BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040617
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 111/161 (68%), Gaps = 6/161 (3%)
Query: 2 APVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRD 61
A + LPPGFRFHPTD+ELV +YL RK GQ + + II EVDLYK +PW+L E++ +R
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR- 69
Query: 62 PEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTYQSRAIGMKKTLVYYRGRAPQG 121
EWYFF PRDRKYPNG R NRA GYWK+TG D+ V + R +G+KK LV+Y G+AP+G
Sbjct: 70 -EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 122 IRTDWVMHEYRLDDKECDDISAGIQ----DSYALCRVFKKN 158
++TDW+MHEYRL D A D + LCR++ K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 1 MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSR 60
+ + LPPGFRF+PTDEEL+ YL RK G + L +I E+DLYK +PW L K+ +
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71
Query: 61 DPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTYQSRAIGMKKTLVYYRGRAPQ 120
EWYFF PRDRKYPNG R NR +GYWK+TG D+ ++ + + +G+KK LV+Y G+AP+
Sbjct: 72 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 121 GIRTDWVMHEYRLDDKECDDISAGIQDSYALCRVFKKN 158
G +T+W+MHEYRL + + S + D + LCR++KK
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNGSTKL-DDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 1 MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSR 60
+ + LPPGFRF+PTDEEL+ YL RK G + L +I E+DLYK +PW L K+ +
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 74
Query: 61 DPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTYQSRAIGMKKTLVYYRGRAPQ 120
EWYFF PRDRKYPNG R NR +GYWK+TG D+ ++ + + +G+KK LV+Y G+AP+
Sbjct: 75 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 121 GIRTDWVMHEYRLDDKECDDISAGIQDSYALCRVFKKN 158
G +T+W+MHEYRL + + S + D + LCR++KK
Sbjct: 133 GTKTNWIMHEYRLIEPSRRNGSTKL-DDWVLCRIYKKQ 169
>pdb|4GTU|A Chain A, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|B Chain B, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|C Chain C, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|D Chain D, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|E Chain E, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|F Chain F, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|G Chain G, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
pdb|4GTU|H Chain H, Ligand-Free Homodimeric Human Glutathione S-Transferase
M4-4
Length = 217
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 30/171 (17%)
Query: 87 GYWKSTGKDRRV----TYQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLD------DK 136
GYW G + Y + KK Y G AP R+ W+ +++L
Sbjct: 5 GYWDIRGLAHAIRLLLEYTDSSYEEKK---YTMGDAPDYDRSQWLNEKFKLGLDFPNLPY 61
Query: 137 ECDDISAGIQDSYALCRVFKKNGICSEMEDQHGQCSGLSSSLMENSQQSHGI--SIECET 194
D Q + LC + +K+ +C E E++ + L + M+ S Q + S + E
Sbjct: 62 LIDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQAMDVSNQLARVCYSPDFEK 121
Query: 195 MSPDVPINSSSCIDEEDKDDSWMQFITDDPWCSSNSTSTTFTGDQVSHLEF 245
+ P+ + + + QF+ PW F GD+++ ++F
Sbjct: 122 LKPEYLEELPTMMQH------FSQFLGKRPW---------FVGDKITFVDF 157
>pdb|1GTU|A Chain A, Ligand-Free Human Glutathione S-Transferase M1a-1a
pdb|1GTU|B Chain B, Ligand-Free Human Glutathione S-Transferase M1a-1a
pdb|1GTU|C Chain C, Ligand-Free Human Glutathione S-Transferase M1a-1a
pdb|1GTU|D Chain D, Ligand-Free Human Glutathione S-Transferase M1a-1a
Length = 217
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 87 GYWKSTGKDRRV----TYQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLD------DK 136
GYW G + Y + KK Y G AP R+ W+ +++L
Sbjct: 5 GYWDIRGLAHAIRLLLEYTDSSYEEKK---YTMGDAPDYDRSQWLNEKFKLGLDFPNLPY 61
Query: 137 ECDDISAGIQDSYALCRVFKKNGICSEMEDQHGQCSGLSSSLMENSQQSHGISI--ECET 194
D Q + LC + +K+ +C E E++ + L + M+N Q I E E
Sbjct: 62 LIDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQTMDNHMQLGMICYNPEFEK 121
Query: 195 MSPDVPINSSSCIDEEDKDDSWMQFITDDPWCSSNSTS 232
+ P + +K + +F+ PW + N +
Sbjct: 122 LKP------KYLEELPEKLKLYSEFLGKRPWFAGNKIT 153
>pdb|1YJ6|A Chain A, Crystal Structure Of Human Glutathione S-Transferase
M1a-1a Complexed With Glutathionyl-Zinc-Trihydroxide
pdb|1YJ6|B Chain B, Crystal Structure Of Human Glutathione S-Transferase
M1a-1a Complexed With Glutathionyl-Zinc-Trihydroxide
pdb|1YJ6|C Chain C, Crystal Structure Of Human Glutathione S-Transferase
M1a-1a Complexed With Glutathionyl-Zinc-Trihydroxide
pdb|1XW6|A Chain A, 1.9 Angstrom Resolution Structure Of Human Glutathione S-
Transferase M1a-1a Complexed With Glutathione
pdb|1XW6|B Chain B, 1.9 Angstrom Resolution Structure Of Human Glutathione S-
Transferase M1a-1a Complexed With Glutathione
pdb|1XW6|C Chain C, 1.9 Angstrom Resolution Structure Of Human Glutathione S-
Transferase M1a-1a Complexed With Glutathione
pdb|1XW6|D Chain D, 1.9 Angstrom Resolution Structure Of Human Glutathione S-
Transferase M1a-1a Complexed With Glutathione
pdb|1XWK|A Chain A, 2.3 Angstrom Resolution Crystal Structure Of Human
Glutathione S-Transferase M1a-1a Complexed With
Glutathionyl-S-Dinitrobenzene
pdb|1XWK|B Chain B, 2.3 Angstrom Resolution Crystal Structure Of Human
Glutathione S-Transferase M1a-1a Complexed With
Glutathionyl-S-Dinitrobenzene
pdb|1XWK|C Chain C, 2.3 Angstrom Resolution Crystal Structure Of Human
Glutathione S-Transferase M1a-1a Complexed With
Glutathionyl-S-Dinitrobenzene
pdb|2F3M|A Chain A, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|2F3M|B Chain B, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|2F3M|C Chain C, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|2F3M|D Chain D, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|2F3M|E Chain E, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|2F3M|F Chain F, Structure Of Human Glutathione S-Transferase M1a-1a
Complexed With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
Length = 218
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 87 GYWKSTGKDRRV----TYQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLD------DK 136
GYW G + Y + KK Y G AP R+ W+ +++L
Sbjct: 6 GYWDIRGLAHAIRLLLEYTDSSYEEKK---YTMGDAPDYDRSQWLNEKFKLGLDFPNLPY 62
Query: 137 ECDDISAGIQDSYALCRVFKKNGICSEMEDQHGQCSGLSSSLMENSQQSHGISI--ECET 194
D Q + LC + +K+ +C E E++ + L + M+N Q I E E
Sbjct: 63 LIDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQTMDNHMQLGMICYNPEFEK 122
Query: 195 MSPDVPINSSSCIDEEDKDDSWMQFITDDPWCSSNSTS 232
+ P + +K + +F+ PW + N +
Sbjct: 123 LKP------KYLEELPEKLKLYSEFLGKRPWFAGNKIT 154
>pdb|1MTC|A Chain A, Glutathione Transferase Mutant Y115f
pdb|1MTC|B Chain B, Glutathione Transferase Mutant Y115f
Length = 217
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--FNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|6GSX|A Chain A, First-sphere And Second-sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSX|B Chain B, First-sphere And Second-sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSY|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSY|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--YNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|1GSB|A Chain A, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSB|B Chain B, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSB|C Chain C, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSB|D Chain D, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSC|A Chain A, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSC|B Chain B, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSC|C Chain C, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|1GSC|D Chain D, New Crystal Forms Of A Mu Class Glutathione S-Transferase
From Rat Liver
pdb|2GST|A Chain A, Structure Of The Xenobiotic Substrate Binding Site Of A
Glutathione S- Transferase As Revealed By X-Ray
Crystallographic Analysis Of Product Complexes With The
Diastereomers Of 9-(S-Glutathionyl)-10-Hydroxy-9,
10-Dihydrophenanthrene
pdb|2GST|B Chain B, Structure Of The Xenobiotic Substrate Binding Site Of A
Glutathione S- Transferase As Revealed By X-Ray
Crystallographic Analysis Of Product Complexes With The
Diastereomers Of 9-(S-Glutathionyl)-10-Hydroxy-9,
10-Dihydrophenanthrene
pdb|3GST|A Chain A, Structure Of The Xenobiotic Substrate Binding Site Of A
Glutathione S-Transferase As Revealed By X-Ray
Crystallographic Analysis Of Product Complexes With The
Diastereomers Of 9-(S-Glutathionyl)-10-Hydroxy-9, 10-
Dihydrophenanthrene
pdb|3GST|B Chain B, Structure Of The Xenobiotic Substrate Binding Site Of A
Glutathione S-Transferase As Revealed By X-Ray
Crystallographic Analysis Of Product Complexes With The
Diastereomers Of 9-(S-Glutathionyl)-10-Hydroxy-9, 10-
Dihydrophenanthrene
pdb|4GST|A Chain A, Reaction Coordinate Motion In An Snar Reaction Catalyzed
By Glutathione Transferase
pdb|4GST|B Chain B, Reaction Coordinate Motion In An Snar Reaction Catalyzed
By Glutathione Transferase
pdb|5GST|A Chain A, Reaction Coordinate Motion In An Snar Reaction Catalyzed
By Glutathione Transferase
pdb|5GST|B Chain B, Reaction Coordinate Motion In An Snar Reaction Catalyzed
By Glutathione Transferase
pdb|6GST|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GST|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--YNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|6GSU|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSU|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--YNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|6GSV|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSV|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--YNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|6GSW|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSW|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 113 YYRGRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMED 166
Y G AP R+ W+ +++L + D S I S A+ R +K+ +C E E+
Sbjct: 32 YAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEE 91
Query: 167 QHGQCSGLSSSLMENSQQSHGISIECETMSPDVPINSSSCIDE-EDKDDSWMQFITDDPW 225
+ + + + +M+N Q + + C +PD + +K + +F+ PW
Sbjct: 92 ERIRADIVENQVMDNRMQ---LIMLC--YNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPW 146
Query: 226 CSSNSTSTTFTGDQVSHLEF 245
F GD+V++++F
Sbjct: 147 ---------FAGDKVTYVDF 157
>pdb|3FYG|A Chain A, Crystal Structure Of Tetradeca-(3-Fluorotyrosyl)-
Glutathione S-Transferase
pdb|3FYG|B Chain B, Crystal Structure Of Tetradeca-(3-Fluorotyrosyl)-
Glutathione S-Transferase
Length = 217
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 116 GRAPQGIRTDWVMHEYRL-----DDKECDDISAGIQDSYALCRVF-KKNGICSEMEDQHG 169
G AP R+ W+ +++L + D S I S A+ R +K+ +C E E++
Sbjct: 35 GDAPDXDRSQWLNEKFKLGLDFPNLPXLIDGSRKITQSNAIMRXLARKHHLCGETEEERI 94
Query: 170 QCSGLSSSLMENSQQSHGI--SIECETMSPDVPINSSSCIDEEDKDDSWMQFITDDPWCS 227
+ + + +M+N Q + + + E P+ I E+ K S +F+ PW
Sbjct: 95 RADIVENQVMDNRMQLIMLCYNPDFEKQKPEF----LKTIPEKMKLXS--EFLGKRPW-- 146
Query: 228 SNSTSTTFTGDQVSHLEF 245
F GD+V+ ++F
Sbjct: 147 -------FAGDKVTXVDF 157
>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
Length = 359
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 197 PDVPI-------NSSSCIDEEDKDDSWMQFITDDPWCSSNSTSTTF 235
PDVP+ ++ S IDE+ K W FI P C++ +
Sbjct: 117 PDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPL 162
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 36 DIIPEVDLYKCEPWELAEKSFLPSR 60
D P ++LYK E WE+A++ +P R
Sbjct: 149 DYAPIINLYKTEVWEIAKRIGVPER 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,269,656
Number of Sequences: 62578
Number of extensions: 349159
Number of successful extensions: 722
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 20
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)