Query 040617
Match_columns 247
No_of_seqs 162 out of 982
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.2E-57 4E-62 384.0 15.5 156 2-159 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.3E-57 4.5E-62 383.1 14.5 156 2-160 13-168 (171)
3 2c4b_A Barnase mcoeeti fusion; 32.2 42 0.0014 26.6 3.8 65 15-91 4-72 (143)
4 1ldd_A APC2WHB, anaphase promo 24.8 34 0.0012 24.0 1.8 26 7-33 37-63 (74)
5 2oh5_A Polyhedrin, C-polyhedri 20.6 66 0.0023 26.3 3.0 28 86-113 140-168 (248)
6 1cmb_A Met APO-repressor; DNA- 17.8 1.2E+02 0.004 22.2 3.5 38 13-54 50-87 (104)
7 3g21_A GAG polyprotein, capsid 15.5 64 0.0022 22.9 1.5 13 14-26 64-76 (77)
8 1f6k_A N-acetylneuraminate lya 14.1 68 0.0023 27.7 1.7 19 6-25 106-124 (293)
9 3dz1_A Dihydrodipicolinate syn 13.9 73 0.0025 27.8 1.9 18 6-25 109-126 (313)
10 2ehh_A DHDPS, dihydrodipicolin 13.8 70 0.0024 27.6 1.7 19 6-25 102-120 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.2e-57 Score=384.00 Aligned_cols=156 Identities=54% Similarity=1.076 Sum_probs=134.9
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHhhHcCCCCCcCceeecCCCCCCcccchhhcCCCCCCCceEEeccccccCCCCCccc
Q 040617 2 APVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTN 81 (247)
Q Consensus 2 ~p~~LPpGfrF~PTDeELI~~YL~~Ki~g~~l~~~~I~evDvy~~~PwdL~~~~~~~~~d~~wYFFt~r~~k~~~g~R~~ 81 (247)
+++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+||||+++++++++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 56789999999999999999999999999999999999999999999999998543 4679999999999999999999
Q ss_pred cccccceeeecCCceeEeecCceeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCcc----ccCCCCceEEEEEEee
Q 040617 82 RATRAGYWKSTGKDRRVTYQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECDDI----SAGIQDSYALCRVFKK 157 (247)
Q Consensus 82 R~t~gG~Wk~~G~~~~I~~~g~~iG~Krtl~Fy~g~~~~g~rT~WvM~EY~l~~~~~~~~----~~~~~~~~VLCrIykk 157 (247)
|+|++||||++|++++|.++|.+||+||+|+||.|+++++.+|+|+||||+|........ .....++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 999999999999999999989999999999999999999999999999999998754321 1023579999999998
Q ss_pred CC
Q 040617 158 NG 159 (247)
Q Consensus 158 ~~ 159 (247)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.3e-57 Score=383.08 Aligned_cols=156 Identities=49% Similarity=1.004 Sum_probs=131.8
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHhhHcCCCCCcCceeecCCCCCCcccchhhcCCCCCCCceEEeccccccCCCCCccc
Q 040617 2 APVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTN 81 (247)
Q Consensus 2 ~p~~LPpGfrF~PTDeELI~~YL~~Ki~g~~l~~~~I~evDvy~~~PwdL~~~~~~~~~d~~wYFFt~r~~k~~~g~R~~ 81 (247)
+.+.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+||||+++++++++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 5678999999999999999999999999999999999999999999999999853 35789999999999999999999
Q ss_pred cccccceeeecCCceeEeecCceeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCccccCCCCceEEEEEEeeCCC
Q 040617 82 RATRAGYWKSTGKDRRVTYQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECDDISAGIQDSYALCRVFKKNGI 160 (247)
Q Consensus 82 R~t~gG~Wk~~G~~~~I~~~g~~iG~Krtl~Fy~g~~~~g~rT~WvM~EY~l~~~~~~~~~~~~~~~~VLCrIykk~~~ 160 (247)
|+|++||||++|++++|..++.+||+||+|+||.++++++.+|+|+||||+|........ ....++|||||||+|+..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~-~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNG-STKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------CCEEEEEEEECC--
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccC-cccCCCEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999998652211 134689999999999863
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=32.19 E-value=42 Score=26.59 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHhhHcCCCCCcCcee--ecCCCCCCccc--chhhcCCCCCCCceEEeccccccCCCCCccccccccceee
Q 040617 15 TDEELVNYYLKRKINGQEIELDIIP--EVDLYKCEPWE--LAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWK 90 (247)
Q Consensus 15 TDeELI~~YL~~Ki~g~~l~~~~I~--evDvy~~~Pwd--L~~~~~~~~~d~~wYFFt~r~~k~~~g~R~~R~t~gG~Wk 90 (247)
|+.+-|..||.. ...||..+|. +++--+.+|-+ |.........++.. |.-+.+.-|.. .+|+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v--F~NrE~~LP~~-------~~~~y~ 71 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI--FSNREGKLPGK-------SGRTWR 71 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE--ECCTTCCSCCC-------TTCCEE
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce--EecCCCcCCCC-------CCCEEE
Confidence 455666678877 3456767775 46667888854 65543332223332 55444443331 467885
Q ss_pred e
Q 040617 91 S 91 (247)
Q Consensus 91 ~ 91 (247)
.
T Consensus 72 E 72 (143)
T 2c4b_A 72 E 72 (143)
T ss_dssp E
T ss_pred E
Confidence 3
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=24.80 E-value=34 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCCceeCC-ChHHHHHHHHHhhHcCCCC
Q 040617 7 PPGFRFHP-TDEELVNYYLKRKINGQEI 33 (247)
Q Consensus 7 PpGfrF~P-TDeELI~~YL~~Ki~g~~l 33 (247)
|.|+.|.. |++||-. ||..++....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 66889998 8899888 79999987654
No 5
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=20.65 E-value=66 Score=26.25 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=22.9
Q ss_pred cceeeecC-CceeEeecCceeeEEEEEEe
Q 040617 86 AGYWKSTG-KDRRVTYQSRAIGMKKTLVY 113 (247)
Q Consensus 86 gG~Wk~~G-~~~~I~~~g~~iG~Krtl~F 113 (247)
.--|.++| +-|+|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 44699999 56788889999999988755
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.84 E-value=1.2e+02 Score=22.19 Aligned_cols=38 Identities=32% Similarity=0.352 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHhhHcCCCCCcCceeecCCCCCCcccchhh
Q 040617 13 HPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEK 54 (247)
Q Consensus 13 ~PTDeELI~~YL~~Ki~g~~l~~~~I~evDvy~~~PwdL~~~ 54 (247)
|-|-.||+..-...-..|+|+|.+ .|+-+..|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHH
Confidence 567888888777777899999864 58888888888865
No 7
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=15.48 E-value=64 Score=22.87 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.8
Q ss_pred CChHHHHHHHHHh
Q 040617 14 PTDEELVNYYLKR 26 (247)
Q Consensus 14 PTDeELI~~YL~~ 26 (247)
|+.+|||.|.|.+
T Consensus 64 ~~~~e~ik~~~~~ 76 (77)
T 3g21_A 64 TTPGEIIKYVLDR 76 (77)
T ss_dssp CSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcc
Confidence 7889999987764
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=14.05 E-value=68 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=14.5
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 040617 6 LPPGFRFHPTDEELVNYYLK 25 (247)
Q Consensus 6 LPpGfrF~PTDeELI~~YL~ 25 (247)
+||- .|.||+++|+.||-.
T Consensus 106 ~~P~-y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYDT 124 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHHH
Confidence 4554 488999999998754
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=13.91 E-value=73 Score=27.82 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.6
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 040617 6 LPPGFRFHPTDEELVNYYLK 25 (247)
Q Consensus 6 LPpGfrF~PTDeELI~~YL~ 25 (247)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5663 55999999998654
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=13.76 E-value=70 Score=27.61 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=14.5
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 040617 6 LPPGFRFHPTDEELVNYYLK 25 (247)
Q Consensus 6 LPpGfrF~PTDeELI~~YL~ 25 (247)
+|| |.|.||+++|+.||-.
T Consensus 102 ~~P-~y~~~s~~~l~~~f~~ 120 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFKT 120 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 455 4478999999998743
Done!