BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040620
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 12 EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCT 71
E F+AQA ++ Y ++ S+SLK +I++ IP+II+N G+P+TL+ ++ L + K
Sbjct: 12 EIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNV 71
Query: 72 QILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADATFTT 131
Q L+ LAH+GFF + + E EEE+ L + + +L + ++ + D T +T
Sbjct: 72 QRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVK-GTELCLAPMVECVLDPTLST 130
Query: 132 SFHFLSTWLQNDDQTLFGTADG---------------IFYEAMITDFELIASVLIEDCNE 176
SFH L W+ +D TLF G ++ +A+ +D ++I ++ ++DCN
Sbjct: 131 SFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMI-NLAMKDCNL 189
Query: 177 VSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
V +GL+ +VDVGG GT + I FP C VF
Sbjct: 190 VFEGLESIVDVGGGNGTTGKIICETFPKLTCVVF 223
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 24/220 (10%)
Query: 8 NGAR--EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHP 65
NG + E F+AQA ++ + Y ++ S+SLK A+++ IP+II N G+P++L+ ++ L V
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 66 NKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIA 125
+K + L+ LAH+GFF +EEES L + R S L + ++ +
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEIIT-----KEEESYALTVASELLVRGS-DLCLAPMVECVL 119
Query: 126 DATFTTSFHFLSTWLQNDDQTLFGTADG---------------IFYEAMITDFELIASVL 170
D T + S+H L W+ +D TLFG G F +AM +D +LI ++
Sbjct: 120 DPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI-NLA 178
Query: 171 IEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
+ DC+ V GL+ +VDVGG TGT A+ I FP KC VF
Sbjct: 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVF 218
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 24/220 (10%)
Query: 8 NGAR--EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHP 65
NG + E F+AQA ++ + Y ++ S SLK A++ IP+II N G+P++L+ ++ L V
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 66 NKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIA 125
+K + L LAH+GFF +EEES L + R S L + + +
Sbjct: 66 SKIGNVRRLXRYLAHNGFFEIIT-----KEEESYALTVASELLVRGS-DLCLAPXVECVL 119
Query: 126 DATFTTSFHFLSTWLQNDDQTLFGTADG---------------IFYEAMITDFELIASVL 170
D T + S+H L W+ +D TLFG G F +A +D +LI ++
Sbjct: 120 DPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLI-NLA 178
Query: 171 IEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
+ DC+ V GL+ +VDVGG TGT A+ I FP KC VF
Sbjct: 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVF 218
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)
Query: 12 EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCT 71
E + AQ ++ + YN++ S++LK A++L I D I+N G+PMTL+++ +L +HP+K
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 72 QILVCLLAHSGFF----VQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADA 127
+ LL H+GFF V+ K+G E+E L PP S++ + + + + ++ A
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP-----SKLLISGKPTCLSSIVKGA 116
Query: 128 TFTTSFHFLST---WLQND-DQTLFGTADG-----------------IFYEAMITDFELI 166
+S S+ W D +QTLF A G +F +AM +D +
Sbjct: 117 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 176
Query: 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
VL E+ V +GL+ LVDVGG TG + + I FP KCTVF
Sbjct: 177 KLVLQEN-KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF 219
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)
Query: 12 EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCT 71
E + AQ ++ + YN++ S++LK A++L I D I+N G+PMTL+++ +L +HP+K
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 72 QILVCLLAHSGFF----VQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADA 127
+ LL H+GFF V+ K+G E+E L PP S++ + + + + ++ A
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP-----SKLLISGKPTCLSSIVKGA 119
Query: 128 TFTTSFHFLST---WLQND-DQTLFGTADG-----------------IFYEAMITDFELI 166
+S S+ W D +QTLF A G +F +AM +D +
Sbjct: 120 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 179
Query: 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
VL E+ V +GL+ LVDVGG TG + + I FP KCTVF
Sbjct: 180 KLVLQEN-KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF 222
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)
Query: 12 EHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCT 71
E + AQ ++ + YN++ S++LK A++L I D I+N G+PMTL+++ +L +HP+K
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 72 QILVCLLAHSGFF----VQQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADA 127
+ LL H+GFF V+ K+G E+E L PP S++ + + + + ++ A
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP-----SKLLISGKPTCLSSIVKGA 120
Query: 128 TFTTSFHFLST---WLQND-DQTLFGTADG-----------------IFYEAMITDFELI 166
+S S+ W D +QTLF A G +F +AM +D +
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
VL E+ V +GL+ LVDVGG TG + + I FP KCTVF
Sbjct: 181 KLVLQEN-KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF 223
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 21/199 (10%)
Query: 31 LSLKRAIQLRIPDI-INNSGQPMTLTQIIVALNVHPNKTR---CTQILVCLLAHSGFFVQ 86
++LK AI+L + +I + G+ +T T++ L N +IL L +++
Sbjct: 35 MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94
Query: 87 QKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADATFTTSFHFLSTWLQNDDQT 146
++GK+ + S P F + + + + L+ D S+++L + D
Sbjct: 95 VEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL-DGGI 153
Query: 147 LFGTADG---------------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGST 191
F A G +F E M +I L+E + +GL LVDVGG
Sbjct: 154 PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF-EGLGTLVDVGGGV 212
Query: 192 GTMARAIATAFPDTKCTVF 210
G AIA +P K F
Sbjct: 213 GATVAAIAAHYPTIKGVNF 231
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Query: 33 LKRAIQLRIPDIINNSGQPMTLTQIIVALNV---HPNKT----RCTQILVCLLAHSGFFV 85
LK A++L + +II +G ++ I +A + +P+ R ++L C + +
Sbjct: 36 LKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 95
Query: 86 QQKDGKNEQEEESILLPPHL----DFFSRISLQLQGSTILLL-----IADATFTTSFHFL 136
Q+DGK ++ + +L D S +L L +L+ + DA F
Sbjct: 96 TQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFN 155
Query: 137 STWLQNDDQTLF---GTA---DGIFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGS 190
+ T F GT + +F + M +D I I + +GLK LVDVGG
Sbjct: 156 KAY----GMTAFEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGG 210
Query: 191 TGTMARAIATAFPDTKCTVF 210
TG + I + +P K F
Sbjct: 211 TGAVINTIVSKYPTIKGINF 230
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 31 LSLKRAIQLRIPDIINNSGQP---MTLTQIIVAL-NVHPN-KTRCTQILVCLLAHSGFFV 85
++LK AI+L + +I+ S P ++ +I L +P ++L L ++S
Sbjct: 36 MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95
Query: 86 QQKDGKNEQEEESILLPPHLDFFSRISLQLQGSTILLLIADATFTTSFHFLSTWLQNDDQ 145
++ + + E L P F ++ + + LLL D L W D
Sbjct: 96 TLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVL------LEPWFYLKDA 149
Query: 146 TL-----FGTADG---------------IFYEAMITDFELIASVLIEDCNEVSKGLKPLV 185
L F A G +F + M ++ + ++E N +GL +V
Sbjct: 150 ILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGF-EGLTTIV 208
Query: 186 DVGGSTGTMARAIATAFPDTKCTVF 210
DVGG TG +A I +P F
Sbjct: 209 DVGGGTGAVASMIVAKYPSINAINF 233
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
G+K ++DVGG G ++ A+ FP+ T+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTIL 220
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 147 LFGTADGIFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA 201
++G DG ITD ++I +VL+++C V +P G G M AI+ A
Sbjct: 49 VWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 99
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 147 LFGTADGIFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA 201
++G DG ITD ++I +VL+++C V +P G G M AI+ A
Sbjct: 51 VWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 101
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 147 LFGTADGIFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA 201
++G DG ITD ++I +VL+++C V +P G G M AI+ A
Sbjct: 50 VWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 100
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 107 FFSRISLQLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADGIFYEAMITDFELI 166
F S I ++ ST+ +++ D T T SFH S W+ +D +T G+ I TD
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 167 ASVLIEDCNEVSKGLKPL-----VDVGGSTGTMARAIATAFP 203
V E+ +K L + G + + R +A A P
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>pdb|3V9O|A Chain A, Crystal Structure Of Dihydroneopterin Aldolase (Bth_i0291)
From Burkholderia Thailendensis Bound To Guanine
Length = 143
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 9 GAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKT 68
GA EH + Q + L+L ++ ++ ++++ ++ Q + ++H +T
Sbjct: 37 GAFEHEKRGEQRVVINVDLFVPLALTTPVEDKLREVVDYDLMKQSVAQCVARGHIHLQET 96
Query: 69 RCTQILVCLLAHSG 82
C I LLAH
Sbjct: 97 LCDAIAASLLAHDA 110
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 184 LVDVGGSTGTMARAIATAFPDTKCTVF 210
+ D+GG G +A+ + +P K TVF
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVF 209
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 107 FFSRISLQLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADGIFYEAMITDFELI 166
F S I ++ ST+ +++ D T SF + W+ +D +T G+ I TD
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWI-DDVRTERGSDVIIMLVGNKTDLADK 136
Query: 167 ASVLIEDCNEVSKGLKPL-----VDVGGSTGTMARAIATAFPDTKCT 208
V IE+ +K L + G + + R +A A P + T
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 183
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 107 FFSRISLQLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADGIFYEAMITDFELI 166
F S I ++ ST+ +++ D T SF + W+ +D +T G+ I TD
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWI-DDVRTERGSDVIIMLVGNKTDLADK 126
Query: 167 ASVLIEDCNEVSKGLKPL-----VDVGGSTGTMARAIATAFPDTKCT 208
V IE+ +K L + G + + R +A A P + T
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 173
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVF 210
G VD+GG G++ A+ AFP + T+
Sbjct: 202 GAATAVDIGGGRGSLXAAVLDAFPGLRGTLL 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,043,667
Number of Sequences: 62578
Number of extensions: 216851
Number of successful extensions: 499
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 20
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)