH------CERALFIARQMGIDAICFAA 181 (235)
T ss_pred Eecccc------cHHHHHHHHHhCCceEEecC
Confidence 544444 34567789999988887543
No 263
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=32.64 E-value=1e+02 Score=23.66 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=25.9
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHH
Q 040616 98 CIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTI 142 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 142 (208)
.+|.++||..++ .+..+.+.+......++.+|+++....++
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378999997542 22334443333456889999998765544
No 264
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=32.60 E-value=1.5e+02 Score=20.70 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=33.4
Q ss_pred cccHHHHHHHhhcC-CccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCc
Q 040616 136 EASASTIRRAHTIH-PITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 136 ~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
..+.+.+..+.... +|+++-+--..-.+....++.++++++||++..+..-+
T Consensus 39 ~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 39 DITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred hCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 34566666665543 46666654444333334588999999999999876543
No 265
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=32.58 E-value=3.1e+02 Score=23.41 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=64.4
Q ss_pred EEEEeecceecC-------CCCccCCCChHHHHHHHHHHHHHcCCC---ccc-EEEeecCCCCCCHHHHHHHHHHHHH-c
Q 040616 59 VKLTTKFGIRYE-------DGKYSYCGDPAYLRAACEASLKCLDVD---CID-LYYQHRIDTKIPIEVTIGELKRLVE-E 126 (208)
Q Consensus 59 ~~i~tK~~~~~~-------~~~~~~~~~~~~i~~~~~~sL~~L~~d---~iD-l~~lh~~~~~~~~~~~~~~l~~l~~-~ 126 (208)
+-|+|-+|..-. .+....+.+..+|-.|+....++++.. .+. ++++---+|..-++.+..+++-+.+ .
T Consensus 103 lCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~ 182 (349)
T COG0820 103 LCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDE 182 (349)
T ss_pred EEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhcCcc
Confidence 667777665432 123567999999999999999999864 243 3333333444456778888887773 3
Q ss_pred CC--c-ceEeeCccc-HHHHHHHhhcCCccEEeeccCcCC
Q 040616 127 GK--I-KHIDLSEAS-ASTIRRAHTIHPITVVRLEWSLRS 162 (208)
Q Consensus 127 G~--i-r~iGvs~~~-~~~l~~~~~~~~~~~~q~~~~~~~ 162 (208)
|. . |+|-+|+-. ...|.++.+...-...++..|..+
T Consensus 183 G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~n 222 (349)
T COG0820 183 GLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPN 222 (349)
T ss_pred cccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCC
Confidence 32 1 778888755 456777664322234455555433
No 266
>PRK10508 hypothetical protein; Provisional
Probab=32.55 E-value=1.3e+02 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLV 124 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 124 (208)
--+|+.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 35788999999999999998776 333332 34555555555443
No 267
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.50 E-value=2.8e+02 Score=22.68 Aligned_cols=122 Identities=12% Similarity=0.072 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHH---cCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEeeCc----ccHHHHHHHhhcC
Q 040616 78 GDPAYLRAACEASLKC---LDVDCIDLYYQHRIDT-KIPIEVTIGELKRLVEEGKIKHIDLSE----ASASTIRRAHTIH 149 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~---L~~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~ 149 (208)
.++++..+.+.+.++. .|. .+.+.+-+...+ ..+.+.+.+..+++.+.| +..|.++. .+|.++.++++..
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHH
Confidence 4556665555555543 343 466666663322 346677788888888888 67888885 4677766666541
Q ss_pred --CccEEeeccCcCCCCc-cccHHHHHHHhCCcEEEcccCcccccCCCCCcccch
Q 040616 150 --PITVVRLEWSLRSRDV-EEEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLS 201 (208)
Q Consensus 150 --~~~~~q~~~~~~~~~~-~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a 201 (208)
...-+.+.+|.-+..- .-.-.-.+-+.|+..+--+..+-|--+++....+++
T Consensus 186 ~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v 240 (280)
T cd07945 186 VKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVI 240 (280)
T ss_pred HhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHH
Confidence 1111234455444321 112333456778888876666666666666554444
No 268
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.41 E-value=3.7e+02 Score=24.13 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=50.4
Q ss_pred cccEEEeecCCCCCCH----HHHHHHHHH-H--------------HHcCCcceEeeCc------ccHHHHHHHhhcCCcc
Q 040616 98 CIDLYYQHRIDTKIPI----EVTIGELKR-L--------------VEEGKIKHIDLSE------ASASTIRRAHTIHPIT 152 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~----~~~~~~l~~-l--------------~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~ 152 (208)
-++++.+|.|.....- +.+++++-+ + ...++|.-||.++ .+...++++++...+.
T Consensus 116 ~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 116 DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 3789999999665321 222332221 1 1246688898774 3456677777765555
Q ss_pred EEee----------------ccCcCC-CCccccHHHHHH-HhCCcEEEcccCcc
Q 040616 153 VVRL----------------EWSLRS-RDVEEEIVPTCR-ELGIGIVAYSLLGR 188 (208)
Q Consensus 153 ~~q~----------------~~~~~~-~~~~~~~l~~~~-~~gi~v~a~~pl~~ 188 (208)
++.+ .+|+.. ++....+-++.+ +.|++++...|++-
T Consensus 196 vn~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi 249 (513)
T CHL00076 196 INQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI 249 (513)
T ss_pred EEEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH
Confidence 5422 222222 211223555555 45899888778764
No 269
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.31 E-value=2e+02 Score=24.75 Aligned_cols=77 Identities=9% Similarity=-0.015 Sum_probs=53.5
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEeeCcccHHHHHHHhhcCCc----cEEeeccCcCCC-CccccHHHH
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK-HIDLSEASASTIRRAHTIHPI----TVVRLEWSLRSR-DVEEEIVPT 172 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~~~~~~-~~~~~~l~~ 172 (208)
+++.++-.|-+. +-++.+.+|++...+- +.|=|-++...+.++++..-. +++|+...-.-- ..-..+.+.
T Consensus 231 ~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~l 306 (385)
T cd03326 231 YGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDV 306 (385)
T ss_pred cCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHH
Confidence 456666655332 2366777787776553 666677889999999887655 899988775432 113478999
Q ss_pred HHHhCCc
Q 040616 173 CRELGIG 179 (208)
Q Consensus 173 ~~~~gi~ 179 (208)
|+.+|+.
T Consensus 307 A~a~gi~ 313 (385)
T cd03326 307 LEAHGWS 313 (385)
T ss_pred HHHcCCC
Confidence 9999997
No 270
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers. These are small, diffusible molecules used as communication signals in a large variety of proteobacteria. It is almost always found in association with the DNA-binding LuxR domain (IPR000792 from INTERPRO). The autoinducer binding domain forms the N-terminal region of the protein, while the DNA-binding domain forms the C-terminal region. In most cases, binding of AHL by this N-terminal domain leads to unmasking of the DNA-binding domain, allowing it to bind DNA and activate transcription []. In rare cases, some LuxR proteins such as EsaR, act as repressors []. In these proteins binding of AHL to this domain leads to inactivation of the protein as a transcriptional regulator. A large number of processes have been shown to be regulated by LuxR proteins, including bioluminescence, production of virulence factors in plant and animal pathogens, antibiotic production and plasmid transfer. Structural studies of TraR from Agrobacterium tumefaciens [, ] show that the functional protein is a homodimer. Binding of the cognate AHL is required for protein folding, resistance to proteases and dimerisation. The autoinducer binding domain binds its cognate AHL in an alpha/beta/alpha sandwich and provides an extensive dimerisation surface, though residues from the C-terminal region also make some contribution to dimerisation. The autoinducer binding domain is also required for interaction with RpoA, allowing transcription to occur []. There are some proteins which consist solely of the autoinducer binding domain. The function of these is not known, but TrlR from Agrobacterium has been shown to inhibit the activity of TraR by the formation of inactive heterodimers [].; PDB: 3SZT_A 1H0M_A 1L3L_B 2Q0O_B 2UV0_F 3IX8_A 3IX4_C 3IX3_A 3JPU_D 3QP8_A ....
Probab=32.23 E-value=1.8e+02 Score=20.30 Aligned_cols=24 Identities=17% Similarity=-0.047 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEE
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLY 102 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~ 102 (208)
+.+.+.+.+.+.++.+|.+++=+.
T Consensus 1 t~~~l~~~l~~~~~~~Gf~~~~~~ 24 (149)
T PF03472_consen 1 TEDELWDLLERLAARLGFDRFAYG 24 (149)
T ss_dssp SHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999998877666
No 271
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=32.22 E-value=3.1e+02 Score=23.07 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCC--Cchhhhcce--------------------E----EEEeecceec---C--
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGP--HTNEILLAR--------------------V----KLTTKFGIRY---E-- 70 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~~e~~~g~--------------------~----~i~tK~~~~~---~-- 70 (208)
.++...++-+.++++|.+.+-|...+.. +..|..-.+ . +|..-+++.. .
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 3567888889999999999988765431 112221111 1 4444444332 1
Q ss_pred ---CCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCC
Q 040616 71 ---DGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRID 108 (208)
Q Consensus 71 ---~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~ 108 (208)
.+.+....+.+.+.+..++.|+.+.-.-+|++.+-...
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip 171 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIP 171 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecC
Confidence 13345566777888888888888876679999998753
No 272
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=32.20 E-value=1.5e+02 Score=24.18 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEee
Q 040616 118 GELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 118 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
++++++++.-.-+.||++.++.+++.++.+. ..+.+++
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~-gaD~I~l 209 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEA-GADILQL 209 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc-CCCEEEE
Confidence 3444444332223466666666666665532 2345544
No 273
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.16 E-value=47 Score=27.46 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=14.3
Q ss_pred ccHHHHHHHhCCcEEE
Q 040616 167 EEIVPTCRELGIGIVA 182 (208)
Q Consensus 167 ~~~l~~~~~~gi~v~a 182 (208)
.+++++|+++||.|+-
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4899999999999984
No 274
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=32.09 E-value=4.1e+02 Score=24.48 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCC-------Cchh---hhcce------------EEEEeecceecCCCCccCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGP-------HTNE---ILLAR------------VKLTTKFGIRYEDGKYSYCGD 79 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------g~~e---~~~g~------------~~i~tK~~~~~~~~~~~~~~~ 79 (208)
.++...++-+..+++|-+.+.|.....+ |..+ ++... ++|+.-+++....+ .....+
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~-~~~~~~ 119 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRG-PLGDIS 119 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCC-CCCCCC
Confidence 4566778778888999999998766542 1111 11111 56777777644221 111246
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecC
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRI 107 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~ 107 (208)
.+.+++......+.|.-.-+|++++-..
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~ 147 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETF 147 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 7788777777777775556899988764
No 275
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=31.97 E-value=2.4e+02 Score=25.65 Aligned_cols=76 Identities=14% Similarity=0.028 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCcc---EEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 109 TKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPIT---VVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 109 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~---~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
...+..++.+.+-+.++..+|+.||+-++...++..+++...+. +-|.-.++-.+ -..++..-..|.-+..-.|
T Consensus 408 ~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp 484 (546)
T COG4626 408 DLIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNP 484 (546)
T ss_pred CccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCc
Confidence 45667889999999999999999999999999988888874433 33333322222 2445555555655555555
Q ss_pred Cc
Q 040616 186 LG 187 (208)
Q Consensus 186 l~ 187 (208)
+.
T Consensus 485 ~m 486 (546)
T COG4626 485 LM 486 (546)
T ss_pred HH
Confidence 53
No 276
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.90 E-value=3.5e+02 Score=23.58 Aligned_cols=111 Identities=12% Similarity=-0.052 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc---c-cHHHHHHHhhcCCcc
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE---A-SASTIRRAHTIHPIT 152 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~-~~~~l~~~~~~~~~~ 152 (208)
..+++.+.+.+++.+.....+ .+-+.+-...+......+.+.++.+++.|.--+|+.+| + +.+.++++.+.. ++
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~-~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~g-ld 130 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGR-DTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNG-VR 130 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCC-CCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcC-CC
Confidence 467888888888888765432 56666665544445577888899999989877777454 3 556677776542 34
Q ss_pred EEeeccCcCCCC--------cc-c---cHHHHHHHhCCcEEEcccCcccc
Q 040616 153 VVRLEWSLRSRD--------VE-E---EIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 153 ~~q~~~~~~~~~--------~~-~---~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
.+.+..+-.++. .. . +.++++.+ ++.+++..|+.-|.
T Consensus 131 ~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi 179 (404)
T TIGR03278 131 EVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV 179 (404)
T ss_pred EEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc
Confidence 555555544322 11 1 33444444 46777777777664
No 277
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=43 Score=31.05 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCcccEEEeecC-CCCCCHHHHHHHHHHHHHcCCcceE
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRI-DTKIPIEVTIGELKRLVEEGKIKHI 132 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~G~ir~i 132 (208)
.-++-.-.++|--+.--|+++|.. |.++.+.-+-+-+.+|+++||=--+
T Consensus 788 agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL 837 (867)
T KOG2281|consen 788 AGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYEL 837 (867)
T ss_pred chhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCceEE
Confidence 344445556665444459999975 6777888888889999999985433
No 278
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=31.48 E-value=1.5e+02 Score=23.74 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCCeEeC
Q 040616 24 SCMIALIHHAIDSGITVLDT 43 (208)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dt 43 (208)
++....++.|++.|...|++
T Consensus 13 ENTl~af~~A~~~Gad~iE~ 32 (258)
T cd08573 13 ENTLAAFRQAKKNGADGVEF 32 (258)
T ss_pred ccHHHHHHHHHHcCCCEEEE
Confidence 55778899999999998863
No 279
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=31.33 E-value=2.7e+02 Score=22.11 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=77.3
Q ss_pred HHHHHHHHHHCCCCeEeCCCCCCC---Cchhhhcce---------------EEEEeecceecCCCCccCCCChHHHHHHH
Q 040616 26 MIALIHHAIDSGITVLDTSNVYGP---HTNEILLAR---------------VKLTTKFGIRYEDGKYSYCGDPAYLRAAC 87 (208)
Q Consensus 26 ~~~~l~~A~~~Gi~~~DtA~~Yg~---g~~e~~~g~---------------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 87 (208)
..+++++|.+.|+..|-+.++... +..+..+-. +++-.-+.... .......
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~-----------~~~~d~~ 86 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILP-----------DGSLDFL 86 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecC-----------CCCcccc
Confidence 456689999999998877666543 222222211 22222222111 1111122
Q ss_pred HHHHHHcCCCcccEEEeecCC-CCCCHHHHHHHHHHHHHcCCcceEeeCcc-------------cHHHHHHHhhcCCccE
Q 040616 88 EASLKCLDVDCIDLYYQHRID-TKIPIEVTIGELKRLVEEGKIKHIDLSEA-------------SASTIRRAHTIHPITV 153 (208)
Q Consensus 88 ~~sL~~L~~d~iDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------------~~~~l~~~~~~~~~~~ 153 (208)
+..+..| | .=+..+|.+. .+.......+.+..+...+.|.-||=-+. ..+.+.++++... ..
T Consensus 87 ~~~~~~l--D-~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~a 162 (237)
T COG1387 87 DEILKEL--D-YVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG-KA 162 (237)
T ss_pred hhhHhhc--C-EEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-cE
Confidence 2333333 3 2256678752 33445667888889999999988885543 2233333333322 34
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEE
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~ 181 (208)
+.++-++-...+...++..|++.|+.+.
T Consensus 163 leins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 163 LEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred EeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 4454444444446689999999987766
No 280
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.26 E-value=3.3e+02 Score=23.15 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHcCCcceEeeCc----ccHHHHHHHhhcC--CccEEeeccCcCCCC--ccccHHHHHHHhCCcEEE
Q 040616 111 IPIEVTIGELKRLVEEGKIKHIDLSE----ASASTIRRAHTIH--PITVVRLEWSLRSRD--VEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~--~~~~~q~~~~~~~~~--~~~~~l~~~~~~gi~v~a 182 (208)
.+.+.+.+..+++.+.| +..|.+++ ..|+++.++++.. ... +.+.+|.-+.. .-...+... +.|+..+-
T Consensus 138 ~~~~~l~~~~~~~~~~g-~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~-~aGa~~vd 214 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAG-ADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGV-KAGAEQVH 214 (363)
T ss_pred CCHHHHHHHHHHHHhCC-CCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHH-HCCCCEEE
Confidence 34566666666776666 45677665 3466666555541 111 33444443332 111233333 45888877
Q ss_pred cccCcccccCCCCCccc
Q 040616 183 YSLLGRGFLSSGPKLIH 199 (208)
Q Consensus 183 ~~pl~~G~l~~~~~~~~ 199 (208)
-+..+-|--.++..+.+
T Consensus 215 ~s~~GlGeraGN~~lE~ 231 (363)
T TIGR02090 215 VTVNGIGERAGNAALEE 231 (363)
T ss_pred EEeeccccccccccHHH
Confidence 66666665566655544
No 281
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.15 E-value=2.3e+02 Score=21.39 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcce-EeeCcccHHHHHHHhhcCCccEEee
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKH-IDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
.++..+.+.++. +.+.|.|++.+-+...+... ......+.++++++...+.- +.+-..+.....+.......+.+|+
T Consensus 8 ~~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 344555555543 45677777777533322211 11133455555655432221 5554445554444444555677777
Q ss_pred ccCcCCCCccccHHHHHHHhCCcE
Q 040616 157 EWSLRSRDVEEEIVPTCRELGIGI 180 (208)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~gi~v 180 (208)
....... ....++.++++|+.+
T Consensus 86 h~~~~~~--~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 86 HPEASEH--IHRLLQLIKDLGAKA 107 (210)
T ss_pred ccCCchh--HHHHHHHHHHcCCcE
Confidence 5543211 235666666666553
No 282
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=30.88 E-value=2e+02 Score=24.11 Aligned_cols=47 Identities=6% Similarity=-0.219 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK 128 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 128 (208)
..+.+.+.+-+++. ..+++.. +.+..-++.. ..+..+.++.+++.|.
T Consensus 36 ~l~~e~~~~ii~~~-~~~g~~~---v~~~GGEPll-~~~~~~ii~~~~~~g~ 82 (358)
T TIGR02109 36 ELTTEEWTDVLTQA-AELGVLQ---LHFSGGEPLA-RPDLVELVAHARRLGL 82 (358)
T ss_pred CCCHHHHHHHHHHH-HhcCCcE---EEEeCccccc-cccHHHHHHHHHHcCC
Confidence 45666666666553 4455433 2333322221 2334555556666664
No 283
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=30.82 E-value=45 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCCeEeCCCCCC
Q 040616 27 IALIHHAIDSGITVLDTSNVYG 48 (208)
Q Consensus 27 ~~~l~~A~~~Gi~~~DtA~~Yg 48 (208)
...+..+++.|+|+||.--.++
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~ 52 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDG 52 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccC
Confidence 3467889999999998654443
No 284
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=30.79 E-value=54 Score=22.14 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 83 LRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 83 i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
....+-.-|.+.|.||.=.+.-.. ..+.+++.+.+++|.+.|+|..+.-+.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 344566667777877766554433 467899999999999999999887553
No 285
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.74 E-value=2.9e+02 Score=22.36 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEE
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVV 154 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 154 (208)
...+.++.-+..+-..+-+++++|-|=.+.++... .+..+++++.++|.++|.+- +=+|+-++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 36677777777888889999999999888876543 35789999999999999854 33567787777777766 34555
Q ss_pred eeccCcCCCC---ccccHHHHHHHh-CCcEEEcc
Q 040616 155 RLEWSLRSRD---VEEEIVPTCREL-GIGIVAYS 184 (208)
Q Consensus 155 q~~~~~~~~~---~~~~~l~~~~~~-gi~v~a~~ 184 (208)
+---.|.-.. ...++++..++. ++.|++-.
T Consensus 149 mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIvea 182 (250)
T PRK00208 149 MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDA 182 (250)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeC
Confidence 3311222111 123567777764 78887643
No 286
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.58 E-value=66 Score=16.83 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHCCCC
Q 040616 24 SCMIALIHHAIDSGIT 39 (208)
Q Consensus 24 ~~~~~~l~~A~~~Gi~ 39 (208)
++...++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4578899999999876
No 287
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.51 E-value=1.9e+02 Score=24.95 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEEeeccCcCCCCc-cccHHHHHHHhC-CcEEEcccCccc
Q 040616 113 IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVVRLEWSLRSRDV-EEEIVPTCRELG-IGIVAYSLLGRG 189 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~l~~~~~~g-i~v~a~~pl~~G 189 (208)
+..+.+.++++....-|...=+-..+.+.++++++. .+..+++.+-||...-. -..+.+.|+++| +.++.=..++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 577888888765555555444444577888888875 56778888888876642 237899999999 999988888776
Q ss_pred ccC
Q 040616 190 FLS 192 (208)
Q Consensus 190 ~l~ 192 (208)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 544
No 288
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=30.32 E-value=1.9e+02 Score=20.13 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=23.9
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCCcceEeeC
Q 040616 105 HRIDTKIPIEVTIGELKRLVEEGKIKHIDLS 135 (208)
Q Consensus 105 h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 135 (208)
=..|...++..+.+.|+.+++.|. ..+++.
T Consensus 89 i~aD~~~~~~~vv~v~d~~~~~G~-~~v~l~ 118 (121)
T TIGR02804 89 LKSDKEAKFQDFVTITDMLKAKEH-ENVQIV 118 (121)
T ss_pred EEeCCCCCHhHHHHHHHHHHHcCC-CeEEEE
Confidence 345778889999999999999994 446664
No 289
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.30 E-value=3.1e+02 Score=26.33 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEeeCcccHHHHHHHhhcCCccEEee
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKHIDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
+.+.+++.++...........-+|+|...+.. ..+.+.+|.+..++ ..++.|-++|.....+..+.+ -|.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~L--T~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHML--TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhC--CHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEE
Confidence 45566666665443333344568888766433 24567777777766 589999999864333333322 35667
Q ss_pred ccCcCCCCccc-cHHHHHHHhCCc
Q 040616 157 EWSLRSRDVEE-EIVPTCRELGIG 179 (208)
Q Consensus 157 ~~~~~~~~~~~-~~l~~~~~~gi~ 179 (208)
+|..+....-. -+...|++.||.
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCC
Confidence 77776653111 233445555654
No 290
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=30.29 E-value=2.4e+02 Score=21.17 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCC
Q 040616 87 CEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGK 128 (208)
Q Consensus 87 ~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ 128 (208)
++..++++.- =+++++|..+... ..+.+-..+..|+++|.
T Consensus 142 ~~~~~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 142 VDRVVKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred HHHHHhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 3444555543 4799999643221 23334455567777774
No 291
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=30.23 E-value=97 Score=23.40 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
+.+++-+++.+++++| |++|.||-
T Consensus 132 d~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 132 DEDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred CHHHHHHHHHHHHhCC-CCEEEEEC
Confidence 3567788888888887 89999875
No 292
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=30.18 E-value=1.7e+02 Score=23.52 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
..+.++--+..+-+.+-+++++|-|=.+.++... .+..+++++-+.|+++|-+-.= -++-++-..+++.+. ....+|
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~akrL~d~-GcaavM 149 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPVLAKRLEDA-GCAAVM 149 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HHHHHHHHHT-T-SEBE
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHHHHHHHHHC-CCCEEE
Confidence 5667777778888889999999998888766443 3567999999999999975322 234455555555554 334444
Q ss_pred eccCcCCCC----ccccHHHHHHHhCCcEEEcccCc
Q 040616 156 LEWSLRSRD----VEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 156 ~~~~~~~~~----~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
---+|.-.. ....+-..+++.+++|+.-.=++
T Consensus 150 PlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG 185 (247)
T PF05690_consen 150 PLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIG 185 (247)
T ss_dssp EBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---
T ss_pred ecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCC
Confidence 433333221 11234445556689888754333
No 293
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=30.13 E-value=1.8e+02 Score=19.86 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=53.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHCCCCe-EeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHH
Q 040616 8 LRCMGMFAFYGPPKPESCMIALIHHAIDSGITV-LDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAA 86 (208)
Q Consensus 8 ~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 86 (208)
+||.++ =++.++++..+.|+..+.+|.+. +.-|+. ...-+...-+.|+... ...++..+...
T Consensus 3 ~~t~sy----lp~lt~~~i~~QI~yll~qG~~~~lE~ad~------~~~~~~yW~mwklP~f-------~~~d~~~Vl~e 65 (99)
T cd03527 3 FETFSY----LPPLTDEQIAKQIDYIISNGWAPCLEFTEP------EHYDNRYWTMWKLPMF-------GCTDPAQVLRE 65 (99)
T ss_pred cccccc----CCCCCHHHHHHHHHHHHhCCCEEEEEcccC------CCCCCCEEeeccCCCC-------CCCCHHHHHHH
Confidence 455553 23446788999999999999883 322211 1122224455555432 14678899999
Q ss_pred HHHHHHHcCCCcccEEEeec
Q 040616 87 CEASLKCLDVDCIDLYYQHR 106 (208)
Q Consensus 87 ~~~sL~~L~~d~iDl~~lh~ 106 (208)
++..++.-.-+||=|+-+..
T Consensus 66 i~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 66 IEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred HHHHHHHCCCCeEEEEEEeC
Confidence 99999999888887776543
No 294
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=30.03 E-value=76 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=26.5
Q ss_pred cccccccccC---------------CCCCCCHHHHHHHHHHHHHCCCCeEeCCCCC
Q 040616 7 GLRCMGMFAF---------------YGPPKPESCMIALIHHAIDSGITVLDTSNVY 47 (208)
Q Consensus 7 g~G~~~~~~~---------------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y 47 (208)
|||.|++|.. |. .-++....+.++.|.++|+.. =.-+.|
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGfH-AGDp~~M~rtV~lA~e~gV~I-GAHPgy 66 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGFH-AGDPLTMRRTVRLAKENGVAI-GAHPGY 66 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhccc-CCCHHHHHHHHHHHHHcCCee-ccCCCC
Confidence 6888988851 22 225677889999999999873 233445
No 295
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.00 E-value=1.9e+02 Score=20.02 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHH
Q 040616 96 VDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRE 175 (208)
Q Consensus 96 ~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~ 175 (208)
...+|+..+-.| .+.+.+.++++.+.| ++++=+-. . .. +++++++|++
T Consensus 53 p~~iDlavv~~~-----~~~~~~~v~~~~~~g-~~~v~~~~--------------------g----~~--~~~~~~~a~~ 100 (116)
T PF13380_consen 53 PEPIDLAVVCVP-----PDKVPEIVDEAAALG-VKAVWLQP--------------------G----AE--SEELIEAARE 100 (116)
T ss_dssp SST-SEEEE-S------HHHHHHHHHHHHHHT--SEEEE-T--------------------T----S----HHHHHHHHH
T ss_pred CCCCCEEEEEcC-----HHHHHHHHHHHHHcC-CCEEEEEc--------------------c----hH--HHHHHHHHHH
Confidence 466788777643 466777777777776 33322211 1 22 5689999999
Q ss_pred hCCcEEE
Q 040616 176 LGIGIVA 182 (208)
Q Consensus 176 ~gi~v~a 182 (208)
+|+.++.
T Consensus 101 ~gi~vig 107 (116)
T PF13380_consen 101 AGIRVIG 107 (116)
T ss_dssp TT-EEEE
T ss_pred cCCEEEe
Confidence 9999886
No 296
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=29.96 E-value=3.7e+02 Score=23.32 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=65.1
Q ss_pred HHHHHHHHHHH--------HHcCCCcccEEEeecCCCC-----CCHHHHHHHHHHHHHcCCc-ceEeeC---cccHHHHH
Q 040616 81 AYLRAACEASL--------KCLDVDCIDLYYQHRIDTK-----IPIEVTIGELKRLVEEGKI-KHIDLS---EASASTIR 143 (208)
Q Consensus 81 ~~i~~~~~~sL--------~~L~~d~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~i-r~iGvs---~~~~~~l~ 143 (208)
+.+++.++... ++...-.+|++.||.-..+ .+.++..+..++..+.=.+ --|+-| ..+++.++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHH
Confidence 55766666655 2222234789999875332 2345666666665443332 233333 56888999
Q ss_pred HHhhcC---CccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCccccc
Q 040616 144 RAHTIH---PITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFL 191 (208)
Q Consensus 144 ~~~~~~---~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l 191 (208)
++++.. ++-++-..... .-+.+.+.|+++|..+++++|..-+.+
T Consensus 208 aaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 208 KAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 988872 34332222111 134899999999999999999887644
No 297
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.95 E-value=1.2e+02 Score=26.24 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=12.8
Q ss_pred cHHHHHHHhCCcEEE
Q 040616 168 EIVPTCRELGIGIVA 182 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a 182 (208)
.+.+.|++||+-||+
T Consensus 182 ~i~elc~kh~v~VIS 196 (388)
T COG1168 182 KIAELCLRHGVRVIS 196 (388)
T ss_pred HHHHHHHHcCCEEEe
Confidence 788889999998885
No 298
>PLN02880 tyrosine decarboxylase
Probab=29.91 E-value=2e+02 Score=25.62 Aligned_cols=26 Identities=8% Similarity=-0.073 Sum_probs=19.4
Q ss_pred cccHHHHHHHhCCcEEEcccCccccc
Q 040616 166 EEEIVPTCRELGIGIVAYSLLGRGFL 191 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl~~G~l 191 (208)
-+++.+.|+++|+-+.+=..++++.+
T Consensus 258 l~eI~~i~~~~~iwlHVDaA~gg~~~ 283 (490)
T PLN02880 258 LLELGKIAKSNGMWFHVDAAYAGSAC 283 (490)
T ss_pred HHHHHHHHHHcCCEEEEehhhHHHHH
Confidence 55788888888888887777776643
No 299
>PRK10200 putative racemase; Provisional
Probab=29.90 E-value=2.8e+02 Score=21.87 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCcceEeeCcccHH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK------------IPIEVTIGELKRLVEEGKIKHIDLSEASAS 140 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 140 (208)
..+.+..++-++..-.+.+.++++.+.+|.++.. .+.....+.++.|.+.| ++.|-++.-++.
T Consensus 13 ~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah 87 (230)
T PRK10200 13 ESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMH 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHH
Confidence 3455667777777778888899999999997421 23445667777887777 688888654443
No 300
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.89 E-value=3.5e+02 Score=22.98 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=54.8
Q ss_pred ccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc-C---CcceEeeCcccH-HHHHHHhhc
Q 040616 74 YSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE-G---KIKHIDLSEASA-STIRRAHTI 148 (208)
Q Consensus 74 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G---~ir~iGvs~~~~-~~l~~~~~~ 148 (208)
...+.+..+|-.++...-+.++.....++++---+|...++.+.+++..+.+. | .-|.|-||+-.. ..+.++.+.
T Consensus 129 ~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~ 208 (342)
T PRK14465 129 FQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIEN 208 (342)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhh
Confidence 45677888999888876666665556666666445555568889998888764 2 346888887543 456666543
Q ss_pred CCccEEeeccC
Q 040616 149 HPITVVRLEWS 159 (208)
Q Consensus 149 ~~~~~~q~~~~ 159 (208)
.....+.+.+|
T Consensus 209 ~~~~~LaiSLh 219 (342)
T PRK14465 209 KEPYNFAISLN 219 (342)
T ss_pred ccCceEEEEec
Confidence 22223444443
No 301
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=29.69 E-value=2e+02 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHCCCCeEe
Q 040616 23 ESCMIALIHHAIDSGITVLD 42 (208)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~D 42 (208)
+++....++.|++.|+..|+
T Consensus 14 PENTl~Af~~A~~~Gad~iE 33 (296)
T cd08559 14 PEHTLAAYALAIEMGADYIE 33 (296)
T ss_pred ccchHHHHHHHHHhCCCEEE
Confidence 36678889999999999876
No 302
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=29.67 E-value=52 Score=27.54 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCC-eEeCCCCCCCCchhhhcc------eEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCC
Q 040616 25 CMIALIHHAIDSGIT-VLDTSNVYGPHTNEILLA------RVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVD 97 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~~e~~~g------~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d 97 (208)
...+.|++....||. +||- -|....+..+- ++.++.-++.... -.++.+...-.-.-+|+...
T Consensus 211 ~~~~aL~r~~P~GIDiYfeN---VGG~~lDavl~nM~~~gri~~CG~ISqYN~-------~~~~~~~~l~~ii~Kr~~iq 280 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFEN---VGGKMLDAVLLNMNLHGRIAVCGMISQYNL-------ENPEGLHNLSTIIYKRIRIQ 280 (343)
T ss_pred CHHHHHHHhCCCcceEEEec---cCcHHHHHHHHhhhhccceEeeeeehhccc-------cCCccccchhhheeeeEEee
Confidence 355667777777877 4552 12111222222 2777777765442 22344444445555666554
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEe
Q 040616 98 CIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHID 133 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG 133 (208)
. ++.+.. ...+++.++.|..++++|||+++=
T Consensus 281 g--flv~d~---~d~~~k~ld~l~~~ikegKI~y~e 311 (343)
T KOG1196|consen 281 G--FLVSDY---LDKYPKFLDFLLPYIKEGKITYVE 311 (343)
T ss_pred e--EEeech---hhhhHHHHHHHHHHHhcCceEEeh
Confidence 4 222222 234578899999999999999763
No 303
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.48 E-value=2.8e+02 Score=24.11 Aligned_cols=112 Identities=14% Similarity=0.022 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHCCCCe-Ee-CCCC-CCCC-chhhhcc----eEEEEeecceecCCCCccCCCChHHHHHHHHHHHHH
Q 040616 22 PESCMIALIHHAIDSGITV-LD-TSNV-YGPH-TNEILLA----RVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKC 93 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~-~D-tA~~-Yg~g-~~e~~~g----~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 93 (208)
-.....++++.+-+.|++. ++ |... +.+. ..++..- .+.++-|.........+......+.+.+.++...+.
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~ 166 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES 166 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3456889999988889874 35 5432 3311 1333322 277877775322111111111225566666654442
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCccc
Q 040616 94 LDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEAS 138 (208)
Q Consensus 94 L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 138 (208)
..-++-++++...++.....++++.|.++ | +..+|+..|.
T Consensus 167 -~~v~~~ivlIPGiND~eel~~ti~~L~~l---g-~~~V~L~~y~ 206 (404)
T TIGR03278 167 -CEVHAASVIIPGVNDGDVLWKTCADLESW---G-AKALILMRFA 206 (404)
T ss_pred -CCEEEEEEEeCCccCcHHHHHHHHHHHHC---C-CCEEEEEecc
Confidence 22233444444433332333455544444 3 5578777765
No 304
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=29.46 E-value=2.8e+02 Score=21.72 Aligned_cols=156 Identities=20% Similarity=0.233 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhc-ce-EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC
Q 040616 19 PPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILL-AR-VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV 96 (208)
Q Consensus 19 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~-g~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 96 (208)
+..+.++..++.+.|.+.|+.-+-..+.|=. .+-+.+ |. +-++|=++.+. .....+.-...+++.++ +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v~-~a~~~l~~~~v~v~tVigFP~------G~~~~~~K~~E~~~Av~-~GA 84 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYVP-LAKELLKGTEVRICTVVGFPL------GASTTDVKLYETKEAIK-YGA 84 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHHH-HHHHHcCCCCCeEEEEeCCCC------CCCcHHHHHHHHHHHHH-cCC
Confidence 3457888999999999999988887776631 122223 22 66666666543 12333333444555554 699
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCc-ceE-eeCcccHHHHHHHhhc---CCccEEeec--cCcCCCCccc
Q 040616 97 DCIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKI-KHI-DLSEASASTIRRAHTI---HPITVVRLE--WSLRSRDVEE 167 (208)
Q Consensus 97 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-r~i-Gvs~~~~~~l~~~~~~---~~~~~~q~~--~~~~~~~~~~ 167 (208)
|-+|+++--..-...+...+.+.+.+.++. |+. +-| -.+-.+.+++.++.+. ...|+++.. |.+..-..++
T Consensus 85 dEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d 164 (211)
T TIGR00126 85 DEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVED 164 (211)
T ss_pred CEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH
Confidence 999998776543334567777777777764 543 322 1122445666665554 567889888 7654333222
Q ss_pred -cHHHHHHHhCCcEEE
Q 040616 168 -EIVPTCRELGIGIVA 182 (208)
Q Consensus 168 -~~l~~~~~~gi~v~a 182 (208)
.++...-...+++-+
T Consensus 165 v~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 165 VRLMRNTVGDTIGVKA 180 (211)
T ss_pred HHHHHHHhccCCeEEE
Confidence 223222223465555
No 305
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.36 E-value=3e+02 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNV 46 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 46 (208)
+.++..+++++|-..|-+|+|-|..
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad 49 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD 49 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC
Confidence 6678899999999999999998854
No 306
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.35 E-value=1.7e+02 Score=19.11 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhC--CcEEEcccCc
Q 040616 115 VTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELG--IGIVAYSLLG 187 (208)
Q Consensus 115 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~g--i~v~a~~pl~ 187 (208)
...+.++.+.+..-+..+..++ +.+++...+...+|+++-+.+++-... ..++++..++.+ +.++..+.-.
T Consensus 9 ~~~~~l~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~d~iiid~~~~~~~-~~~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 9 EIRELLEKLLERAGYEEVTTAS-SGEEALELLKKHPPDLIIIDLELPDGD-GLELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHHHTTEEEEEEES-SHHHHHHHHHHSTESEEEEESSSSSSB-HHHHHHHHHHHTTTSEEEEEESST
T ss_pred HHHHHHHHHHHhCCCCEEEEEC-CHHHHHHHhcccCceEEEEEeeecccc-ccccccccccccccccEEEecCCC
Confidence 3455555555544444555444 566666666777899999998888764 336777777754 7777766543
No 307
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=29.24 E-value=3.5e+02 Score=25.66 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce-EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEE
Q 040616 24 SCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR-VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLY 102 (208)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~ 102 (208)
+-+.+++++|-+.|++.+-.=+.-....-.+.-.+ -++..|.-+ |-..--.+++..+--....+|.+
T Consensus 43 EIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~------------PV~AYL~ideii~iak~~~vdav 110 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLP------------PVGAYLAIDEIISIAKKHNVDAV 110 (1176)
T ss_pred cchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCC------------chhhhhhHHHHHHHHHHcCCCee
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc------CCccEEeeccCcCCCCccccHHHHHHHh
Q 040616 103 YQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI------HPITVVRLEWSLRSRDVEEEIVPTCREL 176 (208)
Q Consensus 103 ~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~~l~~~~~~ 176 (208)
---+ --+.|--+..+...+.| |++||=|.--.+.+-.-.+. ...-++-..=.|... -++-+++|+++
T Consensus 111 HPGY----GFLSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt--~~EA~eF~k~y 183 (1176)
T KOG0369|consen 111 HPGY----GFLSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITT--VEEALEFVKEY 183 (1176)
T ss_pred cCCc----cccccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCccc--HHHHHHHHHhc
Q ss_pred CCcEEEcccCccc
Q 040616 177 GIGIVAYSLLGRG 189 (208)
Q Consensus 177 gi~v~a~~pl~~G 189 (208)
|.++|-...+++|
T Consensus 184 G~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 184 GLPVIIKAAYGGG 196 (1176)
T ss_pred CCcEEEeecccCC
No 308
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=29.09 E-value=1.8e+02 Score=25.56 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCc-ceEeeCc---ccHHHHHHHhhc-CC---ccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCc
Q 040616 116 TIGELKRLVEEGKI-KHIDLSE---ASASTIRRAHTI-HP---ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 116 ~~~~l~~l~~~G~i-r~iGvs~---~~~~~l~~~~~~-~~---~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
+....+.++++|.. +++.+.+ .+.+.++++++. .. ++.+..+.....+ -+++...|++.||.+++=..-+
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HHHHHHHhCcCCcEEEeehhhh
Confidence 45666677788853 7888775 344566666655 22 3333333333444 5689999999999888755555
Q ss_pred cc
Q 040616 188 RG 189 (208)
Q Consensus 188 ~G 189 (208)
-|
T Consensus 222 vG 223 (428)
T KOG1549|consen 222 VG 223 (428)
T ss_pred cC
Confidence 55
No 309
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=29.09 E-value=3.5e+02 Score=22.73 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccE
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDL 101 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl 101 (208)
..+++|+.+-+.|| .+|.|..-.. ..+..+.- -+|.|...... ..+..++--.++++...++=|+ |.+
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~s~k-t~~Dvl~~s~~PviaSHSN~~a-----l~~h~RNl~D~qlkaI~~~gGv--Igv 220 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHLSDK-TFWDVLDLSKAPVVASHSNARA-----LVDHPRNLSDEQLKAIAETGGV--IGV 220 (313)
T ss_pred HHHHHHHHHHhcCC-EEEecccCCc-cHHHHHhccCCceEEecCCchh-----ccCCCCCCCHHHHHHHHhcCCE--EEE
Confidence 47899999999997 6898865321 23333332 45555544322 1122333345566666666554 444
Q ss_pred EEeecC-----CCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 102 YYQHRI-----DTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 102 ~~lh~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
.++-.. .+..++++..+.++.+++.+=+++||+.+
T Consensus 221 ~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 221 NFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred EeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 433322 23457899999999999999999999975
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=29.05 E-value=4.2e+02 Score=23.64 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc--eEeeCcccHHHHHHHhhc--CCccEE
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK--HIDLSEASASTIRRAHTI--HPITVV 154 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir--~iGvs~~~~~~l~~~~~~--~~~~~~ 154 (208)
.+....+.+-.-|+.++..++=++---.| .. .++-+..+++.++=.+- .+-+.+...+.+..+++. ..|-+.
T Consensus 164 ~y~~aEe~~i~eLk~~~kPfiivlN~~dp--~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFPv~ 239 (492)
T TIGR02836 164 DYVEAEERVIEELKELNKPFIILLNSTHP--YH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFPIL 239 (492)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEEECcCC--CC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCCce
Confidence 34556677777788888776655443333 22 12222223443332243 344445677777777765 445566
Q ss_pred eeccCc
Q 040616 155 RLEWSL 160 (208)
Q Consensus 155 q~~~~~ 160 (208)
++++++
T Consensus 240 Ei~~~~ 245 (492)
T TIGR02836 240 EINIDL 245 (492)
T ss_pred EEEeeC
Confidence 666665
No 311
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.05 E-value=3.3e+02 Score=22.41 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEe
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQ 104 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~l 104 (208)
-..++-+...++|+|..|....-. ..-+.++....+... ...+.+.++++++..-+.|+++ +.+
T Consensus 20 IVa~VT~~La~~~vNI~dls~~~~-----~~~~~F~m~~~~~~p-------~~~~~~~L~~~L~~l~~~l~l~----i~i 83 (286)
T PRK13011 20 IVAAVTGFLAEHGCYITELHSFDD-----RLSGRFFMRVEFHSE-------EGLDEDALRAGFAPIAARFGMQ----WEL 83 (286)
T ss_pred HHHHHHHHHHhCCCCEEEeeeeec-----CCCCeEEEEEEEecC-------CCCCHHHHHHHHHHHHHHhCcE----EEE
Confidence 355666666799999999775411 111223333333211 1356889999999999999876 234
Q ss_pred ecCCCC-------CCHHHHHHHHHHHHHcCCc--ceEee-CcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHH
Q 040616 105 HRIDTK-------IPIEVTIGELKRLVEEGKI--KHIDL-SEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTC 173 (208)
Q Consensus 105 h~~~~~-------~~~~~~~~~l~~l~~~G~i--r~iGv-s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~ 173 (208)
+.+... ......+++|-+..+.|.+ .-..| ||.. .+..+.+...+.+.+++....++. .+..++++.
T Consensus 84 ~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~--~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK13011 84 HDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP--DLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVV 161 (286)
T ss_pred eecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc--cHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence 433222 1123457888888888864 33443 6643 233334444555566655543332 234678889
Q ss_pred HHhCCcEEEcc
Q 040616 174 RELGIGIVAYS 184 (208)
Q Consensus 174 ~~~gi~v~a~~ 184 (208)
++.+.-++.-.
T Consensus 162 ~~~~~Dlivla 172 (286)
T PRK13011 162 EESGAELVVLA 172 (286)
T ss_pred HHhCcCEEEEe
Confidence 99887776533
No 312
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=28.95 E-value=1.9e+02 Score=23.69 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=38.0
Q ss_pred ccEEEeecCCCCCC---HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 99 IDLYYQHRIDTKIP---IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 99 iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
.++++|.-|....| ..++|+.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 47777777755554 3568999999999996 678899999999988855
No 313
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.86 E-value=3.6e+02 Score=22.89 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGK-IKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.++.+... .+-+.|.++|+++|.+-+ |.. .++-|+.+..+.+.+. .+-.+.+..+.+.++.+.+.. ++.+.
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG~---p~~---~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAGF---PIA---SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeC---CCC---ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEE
Confidence 44555444 455669999999999753 321 1233667777766554 444555666778888887763 34444
Q ss_pred eccC--cCC------CC------ccccHHHHHHHhCCcEE
Q 040616 156 LEWS--LRS------RD------VEEEIVPTCRELGIGIV 181 (208)
Q Consensus 156 ~~~~--~~~------~~------~~~~~l~~~~~~gi~v~ 181 (208)
+... ..+ .. .-.+.+++++++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4222 211 11 12267889999998764
No 314
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.79 E-value=2e+02 Score=26.41 Aligned_cols=103 Identities=9% Similarity=0.047 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEE---EeecCCCCCCHHHHHHHHHHHHHcC-Ccce---------EeeCcccHHHHHH
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLY---YQHRIDTKIPIEVTIGELKRLVEEG-KIKH---------IDLSEASASTIRR 144 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~---~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~---------iGvs~~~~~~l~~ 144 (208)
.+.+... .+-..|.+.|.+.+++. .++..- ..--++.|+.|.++++.. .++. +|.+++..+.+++
T Consensus 23 ~~t~d~l-~ia~~l~~~G~~~iE~~ggatfd~~~-rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 23 MRTEDML-PIAEKLDKVGFWSLEVWGGATFDVCI-RYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEecCCccchhhc-ccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 3344433 35556888899988884 111000 001246688888887763 2332 3444444443333
Q ss_pred Hhhc---CCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 145 AHTI---HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 145 ~~~~---~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
.++. ..++++.+-..+-+...-...+++++++|..+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 3222 3456666654443332234678888899887763
No 315
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=28.78 E-value=3.3e+02 Score=22.30 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
......+++.+.|+.||+++=.-.... ...++...+++++|.++|++- .|..+.+++++..
T Consensus 47 ~~~~~~~~I~~dL~wLGl~wDe~~~~Q----S~r~~~Y~~~~~~L~~~G~aY---~C~Ct~eel~~~~ 107 (272)
T TIGR03838 47 EVPGAADDILRTLEAYGLHWDGEVVYQ----SQRHALYQAALDRLLAAGLAY---PCQCTRKEIAAAA 107 (272)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCeeee----eCCHHHHHHHHHHHHHcCCEE---ecCCCHHHHHHHh
Confidence 345566889999999998743222111 133566678889999999975 5777778877663
No 316
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=28 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=12.3
Q ss_pred CCCCeEeCCCCCC
Q 040616 36 SGITVLDTSNVYG 48 (208)
Q Consensus 36 ~Gi~~~DtA~~Yg 48 (208)
+|.++|+|++.||
T Consensus 199 ~G~ryF~c~p~yG 211 (234)
T KOG3206|consen 199 NGKRYFECAPKYG 211 (234)
T ss_pred cceEeeecCCccC
Confidence 5999999999999
No 317
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.72 E-value=1.4e+02 Score=22.71 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC
Q 040616 17 YGPPKPESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV 96 (208)
Q Consensus 17 ~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 96 (208)
|..+...++..+.+..+-++|+..+=.+. . +|..++. .+-|++... .....+-+.+++++.|+.++.
T Consensus 42 wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n---~e~RV~~--~~~~l~v~f------i~~A~KP~~~~fr~Al~~m~l 108 (175)
T COG2179 42 WDNPDATPELRAWLAELKEAGIKVVVVSN--N---KESRVAR--AAEKLGVPF------IYRAKKPFGRAFRRALKEMNL 108 (175)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCEEEEEeC--C---CHHHHHh--hhhhcCCce------eecccCccHHHHHHHHHHcCC
Confidence 44444456678888888888888776554 2 6777663 122222111 001112256788899999999
Q ss_pred CcccEEEeec
Q 040616 97 DCIDLYYQHR 106 (208)
Q Consensus 97 d~iDl~~lh~ 106 (208)
+.=.++++-+
T Consensus 109 ~~~~vvmVGD 118 (175)
T COG2179 109 PPEEVVMVGD 118 (175)
T ss_pred ChhHEEEEcc
Confidence 9888888865
No 318
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=28.69 E-value=3.7e+02 Score=22.92 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc-CCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCccc
Q 040616 114 EVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI-HPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 114 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
..+...+..+...+.++-.-+...+.+.++++++. .+..++..+-||.-.- ..+.+.+.|+++|+.++.=..++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34455555555555454444445577888887753 3444555566665432 2347899999999988865555444
No 319
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=28.60 E-value=69 Score=19.88 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCcceEeeCcc
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDLSEA 137 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGvs~~ 137 (208)
+.+.+-..|+.|++.|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 34556677899999999999987654
No 320
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=28.40 E-value=2.5e+02 Score=23.38 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.......+++.+.|+.||.++=.-.+.+. ...+...+++++|+++|++- .|..+.+++.+..+.
T Consensus 47 R~~~~~~~~i~~~L~wlGl~~D~~~~~QS----~r~~~Y~~~~~~L~~~g~aY---~C~Csr~~l~~~r~~ 110 (314)
T PF00749_consen 47 RCRPEFYDAILEDLRWLGLEWDYGPYYQS----DRLEIYQEAAEKLIDKGKAY---PCFCSREELKAAREA 110 (314)
T ss_dssp TCHHHHHHHHHHHHHHHT---STCEEEGG----GGHHHHHHHHHHHHHTTSEE---EEESEHHHHHHHHHH
T ss_pred cchhhHHHHHHhheeEEEEecCCeEEeHH----HHHHHHHHHHHHHhhcCCCc---cccCCHHHHHHHHHH
Confidence 44667888999999999988631222221 23566678899999999974 455567777666543
No 321
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.39 E-value=2.6e+02 Score=26.26 Aligned_cols=80 Identities=6% Similarity=0.064 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEeeCcccHHHHHHHhhcCCccEEe
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKHIDLSEASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 155 (208)
.+.+.+++-++.....-.....-+++|+..+.. ..+.+.+|-+..++ +.+..|.++|.....+..+.+. |.+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~L--s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc--CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHh
Confidence 446667776665554433455678888866433 24567777777777 8999999999654444444432 344
Q ss_pred eccCcCCC
Q 040616 156 LEWSLRSR 163 (208)
Q Consensus 156 ~~~~~~~~ 163 (208)
+.++....
T Consensus 178 f~f~~ls~ 185 (700)
T PRK12323 178 FNLKQMPP 185 (700)
T ss_pred cccCCCCh
Confidence 55555544
No 322
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=28.36 E-value=1.8e+02 Score=19.50 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCcceEe--------eCcc---cHHHHHHHhhcCC-ccEEeeccCcCCCCc
Q 040616 117 IGELKRLVEEGKIKHID--------LSEA---SASTIRRAHTIHP-ITVVRLEWSLRSRDV 165 (208)
Q Consensus 117 ~~~l~~l~~~G~ir~iG--------vs~~---~~~~l~~~~~~~~-~~~~q~~~~~~~~~~ 165 (208)
.+.-.+|+++|+++++- +|-| +.+++.+++..-| +.+.+++..++.+.+
T Consensus 27 ka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~sLPL~p~m~i~VtpL~~HP 87 (90)
T TIGR03221 27 KAYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSGLPLFPYMDIEVTPLARHP 87 (90)
T ss_pred HHHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHhCCCCcceEeEEEEccCCC
Confidence 35567899999998765 2223 4567777777655 557788888887754
No 323
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.33 E-value=3.6e+02 Score=22.70 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=51.1
Q ss_pred EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCCcceE
Q 040616 59 VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLY-YQHR-IDTK----IPIEVTIGELKRLVEEGKIKHI 132 (208)
Q Consensus 59 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~ir~i 132 (208)
+.|..|++..... ....+.+... .+-+.|+..|+|++++- ..|. +.+. .+.........++++.=.+-=+
T Consensus 205 ~~v~iRi~~~D~~---~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi 280 (353)
T cd02930 205 FIIIYRLSMLDLV---EGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVI 280 (353)
T ss_pred ceEEEEecccccC---CCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEE
Confidence 6677777643210 0123444433 34455778888888872 2231 2111 1111123344566665555555
Q ss_pred eeCc-ccHHHHHHHhhcCCccEEee
Q 040616 133 DLSE-ASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 133 Gvs~-~~~~~l~~~~~~~~~~~~q~ 156 (208)
+.-. ++++.++++++....|.+++
T Consensus 281 ~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 281 ASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred EcCCCCCHHHHHHHHHCCCCChhHh
Confidence 5544 57888999998877777776
No 324
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=28.31 E-value=3.3e+02 Score=22.42 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=40.4
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
+.+.......=|+++.-..... ..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 117 ~dl~~~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~tIaIT~~~~s~La~~aD 172 (291)
T TIGR00274 117 NDLQNIHLTKNDVVVGIAASGR--TPYVIAGLQYARSLG-ALTISIACNPKSAASEIAD 172 (291)
T ss_pred HHHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 3355556667799988776544 467999999999998 6788888866666666544
No 325
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=28.29 E-value=1.2e+02 Score=21.64 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEee
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGKIKHIDL 134 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGv 134 (208)
|..+.+.|+.+....+|.++++..+.-. ...+....++.+.+.--|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4556666666767789999998876543 34566667777777623343333
No 326
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.28 E-value=3.4e+02 Score=22.35 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-CCH-HH---HHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCcc
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQH-RIDTK-IPI-EV---TIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPIT 152 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~-~~~-~~---~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 152 (208)
+.+.+.+..++.+ .-|-|-||+=--- +|... .+. +| +...++.++++-.+ -|.|-+++++.++++++.+-.-
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4444444443333 3467777775322 24322 222 23 45566777654222 4788899999999999885432
Q ss_pred EEeeccCcCCCCccccHHHHHHHhCCcEEEcc
Q 040616 153 VVRLEWSLRSRDVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 153 ~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~ 184 (208)
+|=+ +-+ . +.++++.+++.|.+++.+.
T Consensus 114 INDI--~g~-~--d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 INDI--RSL-S--EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EEEC--CCC-C--CHHHHHHHHHcCCCEEEEc
Confidence 3333 112 2 3477888999999999874
No 327
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=28.24 E-value=2e+02 Score=23.27 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=19.8
Q ss_pred HHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 123 LVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 123 l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+++.+.-+.+=+|+|+++.+..+.+.
T Consensus 164 i~~~~~~~~viisSF~~~~l~~l~~~ 189 (282)
T cd08605 164 CKQHAPGRRIMFSSFDPDAAVLLRAL 189 (282)
T ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence 34556667888999999988777654
No 328
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=28.24 E-value=2.1e+02 Score=22.39 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCC-Cchh---hhcceE---EEEeecceecCCCCccCCCChHHHHHHHHHHHHHc
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGP-HTNE---ILLARV---KLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCL 94 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~~e---~~~g~~---~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 94 (208)
++++...+.+.+.++|..|+=|+..|+. |.+. +.+.+. -+-.|..- | -.+.+...+.++.--.|+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaaG----G----irt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKASG----G----VRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEeC----C----CCCHHHHHHHHHHhhHHh
Confidence 4566778899999999999999988862 2211 112211 12222221 1 225777888888888888
Q ss_pred CCCcc
Q 040616 95 DVDCI 99 (208)
Q Consensus 95 ~~d~i 99 (208)
|+++.
T Consensus 202 Gts~~ 206 (211)
T TIGR00126 202 GASAG 206 (211)
T ss_pred CcchH
Confidence 88653
No 329
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=28.17 E-value=2.5e+02 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=17.7
Q ss_pred cccHHHHHHHhCCcEEEcccC
Q 040616 166 EEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl 186 (208)
..++++.++++|+.+.+|.+=
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVN 270 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLN 270 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecC
Confidence 348999999999999999753
No 330
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=28.09 E-value=1.9e+02 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHHHcCCC
Q 040616 78 GDPAYLRAACEASLKCLDVD 97 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d 97 (208)
-+|+.+.+.+++..+.+|++
T Consensus 286 GtPe~V~e~i~~~~~~~G~d 305 (337)
T TIGR03858 286 GSPETVAEKIADTIETLGLD 305 (337)
T ss_pred eCHHHHHHHHHHHHHHcCCC
Confidence 35666666666666666644
No 331
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.01 E-value=2.6e+02 Score=22.92 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHcCCCcccEEEeecC----CCCCC----HHHHHHHHHHHHHcCCcceEeeCccc--HHHHHHHhhcCCccEEeecc
Q 040616 89 ASLKCLDVDCIDLYYQHRI----DTKIP----IEVTIGELKRLVEEGKIKHIDLSEAS--ASTIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~----~~~~~----~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~q~~~ 158 (208)
+..++| .+-|++++-+- ....+ .+-+|+.++.|++.+ ++.+=++.-+ .-.++.+.+..++-++=+.
T Consensus 23 ei~~~L--P~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~-ik~lVIACNTASa~al~~LR~~~~iPVvGvi- 98 (269)
T COG0796 23 EIRRQL--PDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG-IKALVIACNTASAVALEDLREKFDIPVVGVI- 98 (269)
T ss_pred HHHHHC--CCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHHHHHHHHHHhCCCCEEEec-
Confidence 334444 55677777653 22222 234799999999999 9998885433 3446666666554444432
Q ss_pred CcCCCCccccHHHHHHHhCCcEEE
Q 040616 159 SLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
|.- +..++..+++.|+|+|
T Consensus 99 -Pai----k~A~~~t~~~~IgVia 117 (269)
T COG0796 99 -PAI----KPAVALTRNGRIGVIA 117 (269)
T ss_pred -cch----HHHHHhccCCeEEEEe
Confidence 322 2445555566677776
No 332
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=27.93 E-value=2.3e+02 Score=22.93 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=16.5
Q ss_pred cccHHHHHHHhCCcEEEccc
Q 040616 166 EEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~p 185 (208)
...+++.++++|+.|.+|.+
T Consensus 247 ~~~~v~~~~~~Gl~v~~wTv 266 (290)
T cd08607 247 DPSQIELAKSLGLVVFCWGD 266 (290)
T ss_pred ChHHHHHHHHcCCEEEEECC
Confidence 34788888999999999887
No 333
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.91 E-value=3.2e+02 Score=23.22 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=50.1
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHcCCc----ceEeeCcccHH-HHHHHhhc
Q 040616 75 SYCGDPAYLRAACEASLKCLDVDCIDLYYQHR-IDTKIPIEVTIGELKRLVEEGKI----KHIDLSEASAS-TIRRAHTI 148 (208)
Q Consensus 75 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~-~l~~~~~~ 148 (208)
....+.++|..++...-+. +.++-+.+-. -+|...++++.+++..+.+..-+ |.|-||+-... .+.++.+.
T Consensus 128 ~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~ 204 (345)
T PRK14466 128 TGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEE 204 (345)
T ss_pred CCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhc
Confidence 3468889998888866322 2344444433 34445578899999998876444 68888875543 36666554
Q ss_pred CCccEEeeccC
Q 040616 149 HPITVVRLEWS 159 (208)
Q Consensus 149 ~~~~~~q~~~~ 159 (208)
.+ ..+.+.+|
T Consensus 205 ~~-~~LavSLh 214 (345)
T PRK14466 205 SE-CHLAISLH 214 (345)
T ss_pred cC-cEEEEEcC
Confidence 33 34455555
No 334
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=2.9e+02 Score=22.66 Aligned_cols=117 Identities=13% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC-cccHHHHHHHhhc--CCccE
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS-EASASTIRRAHTI--HPITV 153 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~--~~~~~ 153 (208)
+++|+....-+.+....| +.=|-+++-- +...-.+-|+..++. ..||. .|+...+.-+.+. ..||+
T Consensus 166 N~tp~e~~~Fl~~l~~a~--~pGd~~LlGv-----Dl~k~Ae~Le~AYdD----p~gVTa~FnlNvLa~lNr~f~~nFD~ 234 (321)
T COG4301 166 NLTPGECAVFLTQLRGAL--RPGDYFLLGV-----DLRKPAERLEAAYDD----PQGVTAEFNLNVLAHLNRVFGGNFDV 234 (321)
T ss_pred CCChHHHHHHHHHHHhcC--CCcceEEEec-----cccCHHHHHHHhhcC----ccchHHHHHHHHHHHHHHHhccCCCc
Confidence 577887766666666655 3456666642 222334445555554 55665 4777777777665 45899
Q ss_pred EeeccCcCCCCccccHHHHHHHhCCcEEEcc--cCcccccCCCCCcccchhhc
Q 040616 154 VRLEWSLRSRDVEEEIVPTCRELGIGIVAYS--LLGRGFLSSGPKLIHLSATK 204 (208)
Q Consensus 154 ~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~--pl~~G~l~~~~~~~~~a~~~ 204 (208)
.+.++-......+..+--+.+..+-..+-+. ++.--+-.+...+.|++.|+
T Consensus 235 ~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kf 287 (321)
T COG4301 235 DDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKF 287 (321)
T ss_pred chhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCceeehhhhhhC
Confidence 9998876665433344445666666666666 44433333344455555554
No 335
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.72 E-value=1.5e+02 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCccc
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEAS 138 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 138 (208)
-++++++..-.+....+-+..|..++.+|++|++-+--|+
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 5677777554444557789999999999999987655433
No 336
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=27.69 E-value=53 Score=22.59 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 113 IEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
..+.++.+-++.++|+++-.=-..|+.+++.++++.
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~ 115 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHER 115 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHH
Confidence 356789999999999998776667888888887764
No 337
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.67 E-value=35 Score=25.64 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcC-CcceEeeCccc--HHHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 113 IEVTIGELKRLVEEG-KIKHIDLSEAS--ASTIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
..+++++|.++++.+ +|-.+|..|.. ...+.+++ ..++.+..|+-.+. -...+..+++.|+.++.-+.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~~i~~~~~~~~~e--~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GVDIKIYPYDSEEE--IEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T-EEEEEEESSHHH--HHHHHHHHHHTT--EEEESH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CCceEEEEECCHHH--HHHHHHHHHHcCCcEEECCH
Confidence 467888888888655 45555555533 35566655 44566666653221 33788888899999887443
No 338
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=27.67 E-value=1.9e+02 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHH
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRA 145 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 145 (208)
.+.+...+.+.+.|+.||++ .|-++. ....++..-+++++|+++|++- .|-.+.+++++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~-~De~y~----QSer~~~y~~~~e~L~e~G~AY---~C~Ct~eel~~~ 107 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGIN-WDRTFR----QSDRFDRYDEAAEKLKAAGRLY---PCYETPEELELK 107 (445)
T ss_pred cchHHHHHHHHHHHHHcCCC-CCcccc----HHHHHHHHHHHHHHHHHCCCEE---EecCchHHHHHH
Confidence 45677889999999999998 474321 1223445678889999999963 344456666544
No 339
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.62 E-value=57 Score=22.60 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEeec----CCCCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 83 LRAACEASLKCLDVDCIDLYYQHR----IDTKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 83 i~~~~~~sL~~L~~d~iDl~~lh~----~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
.|.++-+.|..... +++..-++. ..+..+...+++.|+.|.+.|.|+.+-..+
T Consensus 9 ~R~~Il~~l~~~~~-~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~ 65 (120)
T PF01475_consen 9 QRLAILELLKESPE-HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGD 65 (120)
T ss_dssp HHHHHHHHHHHHSS-SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHHcCCC-CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 45555556655553 455444433 234566778999999999999999988774
No 340
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=27.52 E-value=2.5e+02 Score=20.59 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=42.9
Q ss_pred hhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcC--CCcccEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 040616 54 ILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLD--VDCIDLYYQHRIDT-KIPIEVTIGELKRLVEE 126 (208)
Q Consensus 54 ~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 126 (208)
..+| +.|+-|++.. ...+..+++.++++++.+. ....|++++..+.. ..+..++.+.|..+.+.
T Consensus 48 ~RlG-~sVSKKvg~~--------AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLG-LAVSRKVDTR--------AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEE-EEEeccccCc--------chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4445 7777777521 3567778877777776542 34459999987753 45677888888777765
No 341
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=27.51 E-value=3.2e+02 Score=22.22 Aligned_cols=68 Identities=15% Similarity=-0.008 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCC-Cchhhhcce----E-------EEEeecceecCCCCccCCCChHHHHHHHHHHHH
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGP-HTNEILLAR----V-------KLTTKFGIRYEDGKYSYCGDPAYLRAACEASLK 92 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~~e~~~g~----~-------~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 92 (208)
+..++.+.|.++|..|+=|+.-|+. |.+.+-+-. + -+.-|..- .-.+.+...+-++..-+
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsG--------GIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAG--------GVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccC--------CCCCHHHHHHHHHHHHH
Confidence 4788899999999999999999873 322221111 1 13333321 23567888899999999
Q ss_pred HcCCCccc
Q 040616 93 CLDVDCID 100 (208)
Q Consensus 93 ~L~~d~iD 100 (208)
.||.+|++
T Consensus 220 ~lg~~~~~ 227 (257)
T PRK05283 220 ILGADWAD 227 (257)
T ss_pred HhChhhcC
Confidence 99998876
No 342
>PRK10997 yieM hypothetical protein; Provisional
Probab=27.44 E-value=2.3e+02 Score=25.35 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCC---CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeC--cccHHHHHHHhhc
Q 040616 82 YLRAACEASLKCLDV---DCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLS--EASASTIRRAHTI 148 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~---d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~ 148 (208)
.+..+++..++.++. ..-|++++-+.......++..+.+..+++++..|..|++ ++....+.++.+.
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcCe
Confidence 366777777777753 257888887664333357789999999997777777765 4443345555443
No 343
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.41 E-value=56 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
Q 040616 16 FYGPPKPESCMIALIHHAIDSGIT 39 (208)
Q Consensus 16 ~~~~~~~~~~~~~~l~~A~~~Gi~ 39 (208)
.|.+..+++++.+++..|+++|+-
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhhc
Confidence 477777899999999999999974
No 344
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=27.34 E-value=1.3e+02 Score=23.75 Aligned_cols=89 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC--cceEeeCcccHHHHHHHhhcCCccEEeeccC-cCCCCccccHHHHHHHhCCcEE-EcccCcccc---
Q 040616 118 GELKRLVEEGK--IKHIDLSEASASTIRRAHTIHPITVVRLEWS-LRSRDVEEEIVPTCRELGIGIV-AYSLLGRGF--- 190 (208)
Q Consensus 118 ~~l~~l~~~G~--ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~l~~~~~~gi~v~-a~~pl~~G~--- 190 (208)
+.+.++.++-. ...|.+..-+......+++...++++-.++. -......+.++..|+++|+.+- .++|+-.+.
T Consensus 69 ~~~~~~~~~~~~~~d~v~v~~~~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~ 148 (237)
T PRK00912 69 SKLRGLVGKFRKKVDVLAVHGGDEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRGGR 148 (237)
T ss_pred HHHHHHHHhccCcccEEEEeCCCHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcccH
Q ss_pred ----cCCCCCcccchhhcCC
Q 040616 191 ----LSSGPKLIHLSATKGC 206 (208)
Q Consensus 191 ----l~~~~~~~~~a~~~~~ 206 (208)
+.....+.++++++|+
T Consensus 149 r~~~~~~~~~~~~~~~~~g~ 168 (237)
T PRK00912 149 RARTLSNFRDNLALARKYDF 168 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCC
No 345
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.14 E-value=3.9e+02 Score=22.61 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=56.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCC
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHP 150 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 150 (208)
...+.+..-+..+-+.+-+++++|-|=.+...... .+..+++++.++|+++|..-.+ +|+-++...+++.+..+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDAGA 219 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhcCC
Confidence 36677777777788888889999988877754333 3578999999999999997644 45558888888877655
No 346
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=27.09 E-value=2.3e+02 Score=22.27 Aligned_cols=53 Identities=23% Similarity=0.063 Sum_probs=33.3
Q ss_pred ceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC--------CccccHHHHHHHhC-CcEEEccc
Q 040616 130 KHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR--------DVEEEIVPTCRELG-IGIVAYSL 185 (208)
Q Consensus 130 r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~l~~~~~~g-i~v~a~~p 185 (208)
..||+|+++.+++.++.+.. +|++= +.+..+ ...-+.+.+.++.. |++++..=
T Consensus 105 ~iIG~S~h~~eea~~A~~~g-~DYv~--~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG 166 (211)
T COG0352 105 LIIGLSTHDLEEALEAEELG-ADYVG--LGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG 166 (211)
T ss_pred CEEEeecCCHHHHHHHHhcC-CCEEE--ECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC
Confidence 48999999999999998764 33322 222221 12225666777776 88887543
No 347
>PRK06361 hypothetical protein; Provisional
Probab=27.06 E-value=2.9e+02 Score=21.13 Aligned_cols=145 Identities=11% Similarity=0.034 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCCCc-------hhhh---c----ce-EEEEeecceecCCCCccCCCChHHHHHHHHH
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGPHT-------NEIL---L----AR-VKLTTKFGIRYEDGKYSYCGDPAYLRAACEA 89 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-------~e~~---~----g~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (208)
...++++.|.+.|+..+=.+++..... .++. + +- ++...-+.. ..++.+ ..+..
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~----------~~~~~~-~~~~~ 79 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH----------VPPKLI-PKLAK 79 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc----------cCchhh-chHHH
Confidence 367889999999999886665543110 0110 0 10 333333321 112222 23334
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEeeccCcCCCCcccc
Q 040616 90 SLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRLEWSLRSRDVEEE 168 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 168 (208)
.+.+++ .|+..+|......+.. .... .++.+.|.+.-+|=-. ...+.++.+.+.. ..+.++.....+.....
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~-~~~~-~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~--~~lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE-EGTN-LAAIECEDVDILAHPGLITEEEAELAAENG--VFLEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh-hhhH-HHHHhCCCCcEecCcchhhHHHHHHHHHcC--eEEEEECCCCcccchHH
Confidence 555554 6667899543222211 1111 4566788776666322 2233343333332 12233222223333458
Q ss_pred HHHHHHHhCCcEEEcccCc
Q 040616 169 IVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 169 ~l~~~~~~gi~v~a~~pl~ 187 (208)
+++.+++.|+.++.-|.-.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH 171 (212)
T PRK06361 153 VARIAREAGAPLVINTDTH 171 (212)
T ss_pred HHHHHHHhCCcEEEECCCC
Confidence 9999999999988766654
No 348
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=27.02 E-value=1.7e+02 Score=20.81 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHH
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRA 145 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 145 (208)
+.+++.+.+.+++.|+..+.+.-++-.+..++...+-....++-+++. +-+-.|+.+++...
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg-------~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHG-------WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhC-------CCeEEeCHHHHHhc
Confidence 578999999999999999998777777777765543333333333331 22334566776654
No 349
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.97 E-value=3.6e+02 Score=22.23 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCeEeCCCCCCCCchhhhcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEee
Q 040616 26 MIALIHHAIDSGITVLDTSNVYGPHTNEILLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 26 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh 105 (208)
..++-....++|+|..|...+ . ....|.+|....+-... ....+.+.++++++..-++|+++ +.++
T Consensus 23 VA~Vs~~Lae~g~NI~disq~-~----d~~~~~ffm~i~~~~~~-----~~~~~~~~l~~~l~~l~~~l~l~----~~i~ 88 (289)
T PRK13010 23 VAAVSGFLAEKGCYIVELTQF-D----DDESGRFFMRVSFHAQS-----AEAASVDTFRQEFQPVAEKFDMQ----WAIH 88 (289)
T ss_pred HHHHHHHHHHCCCCEEecccc-c----ccccCcEEEEEEEEcCC-----CCCCCHHHHHHHHHHHHHHhCCe----EEEe
Confidence 455556667999999998654 2 23444545443322110 01457889999999999999875 3444
Q ss_pred cCCCCC-------CHHHHHHHHHHHHHcCCc--ceEe-eCcccHHHHHHHhhcCCccEEeeccCcCCCC-ccccHHHHHH
Q 040616 106 RIDTKI-------PIEVTIGELKRLVEEGKI--KHID-LSEASASTIRRAHTIHPITVVRLEWSLRSRD-VEEEIVPTCR 174 (208)
Q Consensus 106 ~~~~~~-------~~~~~~~~l~~l~~~G~i--r~iG-vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~l~~~~ 174 (208)
..+... ....-+++|-+..++|.+ .-.+ +||.. +.. +..+...+.+..++..+.++. .+..+++..+
T Consensus 89 ~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-~~~-~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 166 (289)
T PRK13010 89 PDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-DLQ-PLAVQHDIPFHHLPVTPDTKAQQEAQILDLIE 166 (289)
T ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-hHH-HHHHHcCCCEEEeCCCcccccchHHHHHHHHH
Confidence 332211 112347777777777764 3344 35643 333 444444445555555553332 2346899999
Q ss_pred HhCCcEEEcc
Q 040616 175 ELGIGIVAYS 184 (208)
Q Consensus 175 ~~gi~v~a~~ 184 (208)
+.++-++.-.
T Consensus 167 ~~~~Dlivla 176 (289)
T PRK13010 167 TSGAELVVLA 176 (289)
T ss_pred HhCCCEEEEe
Confidence 9988777543
No 350
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.97 E-value=4e+02 Score=22.78 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEeeCc----ccHHHHHHHhhcC--C
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-KIPIEVTIGELKRLVEEGKIKHIDLSE----ASASTIRRAHTIH--P 150 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~--~ 150 (208)
.+++...+.+.++++...-.-+. +.+..++. ..+.+.+.+.++.+.+.| +..|.++. ..|.++.++++.. .
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGLY-VSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 45666666666655544321122 22333332 345677788888888877 56788775 4567766665541 1
Q ss_pred ccEEeeccCcCCCCcc-ccHHHHHHHhCCcEEEcccCcccccCCCCCcccch
Q 040616 151 ITVVRLEWSLRSRDVE-EEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLS 201 (208)
Q Consensus 151 ~~~~q~~~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a 201 (208)
.+ +.+.+|.-+..-- ..-.-.|-+.|+..+--+..+-|--.++..+.++.
T Consensus 187 ~~-~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv 237 (378)
T PRK11858 187 VD-IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVV 237 (378)
T ss_pred cC-CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHH
Confidence 11 2344444433200 11223344688888877777777666666655543
No 351
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=26.93 E-value=3.9e+02 Score=22.61 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh 105 (208)
..+.+.+++.++.. .+++.+++.++.+-
T Consensus 166 gqt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 166 ILKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 35566666666643 45777777777665
No 352
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.84 E-value=32 Score=29.43 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=12.6
Q ss_pred CccEEeeccCcCCCCccccHHHHHHHhCCc
Q 040616 150 PITVVRLEWSLRSRDVEEEIVPTCRELGIG 179 (208)
Q Consensus 150 ~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~ 179 (208)
++.++.--.||..- .+.+.+.++++|+.
T Consensus 73 kvI~NaGg~np~~~--a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 73 KVITNAGGLNPAGC--ADIVREIARELGLS 100 (362)
T ss_pred CEEEeCCCCCHHHH--HHHHHHHHHhcCCC
Confidence 44444444444332 23455555555544
No 353
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=26.78 E-value=3.4e+02 Score=21.90 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEeCCC
Q 040616 20 PKPESCMIALIHHAIDSGITVLDTSN 45 (208)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 45 (208)
..+.++..++++...+.|+..++...
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 34678889999999999999999854
No 354
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.76 E-value=43 Score=28.59 Aligned_cols=148 Identities=16% Similarity=0.066 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce------------EEEEeecceecCCCCccCCCChHHHHHHHHH
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR------------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEA 89 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~------------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (208)
+.++..+.++.|.+.|++.+-|+=+...+..+..+.+ +-|..=+.+..-. ....+++.+ .
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~---~lg~~~~dl-----~ 83 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK---KLGISYDDL-----S 83 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH---TTT-BTTBT-----H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH---HcCCCHHHH-----H
Confidence 5778899999999999999988877643222222222 3333222211000 000111111 1
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCC-ccEEeeccCcCCCC----
Q 040616 90 SLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHP-ITVVRLEWSLRSRD---- 164 (208)
Q Consensus 90 sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~---- 164 (208)
.++.||++ .+=+ |...+ .+.+.+|-+.|.-=.+=.|+.+.+.+..+++..+ ++-+..-.|.+=+.
T Consensus 84 ~~~~lGi~---~lRl---D~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGL 153 (357)
T PF05913_consen 84 FFKELGID---GLRL---DYGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGL 153 (357)
T ss_dssp HHHHHT-S---EEEE---SSS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB
T ss_pred HHHHcCCC---EEEE---CCCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCC
Confidence 23334422 2211 22222 2333344444665566667777888888887743 44333333333222
Q ss_pred ---ccccHHHHHHHhCCcEEEcccCc
Q 040616 165 ---VEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 165 ---~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
.-.+-=.+.++.|+.+.|+-|-.
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~ 179 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGD 179 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--S
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 11134467788899999887655
No 355
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=26.70 E-value=88 Score=24.53 Aligned_cols=42 Identities=26% Similarity=0.189 Sum_probs=25.1
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcc
Q 040616 89 ASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEA 137 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 137 (208)
+.++.+ .+|+++||...+ .+..+.|.+...-..++++.++.-
T Consensus 69 ~i~~~~---~ld~VQlHG~e~----~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 69 EIAEEL---GLDAVQLHGDED----PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HHHHhc---CCCEEEECCCCC----HHHHHHHHhhcCCceEEEEEeCCc
Confidence 444444 489999998633 223333333323458899999863
No 356
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.69 E-value=1.1e+02 Score=25.33 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHcCCCcc--cEEEeecCCCCCCHHHHHHHHHHHHHcCCcce
Q 040616 80 PAYLRAACEASLKCLDVDCI--DLYYQHRIDTKIPIEVTIGELKRLVEEGKIKH 131 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~i--Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 131 (208)
.+...+.+.+.+++||+.+- ..+.=+.+ ...+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 34567888899999998532 23322222 235678999999999999854
No 357
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.66 E-value=3.5e+02 Score=21.95 Aligned_cols=16 Identities=13% Similarity=0.493 Sum_probs=11.7
Q ss_pred ccHHHHHHHhCCcEEE
Q 040616 167 EEIVPTCRELGIGIVA 182 (208)
Q Consensus 167 ~~~l~~~~~~gi~v~a 182 (208)
.++++.|+++|+..+-
T Consensus 134 ~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 134 DYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 3677888888877664
No 358
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.63 E-value=3.8e+02 Score=22.32 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=57.3
Q ss_pred EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCccc
Q 040616 59 VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEAS 138 (208)
Q Consensus 59 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 138 (208)
+-|++.+=... |.-+++.+.+.++ .+..++++-|-+..||-.... -|++++++|+.+.+-.-.+
T Consensus 182 Ikvc~HiI~GL------PgE~~~~mleTak-~v~~~~v~GIKlH~LhvvkgT--------~m~k~Y~~G~l~~ls~eeY- 245 (312)
T COG1242 182 IKVCTHLINGL------PGETRDEMLETAK-IVAELGVDGIKLHPLHVVKGT--------PMEKMYEKGRLKFLSLEEY- 245 (312)
T ss_pred CeEEEEEeeCC------CCCCHHHHHHHHH-HHHhcCCceEEEEEEEEecCC--------hHHHHHHcCCceeccHHHH-
Confidence 55666543222 3456778887777 788999999999999976432 3678888999876543222
Q ss_pred HHHHHHHhhcCCccEEeeccCcC
Q 040616 139 ASTIRRAHTIHPITVVRLEWSLR 161 (208)
Q Consensus 139 ~~~l~~~~~~~~~~~~q~~~~~~ 161 (208)
.+.+...++..||.++--+.+--
T Consensus 246 v~~~~d~le~lpp~vviHRitgd 268 (312)
T COG1242 246 VELVCDQLEHLPPEVVIHRITGD 268 (312)
T ss_pred HHHHHHHHHhCCcceEEEEecCC
Confidence 13345556667888776666544
No 359
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.57 E-value=1.2e+02 Score=20.74 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 110 KIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 110 ~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
..+...+++.|+.|.+.|.|+.+-..+
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~ 58 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGD 58 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 345678999999999999999987765
No 360
>PRK10060 RNase II stability modulator; Provisional
Probab=26.52 E-value=4.5e+02 Score=24.30 Aligned_cols=70 Identities=17% Similarity=0.390 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCcceEeeCcccH--HHHHHHhhcCCccEEeeccCcCC--------CCccccHHHHHHHhCCcEEE
Q 040616 113 IEVTIGELKRLVEEGKIKHIDLSEASA--STIRRAHTIHPITVVRLEWSLRS--------RDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~--------~~~~~~~l~~~~~~gi~v~a 182 (208)
.+.+.+.+.+|++.|- .|.+.+|.. ..+..+ ...|++.+.+.-+... +..-..++..|++.|+.++|
T Consensus 540 ~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L-~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 540 EELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQL-ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHH-HhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4556788899999987 666666542 233333 3356777777654432 22223689999999999997
Q ss_pred ccc
Q 040616 183 YSL 185 (208)
Q Consensus 183 ~~p 185 (208)
-..
T Consensus 617 eGV 619 (663)
T PRK10060 617 EGV 619 (663)
T ss_pred ecC
Confidence 543
No 361
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.50 E-value=2.3e+02 Score=22.99 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecCC--C-CCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEeecc
Q 040616 82 YLRAACEASLKCLDVDCIDLYYQHRID--T-KIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRLEW 158 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~d~iDl~~lh~~~--~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 158 (208)
.-+..+-+.|.++|+++|++-..-.|. + ..+.+++.+.+... ..++..+++ -+...++.+++.. ++.+.+..
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~ 94 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALV-PNLRGAERALAAG-VDEVAVFV 94 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEE
Confidence 345556677999999999997433332 1 12344555555432 246666665 4667788888763 33333332
Q ss_pred CcCC--------CC------ccccHHHHHHHhCCcEE
Q 040616 159 SLRS--------RD------VEEEIVPTCRELGIGIV 181 (208)
Q Consensus 159 ~~~~--------~~------~~~~~l~~~~~~gi~v~ 181 (208)
+.-+ .. .-.+.+++++++|+.+.
T Consensus 95 ~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 95 SASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 2211 11 12256899999999886
No 362
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.47 E-value=3.4e+02 Score=22.84 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=39.6
Q ss_pred cceEeeCcccHHHHHHHhhc-CCccEEeeccCcCCCC-ccccHHHHHHHhCCcEEEcccCcccc
Q 040616 129 IKHIDLSEASASTIRRAHTI-HPITVVRLEWSLRSRD-VEEEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 129 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
++-.-+...+.+.+++++.. .+..++..+.||.... .-+.+.+.|+++|+.++.=..++.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 34444444567778777653 3445555677875432 23479999999999998766654443
No 363
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.38 E-value=4e+02 Score=22.61 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=75.9
Q ss_pred EEEEeecceec-----CCCC--ccCCCChHHHHHHHHHHHHHcCCCc-ccEEEeecCCCCCCHHHHHHHHHHHHH-cCC-
Q 040616 59 VKLTTKFGIRY-----EDGK--YSYCGDPAYLRAACEASLKCLDVDC-IDLYYQHRIDTKIPIEVTIGELKRLVE-EGK- 128 (208)
Q Consensus 59 ~~i~tK~~~~~-----~~~~--~~~~~~~~~i~~~~~~sL~~L~~d~-iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~- 128 (208)
+.|+|-++..- ..+. ...+.+.++|.+++....+.++.+. --++++-.-+|....+.+.+++..+++ .|.
T Consensus 101 ~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~ 180 (348)
T PRK14467 101 LCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMTSPWGLD 180 (348)
T ss_pred EEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHcChhccC
Confidence 56666655432 1122 2358899999999987776664332 334555545566667889999999986 665
Q ss_pred --cceEeeCccc-HHHHHHHhhcC---CccEEeeccCcCCCC------------ccccHHHHHH----HhCCcEEEcccC
Q 040616 129 --IKHIDLSEAS-ASTIRRAHTIH---PITVVRLEWSLRSRD------------VEEEIVPTCR----ELGIGIVAYSLL 186 (208)
Q Consensus 129 --ir~iGvs~~~-~~~l~~~~~~~---~~~~~q~~~~~~~~~------------~~~~~l~~~~----~~gi~v~a~~pl 186 (208)
-|++-||+-. ...+.++.... +++.. +.+|-.+.. +-..+++.++ +.|..+...-|+
T Consensus 181 ~~~r~itvsT~G~~~~i~~l~~~~~l~~v~La-lSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvL 259 (348)
T PRK14467 181 LSKRRITISTSGIIHQIKRMAEDPVMPEVNLA-VSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVL 259 (348)
T ss_pred cCCCcEEEECCCChhHHHHHHhhccccCeeEE-EECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 3577776633 23344444321 23322 444443321 1224555554 667777777777
Q ss_pred ccccc
Q 040616 187 GRGFL 191 (208)
Q Consensus 187 ~~G~l 191 (208)
-.|.-
T Consensus 260 IpGvN 264 (348)
T PRK14467 260 IKGVN 264 (348)
T ss_pred ECCcc
Confidence 76643
No 364
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.35 E-value=3.4e+02 Score=21.76 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEee-cCCCCCCHHHHHHHHHHHHHc-CCcceEeeCcccHHHHHHHhhcC---Cc
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQH-RIDTKIPIEVTIGELKRLVEE-GKIKHIDLSEASASTIRRAHTIH---PI 151 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh-~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~---~~ 151 (208)
.++.+...+ +-+.|.++|+++|++-+.- +| +-|+.+..+.+. ..++..+++..+...++.+.+.. ++
T Consensus 16 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~-------~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 16 SLTPEEKLE-IARQLDELGVDVIEAGFPAASP-------GDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKV 87 (268)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEeCCCCCH-------HHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCC
Confidence 455555444 4455999999999986432 22 124566666653 24777777766677777777653 25
Q ss_pred cEEeeccCc--C------CCC------ccccHHHHHHHhCCcEEEc
Q 040616 152 TVVRLEWSL--R------SRD------VEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 152 ~~~q~~~~~--~------~~~------~~~~~l~~~~~~gi~v~a~ 183 (208)
+.+.+.++. . ... .-.+.+++++++|+.+.-.
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 666554432 1 111 1126788999999876643
No 365
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=26.29 E-value=1.2e+02 Score=22.52 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 97 DCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 97 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
+.=|++++-..... ..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 100 ~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 100 QPGDVLIGISTSGN--SPNVLKALEAAKERG-MKTIALTGRDGGKLLELAD 147 (177)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhCC
Confidence 44577777654333 478999999999998 8999999876666655543
No 366
>PLN02590 probable tyrosine decarboxylase
Probab=26.22 E-value=4.1e+02 Score=24.13 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=20.0
Q ss_pred cccHHHHHHHhCCcEEEcccCccccc
Q 040616 166 EEEIVPTCRELGIGIVAYSLLGRGFL 191 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl~~G~l 191 (208)
-.++.+.|+++|+-+..=..+++..+
T Consensus 306 l~~Ia~i~~~~g~WlHVDaA~GG~al 331 (539)
T PLN02590 306 LVPLGNIAKKYGIWLHVDAAYAGNAC 331 (539)
T ss_pred HHHHHHHHHHhCCeEEEecchhhhhh
Confidence 56888888888888887777776643
No 367
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.99 E-value=4.1e+02 Score=22.56 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=56.1
Q ss_pred cccE-EEeecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEeeCc--ccHHHHHHHhhc---CC--ccEE
Q 040616 98 CIDL-YYQHRIDTK-----------IPIEVTIGELKRLV-EEGK---IKHIDLSE--ASASTIRRAHTI---HP--ITVV 154 (208)
Q Consensus 98 ~iDl-~~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs~--~~~~~l~~~~~~---~~--~~~~ 154 (208)
++|+ +-||.++++ .+++++.+++.++. +.|+ ++++=+.. .+.+.++++.+. .+ ..++
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~Vn 287 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVN 287 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEE
Confidence 4444 567887543 24566777776655 3332 35555554 456666666554 22 4577
Q ss_pred eeccCcCCCC----ccc----cHHHHHHHhCCcEEEcccCcc
Q 040616 155 RLEWSLRSRD----VEE----EIVPTCRELGIGIVAYSLLGR 188 (208)
Q Consensus 155 q~~~~~~~~~----~~~----~~l~~~~~~gi~v~a~~pl~~ 188 (208)
-++||+.... +.. .+.+.++++|+.+......|.
T Consensus 288 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 329 (348)
T PRK14467 288 LIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGV 329 (348)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 7899986421 122 456677788999999888765
No 368
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.97 E-value=2.5e+02 Score=20.09 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHHHHHcC--CCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCC
Q 040616 77 CGDPAYLRAACEASLKCLD--VDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGK 128 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~--~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ 128 (208)
+...+++.+..+...++|+ .+.+.+.+.-...+. ..-..+-++|+++.++|.
T Consensus 37 d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~ 91 (135)
T cd00419 37 DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGV 91 (135)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4457788888888889998 444555544222111 111235677888888884
No 369
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.85 E-value=3.8e+02 Score=22.14 Aligned_cols=124 Identities=11% Similarity=0.063 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCC---------CCCCCch----hhhcce----------EEEEeecceecCCCCccCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTSN---------VYGPHTN----EILLAR----------VKLTTKFGIRYEDGKYSYCG 78 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~g~~----e~~~g~----------~~i~tK~~~~~~~~~~~~~~ 78 (208)
+.++..+..+.+.+.|+..||.-- .|+ |.. .+.+.+ +-|+.|+...+. .
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~-------~ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD-------D 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC-------C
Confidence 557788888888889999888521 121 111 111111 446667643221 1
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEe
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPI--EVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVR 155 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 155 (208)
..... ..+-+.|+..|. |.+.+|........ ...|+.+.++++.=.+--|+... .+++.+.++++....+.+|
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11112 234455667775 55566754221111 23477788888776677777655 5788899998776677777
Q ss_pred ec
Q 040616 156 LE 157 (208)
Q Consensus 156 ~~ 157 (208)
+-
T Consensus 221 ig 222 (319)
T TIGR00737 221 IG 222 (319)
T ss_pred EC
Confidence 74
No 370
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.85 E-value=1e+02 Score=25.52 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKI 129 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 129 (208)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 445678888999999986 5754322 1111234578899999999998
No 371
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.71 E-value=2.4e+02 Score=19.69 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=15.4
Q ss_pred CccccHHHHHHHhCCcEEEcc
Q 040616 164 DVEEEIVPTCRELGIGIVAYS 184 (208)
Q Consensus 164 ~~~~~~l~~~~~~gi~v~a~~ 184 (208)
...++++++|.+++++++...
T Consensus 86 ~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 86 EIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred cCCHHHHHHHHHcCCCEEEeC
Confidence 334688888888888888643
No 372
>PRK15108 biotin synthase; Provisional
Probab=25.68 E-value=4.1e+02 Score=22.42 Aligned_cols=109 Identities=9% Similarity=0.037 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEeeCc--ccHHHHHHHhhcC----
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDT-KIPIEVTIGELKRLVEEGKIKHIDLSE--ASASTIRRAHTIH---- 149 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~---- 149 (208)
-.+++.|.+.++. ....|...+-+ ...+.++ ...++.+.+.+..+++.|. .+.+|+ .+.+.+.++.+.+
T Consensus 75 ~ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 75 LMEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3688888887765 45689888733 3332222 3445667777777777664 344554 6677777776541
Q ss_pred --CccEEeeccCcCC-C-Ccc--ccHHHHHHHhCCcEEEcccCccc
Q 040616 150 --PITVVRLEWSLRS-R-DVE--EEIVPTCRELGIGIVAYSLLGRG 189 (208)
Q Consensus 150 --~~~~~q~~~~~~~-~-~~~--~~~l~~~~~~gi~v~a~~pl~~G 189 (208)
.++...--|.-.. . ..+ -+.++.+++.|+.+-+...+|-|
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1111111111111 1 111 26788888889877655555544
No 373
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=25.64 E-value=1.2e+02 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.3
Q ss_pred cccHHHHHHHh-CCcEEEccc
Q 040616 166 EEEIVPTCREL-GIGIVAYSL 185 (208)
Q Consensus 166 ~~~~l~~~~~~-gi~v~a~~p 185 (208)
..++++.|+++ |+.|.+|..
T Consensus 218 t~~~V~~~h~~~gl~V~~WTV 238 (263)
T cd08580 218 TPAAVDCFRRNSKVKIVLFGI 238 (263)
T ss_pred CHHHHHHHHhcCCcEEEEEEe
Confidence 35789999999 999999976
No 374
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.64 E-value=3.4e+02 Score=24.03 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc---CCccEEee--ccCc-------C-CCC---ccccHHHHHHH
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI---HPITVVRL--EWSL-------R-SRD---VEEEIVPTCRE 175 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~--~~~~-------~-~~~---~~~~~l~~~~~ 175 (208)
.+++.++.+.+++++.. +.+.+.++... ..++.... .-++ . ++. .-.+.++..++
T Consensus 199 ~~~~~~~~~a~~v~~~v---------Dld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~ 269 (451)
T COG1797 199 ELEAKLEALAEVVEKHV---------DLDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLRE 269 (451)
T ss_pred hHHHHHHHHHHHHHhhC---------CHHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHH
Confidence 35667888877777643 67777776653 11221110 0011 0 010 12378999999
Q ss_pred hCCcEEEcccCcccccC
Q 040616 176 LGIGIVAYSLLGRGFLS 192 (208)
Q Consensus 176 ~gi~v~a~~pl~~G~l~ 192 (208)
.|-.++-+|||..-.|-
T Consensus 270 ~GAelv~FSPL~D~~lP 286 (451)
T COG1797 270 AGAELVFFSPLADEELP 286 (451)
T ss_pred CCCEEEEeCCcCCCCCC
Confidence 99999999999975444
No 375
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=25.57 E-value=4.8e+02 Score=23.15 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHH----HHHcC-CCcccEEEeecCCCCCCHHHHHHHHHHHHHc-CCcceEeeCcccHHHHHHHhhcC-
Q 040616 77 CGDPAYLRAACEAS----LKCLD-VDCIDLYYQHRIDTKIPIEVTIGELKRLVEE-GKIKHIDLSEASASTIRRAHTIH- 149 (208)
Q Consensus 77 ~~~~~~i~~~~~~s----L~~L~-~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~- 149 (208)
..+.+.+.+.++.. ..+.| .=..|++-|+.... +.+.+...++.+++. +. -+.+-+++++.++++++..
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleaga 176 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVA 176 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcC
Confidence 44556666665555 12334 33578888887654 345566666666653 33 4777889999999998763
Q ss_pred --CccEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 150 --PITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 150 --~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
.+.++-+. ...-+.+.+.++++|..+++..+
T Consensus 177 d~~plI~Sat-----~dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 177 DRKPLLYAAT-----KENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred CCCceEEecC-----cchHHHHHHHHHHcCCcEEEEch
Confidence 23333322 11124678888888888888664
No 376
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.54 E-value=4.5e+02 Score=22.86 Aligned_cols=82 Identities=6% Similarity=0.009 Sum_probs=55.9
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcC----CcceEeeCcccHHHHHHHhhcCCccEEeeccCcCCC-CccccHHHHH
Q 040616 99 IDLYYQHRIDTKIPIEVTIGELKRLVEEG----KIKHIDLSEASASTIRRAHTIHPITVVRLEWSLRSR-DVEEEIVPTC 173 (208)
Q Consensus 99 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~l~~~ 173 (208)
.++.++-.|-+.. -++.+.+|++.. .=-+.|=|-++...+.++++....+++|......-- ..-..+...|
T Consensus 266 ~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA 341 (415)
T cd03324 266 FKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMA 341 (415)
T ss_pred cCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHH
Confidence 4555666654322 355666666653 223445566788899999988889999988776532 1134889999
Q ss_pred HHhCCcEEEcc
Q 040616 174 RELGIGIVAYS 184 (208)
Q Consensus 174 ~~~gi~v~a~~ 184 (208)
+++|+.+..++
T Consensus 342 ~a~gi~~~pH~ 352 (415)
T cd03324 342 AKFGVPVCPHA 352 (415)
T ss_pred HHcCCeEEEcC
Confidence 99999998764
No 377
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=25.41 E-value=3.6e+02 Score=21.73 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHcCCcceEeeCcccHHHHHHHhhcCC-ccEEee-cc------------------------------CcCCCCccc
Q 040616 120 LKRLVEEGKIKHIDLSEASASTIRRAHTIHP-ITVVRL-EW------------------------------SLRSRDVEE 167 (208)
Q Consensus 120 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~-~~------------------------------~~~~~~~~~ 167 (208)
++.+++.|.-+.+=+|+|+++.+..+....| +.+..+ .. +........
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQWNLLGLVSAAEPLVMCP 235 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHHCCCeEEEechHHhhhCh
Confidence 3444556777889999999998877755421 111111 00 000001134
Q ss_pred cHHHHHHHhCCcEEEccc
Q 040616 168 EIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~p 185 (208)
.+++.++++|+.+.+|..
T Consensus 236 ~~v~~~~~~Gl~v~~WTv 253 (286)
T cd08606 236 RLIQVVKRSGLVCVSYGV 253 (286)
T ss_pred HHHHHHHHCCcEEEEECC
Confidence 788999999999999976
No 378
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.22 E-value=3.4e+02 Score=24.18 Aligned_cols=99 Identities=8% Similarity=0.086 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCC------CHHHHHHHHHHHHHcC-CcceE---------eeCcccHHH
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKI------PIEVTIGELKRLVEEG-KIKHI---------DLSEASAST 141 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G-~ir~i---------Gvs~~~~~~ 141 (208)
.+.+...+ +-..|.++|++.|++. ..... --++.|+.|..+++.. .++.. |..++..+.
T Consensus 22 ~~t~dkl~-Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDMLP-ALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 44444433 4456888899999883 11110 0123577777776652 23332 222222222
Q ss_pred ----HHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 142 ----IRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 142 ----l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
++.+.+ ..++++.+-.++-+...-...+++++++|..+.+
T Consensus 97 v~~fv~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 140 (467)
T PRK14041 97 VELFVKKVAE-YGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQG 140 (467)
T ss_pred hHHHHHHHHH-CCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEE
Confidence 333333 3456666554443332234678888999887763
No 379
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=25.21 E-value=1.3e+02 Score=18.35 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHcCCcceEee
Q 040616 111 IPIEVTIGELKRLVEEGKIKHIDL 134 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~iGv 134 (208)
.+...+.+.|..|.++|.|...+-
T Consensus 34 i~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 34 ISRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEcC
Confidence 345678999999999999988763
No 380
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=2.9e+02 Score=24.21 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeecC-CCCCC-------HHHHHHHHHH----HHHcCCc--ceEeeCcccHHHHHHHhh
Q 040616 82 YLRAACEASLKCLDVDCIDLYYQHRI-DTKIP-------IEVTIGELKR----LVEEGKI--KHIDLSEASASTIRRAHT 147 (208)
Q Consensus 82 ~i~~~~~~sL~~L~~d~iDl~~lh~~-~~~~~-------~~~~~~~l~~----l~~~G~i--r~iGvs~~~~~~l~~~~~ 147 (208)
..++-++..++.||.++ -++-+|-. .+... ++|.+...+. +-+.|+. |.|=+++.++..+.++-.
T Consensus 346 ~t~~~l~~a~k~lg~~~-PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~ 424 (580)
T KOG3705|consen 346 ATQEKLDKALKSLGLDK-PIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKN 424 (580)
T ss_pred hhHHHHHHHHHhCCCCC-ceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhc
Confidence 35788899999999998 67777733 23333 3333222222 2245665 889999999999998876
Q ss_pred cC
Q 040616 148 IH 149 (208)
Q Consensus 148 ~~ 149 (208)
..
T Consensus 425 kY 426 (580)
T KOG3705|consen 425 KY 426 (580)
T ss_pred cC
Confidence 53
No 381
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=25.02 E-value=2.3e+02 Score=24.79 Aligned_cols=113 Identities=12% Similarity=-0.076 Sum_probs=64.2
Q ss_pred HHHHHHHHHCC----CCeEeCCCCCCC--Cchhhhcce----EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCC
Q 040616 27 IALIHHAIDSG----ITVLDTSNVYGP--HTNEILLAR----VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDV 96 (208)
Q Consensus 27 ~~~l~~A~~~G----i~~~DtA~~Yg~--g~~e~~~g~----~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 96 (208)
....+++-+.+ |+.-+|+..|.. +.++..+-. +.++.......-+..+..+..++++.++++..-++.=.
T Consensus 97 e~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~ 176 (414)
T COG1625 97 EPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIE 176 (414)
T ss_pred hhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 34455555555 777777666542 334544433 66665554332223345566677777777666666522
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc----eEeeCcccH
Q 040616 97 DCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK----HIDLSEASA 139 (208)
Q Consensus 97 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~ 139 (208)
=|.+++++=..++-..++++.+-|+++-..+.+- -+|+.-++.
T Consensus 177 v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 177 VHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred eeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 3677777755444455666777777665444443 467765553
No 382
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.00 E-value=3.8e+02 Score=21.88 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.9
Q ss_pred cHHHHHHHhCCcEEEcc
Q 040616 168 EIVPTCRELGIGIVAYS 184 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~ 184 (208)
++.+.|+++||..+-..
T Consensus 138 ~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 138 ELLKAAEKHGIDPIFLV 154 (265)
T ss_pred HHHHHHHHcCCcEEEEe
Confidence 56777777777666433
No 383
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=24.95 E-value=1.9e+02 Score=22.82 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHHHcCCcceEeeCc---cc-----HHHHHHHhhcCCccE--EeeccC-cCCCCcc---------ccHHHHHHHhCC
Q 040616 119 ELKRLVEEGKIKHIDLSE---AS-----ASTIRRAHTIHPITV--VRLEWS-LRSRDVE---------EEIVPTCRELGI 178 (208)
Q Consensus 119 ~l~~l~~~G~ir~iGvs~---~~-----~~~l~~~~~~~~~~~--~q~~~~-~~~~~~~---------~~~l~~~~~~gi 178 (208)
.++...+.| ...+.+.. +. .+.+.++++...+.+ .+...+ +...... ...++.|++.|+
T Consensus 20 ~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (274)
T COG1082 20 ILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA 98 (274)
T ss_pred HHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 445566667 67777763 11 345555555543332 233333 2333211 127777888887
Q ss_pred cEEEcccC
Q 040616 179 GIVAYSLL 186 (208)
Q Consensus 179 ~v~a~~pl 186 (208)
.++...+-
T Consensus 99 ~~vv~~~g 106 (274)
T COG1082 99 KVVVVHPG 106 (274)
T ss_pred CeEEeecc
Confidence 76665443
No 384
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.85 E-value=1.8e+02 Score=18.09 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCC
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDT 109 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~ 109 (208)
..+.+.+.+++.+..||. |+++++.....
T Consensus 3 kre~i~~~iR~~fs~lG~--I~vLYvn~~eS 31 (62)
T PF15513_consen 3 KREEITAEIRQFFSQLGE--IAVLYVNPYES 31 (62)
T ss_pred HHHHHHHHHHHHHHhcCc--EEEEEEccccc
Confidence 467899999999999985 99999986543
No 385
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.77 E-value=4e+02 Score=23.96 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC----------CcceEeeCcccHHHHHHH
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG----------KIKHIDLSEASASTIRRA 145 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----------~ir~iGvs~~~~~~l~~~ 145 (208)
..++.+. +..+-+.|.++|+++|.+-+ |... .+-++++..+.+.+ ..+-.+++....+.++.+
T Consensus 101 v~fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~s---~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 101 GSLTPPQ-KLEIARQLAKLRVDIMEVGF---PGSS---EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCCHHH-HHHHHHHHHHcCCCEEEEeC---CCCC---HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 3455554 34566679999999888855 4222 22233344443321 133446666666677777
Q ss_pred hhcC---CccEEeec--cCcCCC------C------ccccHHHHHHHhCCcEEEccc
Q 040616 146 HTIH---PITVVRLE--WSLRSR------D------VEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 146 ~~~~---~~~~~q~~--~~~~~~------~------~~~~~l~~~~~~gi~v~a~~p 185 (208)
++.. ..+.+.+. .+..+. . .-.+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 6541 22223322 111111 0 113688899999986555554
No 386
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=24.71 E-value=96 Score=21.87 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCcceEeeCcccHHHH
Q 040616 118 GELKRLVEEGKIKHIDLSEASASTI 142 (208)
Q Consensus 118 ~~l~~l~~~G~ir~iGvs~~~~~~l 142 (208)
+...+++++|| +++|++.-..++.
T Consensus 85 eeI~~~v~~GK-~AFGft~~hie~v 108 (117)
T PF10941_consen 85 EEIRKEVAEGK-KAFGFTAQHIEQV 108 (117)
T ss_pred HHHHHHHHcCC-eeeeccHHHHHHH
Confidence 44567888999 7889887655543
No 387
>PRK02227 hypothetical protein; Provisional
Probab=24.67 E-value=3.7e+02 Score=21.59 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=77.3
Q ss_pred HHHHHCCCCeEeCCCCCCCCchhhhcce----------------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHc
Q 040616 31 HHAIDSGITVLDTSNVYGPHTNEILLAR----------------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCL 94 (208)
Q Consensus 31 ~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~----------------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 94 (208)
..|++.|..+||.=+. +|-.+|. .-||..++- ....+..+..++. .....
T Consensus 14 ~~Al~~GaDiIDvK~P-----~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD--------~p~~p~~~~~aa~-~~a~~ 79 (238)
T PRK02227 14 LEALAGGADIIDVKNP-----KEGSLGANFPWVIREIVAAVPGRKPVSATIGD--------VPYKPGTISLAAL-GAAAT 79 (238)
T ss_pred HHHHhcCCCEEEccCC-----CCCCCCCCCHHHHHHHHHHhCCCCCceeeccC--------CCCCchHHHHHHH-HHHhh
Confidence 5678999999997542 4444444 233333331 1234444444433 23456
Q ss_pred CCCcccEEEeecCCCCCC---HHHHHHHHHHHHHcCCcceEeeCcc------cHHHHHHHhhcCCccEEeecc------C
Q 040616 95 DVDCIDLYYQHRIDTKIP---IEVTIGELKRLVEEGKIKHIDLSEA------SASTIRRAHTIHPITVVRLEW------S 159 (208)
Q Consensus 95 ~~d~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~------~ 159 (208)
|.||+-+=+.-..+...- +..+++++..+....++-.++.+.+ ++..+.++.....++.+|+.- +
T Consensus 80 GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~ 159 (238)
T PRK02227 80 GADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKS 159 (238)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcc
Confidence 888887766532221110 1122344444555777888888875 566777777777778888732 2
Q ss_pred cCCCC---ccccHHHHHHHhCCcE
Q 040616 160 LRSRD---VEEEIVPTCRELGIGI 180 (208)
Q Consensus 160 ~~~~~---~~~~~l~~~~~~gi~v 180 (208)
+++.- ....+++.|+++|+..
T Consensus 160 Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 160 LFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred hHhhCCHHHHHHHHHHHHHcccHh
Confidence 22222 2337888899988743
No 388
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.53 E-value=1.9e+02 Score=27.93 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCc--ccEEEeecCCCCCC---HHHHHHHHHHHHHcCCcceEeeCcccHHH
Q 040616 85 AACEASLKCLDVDC--IDLYYQHRIDTKIP---IEVTIGELKRLVEEGKIKHIDLSEASAST 141 (208)
Q Consensus 85 ~~~~~sL~~L~~d~--iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 141 (208)
=++.-+|..+=..+ ++++++.-|....| .+.++++|+.+... ++.|||-+|..+-
T Consensus 826 LalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel 885 (908)
T COG0419 826 LALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEEL 885 (908)
T ss_pred HHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHH
Confidence 34555555554555 99999999977665 34578888888887 8899999988544
No 389
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.45 E-value=2.2e+02 Score=21.28 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=15.6
Q ss_pred cHHHHHHHhCCcEEEcccCc
Q 040616 168 EIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~pl~ 187 (208)
.+++.++++|..++..+|..
T Consensus 98 ~ii~~~~~~~~~~il~tp~~ 117 (198)
T cd01821 98 RYIAEARAKGATPILVTPVT 117 (198)
T ss_pred HHHHHHHHCCCeEEEECCcc
Confidence 67788888888888877764
No 390
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=24.43 E-value=1.6e+02 Score=20.44 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEeeC
Q 040616 84 RAACEASLKCLDVDCIDLYYQHRIDTKI-PIEVTIGELKRLVEEGKIKHIDLS 135 (208)
Q Consensus 84 ~~~~~~sL~~L~~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs 135 (208)
+..+++.|+.+....+|.+++..++.-. ...+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 4556666666666789999999886543 3446677777777765 4444443
No 391
>PLN02231 alanine transaminase
Probab=24.21 E-value=3.4e+02 Score=24.51 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=6.2
Q ss_pred cHHHHHHHhCCcEE
Q 040616 168 EIVPTCRELGIGIV 181 (208)
Q Consensus 168 ~~l~~~~~~gi~v~ 181 (208)
+++++|+++|+-++
T Consensus 295 ~Iv~~a~~~~l~lI 308 (534)
T PLN02231 295 DIVEFCKQEGLVLL 308 (534)
T ss_pred HHHHHHHHcCCEEE
Confidence 34444444444444
No 392
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.13 E-value=1.9e+02 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHHCCCCeEeCCC
Q 040616 28 ALIHHAIDSGITVLDTSN 45 (208)
Q Consensus 28 ~~l~~A~~~Gi~~~DtA~ 45 (208)
+..+.|-+.|...||+.-
T Consensus 80 ~v~~~a~~r~l~v~DATC 97 (294)
T COG0761 80 AVREEAKERGLKVIDATC 97 (294)
T ss_pred HHHHHHHHCCCEEEecCC
Confidence 345666778888888543
No 393
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=24.06 E-value=2.9e+02 Score=24.07 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceE--------------eeCcccHHHHHHHhhc
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHI--------------DLSEASASTIRRAHTI 148 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i--------------Gvs~~~~~~l~~~~~~ 148 (208)
.+++...++|.-.-.+++.+|.-..- =++||+|.++|.+..+ |+..-.++++..+.+.
T Consensus 198 p~V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~ 269 (403)
T PF06792_consen 198 PCVDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARA 269 (403)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHc
Confidence 55556666665556899999975332 4789999999998866 4445556777777665
No 394
>PRK08462 biotin carboxylase; Validated
Probab=23.96 E-value=65 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 140 STIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 140 ~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
+.+.++.+...+|.+-.-+..+.. ...+.+.|++.|+.+++-+|
T Consensus 66 ~~l~~~~~~~~~D~i~pg~g~lse--~~~~a~~~e~~Gi~~~g~~~ 109 (445)
T PRK08462 66 PAIISAAEIFEADAIFPGYGFLSE--NQNFVEICSHHNIKFIGPSV 109 (445)
T ss_pred HHHHHHHHHcCCCEEEECCCcccc--CHHHHHHHHHCCCeEECcCH
Confidence 444444444445554444432222 12344555555555554333
No 395
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=1.8e+02 Score=20.69 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=33.5
Q ss_pred cHHHHHHHhhcCC-ccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCc
Q 040616 138 SASTIRRAHTIHP-ITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 138 ~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
+++.+++.++..+ +.++-+--..-.+-+...+...|+..||++-.++.=+
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~A 106 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGA 106 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchh
Confidence 4566666666543 5565555444444455689999999999998776543
No 396
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.89 E-value=2.8e+02 Score=22.74 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=23.0
Q ss_pred HHHHH-HHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 116 TIGEL-KRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 116 ~~~~l-~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
..+.+ +.+++.+..+.+=+++|+++.+..+...
T Consensus 165 ~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~ 198 (293)
T cd08572 165 FVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLK 198 (293)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhh
Confidence 34433 4444567778888999999988777654
No 397
>PRK14017 galactonate dehydratase; Provisional
Probab=23.87 E-value=4.6e+02 Score=22.34 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEe--eCcccHHHHHHHhhcC--CccEEe
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHID--LSEASASTIRRAHTIH--PITVVR 155 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~--~~~~~q 155 (208)
++.-.+.++...+.+|- |+-+.-+.+...+.+++.+.+..|.+-| +..|= +...+.+.+.++.+.. |+..-+
T Consensus 160 ~~~d~~~i~avr~~~g~---~~~l~vDaN~~w~~~~A~~~~~~l~~~~-~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dE 235 (382)
T PRK14017 160 VDAAVARVAAVREAVGP---EIGIGVDFHGRVHKPMAKVLAKELEPYR-PMFIEEPVLPENAEALPEIAAQTSIPIATGE 235 (382)
T ss_pred HHHHHHHHHHHHHHhCC---CCeEEEECCCCCCHHHHHHHHHhhcccC-CCeEECCCCcCCHHHHHHHHhcCCCCEEeCC
Confidence 34556777888888874 3333444455566777777777665533 22333 2233456666666553 333333
Q ss_pred eccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCC
Q 040616 156 LEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGC 206 (208)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~ 206 (208)
..++ ..++.++.+...+.++...|.-.|-++.-..+.++|+.+|+
T Consensus 236 s~~~------~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi 280 (382)
T PRK14017 236 RLFS------RWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDV 280 (382)
T ss_pred ccCC------HHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCC
Confidence 2222 24677777777899998888876666656667788888775
No 398
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=23.82 E-value=4.7e+02 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 118 GELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 118 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
+.++.|+++|.+-++|=||-+.+++.++++.
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 209 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRA 209 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHc
Confidence 7888999999999999999999999999876
No 399
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.81 E-value=2.9e+02 Score=21.15 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 112 PIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.+.++.+.|+.|++.|.--+| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 456778888999999864444 677666666655554
No 400
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=23.76 E-value=4.5e+02 Score=22.20 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCc---ccEEEeecCCCCCCHHHHHHHHHHHHH-----cCCcceEeeCc
Q 040616 77 CGDPAYLRAACEASLKCLDVDC---IDLYYQHRIDTKIPIEVTIGELKRLVE-----EGKIKHIDLSE 136 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~---iDl~~lh~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvs~ 136 (208)
..+.+.+.+++.+.++.....+ +.+-++=......+.++..+.++.+.+ .+.|-.||++.
T Consensus 103 g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G 170 (345)
T cd01321 103 EYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVG 170 (345)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3667777777776666664333 454444444455555555554444443 34577788765
No 401
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=23.69 E-value=2.4e+02 Score=19.29 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=40.3
Q ss_pred hcceEEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcCCC---cccEEEeecCC-CCCCHHHHHHHHHHHHH
Q 040616 55 LLARVKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLDVD---CIDLYYQHRID-TKIPIEVTIGELKRLVE 125 (208)
Q Consensus 55 ~~g~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d---~iDl~~lh~~~-~~~~~~~~~~~l~~l~~ 125 (208)
.+| +.|+-|++.. ....+.+++.+.+++...... ..|++++-.+. ...+..+..+.|..+.+
T Consensus 43 r~g-~~vsKK~gk~--------AV~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~~l~~ll~ 108 (111)
T PF00825_consen 43 RVG-FSVSKKVGKR--------AVKRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEKELKKLLK 108 (111)
T ss_dssp EEE-EEE-STTSS---------HHHHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHHHHHHHHH
T ss_pred EEE-EEecCccccc--------hhHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 555 6666666641 356788889998888877643 77998888775 34566777776666543
No 402
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.68 E-value=4.4e+02 Score=22.13 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=10.3
Q ss_pred HHHHHHHCCCCeEeC
Q 040616 29 LIHHAIDSGITVLDT 43 (208)
Q Consensus 29 ~l~~A~~~Gi~~~Dt 43 (208)
..+.|.++|+..++-
T Consensus 157 aA~~a~~aGfDgVei 171 (338)
T cd02933 157 AARNAIEAGFDGVEI 171 (338)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334566789998875
No 403
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=23.63 E-value=3e+02 Score=21.19 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhc----CCccEEeeccC
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSE-ASASTIRRAHTI----HPITVVRLEWS 159 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~----~~~~~~q~~~~ 159 (208)
+.++...++....|.+.. ....+..+.+.|++|++.|. .+|+.+ -+...++.+++. ..|+++-.--+
T Consensus 69 ~~~~~~~~~~~~~~~~~~------~~~~~~gv~e~L~~L~~~g~--~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~ 140 (220)
T COG0546 69 ELVERLREEFLTAYAELL------ESRLFPGVKELLAALKSAGY--KLGIVTNKPERELDILLKALGLADYFDVIVGGDD 140 (220)
T ss_pred HHHHHHHHHHHHHHHhhc------cCccCCCHHHHHHHHHhCCC--eEEEEeCCcHHHHHHHHHHhCCccccceEEcCCC
Confidence 444444445544445444 22456778899999999994 555544 444556666554 23444444111
Q ss_pred cCCCCc-cccHHHHHHHhCCc
Q 040616 160 LRSRDV-EEEIVPTCRELGIG 179 (208)
Q Consensus 160 ~~~~~~-~~~~l~~~~~~gi~ 179 (208)
...+.+ ...++..|.+.|+.
T Consensus 141 ~~~~KP~P~~l~~~~~~~~~~ 161 (220)
T COG0546 141 VPPPKPDPEPLLLLLEKLGLD 161 (220)
T ss_pred CCCCCcCHHHHHHHHHHhCCC
Confidence 122211 23677777777776
No 404
>PRK13870 transcriptional regulator TraR; Provisional
Probab=23.50 E-value=3.7e+02 Score=21.18 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc---------
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI--------- 148 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------- 148 (208)
.+-+.+.+.++...+++|.+++-...+..+ +.+-++||+.+-.+...+.
T Consensus 16 ~~~~~~~~~l~~~~~~~Gf~~~~y~~~~~~----------------------~~~~~~nyP~~W~~~Y~~~~y~~~DPvv 73 (234)
T PRK13870 16 GDECILKTGLADIADHFGFTGYAYLHIQHR----------------------HITAVTNYHREWQSVYFDKKFDALDPVV 73 (234)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEecCCC----------------------CeeEeCCCCHHHHHHHHHCCCcccChHH
Confidence 356778899999999999887744323111 2344677776665555443
Q ss_pred -------CCccEEeeccCcCCCCccccHHHHHHHhCCc
Q 040616 149 -------HPITVVRLEWSLRSRDVEEEIVPTCRELGIG 179 (208)
Q Consensus 149 -------~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~ 179 (208)
.|+.+.......-....+..+++.++++|+.
T Consensus 74 ~~~~~~~~p~~W~~~~~~~~~~~~~~~~~~~a~~~Gl~ 111 (234)
T PRK13870 74 KRARSRKHIFTWSGEQERPRLSKDERAFYAHAADFGIR 111 (234)
T ss_pred HHHhcCCCCeecCcccccccCCHHHHHHHHHHHHcCCC
Confidence 3444433222111112244788999998753
No 405
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=23.50 E-value=44 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHcCCCcccEEEeecC
Q 040616 89 ASLKCLDVDCIDLYYQHRI 107 (208)
Q Consensus 89 ~sL~~L~~d~iDl~~lh~~ 107 (208)
+.|+.||+||||===+=.|
T Consensus 87 qiLealgVD~IDESEVLTp 105 (208)
T PF01680_consen 87 QILEALGVDYIDESEVLTP 105 (208)
T ss_dssp HHHHHTT-SEEEEETTS--
T ss_pred hhHHHhCCceecccccccc
Confidence 6799999999996433333
No 406
>PRK08727 hypothetical protein; Validated
Probab=23.40 E-value=2.5e+02 Score=22.05 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCC----CHHHHHHHHHHHHHcCCcceEeeCcccHHHHHH----HhhcCCccEEee
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTKI----PIEVTIGELKRLVEEGKIKHIDLSEASASTIRR----AHTIHPITVVRL 156 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~----~~~~~~~~~~q~ 156 (208)
..+.+.++++ ...|++.+...+... .....++.+...++.| ..-|-.|+..+..+.. +.+... ....+
T Consensus 82 ~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~SRl~-~~~~~ 157 (233)
T PRK08727 82 GRLRDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRSRLA-QCIRI 157 (233)
T ss_pred hhHHHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHHHHh-cCceE
Confidence 3344555555 457899998764322 1234566667776665 4567778877776533 332211 12344
Q ss_pred ccCcCCCCccccHHHH-HHHhCC
Q 040616 157 EWSLRSRDVEEEIVPT-CRELGI 178 (208)
Q Consensus 157 ~~~~~~~~~~~~~l~~-~~~~gi 178 (208)
++++.+......++.. |+++|+
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHcCC
Confidence 6666665323355553 666654
No 407
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.39 E-value=5e+02 Score=22.61 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=31.3
Q ss_pred cccEEEeecCCCCCC----HHHHHHHHH-HHHH-------cCCcceEeeCc--cc-HHHHHHHhhcCCccEEe
Q 040616 98 CIDLYYQHRIDTKIP----IEVTIGELK-RLVE-------EGKIKHIDLSE--AS-ASTIRRAHTIHPITVVR 155 (208)
Q Consensus 98 ~iDl~~lh~~~~~~~----~~~~~~~l~-~l~~-------~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~q 155 (208)
.+.++.++.|..... .+.++++|- .+.. .+.|.-||-.+ .. .+++.++++...+.++.
T Consensus 120 ~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 120 DFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 478899988866533 233444443 2222 23455554222 12 56777777775555543
No 408
>PRK09061 D-glutamate deacylase; Validated
Probab=23.37 E-value=5.4e+02 Score=23.01 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce---------EEEEeecceecCCCCccCCCChHHHHHHHHHHHHHcC
Q 040616 25 CMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR---------VKLTTKFGIRYEDGKYSYCGDPAYLRAACEASLKCLD 95 (208)
Q Consensus 25 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~---------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 95 (208)
+..++++.|++.|...|=+...|-.+.+...+-+ ..|........ ..++....+++++.++...
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS-------NVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------cCCchhHHHHHHHHHHHHH
Confidence 3677788899999999976555532222221221 45555543211 0112222334444443322
Q ss_pred CCcccEEEeecCC-CCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 96 VDCIDLYYQHRID-TKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 96 ~d~iDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
..-.-+.+.|-.. ...+..+.++.+++++++|.--..-++.
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P 284 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYP 284 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecC
Confidence 1113366667542 1234577788889999988544334443
No 409
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.35 E-value=4.3e+02 Score=21.86 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 87 CEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 87 ~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
++..|..+.-+|.|++++..- ..+.+.+-++.+.+.|+--=+|.+.|+.+++.++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 334454444457888877653 2345666667777777777777777777776665543
No 410
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.18 E-value=5.2e+02 Score=24.90 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEeeCcccHHHHHHHhhcCCccEEee
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKHIDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
+.+.||+-.+.....--....-+|+|+..+.. ..+..++|.+..++ ..+..|.+++.. +.|...+.. -+..+
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l--t~~a~NaLLK~LEEpP~~~~fIl~tt~~-~kLl~TIrS---Rc~~v 174 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMV--TPQGFNALLKIVEEPPEHLKFIFATTEP-DKVIGTIRS---RTHHY 174 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhc--CHHHHHHHHHHHhCCCCCeEEEEEeCCh-hhhhHHHHh---heeEE
Confidence 45666664444332222345678888876443 35778888888887 889999988643 333332221 24556
Q ss_pred ccCcCCCCcc-ccHHHHHHHhCCcE
Q 040616 157 EWSLRSRDVE-EEIVPTCRELGIGI 180 (208)
Q Consensus 157 ~~~~~~~~~~-~~~l~~~~~~gi~v 180 (208)
+|.++....- .-+.+.|++.|+.+
T Consensus 175 ~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 175 PFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 6776655211 12344555567653
No 411
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=23.15 E-value=5.7e+02 Score=23.75 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCcceEeeCcccH--HHHHHHhhcCCccEEeeccCcCCC--------CccccHHHHHHHhCCcEEE
Q 040616 113 IEVTIGELKRLVEEGKIKHIDLSEASA--STIRRAHTIHPITVVRLEWSLRSR--------DVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~l~~~~~~gi~v~a 182 (208)
.....+.+..+++.|- .|++.+|.. ..+..+ ...+|+++.+.-+.... ..-..++..|++.||.+++
T Consensus 677 ~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l-~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 677 DTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRL-VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHH-hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 4567788889999998 777776543 233333 33467777776554321 1233788999999999998
Q ss_pred cc
Q 040616 183 YS 184 (208)
Q Consensus 183 ~~ 184 (208)
-.
T Consensus 754 ~g 755 (799)
T PRK11359 754 EG 755 (799)
T ss_pred Ec
Confidence 54
No 412
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=23.12 E-value=69 Score=21.19 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCcceEeeCcc
Q 040616 114 EVTIGELKRLVEEGKIKHIDLSEA 137 (208)
Q Consensus 114 ~~~~~~l~~l~~~G~ir~iGvs~~ 137 (208)
....++|..|+++|.|.-+-+.+.
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 567889999999999997777664
No 413
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=23.01 E-value=3.9e+02 Score=24.50 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.......+++.+.|+.||.++ |-.... ...++...+..++|.++|++- +|..+.+++++....
T Consensus 97 r~~~e~~~~I~~dL~wLGi~~-D~~~~q----S~y~~~~ye~A~~Li~~G~AY---~C~cs~eei~~~R~~ 159 (574)
T PTZ00437 97 TEEQVYIDAIMEMVKWMGWKP-DWVTFS----SDYFDQLHEFAVQLIKDGKAY---VDHSTPDELKQQREQ 159 (574)
T ss_pred ccChHHHHHHHHHHHHcCCCC-CCCCcC----chhHHHHHHHHHHHHHcCCEE---EcCCCHHHHHHHhhc
Confidence 345667888999999999885 533211 123455778888999999976 577888888777654
No 414
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.94 E-value=4.7e+02 Score=22.12 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=48.8
Q ss_pred cCCCChHHHHHHHHHHHHHcCC--CcccEEEeec-CCCCCCHHHHHHHHHHHHH-cCC---cceEeeCccc-HHHHHHHh
Q 040616 75 SYCGDPAYLRAACEASLKCLDV--DCIDLYYQHR-IDTKIPIEVTIGELKRLVE-EGK---IKHIDLSEAS-ASTIRRAH 146 (208)
Q Consensus 75 ~~~~~~~~i~~~~~~sL~~L~~--d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~~~-~~~l~~~~ 146 (208)
....+++++.+++.......++ ..++-+.+-. =+|....+.+.+++..+.+ .|. .|.+.+|+.. ...++++.
T Consensus 118 ~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~ 197 (343)
T PRK14468 118 GRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLA 197 (343)
T ss_pred CCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHH
Confidence 4678889999998877766654 3466666654 4555567888888888843 443 2577787642 44566666
Q ss_pred hc
Q 040616 147 TI 148 (208)
Q Consensus 147 ~~ 148 (208)
+.
T Consensus 198 ~~ 199 (343)
T PRK14468 198 EE 199 (343)
T ss_pred Hh
Confidence 53
No 415
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.91 E-value=1.3e+02 Score=24.44 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH-HcCCcceEeeCcccH------HHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEc
Q 040616 113 IEVTIGELKRLV-EEGKIKHIDLSEASA------STIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAY 183 (208)
Q Consensus 113 ~~~~~~~l~~l~-~~G~ir~iGvs~~~~------~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~ 183 (208)
.+++++.+.+++ +.-.+.-|=++=+|+ +.+.+..+...++-+-++==|+.. ..++.+.|+++|+.++-.
T Consensus 71 ~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee--~~~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 71 LEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE--SEELREAAKKHGLDLIPL 146 (259)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG--HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHH--HHHHHHHHHHcCCeEEEE
Confidence 345566666666 444444444443332 222222222233333332222222 347888889999887754
No 416
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=22.78 E-value=1.7e+02 Score=23.98 Aligned_cols=39 Identities=8% Similarity=-0.090 Sum_probs=22.7
Q ss_pred cHHHHHHHhCCcEEEcccCcccccCCCCCcccchhhcCC
Q 040616 168 EIVPTCRELGIGIVAYSLLGRGFLSSGPKLIHLSATKGC 206 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~a~~~~~ 206 (208)
.+...|+..||++++.+|.+.-.-.++....++.+++|+
T Consensus 73 ~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gI 111 (296)
T PRK14569 73 RVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRM 111 (296)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCC
Confidence 466777777777777666655444444444444444443
No 417
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=22.76 E-value=2.9e+02 Score=24.01 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=27.4
Q ss_pred HHHHHHHHHHc---CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 040616 84 RAACEASLKCL---DVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG 127 (208)
Q Consensus 84 ~~~~~~sL~~L---~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 127 (208)
.+.+++..++| +.+.+|++++-+|- ..++|+.+..+.++.++
T Consensus 272 ~~dl~~~~~~l~~~~~~~~D~V~lGcPH--~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 272 DADLEEVYEELNTAGDEKVDLVALGCPH--LSLEELREIAELLEGRK 316 (400)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEECCCC--CCHHHHHHHHHHHhCCC
Confidence 45566666666 56789999998873 34566666555555444
No 418
>PRK15005 universal stress protein F; Provisional
Probab=22.57 E-value=2.7e+02 Score=19.29 Aligned_cols=28 Identities=4% Similarity=0.163 Sum_probs=20.5
Q ss_pred cCCCCccccHHHHHHHhCCcEEEcccCc
Q 040616 160 LRSRDVEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 160 ~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
.....+.+.++++++++++.++..+.=.
T Consensus 90 v~~G~p~~~I~~~a~~~~~DLIV~Gs~~ 117 (144)
T PRK15005 90 VEEGSPKDRILELAKKIPADMIIIASHR 117 (144)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3334446689999999999988877543
No 419
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.49 E-value=1.2e+02 Score=26.93 Aligned_cols=66 Identities=5% Similarity=0.016 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCCcce----EeeCcccHHHHHHHhhc---CCccEEeeccCcCCCCccccHHHHHHHhCC
Q 040616 111 IPIEVTIGELKRLVEEGKIKH----IDLSEASASTIRRAHTI---HPITVVRLEWSLRSRDVEEEIVPTCRELGI 178 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi 178 (208)
...++..++++.+++.|..-. +|+-+-+.+.+++.++. .+++.. .++++.+.+..++.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCce--EEEEecCCCCcHHHHHHHhhcc
Confidence 456778889999999987433 34445666666665544 344443 4466666666688888877764
No 420
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=22.37 E-value=1.7e+02 Score=23.56 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHCCCCeEeC
Q 040616 22 PESCMIALIHHAIDSGITVLDT 43 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dt 43 (208)
+.+-+.-+-+.+.++|-.+.-|
T Consensus 17 ~rSIAwGIAk~l~~~GAeL~fT 38 (259)
T COG0623 17 NRSIAWGIAKALAEQGAELAFT 38 (259)
T ss_pred cccHHHHHHHHHHHcCCEEEEE
Confidence 3444666666677778776654
No 421
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=22.20 E-value=5.3e+02 Score=22.46 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHH-HhhcCCccEE
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRR-AHTIHPITVV 154 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~-~~~~~~~~~~ 154 (208)
.+.+.+.+...+++..+ +-+|.+-+|. .-.++.++.+++.|++- |+.+-...-+.. .+...
T Consensus 136 ~~~t~d~~~~~v~~qa~----~GVdfmTIHa-------GV~~~~~~~~~~~~R~~--giVSRGGsi~a~Wml~~~----- 197 (432)
T COG0422 136 EDLTEDDFFDTVEKQAE----QGVDFMTIHA-------GVLLEYVPRTKRSGRVT--GIVSRGGSIMAAWMLHNH----- 197 (432)
T ss_pred hhCCHHHHHHHHHHHHH----hCCcEEEeeh-------hhhHHHHHHHHhcCcee--eeeccchHHHHHHHHHcC-----
Confidence 35667777777666655 4588999995 33577888899988754 544333332222 22221
Q ss_pred eeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCC
Q 040616 155 RLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSS 193 (208)
Q Consensus 155 q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~ 193 (208)
.=||+..+ -+.+++.|+++++.+.--..|--|.+.+
T Consensus 198 --~ENply~~-fd~lleI~k~yDvtlSLGDglRPG~i~D 233 (432)
T COG0422 198 --KENPLYEH-FDELLEIFKEYDVTLSLGDGLRPGCIAD 233 (432)
T ss_pred --CcCchhhh-HHHHHHHHHHhCeeeeccCCCCCCcccC
Confidence 12344333 2477888888887776655555555554
No 422
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.16 E-value=5.4e+02 Score=22.58 Aligned_cols=108 Identities=9% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEee--CcccHHHHHHHhhcCCccE
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDL--SEASASTIRRAHTIHPITV 153 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~ 153 (208)
...+++.+.+.++...++.+ .+.-+++.......+...+.+.++.+++.|. ....- .+.+.+.++.+.+. .+..
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~--~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i-~~~~~~~~~~~~e~l~~l~~a-G~~~ 300 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFP--EVREFFFDDDTFTDDKPRAEEIARKLGPLGV-TWSCNARANVDYETLKVMKEN-GLRL 300 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcC--CCcEEEEeCCCCCCCHHHHHHHHHHHhhcCc-eEEEEecCCCCHHHHHHHHHc-CCCE
Confidence 34678889988888887751 1333444443333333334444455555543 21111 23455555544443 2233
Q ss_pred EeeccCcCC--------CC----ccccHHHHHHHhCCcEEEcccCc
Q 040616 154 VRLEWSLRS--------RD----VEEEIVPTCRELGIGIVAYSLLG 187 (208)
Q Consensus 154 ~q~~~~~~~--------~~----~~~~~l~~~~~~gi~v~a~~pl~ 187 (208)
+.+-+--.+ .. .-.+.++.|+++||.+.+.--++
T Consensus 301 v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 301 LLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 333221111 11 11256777788888766644443
No 423
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=22.16 E-value=4.1e+02 Score=21.19 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=39.7
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-----CCHHHHHHHHHHHHHcCCcceEeeC
Q 040616 75 SYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-----IPIEVTIGELKRLVEEGKIKHIDLS 135 (208)
Q Consensus 75 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~ir~iGvs 135 (208)
....+...+.+.+++--..++ ..+++|+==+.+.+ ...+++.+.+.++.+--.++-.|+=
T Consensus 97 ihSlDr~klA~~l~kra~~~~-~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM 161 (228)
T COG0325 97 IHSLDRLKLAKELNKRALELP-KPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLM 161 (228)
T ss_pred eeecCHHHHHHHHHHHHHhCC-CCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEE
Confidence 356777777888877444444 35676554444322 3467788888888888888888864
No 424
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=22.09 E-value=4.3e+02 Score=24.21 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhh
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHT 147 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 147 (208)
........+++.+.|+.||.+ .|-+ +-....++...+.+++|.++|+.- +|..+.+++.+...
T Consensus 138 ~R~~~e~~~~I~edL~wLGi~-~d~~----~~qSd~~~~y~~~a~~Li~~G~AY---~C~cs~eei~~~r~ 200 (560)
T TIGR00463 138 RRVKPEAYDMILEDLDWLGVK-GDEV----VYQSDRIEEYYDYCRKLIEMGKAY---VCDCPPEEFRELRN 200 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCC-CCcc----ccccccHHHHHHHHHHHHHcCCce---eecCCHHHHHHHHh
Confidence 334455778888999999988 4632 222345677889999999999965 57778888877643
No 425
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=22.05 E-value=2.4e+02 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=20.0
Q ss_pred cccHHHHHHHhCCcEEEcccCcccccCCC
Q 040616 166 EEEIVPTCRELGIGIVAYSLLGRGFLSSG 194 (208)
Q Consensus 166 ~~~~l~~~~~~gi~v~a~~pl~~G~l~~~ 194 (208)
++++..+-+..|++++. +|++.|.|.++
T Consensus 234 e~~l~~~Ve~~glPflp-tpMgKGll~d~ 261 (571)
T KOG1185|consen 234 EDQLRKFVETTGLPFLP-TPMGKGLLPDN 261 (571)
T ss_pred HHHHHHHHHhcCCCccc-CcccccCCCCC
Confidence 55777777777777765 57777777654
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.04 E-value=1.5e+02 Score=21.54 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEeeCc
Q 040616 109 TKIPIEVTIGELKRLVEEGKIKHIDLSE 136 (208)
Q Consensus 109 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 136 (208)
+...+..+++.|+.|.+.|.|+.+=+.+
T Consensus 51 p~islaTVYr~L~~l~e~Glv~~~~~~~ 78 (145)
T COG0735 51 PGISLATVYRTLKLLEEAGLVHRLEFEG 78 (145)
T ss_pred CCCCHhHHHHHHHHHHHCCCEEEEEeCC
Confidence 4456788999999999999999998876
No 427
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=22.04 E-value=66 Score=18.78 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCeEe
Q 040616 24 SCMIALIHHAIDSGITVLD 42 (208)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~D 42 (208)
+....++-.|++.|.+.||
T Consensus 29 ~~sl~~Li~aL~~G~~~F~ 47 (47)
T PF14615_consen 29 DKSLPLLIDALQQGTDMFS 47 (47)
T ss_pred chhHHHHHHHHHhcccccC
Confidence 4467888889999999885
No 428
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.01 E-value=5.1e+02 Score=22.73 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHC-CCCeEeCCCC--C-CCC-chhhhcce---------EEEEeecceecCCCCccCCCChHHHHHHH
Q 040616 22 PESCMIALIHHAIDS-GITVLDTSNV--Y-GPH-TNEILLAR---------VKLTTKFGIRYEDGKYSYCGDPAYLRAAC 87 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~-Gi~~~DtA~~--Y-g~g-~~e~~~g~---------~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 87 (208)
+.++..++++..-+. +++-+--+.. . -.. .-+..+.. +-|.|+... ..|..+...+
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pv----------v~P~RIT~el 208 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPV----------VLPQRITDEL 208 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccc----------ccccccCHHH
Confidence 567778888777664 8874322211 1 100 01222232 446666543 2244555556
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEee-------CcccHHHHHHHhhc
Q 040616 88 EASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDL-------SEASASTIRRAHTI 148 (208)
Q Consensus 88 ~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-------s~~~~~~l~~~~~~ 148 (208)
-..|++.+ .-.+.+|.-.+.....++.+|+..|++.|.. ++. -|.+++.+.++.+.
T Consensus 209 l~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~~~ 271 (417)
T TIGR03820 209 VAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLVHK 271 (417)
T ss_pred HHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHHHH
Confidence 66666665 3455678665555678899999999999964 332 25677777777654
No 429
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.93 E-value=2.5e+02 Score=23.21 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCcccEEEeecC--CCCCCHHHHHHHH-HHHHHcCCcceEeeCcccHHHHHHHhhc-------CCccEE
Q 040616 85 AACEASLKCLDVDCIDLYYQHRI--DTKIPIEVTIGEL-KRLVEEGKIKHIDLSEASASTIRRAHTI-------HPITVV 154 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~--~~~~~~~~~~~~l-~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~~~~~ 154 (208)
.-.-.||..+.-|-. ++-+|.+ |.+.+.+..++-+ +-.++-|....+|++.-+.+-++++.+. .|+...
T Consensus 160 ai~lasL~k~~e~g~-~L~V~g~GsDGEL~~eyllrriseia~egGlLg~~gl~r~d~ell~~l~~~v~TEAS~ipl~Af 238 (328)
T COG4034 160 AISLASLAKVEEDGV-ELAVMGPGSDGELSREYLLRRISEIAREGGLLGTVGLDRRDVELLEKLVKDVTTEASKIPLRAF 238 (328)
T ss_pred HHHHHHHHhhcccce-EEEEEecCCCCceeHHHHHHHHHHHHhhCCeeeeeccchhHHHHHHHHHHHHhhhhhhccHHHh
Confidence 334567778876544 7777776 3445677777666 4455677888899888888888887664 344444
Q ss_pred eeccCcC
Q 040616 155 RLEWSLR 161 (208)
Q Consensus 155 q~~~~~~ 161 (208)
.-+|.+.
T Consensus 239 ~Ge~G~~ 245 (328)
T COG4034 239 KGEYGPA 245 (328)
T ss_pred cccccch
Confidence 4444443
No 430
>PRK06740 histidinol-phosphatase; Validated
Probab=21.82 E-value=4.8e+02 Score=21.87 Aligned_cols=96 Identities=8% Similarity=0.001 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCC-----C--------C----HHHHHHHHHHHHHcCCcceEeeCc------ccH--
Q 040616 85 AACEASLKCLDVDCIDLYYQHRIDTK-----I--------P----IEVTIGELKRLVEEGKIKHIDLSE------ASA-- 139 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh~~~~~-----~--------~----~~~~~~~l~~l~~~G~ir~iGvs~------~~~-- 139 (208)
..+++.|+....||+ +.-+|..+.. . + .....+.+.++.+.|.+..||=-. +.+
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 445566766777877 7888875310 0 1 122457888888999988887221 111
Q ss_pred ----HHHHHHhhc-----CCccEEee-cc--CcCCCCccccHHHHHHHhCCcEE
Q 040616 140 ----STIRRAHTI-----HPITVVRL-EW--SLRSRDVEEEIVPTCRELGIGIV 181 (208)
Q Consensus 140 ----~~l~~~~~~-----~~~~~~q~-~~--~~~~~~~~~~~l~~~~~~gi~v~ 181 (208)
..++++++. ..+.+|-. .+ .....-+...+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEE
Confidence 133333222 22334432 11 11111234579999999999865
No 431
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=21.76 E-value=4.7e+02 Score=21.70 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=67.1
Q ss_pred EEEEeecceecCC---------CCccCCCChHHHHHHHHHHHHHcCCCcc----cEEEe-ecCCCC-CCHHHHHHHHHHH
Q 040616 59 VKLTTKFGIRYED---------GKYSYCGDPAYLRAACEASLKCLDVDCI----DLYYQ-HRIDTK-IPIEVTIGELKRL 123 (208)
Q Consensus 59 ~~i~tK~~~~~~~---------~~~~~~~~~~~i~~~~~~sL~~L~~d~i----Dl~~l-h~~~~~-~~~~~~~~~l~~l 123 (208)
+++.|+..++.+. .......+++.+.++++..+++.+..+. .+|.- -..|+. .+.+...+.++.+
T Consensus 18 ~i~~srGC~~~~~g~C~FC~~~~~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l 97 (313)
T TIGR01210 18 IILRTRGCYWAREGGCYMCGYLADSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKI 97 (313)
T ss_pred EEEeCCCCCCCCCCcCccCCCCCCCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHH
Confidence 5677777665321 1111245888999999999999875532 22211 011222 2334444455566
Q ss_pred HHcCCcceEeeCc----ccHHHHHHHhhcCCcc-EEeeccCc---------CCCC----ccccHHHHHHHhCCcEEEccc
Q 040616 124 VEEGKIKHIDLSE----ASASTIRRAHTIHPIT-VVRLEWSL---------RSRD----VEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 124 ~~~G~ir~iGvs~----~~~~~l~~~~~~~~~~-~~q~~~~~---------~~~~----~~~~~l~~~~~~gi~v~a~~p 185 (208)
.+.+.++.|.+.. .+.+.+..+.+.+ .. .+.+-+-- +++. .-...++.++++|+.+.++--
T Consensus 98 ~~~~~~~~i~~esrpd~i~~e~L~~l~~aG-~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 98 AQRDNLKEVVVESRPEFIDEEKLEELRKIG-VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HhcCCcceEEEEeCCCcCCHHHHHHHHHcC-CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 6666455554432 3455566655432 22 12221111 1111 112577788889999887766
Q ss_pred Ccc
Q 040616 186 LGR 188 (208)
Q Consensus 186 l~~ 188 (208)
++.
T Consensus 177 ~G~ 179 (313)
T TIGR01210 177 FKP 179 (313)
T ss_pred ecC
Confidence 653
No 432
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=21.72 E-value=1.4e+02 Score=22.25 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=17.0
Q ss_pred cHHHHHHHhCCcEEEcccC
Q 040616 168 EIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~pl 186 (208)
-++-.|.++|+++.-|+|.
T Consensus 84 villa~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 84 VAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHcCCCEEEECHH
Confidence 4688899999999999996
No 433
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.70 E-value=1.8e+02 Score=22.99 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=40.7
Q ss_pred HHHHHHH-HHHHcCCcceEeeCcccHHHHHHHhhcCC-ccEE-eec------------------cCcCCCCccccHHHHH
Q 040616 115 VTIGELK-RLVEEGKIKHIDLSEASASTIRRAHTIHP-ITVV-RLE------------------WSLRSRDVEEEIVPTC 173 (208)
Q Consensus 115 ~~~~~l~-~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~-q~~------------------~~~~~~~~~~~~l~~~ 173 (208)
+..+.+. .+++.|.-..+=++.|+++.+..+.+..| +.+. ... +++........+++.+
T Consensus 148 ~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 227 (263)
T cd08567 148 EFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTLGNLPRAAKKLGADIWSPYFTLVTKELVDEA 227 (263)
T ss_pred HHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcccCHHHHHHHhCCcEEecchhhcCHHHHHHH
Confidence 3444443 34456666777788999887777655422 1010 000 0111111234788999
Q ss_pred HHhCCcEEEccc
Q 040616 174 RELGIGIVAYSL 185 (208)
Q Consensus 174 ~~~gi~v~a~~p 185 (208)
+++|+.+.+|..
T Consensus 228 ~~~G~~v~vwtv 239 (263)
T cd08567 228 HALGLKVVPWTV 239 (263)
T ss_pred HHCCCEEEEecC
Confidence 999999999875
No 434
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.65 E-value=3.2e+02 Score=20.87 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE 126 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 126 (208)
-...-.+.+++.|..||+| +.| .+.+++...+++|+.+
T Consensus 102 vGqKk~K~iEq~L~elgv~---------~~P-mPTe~Ic~~fneLRsd 139 (176)
T PF05499_consen 102 VGQKKTKAIEQFLQELGVD---------LNP-MPTEEICQEFNELRSD 139 (176)
T ss_pred hhhHHHHHHHHHHHHcCCC---------CCC-CChHHHHHHHHHHHHH
Confidence 3456778999999999987 333 6678888888888765
No 435
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=21.65 E-value=4.8e+02 Score=24.15 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCccc-EEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 77 CGDPAYLRAACEASLKCLDVDCID-LYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iD-l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
........+++.+.|+.||.++=. .++ . ...++...+++++|.++|+.- +|..+.+++++..
T Consensus 97 ~R~~~e~~d~IleDL~WLGl~wDe~~~~-Q----Sdr~d~y~e~a~~Li~~G~AY---~c~cs~eei~~~r 159 (601)
T PTZ00402 97 SKEKEHFEQAILDDLATLGVSWDVGPTY-S----SDYMDLMYEKAEELIKKGLAY---CDKTPREEMQKCR 159 (601)
T ss_pred cccCHHHHHHHHHHHHHCCCCCCCceee-c----cccHHHHHHHHHHHHHcCCEE---EecCCHHHHHHHH
Confidence 345566788999999999987422 221 1 133667789999999999965 7888888887664
No 436
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=21.49 E-value=2.5e+02 Score=19.61 Aligned_cols=51 Identities=27% Similarity=0.207 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIK 130 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 130 (208)
...+-+-+...++.-....+-=-.+-.|+..--.++..+.|.+|+++||+.
T Consensus 55 ~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 55 RSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred cccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 445666666666665544441122334555555688999999999999984
No 437
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.47 E-value=5.3e+02 Score=24.11 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEeeCcccHHHHHHHhhcCCccEEee
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKHIDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
+.+.+|+-++....+-.....-+|+|+..+.. ..+...+|-+..++ +.++.|.+++.....+..+.+ -|.++
T Consensus 100 ~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--s~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S----RC~~~ 173 (647)
T PRK07994 100 KVEDTRELLDNVQYAPARGRFKVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS----RCLQF 173 (647)
T ss_pred CHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--CHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh----hheEe
Confidence 34556555444332222235568888866432 35678888888888 899999998854433333333 36778
Q ss_pred ccCcCCC
Q 040616 157 EWSLRSR 163 (208)
Q Consensus 157 ~~~~~~~ 163 (208)
.+.++..
T Consensus 174 ~f~~Ls~ 180 (647)
T PRK07994 174 HLKALDV 180 (647)
T ss_pred eCCCCCH
Confidence 8888876
No 438
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.44 E-value=74 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=15.5
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHCCCCe
Q 040616 5 GQGLRCMGMFAFYGPPKPESCMIALIHHAIDSGITV 40 (208)
Q Consensus 5 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~ 40 (208)
++|+||+.+ .+++...+.++.|.++||..
T Consensus 42 K~g~Gt~~l-------~~~~~l~eki~l~~~~gV~v 70 (244)
T PF02679_consen 42 KFGWGTSAL-------YPEEILKEKIDLAHSHGVYV 70 (244)
T ss_dssp EE-TTGGGG-------STCHHHHHHHHHHHCTT-EE
T ss_pred EecCceeee-------cCHHHHHHHHHHHHHcCCeE
Confidence 567777776 24444555555555555553
No 439
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=21.41 E-value=3.8e+02 Score=20.57 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCC----------CCCCCC---ch---hhhcce------EEEEeecceecCCCCccCCCC
Q 040616 22 PESCMIALIHHAIDSGITVLDTS----------NVYGPH---TN---EILLAR------VKLTTKFGIRYEDGKYSYCGD 79 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g---~~---e~~~g~------~~i~tK~~~~~~~~~~~~~~~ 79 (208)
+.++..+..+.+.++|+..||-- ..||.. .. .+.+.. +-++.|+...+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCc
Confidence 45677888888889999988742 224310 00 011111 34555554321 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEeecCCCCC--CHHHHHHHHHHHHHcCCcceEeeCcc-cHHHHHHHhhcCCccEEee
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQHRIDTKI--PIEVTIGELKRLVEEGKIKHIDLSEA-SASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 156 (208)
+...+ +-+.|+..| +|.+.+|...... .....|+.+.++++.-.+--++.... +.+++.++++....+.+++
T Consensus 138 -~~~~~-~~~~l~~~G---vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 138 -EETLE-LAKALEDAG---ASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred -hHHHH-HHHHHHHhC---CCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 12222 222344556 4555666542211 11123666666666655655555443 6777777777656666666
Q ss_pred cc
Q 040616 157 EW 158 (208)
Q Consensus 157 ~~ 158 (208)
--
T Consensus 213 gr 214 (231)
T cd02801 213 GR 214 (231)
T ss_pred cH
Confidence 43
No 440
>PLN02444 HMP-P synthase
Probab=21.36 E-value=4.6e+02 Score=24.08 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhcCCccEEee
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 156 (208)
+.+.+.+.+.+++..+ +=+|.+-+|.- -..+.++.++ + |-.|+-+-...-+...+-.+.
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~G-------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~------ 354 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAG-------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH------ 354 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh-------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC------
Confidence 5667777766666655 44889999963 1344444444 3 566665444333333222211
Q ss_pred ccCcCCCCccccHHHHHHHhCCcEEEcccCcccccCC
Q 040616 157 EWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLSS 193 (208)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~~ 193 (208)
.=||+... -+++++.|+++++.+---.-|--|.+.+
T Consensus 355 kENPlYe~-FD~ileI~k~YDVtlSLGDGLRPG~iaD 390 (642)
T PLN02444 355 KENFAYEH-WDDILDICNQYDIALSIGDGLRPGSIYD 390 (642)
T ss_pred CcCchHHH-HHHHHHHHHHhCeeeeccCCcCCCcccc
Confidence 12333332 2467888888887776555555555554
No 441
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.33 E-value=3.5e+02 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHCCCCeEe
Q 040616 22 PESCMIALIHHAIDSGITVLD 42 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~D 42 (208)
+.+++.++.+...+.|++.+.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iE 45 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLE 45 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEE
Confidence 445555666666666666554
No 442
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.31 E-value=2.3e+02 Score=24.12 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHcCCcceEeeCcccHHH-----HHHHhhc----CCc------------cEEeeccCcCCCCccccH
Q 040616 111 IPIEVTIGELKRLVEEGKIKHIDLSEASAST-----IRRAHTI----HPI------------TVVRLEWSLRSRDVEEEI 169 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-----l~~~~~~----~~~------------~~~q~~~~~~~~~~~~~~ 169 (208)
....+++..++++.+.+.++-|.+-.++|-| +++..++ ... ...|-.|+.-++ ..+
T Consensus 139 vs~~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~r---~~i 215 (377)
T COG3454 139 VSHPATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPNR---QAI 215 (377)
T ss_pred cCChhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccchH---HHH
Confidence 4456778888888888888888887766532 3333222 001 112334444444 479
Q ss_pred HHHHHHhCCcEEEc
Q 040616 170 VPTCRELGIGIVAY 183 (208)
Q Consensus 170 l~~~~~~gi~v~a~ 183 (208)
.+.|+++||.+-..
T Consensus 216 ~~~c~~rgI~lASH 229 (377)
T COG3454 216 AALCRERGIALASH 229 (377)
T ss_pred HHHHHHcCCceecC
Confidence 99999999987653
No 443
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=21.25 E-value=4.1e+02 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=13.4
Q ss_pred cHHHHHHHhCCcEEEcccC
Q 040616 168 EIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a~~pl 186 (208)
+++++|+++++.++.=...
T Consensus 224 ~l~~~~~~~~i~lI~DEiY 242 (447)
T PLN02607 224 DILDFVVRKNIHLVSDEIY 242 (447)
T ss_pred HHHHHHHHCCCEEEEeccc
Confidence 6778888888888754433
No 444
>PRK04132 replication factor C small subunit; Provisional
Probab=21.21 E-value=6.5e+02 Score=24.42 Aligned_cols=95 Identities=9% Similarity=0.125 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHHcCCC--cccEEEeecCCCCCCHHHHHHHHHHHHHc--CCcceEeeCcccHHHHHHHhhcCCccEE
Q 040616 79 DPAYLRAACEASLKCLDVD--CIDLYYQHRIDTKIPIEVTIGELKRLVEE--GKIKHIDLSEASASTIRRAHTIHPITVV 154 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d--~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 154 (208)
+.+.+++.++.....-... ..=++++...+... .+...+|....++ +.++.|.+||.....+..+.+ -|.
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS----RC~ 682 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALT--QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS----RCA 682 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC--HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh----hce
Confidence 4566777666554332222 23478887765433 5678889888886 999999999965433433332 255
Q ss_pred eeccCcCCCCccc-cHHHHHHHhCCc
Q 040616 155 RLEWSLRSRDVEE-EIVPTCRELGIG 179 (208)
Q Consensus 155 q~~~~~~~~~~~~-~~l~~~~~~gi~ 179 (208)
.++|.++....-. .+...|++.|+.
T Consensus 683 ~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 683 IFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6677766542111 233445555654
No 445
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.19 E-value=3.6e+02 Score=22.88 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=39.5
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-cCC---cceEeeCc
Q 040616 75 SYCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVE-EGK---IKHIDLSE 136 (208)
Q Consensus 75 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvs~ 136 (208)
....+++.+.+++....+..+.++| +++-.-+|...++++.+++..+.+ .|. .+++-||+
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsT 191 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVST 191 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEEC
Confidence 3567889999888887766554433 444434455567788888888875 554 35666654
No 446
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.01 E-value=4.2e+02 Score=20.91 Aligned_cols=91 Identities=9% Similarity=-0.027 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHH-HHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEee
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKR-LVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~-l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 156 (208)
+++...+. -+.|-+-|+..+.+=+ - .....+.++.|.+ ..++.-=-.||+.+ .+.++++.+++..- ++
T Consensus 25 ~~~~a~~~-~~al~~gGi~~iEiT~---~--tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA----~F 94 (222)
T PRK07114 25 DVEVAKKV-IKACYDGGARVFEFTN---R--GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGA----NF 94 (222)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeC---C--CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC----CE
Confidence 34444433 3455566666555543 1 1223455555532 22332112588866 68899999988742 22
Q ss_pred ccCcCCCCccccHHHHHHHhCCcEEE
Q 040616 157 EWSLRSRDVEEEIVPTCRELGIGIVA 182 (208)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~gi~v~a 182 (208)
-.+|.. ..+++++|+++||.++-
T Consensus 95 iVsP~~---~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 95 IVTPLF---NPDIAKVCNRRKVPYSP 117 (222)
T ss_pred EECCCC---CHHHHHHHHHcCCCEeC
Confidence 333432 46999999999998873
No 447
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=20.94 E-value=2.2e+02 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=9.6
Q ss_pred cHHHHHHHhCCcEEE
Q 040616 168 EIVPTCRELGIGIVA 182 (208)
Q Consensus 168 ~~l~~~~~~gi~v~a 182 (208)
.+..+|+++|+.++.
T Consensus 254 ~L~~lA~~~~vaVvi 268 (342)
T PLN03186 254 SLQRLADEFGVAVVI 268 (342)
T ss_pred HHHHHHHHcCCEEEE
Confidence 455666677777663
No 448
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.86 E-value=1.3e+02 Score=26.46 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHcCCcce----EeeCcccHHHHHHHhhc---CCccEEeeccCcCCCCccccHHHHHHHhCCcE
Q 040616 111 IPIEVTIGELKRLVEEGKIKH----IDLSEASASTIRRAHTI---HPITVVRLEWSLRSRDVEEEIVPTCRELGIGI 180 (208)
Q Consensus 111 ~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v 180 (208)
...+++.++++.+++.|.--. +|+-+.+.+.+.+.++. .+++.++ ++++.+-+..++.+.++++|.-.
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHCCCcC
Confidence 346677888888888886533 24445666666665554 3444433 45565555668888888887643
No 449
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=20.77 E-value=78 Score=20.77 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEe--ec-------C-CCCCCHHHHHHHHHHHHH
Q 040616 80 PAYLRAACEASLKCLDVDCIDLYYQ--HR-------I-DTKIPIEVTIGELKRLVE 125 (208)
Q Consensus 80 ~~~i~~~~~~sL~~L~~d~iDl~~l--h~-------~-~~~~~~~~~~~~l~~l~~ 125 (208)
.+.++++.+..|+.+|++.-+.+-+ +. | +...+..++.++++++++
T Consensus 10 d~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF~~~~~n~et~~a~~e~~~ 65 (83)
T TIGR02384 10 DEELKKEAYAVFEELGLTPSTAIRMFLKQVIREQGLPFDLRLPNDETLAAIEEIKE 65 (83)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHH
Confidence 3678899999999999875554322 11 1 223345788888888887
No 450
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=20.77 E-value=2.3e+02 Score=25.52 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=39.7
Q ss_pred CCCeEeCCCCCCC-Cchhhhcce--------------------------------EEEEeecceecCCCCccCCCChHHH
Q 040616 37 GITVLDTSNVYGP-HTNEILLAR--------------------------------VKLTTKFGIRYEDGKYSYCGDPAYL 83 (208)
Q Consensus 37 Gi~~~DtA~~Yg~-g~~e~~~g~--------------------------------~~i~tK~~~~~~~~~~~~~~~~~~i 83 (208)
-||.+||-.|-.. |.-|+.++- +++..|+.. ++..|+.+
T Consensus 69 ~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDr--------p~Arp~~V 140 (603)
T COG1217 69 RINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDR--------PDARPDEV 140 (603)
T ss_pred EEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCC--------CCCCHHHH
Confidence 3567788766433 467888776 666677654 35678888
Q ss_pred HHHHHHHHHHcCC--CcccEEEe
Q 040616 84 RAACEASLKCLDV--DCIDLYYQ 104 (208)
Q Consensus 84 ~~~~~~sL~~L~~--d~iDl~~l 104 (208)
-.++-+.+-+|+- |.+|+=.+
T Consensus 141 vd~vfDLf~~L~A~deQLdFPiv 163 (603)
T COG1217 141 VDEVFDLFVELGATDEQLDFPIV 163 (603)
T ss_pred HHHHHHHHHHhCCChhhCCCcEE
Confidence 8888888888873 35554333
No 451
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=20.73 E-value=4.1e+02 Score=23.52 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEG 127 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 127 (208)
-.-++..+-+++++.+-||++.--+..... +...+..++.+++++....|
T Consensus 160 ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g 209 (460)
T COG0076 160 IVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG 209 (460)
T ss_pred EEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCc
Confidence 344566788999999999987444444433 44556666677766666666
No 452
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.73 E-value=1.5e+02 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=26.5
Q ss_pred CcCcccccccccccCCCCC--CCHHHHHHHHHH----HHHCCCCeEeCCC
Q 040616 2 EVSGQGLRCMGMFAFYGPP--KPESCMIALIHH----AIDSGITVLDTSN 45 (208)
Q Consensus 2 ~v~~lg~G~~~~~~~~~~~--~~~~~~~~~l~~----A~~~Gi~~~DtA~ 45 (208)
.+|.+||.+-+-. .+|+. ...+++.++++. |.+.|||.|--|.
T Consensus 69 ~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 69 RIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred CccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 5777888776531 13332 234455555555 5568999998876
No 453
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=20.70 E-value=1.4e+02 Score=22.89 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=35.5
Q ss_pred cCCcceE-----eeCcccHHHHHHHhhcCC-c-cEEeeccCcCCCCccccHHHHHHHhCCcEEEcccC
Q 040616 126 EGKIKHI-----DLSEASASTIRRAHTIHP-I-TVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLL 186 (208)
Q Consensus 126 ~G~ir~i-----Gvs~~~~~~l~~~~~~~~-~-~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 186 (208)
.|+.++. |.|.|.+..+..+++..| + ++.-+.| .+++++.|++.|..+..+.+-
T Consensus 58 ~g~~~a~g~pefGaS~H~Ar~lL~~~~~~p~iraa~NIrY-------~~~~v~~~~~~G~~v~~~dR~ 118 (181)
T COG1992 58 GGRPYAVGPPEFGASSHTARVLLTVMKHDPDIRAAINIRY-------SEEVVEALKDLGLAVSSFDRS 118 (181)
T ss_pred CCEEeecCCCCCCchHHHHHHHHHHHhhCCCceEEeeecc-------cHHHHHHHHhcCceEEEeCcc
Confidence 4555555 466666666777776644 2 2333333 368999999999999887773
No 454
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=20.66 E-value=1.5e+02 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCC--CcccEEEeecCC
Q 040616 81 AYLRAACEASLKCLDV--DCIDLYYQHRID 108 (208)
Q Consensus 81 ~~i~~~~~~sL~~L~~--d~iDl~~lh~~~ 108 (208)
..+.+.+++.|+..++ +-||.|+.|.++
T Consensus 223 ~~~~~~~~~~L~~~~l~~~dId~~vpHQan 252 (323)
T COG0332 223 RAMPKAIEEVLEKAGLTPEDIDWFVPHQAN 252 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEcccccc
Confidence 3356788888888774 679999999874
No 455
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=20.64 E-value=1.9e+02 Score=23.65 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=37.3
Q ss_pred ceEeeCcc-cH--HHHHHHhhcCCccEEeeccCcCCCCccccHHHHHHHhCCcEEEccc
Q 040616 130 KHIDLSEA-SA--STIRRAHTIHPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSL 185 (208)
Q Consensus 130 r~iGvs~~-~~--~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~p 185 (208)
..|++|-| .+ ..+.+.+....-.|.-...||+.. ++++..+..+.||.|.||.-
T Consensus 44 ~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplST--QDdvaAAL~~~Gi~V~A~~g 100 (268)
T PF05221_consen 44 ARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLST--QDDVAAALAEEGIPVFAWKG 100 (268)
T ss_dssp EEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT----HHHHHHHHHTTEEEEE-TT
T ss_pred CEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCccc--chHHHHHhccCCceEEEeCC
Confidence 36777765 22 235555555666788889999999 78999999999999999853
No 456
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.62 E-value=2.7e+02 Score=22.29 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCcceEee-CcccHHHHHHHhhc----CCccEEeeccCcCCCCccccHHHHHHHh
Q 040616 113 IEVTIGELKRLVEEGKIKHIDL-SEASASTIRRAHTI----HPITVVRLEWSLRSRDVEEEIVPTCREL 176 (208)
Q Consensus 113 ~~~~~~~l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~~l~~~~~~ 176 (208)
.+...+.++.++++| -.+|+ |||+ .+++.+... ..+|.+-..|-.-...++..++.+|-++
T Consensus 115 ~~~~~~~lq~lR~~g--~~l~iisN~d-~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKG--TILGIISNFD-DRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred ccHHHHHHHHHHhCC--eEEEEecCCc-HHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 344559999999999 45665 6666 444443332 2234333333333344455666655444
No 457
>PLN02907 glutamate-tRNA ligase
Probab=20.56 E-value=4e+02 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHh
Q 040616 76 YCGDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAH 146 (208)
Q Consensus 76 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 146 (208)
+........+++.+.|+-||.++ |-.. + ....++...+..++|.++|+.- +|..+.+++++..
T Consensus 257 p~r~~~e~~~~I~~dl~wLG~~~-d~~~-~---qS~r~~~y~~~a~~Li~~G~aY---~~~~~~~~~~~~~ 319 (722)
T PLN02907 257 PSKESDEFVENILKDIETLGIKY-DAVT-Y---TSDYFPQLMEMAEKLIKEGKAY---VDDTPREQMRKER 319 (722)
T ss_pred CCcCChHHHHHHHHHHHHcCCCC-CCcc-c---ccccHHHHHHHHHHHHHcCCee---ecCCCHHHHHHHH
Confidence 34556677889999999999986 5321 1 1234667789999999999975 4777778777764
No 458
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.54 E-value=5.9e+02 Score=22.35 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHH-HHHHHHcCCcceEeeCc---------ccHHHHHHHhhc
Q 040616 79 DPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGE-LKRLVEEGKIKHIDLSE---------ASASTIRRAHTI 148 (208)
Q Consensus 79 ~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 148 (208)
+.+.+.+.++..-+..+ +.-++|-.-|+-..-.+.++. ++.+.+---|+.|.+.+ .+.+ +.+.++.
T Consensus 139 s~eei~~~i~yI~~~p~---I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~e-ll~~Lk~ 214 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQ---IRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDE-LVAILKK 214 (417)
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHH-HHHHHHh
Confidence 44555555554444323 333445444444333444554 46666654455444432 3333 3333444
Q ss_pred CCccEEeeccCcCCCC--ccccHHHHHHHhCCcEEEcccCcccc
Q 040616 149 HPITVVRLEWSLRSRD--VEEEIVPTCRELGIGIVAYSLLGRGF 190 (208)
Q Consensus 149 ~~~~~~q~~~~~~~~~--~~~~~l~~~~~~gi~v~a~~pl~~G~ 190 (208)
..+.++++.+|-..-- ....-++.+++.||.+...++|-.|.
T Consensus 215 ~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV 258 (417)
T TIGR03820 215 HHPVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAGV 258 (417)
T ss_pred cCCeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECCc
Confidence 4567888888754211 11256777788899999999999983
No 459
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=20.32 E-value=4.6e+02 Score=23.45 Aligned_cols=111 Identities=9% Similarity=0.105 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeecC---CCCCCH----HHHHHHHHHHHH-cCCcc--eEeeCcccHHHHHHHh
Q 040616 77 CGDPAYLRAACEASLKCLDVDCIDLYYQHRI---DTKIPI----EVTIGELKRLVE-EGKIK--HIDLSEASASTIRRAH 146 (208)
Q Consensus 77 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~---~~~~~~----~~~~~~l~~l~~-~G~ir--~iGvs~~~~~~l~~~~ 146 (208)
..+++...+.+.+.. .=| +|++==.-+ .+-.++ ..+++++++..+ .|+-+ ++-++.-+.+++.+-.
T Consensus 179 GLsp~~~A~~~y~~~-~GG---vD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra 254 (475)
T CHL00040 179 GLSAKNYGRAVYECL-RGG---LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRA 254 (475)
T ss_pred CCCHHHHHHHHHHHH-cCC---CcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHH
Confidence 477888887776665 223 343311100 011233 446777777664 45533 4444422344443332
Q ss_pred hc---CCccEEeeccCcCCCCccccHHHHHHHhCCcEEEcccCcccccC
Q 040616 147 TI---HPITVVRLEWSLRSRDVEEEIVPTCRELGIGIVAYSLLGRGFLS 192 (208)
Q Consensus 147 ~~---~~~~~~q~~~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~l~ 192 (208)
+. ....++++.++..-...-..+.++|+..++.++++..+.+ .++
T Consensus 255 ~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~g-a~~ 302 (475)
T CHL00040 255 VFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHA-VID 302 (475)
T ss_pred HHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEecccccc-ccc
Confidence 22 3446778888776554455777788889999999988875 344
No 460
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.29 E-value=5.3e+02 Score=21.70 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCcceEeeCc-ccHHHHHHHhhcCCccEEee
Q 040616 117 IGELKRLVEEGKIKHIDLSE-ASASTIRRAHTIHPITVVRL 156 (208)
Q Consensus 117 ~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 156 (208)
|+.....++.=.+--+++.+ .+++.++++++....|.+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 55555566554555666665 47788888888777776665
No 461
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.25 E-value=2.9e+02 Score=19.19 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEee
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTKIPIEVTIGELKRLVEEGKIKHIDL 134 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 134 (208)
.+.+.+...+++..++- +...++ =.+|.+.++..+.+.|+.+++.|.-+ +++
T Consensus 67 v~~~~L~~~l~~~~~~~--~~~~v~--I~aD~~~~~~~vv~v~d~~~~aG~~~-v~l 118 (122)
T TIGR02803 67 VARETLGTALDALTEGD--KDTTIF--FRADKTVDYGDLMKVMNLLRQAGYLK-IGL 118 (122)
T ss_pred CCHHHHHHHHHHHHhcC--CCceEE--EEcCCCCCHHHHHHHHHHHHHcCCCE-EEE
Confidence 45556666665544422 222333 33577788999999999999998753 544
No 462
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.15 E-value=4.7e+02 Score=21.06 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEeeCcccHHHHHHHhhc
Q 040616 78 GDPAYLRAACEASLKCLDVDCIDLYYQHRIDTK-IPIEVTIGELKRLVEEGKIKHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 78 ~~~~~i~~~~~~sL~~L~~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 148 (208)
.+.+.+.+-+++..+..+ +.+++-|.|... .++ ..+.+++|.+...|..|=-|..+...+.++.+.
T Consensus 109 ~~~~~l~~~~~~ia~~~~---~pi~lYn~P~~~g~~l--s~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~~ 175 (284)
T cd00950 109 PSQEGLYAHFKAIAEATD---LPVILYNVPGRTGVNI--EPETVLRLAEHPNIVGIKEATGDLDRVSELIAL 175 (284)
T ss_pred CCHHHHHHHHHHHHhcCC---CCEEEEEChhHhCCCC--CHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHh
Confidence 467888888888888743 677877877422 111 134455555557776666677677777766554
No 463
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.13 E-value=3.8e+02 Score=22.69 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCC--cce---EeeCcccHHHHHHHh
Q 040616 112 PIEVTIGELKRLVEEGK--IKH---IDLSEASASTIRRAH 146 (208)
Q Consensus 112 ~~~~~~~~l~~l~~~G~--ir~---iGvs~~~~~~l~~~~ 146 (208)
..++++++++.+++.|. +.. +|+-+-+.+.+.+.+
T Consensus 134 ~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l 173 (377)
T PRK08599 134 NEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESL 173 (377)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHH
Confidence 45566777777777663 211 244444555444433
No 464
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=20.10 E-value=1.5e+02 Score=24.12 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCCcccEEEee
Q 040616 85 AACEASLKCLDVDCIDLYYQH 105 (208)
Q Consensus 85 ~~~~~sL~~L~~d~iDl~~lh 105 (208)
..+.+.|+++| .+++.+.
T Consensus 21 ~~i~~al~~~g---~~v~~i~ 38 (315)
T TIGR01205 21 AAVLKALRDLG---YDVYPVD 38 (315)
T ss_pred HHHHHHHhhcC---CEEEEEe
Confidence 44555666665 4444444
No 465
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.08 E-value=5.4e+02 Score=21.72 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce--EEEEeecceecCCCCccCCCC-hHHHHHHHHHHHHHcCCCc
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR--VKLTTKFGIRYEDGKYSYCGD-PAYLRAACEASLKCLDVDC 98 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~--~~i~tK~~~~~~~~~~~~~~~-~~~i~~~~~~sL~~L~~d~ 98 (208)
+.++...+++.|.+.|++=|=- -| -|+.+-+ ..|+-.+.... -..-..+ -.....-...-|+.-|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRl---TG---GEPllR~dl~eIi~~l~~~~---~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRL---TG---GEPLLRKDLDEIIARLARLG---IRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEE---eC---CCchhhcCHHHHHHHHhhcc---cceEEEecchhhHHHHHHHHHHcCCcE
Confidence 6788999999999999997642 23 3555544 11111111000 0000011 1123455666777788776
Q ss_pred ccEEEeecCCCC--------CCHHHHHHHHHHHHHcCCc----ceEeeCcccHHHHHHHhhc
Q 040616 99 IDLYYQHRIDTK--------IPIEVTIGELKRLVEEGKI----KHIDLSEASASTIRRAHTI 148 (208)
Q Consensus 99 iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~~ 148 (208)
|.+ .||..+++ ..+.++++.+++.++.|.- ..+=+-+.+..++..+++.
T Consensus 115 VNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 115 VNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred EEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 654 34554432 2367788899988888863 4455555666665555554
No 466
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=20.05 E-value=2e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHCCCCeEeCCCCCCCCchhhhcce
Q 040616 22 PESCMIALIHHAIDSGITVLDTSNVYGPHTNEILLAR 58 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~~e~~~g~ 58 (208)
+++...+.++...+.|++.+|+=..|--..-++.+|.
T Consensus 11 ~~~~l~~A~~~~r~~G~~~~d~ytPfPvhgld~alg~ 47 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGYRIWDVYTPFPVHGLDEALGL 47 (173)
T ss_pred CHHHHHHHHHHHHHcCCceeEEeCCCcCcCHHHHhCC
Confidence 5677889999999999999998777754446677775
No 467
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=20.03 E-value=1.4e+02 Score=19.69 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHCCCCeE
Q 040616 22 PESCMIALIHHAIDSGITVL 41 (208)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~ 41 (208)
|.+.+.+..+.++++||+-+
T Consensus 71 P~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEE
Confidence 67889999999999999865
Done!