Query 040620
Match_columns 214
No_of_seqs 106 out of 1133
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 6.9E-32 2.4E-36 235.6 13.5 186 14-214 6-213 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.1E-30 3.8E-35 228.9 16.7 196 9-213 13-234 (364)
3 3lst_A CALO1 methyltransferase 100.0 7.6E-30 2.6E-34 221.8 16.5 181 13-213 19-217 (348)
4 3reo_A (ISO)eugenol O-methyltr 100.0 3.4E-29 1.2E-33 219.6 15.1 199 9-213 14-236 (368)
5 1fp2_A Isoflavone O-methyltran 100.0 2.5E-29 8.4E-34 218.8 13.7 194 8-213 8-221 (352)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 2.8E-29 9.7E-34 218.8 13.3 200 9-213 3-226 (358)
7 3gwz_A MMCR; methyltransferase 100.0 7E-29 2.4E-33 217.5 15.4 182 13-213 35-235 (369)
8 2ip2_A Probable phenazine-spec 100.0 3.9E-28 1.3E-32 209.2 16.7 177 15-213 7-200 (334)
9 3i53_A O-methyltransferase; CO 100.0 9.2E-29 3.1E-33 213.3 9.9 177 18-213 7-202 (332)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 6.5E-28 2.2E-32 211.4 14.9 199 10-213 16-242 (372)
11 3dp7_A SAM-dependent methyltra 99.9 8.5E-28 2.9E-32 210.2 11.6 183 9-213 8-212 (363)
12 3mcz_A O-methyltransferase; ad 99.9 1.2E-26 4.3E-31 201.1 15.0 181 10-213 18-212 (352)
13 1x19_A CRTF-related protein; m 99.9 9.8E-27 3.4E-31 202.7 14.2 185 8-213 22-223 (359)
14 1qzz_A RDMB, aclacinomycin-10- 99.9 5.4E-26 1.8E-30 198.5 12.7 182 13-213 13-215 (374)
15 2r3s_A Uncharacterized protein 99.9 4.4E-26 1.5E-30 195.9 11.3 179 18-213 8-198 (335)
16 1tw3_A COMT, carminomycin 4-O- 99.9 2E-25 7E-30 194.0 14.5 179 16-213 19-216 (360)
17 2qm3_A Predicted methyltransfe 98.6 2.6E-08 9E-13 86.9 5.3 147 40-212 47-203 (373)
18 2heo_A Z-DNA binding protein 1 97.6 2E-05 6.9E-10 51.9 1.7 55 38-102 12-66 (67)
19 3mq2_A 16S rRNA methyltransfer 97.5 8.2E-05 2.8E-09 59.0 4.3 36 178-213 25-60 (218)
20 3e05_A Precorrin-6Y C5,15-meth 97.4 0.0002 6.8E-09 56.2 6.0 42 169-212 31-72 (204)
21 2fca_A TRNA (guanine-N(7)-)-me 97.4 0.00013 4.3E-09 58.3 4.7 33 180-212 38-70 (213)
22 3g07_A 7SK snRNA methylphospha 97.4 0.00014 4.9E-09 60.8 5.0 42 171-212 37-78 (292)
23 4dzr_A Protein-(glutamine-N5) 97.4 0.00018 6.3E-09 56.2 5.0 34 179-212 29-62 (215)
24 1y0u_A Arsenical resistance op 97.4 0.00033 1.1E-08 48.9 5.8 60 31-104 26-85 (96)
25 3dxy_A TRNA (guanine-N(7)-)-me 97.4 0.00016 5.6E-09 58.1 4.7 33 180-212 34-66 (218)
26 1yzh_A TRNA (guanine-N(7)-)-me 97.4 0.00018 6E-09 57.1 4.9 33 180-212 41-73 (214)
27 3dtn_A Putative methyltransfer 97.3 0.00055 1.9E-08 54.6 7.3 43 169-212 34-76 (234)
28 3jwh_A HEN1; methyltransferase 97.3 0.00021 7.3E-09 56.5 4.6 34 179-212 28-61 (217)
29 3mq0_A Transcriptional repress 97.3 0.00011 3.9E-09 61.3 3.1 62 31-104 27-88 (275)
30 2p35_A Trans-aconitate 2-methy 97.3 0.0003 1E-08 56.9 5.2 43 168-212 23-65 (259)
31 3jwg_A HEN1, methyltransferase 97.3 0.00024 8.2E-09 56.3 4.5 34 179-212 28-61 (219)
32 3ckk_A TRNA (guanine-N(7)-)-me 97.2 0.00014 4.9E-09 59.1 3.1 33 180-212 46-78 (235)
33 3bkx_A SAM-dependent methyltra 97.2 0.00045 1.5E-08 56.5 6.1 42 169-212 34-76 (275)
34 2vdv_E TRNA (guanine-N(7)-)-me 97.2 0.00028 9.5E-09 57.4 4.5 34 179-212 48-81 (246)
35 3hem_A Cyclopropane-fatty-acyl 97.2 0.00051 1.7E-08 57.3 5.8 42 168-212 62-103 (302)
36 3g89_A Ribosomal RNA small sub 97.1 0.0003 1E-08 57.7 3.9 34 179-212 79-112 (249)
37 3mgg_A Methyltransferase; NYSG 97.1 0.00059 2E-08 55.9 5.6 35 178-212 35-69 (276)
38 1jsx_A Glucose-inhibited divis 97.1 0.00033 1.1E-08 54.8 3.9 33 180-212 65-97 (207)
39 3dh0_A SAM dependent methyltra 97.1 0.00034 1.2E-08 55.2 3.9 43 168-212 27-70 (219)
40 4gek_A TRNA (CMO5U34)-methyltr 97.1 0.00044 1.5E-08 57.2 4.5 34 179-212 69-104 (261)
41 3bus_A REBM, methyltransferase 97.1 0.00096 3.3E-08 54.4 6.6 42 168-212 51-92 (273)
42 1fbn_A MJ fibrillarin homologu 97.0 0.00065 2.2E-08 54.5 5.0 35 178-212 72-106 (230)
43 3r4k_A Transcriptional regulat 97.0 0.00017 5.7E-09 59.7 1.5 57 39-104 9-65 (260)
44 3g5t_A Trans-aconitate 3-methy 97.0 0.0012 4.1E-08 54.9 6.7 34 179-212 35-69 (299)
45 4dcm_A Ribosomal RNA large sub 97.0 0.00086 2.9E-08 58.4 6.0 41 170-212 214-254 (375)
46 3dlc_A Putative S-adenosyl-L-m 97.0 0.00048 1.6E-08 53.9 4.0 41 168-212 34-74 (219)
47 1nkv_A Hypothetical protein YJ 97.0 0.00093 3.2E-08 53.9 5.9 42 168-212 26-67 (256)
48 2b3t_A Protein methyltransfera 97.0 0.0012 3.9E-08 54.6 6.4 33 180-212 109-141 (276)
49 3ujc_A Phosphoethanolamine N-m 97.0 0.00069 2.4E-08 54.8 4.9 42 168-212 45-86 (266)
50 3mb5_A SAM-dependent methyltra 97.0 0.0011 3.9E-08 53.6 6.1 43 169-213 84-127 (255)
51 3dli_A Methyltransferase; PSI- 97.0 0.0017 5.8E-08 52.1 7.0 33 178-212 39-71 (240)
52 1xdz_A Methyltransferase GIDB; 97.0 0.00044 1.5E-08 55.9 3.5 34 179-212 69-102 (240)
53 3f4k_A Putative methyltransfer 96.9 0.0012 4E-08 53.3 5.8 41 170-212 37-77 (257)
54 3ou2_A SAM-dependent methyltra 96.9 0.0019 6.6E-08 50.5 6.8 33 178-212 44-76 (218)
55 1nt2_A Fibrillarin-like PRE-rR 96.9 0.00089 3E-08 53.3 4.9 35 178-212 55-89 (210)
56 3ege_A Putative methyltransfer 96.9 0.00085 2.9E-08 54.8 4.9 42 168-213 24-65 (261)
57 1nv8_A HEMK protein; class I a 96.9 0.0008 2.7E-08 56.2 4.7 32 180-212 123-154 (284)
58 1kpg_A CFA synthase;, cyclopro 96.9 0.0012 4.1E-08 54.4 5.7 42 168-212 54-95 (287)
59 2xrn_A HTH-type transcriptiona 96.9 0.00033 1.1E-08 57.3 2.2 57 39-104 9-65 (241)
60 3tfw_A Putative O-methyltransf 96.9 0.0014 4.8E-08 53.4 5.9 34 179-212 62-96 (248)
61 2yxd_A Probable cobalt-precorr 96.9 0.0011 3.9E-08 50.2 5.1 40 169-212 26-65 (183)
62 2o57_A Putative sarcosine dime 96.9 0.00075 2.6E-08 55.9 4.2 45 168-213 68-114 (297)
63 1u2z_A Histone-lysine N-methyl 96.9 0.0011 3.7E-08 59.0 5.5 43 168-212 232-274 (433)
64 1vl5_A Unknown conserved prote 96.9 0.00067 2.3E-08 55.1 3.8 42 167-212 26-67 (260)
65 1yb2_A Hypothetical protein TA 96.9 0.0012 4.2E-08 54.4 5.4 42 169-212 101-143 (275)
66 3b73_A PHIH1 repressor-like pr 96.9 0.00014 4.8E-09 52.8 -0.4 61 38-113 15-77 (111)
67 2pjd_A Ribosomal RNA small sub 96.8 0.00085 2.9E-08 57.4 4.4 43 168-212 186-228 (343)
68 1jg1_A PIMT;, protein-L-isoasp 96.8 0.00054 1.9E-08 55.1 3.0 42 168-212 81-122 (235)
69 3kkz_A Uncharacterized protein 96.8 0.0011 3.8E-08 54.1 5.0 41 170-212 37-77 (267)
70 3ech_A MEXR, multidrug resista 96.8 0.0023 7.7E-08 47.2 6.2 49 36-88 37-85 (142)
71 1ve3_A Hypothetical protein PH 96.8 0.00082 2.8E-08 53.1 3.8 31 180-212 38-68 (227)
72 3vc1_A Geranyl diphosphate 2-C 96.8 0.0022 7.6E-08 53.7 6.5 46 165-212 103-148 (312)
73 2fk8_A Methoxy mycolic acid sy 96.8 0.0017 6E-08 54.3 5.7 42 168-212 80-121 (318)
74 3fzg_A 16S rRNA methylase; met 96.8 0.00091 3.1E-08 53.2 3.7 34 179-212 48-81 (200)
75 1qgp_A Protein (double strande 96.8 0.00062 2.1E-08 45.9 2.3 57 38-103 16-75 (77)
76 1mkm_A ICLR transcriptional re 96.8 0.00063 2.1E-08 55.8 2.8 56 39-104 11-66 (249)
77 2pwy_A TRNA (adenine-N(1)-)-me 96.7 0.0023 7.8E-08 51.6 6.1 43 168-212 86-129 (258)
78 3g5l_A Putative S-adenosylmeth 96.7 0.0016 5.6E-08 52.5 5.2 40 170-212 36-75 (253)
79 2yxe_A Protein-L-isoaspartate 96.7 0.0018 6.3E-08 50.8 5.3 42 169-212 68-110 (215)
80 2ozv_A Hypothetical protein AT 96.7 0.0013 4.3E-08 54.1 4.4 35 178-212 34-68 (260)
81 2ipx_A RRNA 2'-O-methyltransfe 96.7 0.00096 3.3E-08 53.5 3.6 35 178-212 75-110 (233)
82 1qbj_A Protein (double-strande 96.7 0.00085 2.9E-08 45.8 2.8 59 37-104 11-72 (81)
83 2h00_A Methyltransferase 10 do 96.7 0.00079 2.7E-08 54.6 3.2 33 180-212 65-97 (254)
84 2esr_A Methyltransferase; stru 96.7 0.0019 6.6E-08 49.1 5.1 33 179-212 30-62 (177)
85 2gpy_A O-methyltransferase; st 96.7 0.0015 5.2E-08 52.2 4.6 33 180-212 54-86 (233)
86 3ntv_A MW1564 protein; rossman 96.7 0.0011 3.7E-08 53.4 3.7 34 179-212 70-103 (232)
87 3iv6_A Putative Zn-dependent a 96.7 0.0025 8.4E-08 52.9 5.9 41 168-212 35-75 (261)
88 1m6y_A S-adenosyl-methyltransf 96.7 0.0019 6.7E-08 54.6 5.4 43 168-212 16-58 (301)
89 1o54_A SAM-dependent O-methylt 96.7 0.0026 9E-08 52.3 6.0 43 168-212 102-145 (277)
90 3uwp_A Histone-lysine N-methyl 96.6 0.0023 8E-08 56.6 5.7 43 168-212 163-205 (438)
91 2g7u_A Transcriptional regulat 96.6 0.00083 2.9E-08 55.3 2.7 55 39-104 17-71 (257)
92 3njr_A Precorrin-6Y methylase; 96.6 0.0024 8.3E-08 50.4 5.4 39 170-212 47-85 (204)
93 3duw_A OMT, O-methyltransferas 96.6 0.0013 4.5E-08 52.1 3.8 34 179-212 57-91 (223)
94 1ws6_A Methyltransferase; stru 96.6 0.0017 5.8E-08 48.8 4.3 31 180-212 41-71 (171)
95 2qe6_A Uncharacterized protein 96.6 0.0032 1.1E-07 52.2 6.2 33 180-212 77-112 (274)
96 3ccf_A Cyclopropane-fatty-acyl 96.6 0.0021 7E-08 52.9 5.0 39 170-212 49-87 (279)
97 2o0y_A Transcriptional regulat 96.6 0.00064 2.2E-08 56.1 1.9 56 39-104 26-81 (260)
98 3tr6_A O-methyltransferase; ce 96.6 0.0014 4.7E-08 52.0 3.8 33 180-212 64-97 (225)
99 3pqk_A Biofilm growth-associat 96.6 0.0023 7.7E-08 44.9 4.5 60 36-104 23-82 (102)
100 3ggd_A SAM-dependent methyltra 96.6 0.0026 8.9E-08 51.0 5.5 33 178-212 54-86 (245)
101 2bm8_A Cephalosporin hydroxyla 96.6 0.0019 6.6E-08 52.3 4.7 32 181-212 82-117 (236)
102 1o9g_A RRNA methyltransferase; 96.6 0.0016 5.5E-08 52.8 4.1 33 180-212 51-85 (250)
103 3gjy_A Spermidine synthase; AP 96.6 0.0016 5.4E-08 55.6 4.1 31 182-212 91-121 (317)
104 1xmk_A Double-stranded RNA-spe 96.6 0.00079 2.7E-08 45.7 1.8 58 38-104 13-71 (79)
105 3orh_A Guanidinoacetate N-meth 96.6 0.001 3.4E-08 53.9 2.7 33 179-212 59-91 (236)
106 2xvm_A Tellurite resistance pr 96.6 0.0029 1E-07 48.7 5.3 39 170-212 24-62 (199)
107 3opn_A Putative hemolysin; str 96.6 0.0037 1.3E-07 50.6 6.1 43 168-212 26-68 (232)
108 3grz_A L11 mtase, ribosomal pr 96.6 0.0035 1.2E-07 48.9 5.8 32 180-212 60-91 (205)
109 2jt1_A PEFI protein; solution 96.6 0.0009 3.1E-08 45.2 2.0 37 49-88 22-58 (77)
110 3hnr_A Probable methyltransfer 96.5 0.0022 7.6E-08 50.4 4.6 32 179-212 44-75 (220)
111 3c3p_A Methyltransferase; NP_9 96.5 0.0017 5.7E-08 51.1 3.8 33 180-212 56-89 (210)
112 1dus_A MJ0882; hypothetical pr 96.5 0.0026 8.8E-08 48.5 4.8 41 168-212 42-82 (194)
113 1u2w_A CADC repressor, cadmium 96.5 0.001 3.5E-08 48.6 2.3 67 30-104 36-102 (122)
114 2nxc_A L11 mtase, ribosomal pr 96.5 0.0027 9.3E-08 51.9 5.2 32 179-212 119-150 (254)
115 2oqg_A Possible transcriptiona 96.5 0.00096 3.3E-08 47.5 2.1 59 37-104 22-80 (114)
116 3cuo_A Uncharacterized HTH-typ 96.5 0.00097 3.3E-08 46.1 2.0 50 35-88 23-72 (99)
117 3cc8_A Putative methyltransfer 96.5 0.0016 5.4E-08 51.3 3.5 40 168-212 23-62 (230)
118 1qam_A ERMC' methyltransferase 96.5 0.0037 1.3E-07 50.9 5.8 42 167-212 19-60 (244)
119 2fhp_A Methylase, putative; al 96.5 0.0038 1.3E-07 47.6 5.5 33 179-212 43-75 (187)
120 2pxx_A Uncharacterized protein 96.5 0.0028 9.5E-08 49.3 4.8 33 179-212 41-73 (215)
121 3jth_A Transcription activator 96.5 0.0014 4.6E-08 45.7 2.6 64 32-104 19-82 (98)
122 1xtp_A LMAJ004091AAA; SGPP, st 96.5 0.0035 1.2E-07 50.3 5.4 42 168-212 83-124 (254)
123 3pfg_A N-methyltransferase; N, 96.5 0.0028 9.4E-08 51.5 4.7 32 179-212 49-80 (263)
124 3bja_A Transcriptional regulat 96.4 0.0029 9.9E-08 46.1 4.3 67 38-113 35-101 (139)
125 1i9g_A Hypothetical protein RV 96.4 0.0047 1.6E-07 50.6 6.1 43 168-212 89-132 (280)
126 2ia2_A Putative transcriptiona 96.4 0.0008 2.7E-08 55.7 1.3 55 39-104 24-78 (265)
127 2p7i_A Hypothetical protein; p 96.4 0.0022 7.5E-08 51.0 3.9 31 180-212 42-72 (250)
128 3adn_A Spermidine synthase; am 96.4 0.002 7E-08 54.2 3.7 33 180-212 83-115 (294)
129 1xn7_A Hypothetical protein YH 96.4 0.0017 6E-08 43.9 2.7 43 41-87 7-49 (78)
130 1p91_A Ribosomal RNA large sub 96.4 0.002 7E-08 52.5 3.6 33 180-212 85-117 (269)
131 3ftd_A Dimethyladenosine trans 96.4 0.0026 8.8E-08 52.2 4.2 43 167-212 20-62 (249)
132 2qww_A Transcriptional regulat 96.4 0.013 4.3E-07 43.5 7.8 67 38-113 43-111 (154)
133 1g8a_A Fibrillarin-like PRE-rR 96.4 0.0025 8.5E-08 50.7 4.0 35 178-212 71-106 (227)
134 3lbf_A Protein-L-isoaspartate 96.4 0.0055 1.9E-07 47.9 6.0 40 169-212 68-107 (210)
135 1sui_A Caffeoyl-COA O-methyltr 96.4 0.0032 1.1E-07 51.4 4.7 34 180-213 79-113 (247)
136 3r3h_A O-methyltransferase, SA 96.4 0.0026 8.8E-08 51.7 4.1 34 180-213 60-94 (242)
137 3e8s_A Putative SAM dependent 96.4 0.0025 8.4E-08 50.0 3.8 40 169-212 43-82 (227)
138 3thr_A Glycine N-methyltransfe 96.4 0.0026 8.7E-08 52.5 4.1 32 179-212 56-87 (293)
139 3tma_A Methyltransferase; thum 96.4 0.0039 1.3E-07 53.3 5.3 44 167-212 192-236 (354)
140 1wzn_A SAM-dependent methyltra 96.3 0.0049 1.7E-07 49.5 5.5 32 179-212 40-71 (252)
141 3bxo_A N,N-dimethyltransferase 96.3 0.0063 2.2E-07 48.2 6.1 32 179-212 39-70 (239)
142 3uzu_A Ribosomal RNA small sub 96.3 0.0025 8.5E-08 53.3 3.8 43 168-212 32-76 (279)
143 2hnk_A SAM-dependent O-methylt 96.3 0.0037 1.2E-07 50.3 4.6 33 180-212 60-93 (239)
144 2pbf_A Protein-L-isoaspartate 96.3 0.0062 2.1E-07 48.2 5.9 35 178-212 78-117 (227)
145 1i1n_A Protein-L-isoaspartate 96.3 0.0054 1.8E-07 48.6 5.4 35 178-212 75-110 (226)
146 3dr5_A Putative O-methyltransf 96.3 0.0068 2.3E-07 48.5 6.1 31 182-212 58-89 (221)
147 3u81_A Catechol O-methyltransf 96.3 0.0028 9.7E-08 50.3 3.8 33 180-212 58-91 (221)
148 1l3i_A Precorrin-6Y methyltran 96.3 0.0046 1.6E-07 47.0 4.8 33 178-212 31-63 (192)
149 2avd_A Catechol-O-methyltransf 96.3 0.0031 1.1E-07 50.0 3.9 34 179-212 68-102 (229)
150 3ocj_A Putative exported prote 96.3 0.0013 4.5E-08 55.0 1.7 35 178-212 116-151 (305)
151 2yqz_A Hypothetical protein TT 96.3 0.0064 2.2E-07 48.9 5.8 33 178-212 37-69 (263)
152 2hzt_A Putative HTH-type trans 96.3 0.0029 1E-07 44.9 3.3 77 18-113 5-82 (107)
153 1vbf_A 231AA long hypothetical 96.3 0.0066 2.2E-07 48.2 5.8 41 168-212 60-100 (231)
154 3lpm_A Putative methyltransfer 96.2 0.0038 1.3E-07 50.9 4.4 34 178-212 46-80 (259)
155 1dl5_A Protein-L-isoaspartate 96.2 0.0051 1.8E-07 51.8 5.3 42 169-212 66-108 (317)
156 2k02_A Ferrous iron transport 96.2 0.0018 6.1E-08 44.8 1.9 43 41-87 7-49 (87)
157 3bgv_A MRNA CAP guanine-N7 met 96.2 0.0058 2E-07 51.1 5.6 33 179-212 33-65 (313)
158 3fpf_A Mtnas, putative unchara 96.2 0.004 1.4E-07 52.6 4.4 35 178-212 120-154 (298)
159 4fsd_A Arsenic methyltransfera 96.2 0.0032 1.1E-07 54.6 3.9 34 179-212 82-116 (383)
160 1oyi_A Double-stranded RNA-bin 96.2 0.0026 9E-08 43.4 2.6 58 37-104 18-75 (82)
161 1r1u_A CZRA, repressor protein 96.2 0.0016 5.6E-08 46.1 1.7 47 37-88 27-73 (106)
162 4a5n_A Uncharacterized HTH-typ 96.2 0.0077 2.6E-07 44.7 5.4 79 16-113 15-94 (131)
163 3bwc_A Spermidine synthase; SA 96.2 0.0031 1.1E-07 53.1 3.6 34 179-212 94-127 (304)
164 3k0l_A Repressor protein; heli 96.2 0.0046 1.6E-07 46.7 4.2 67 38-113 48-114 (162)
165 2htj_A P fimbrial regulatory p 96.2 0.003 1E-07 42.5 2.9 44 40-87 4-47 (81)
166 3sm3_A SAM-dependent methyltra 96.2 0.0044 1.5E-07 48.9 4.3 32 179-212 29-60 (235)
167 3b3j_A Histone-arginine methyl 96.2 0.0077 2.6E-07 54.1 6.3 43 167-212 147-189 (480)
168 2b25_A Hypothetical protein; s 96.2 0.0068 2.3E-07 51.4 5.7 41 170-212 97-138 (336)
169 3e23_A Uncharacterized protein 96.1 0.005 1.7E-07 48.1 4.5 32 179-212 42-73 (211)
170 2y75_A HTH-type transcriptiona 96.1 0.0026 8.9E-08 46.6 2.6 47 50-104 25-71 (129)
171 2kko_A Possible transcriptiona 96.1 0.001 3.5E-08 47.5 0.3 45 39-88 28-72 (108)
172 3c3y_A Pfomt, O-methyltransfer 96.1 0.0053 1.8E-07 49.5 4.6 34 179-212 69-103 (237)
173 2gxg_A 146AA long hypothetical 96.1 0.025 8.7E-07 41.3 8.0 61 38-104 39-99 (146)
174 3m70_A Tellurite resistance pr 96.1 0.0048 1.6E-07 50.8 4.4 32 179-212 119-150 (286)
175 2fbh_A Transcriptional regulat 96.1 0.0055 1.9E-07 44.9 4.3 66 39-113 40-106 (146)
176 1iy9_A Spermidine synthase; ro 96.1 0.0031 1.1E-07 52.4 3.2 33 180-212 75-107 (275)
177 3a27_A TYW2, uncharacterized p 96.1 0.004 1.4E-07 51.5 3.8 35 178-212 117-151 (272)
178 1xj5_A Spermidine synthase 1; 96.1 0.0033 1.1E-07 53.9 3.3 34 179-212 119-152 (334)
179 4e2x_A TCAB9; kijanose, tetron 96.1 0.0054 1.9E-07 53.4 4.8 43 166-212 95-137 (416)
180 3cbg_A O-methyltransferase; cy 96.1 0.0044 1.5E-07 49.8 3.8 33 180-212 72-105 (232)
181 3l8d_A Methyltransferase; stru 96.1 0.0046 1.6E-07 49.2 3.9 31 180-212 53-83 (242)
182 1zq9_A Probable dimethyladenos 96.1 0.0065 2.2E-07 50.6 5.0 42 167-212 17-58 (285)
183 1ub9_A Hypothetical protein PH 96.1 0.0016 5.5E-08 45.0 1.0 69 31-104 11-79 (100)
184 1s3j_A YUSO protein; structura 96.0 0.012 4.3E-07 43.5 6.1 46 39-88 40-85 (155)
185 3bkw_A MLL3908 protein, S-aden 96.0 0.0089 3E-07 47.5 5.4 40 170-212 35-74 (243)
186 3gru_A Dimethyladenosine trans 96.0 0.0098 3.4E-07 50.1 5.9 42 167-212 39-80 (295)
187 1ne2_A Hypothetical protein TA 96.0 0.005 1.7E-07 47.9 3.8 33 179-212 50-82 (200)
188 3p9n_A Possible methyltransfer 96.0 0.0066 2.3E-07 46.8 4.5 32 180-212 44-75 (189)
189 1inl_A Spermidine synthase; be 96.0 0.0037 1.3E-07 52.5 3.2 33 180-212 90-122 (296)
190 3h2b_A SAM-dependent methyltra 96.0 0.0054 1.8E-07 47.6 3.9 30 181-212 42-71 (203)
191 3f6o_A Probable transcriptiona 96.0 0.002 7E-08 46.5 1.3 65 31-104 13-77 (118)
192 4htf_A S-adenosylmethionine-de 96.0 0.0088 3E-07 49.1 5.3 39 169-212 60-98 (285)
193 2y1w_A Histone-arginine methyl 96.0 0.01 3.4E-07 50.8 5.9 43 168-213 40-82 (348)
194 2pt6_A Spermidine synthase; tr 96.0 0.0037 1.3E-07 53.2 3.1 33 180-212 116-148 (321)
195 2fyt_A Protein arginine N-meth 95.9 0.0099 3.4E-07 50.7 5.8 35 178-213 62-96 (340)
196 3fut_A Dimethyladenosine trans 95.9 0.0082 2.8E-07 49.9 5.1 41 167-212 36-76 (271)
197 1yub_A Ermam, rRNA methyltrans 95.9 0.0039 1.3E-07 50.6 3.0 42 167-212 18-59 (245)
198 2ih2_A Modification methylase 95.9 0.0093 3.2E-07 51.8 5.6 44 168-213 29-73 (421)
199 1uir_A Polyamine aminopropyltr 95.9 0.0041 1.4E-07 52.6 3.2 33 180-212 77-109 (314)
200 3m33_A Uncharacterized protein 95.9 0.0049 1.7E-07 49.1 3.5 31 180-212 48-78 (226)
201 2o07_A Spermidine synthase; st 95.9 0.004 1.4E-07 52.5 3.1 34 179-212 94-127 (304)
202 3oop_A LIN2960 protein; protei 95.9 0.0025 8.5E-08 47.0 1.6 68 37-113 38-105 (143)
203 2yvl_A TRMI protein, hypotheti 95.9 0.012 4.1E-07 47.0 5.8 40 169-212 82-121 (248)
204 2i7c_A Spermidine synthase; tr 95.9 0.0041 1.4E-07 51.8 3.1 33 180-212 78-110 (283)
205 2jsc_A Transcriptional regulat 95.9 0.0018 6.2E-08 46.9 0.8 51 33-88 18-68 (118)
206 3hp7_A Hemolysin, putative; st 95.9 0.011 3.8E-07 49.7 5.7 42 169-212 75-116 (291)
207 4hg2_A Methyltransferase type 95.9 0.0042 1.4E-07 51.2 3.0 31 180-212 39-69 (257)
208 1mjf_A Spermidine synthase; sp 95.9 0.0044 1.5E-07 51.5 3.1 32 180-212 75-106 (281)
209 3evz_A Methyltransferase; NYSG 95.9 0.0066 2.3E-07 48.1 4.1 34 178-212 53-87 (230)
210 1y8c_A S-adenosylmethionine-de 95.9 0.011 3.8E-07 46.8 5.4 31 180-212 37-67 (246)
211 1jgs_A Multiple antibiotic res 95.8 0.0042 1.4E-07 45.2 2.6 67 38-113 36-102 (138)
212 1zx0_A Guanidinoacetate N-meth 95.8 0.0051 1.7E-07 49.3 3.2 32 180-212 60-91 (236)
213 3q7e_A Protein arginine N-meth 95.8 0.0068 2.3E-07 51.9 4.2 34 179-213 65-98 (349)
214 1on2_A Transcriptional regulat 95.8 0.0025 8.4E-08 47.2 1.2 50 50-113 21-70 (142)
215 1wy7_A Hypothetical protein PH 95.8 0.0081 2.8E-07 46.8 4.3 33 179-212 48-80 (207)
216 3g2m_A PCZA361.24; SAM-depende 95.8 0.0064 2.2E-07 50.4 3.9 40 168-212 73-112 (299)
217 2b2c_A Spermidine synthase; be 95.8 0.0051 1.7E-07 52.2 3.2 33 180-212 108-140 (314)
218 3tqs_A Ribosomal RNA small sub 95.8 0.0055 1.9E-07 50.5 3.3 41 168-212 19-59 (255)
219 2ex4_A Adrenal gland protein A 95.8 0.0047 1.6E-07 49.5 2.8 32 180-212 79-110 (241)
220 2fu4_A Ferric uptake regulatio 95.8 0.0045 1.5E-07 41.7 2.3 47 39-88 20-72 (83)
221 3nrv_A Putative transcriptiona 95.8 0.0035 1.2E-07 46.3 1.9 48 37-88 41-88 (148)
222 2nnn_A Probable transcriptiona 95.7 0.0024 8.4E-08 46.5 0.9 67 38-113 40-106 (140)
223 3kp7_A Transcriptional regulat 95.7 0.029 1E-06 41.5 7.0 43 39-86 41-83 (151)
224 2nyx_A Probable transcriptiona 95.7 0.014 4.8E-07 44.3 5.2 67 38-113 47-113 (168)
225 3cgg_A SAM-dependent methyltra 95.7 0.0098 3.3E-07 45.2 4.3 32 179-212 45-76 (195)
226 3r0a_A Putative transcriptiona 95.7 0.0036 1.2E-07 45.7 1.6 48 38-88 28-76 (123)
227 3lcc_A Putative methyl chlorid 95.7 0.0052 1.8E-07 49.0 2.7 29 182-212 68-96 (235)
228 3g3z_A NMB1585, transcriptiona 95.7 0.0039 1.3E-07 46.0 1.9 68 37-113 32-99 (145)
229 2hr3_A Probable transcriptiona 95.7 0.025 8.4E-07 41.5 6.3 69 36-113 35-104 (147)
230 2gb4_A Thiopurine S-methyltran 95.7 0.007 2.4E-07 49.6 3.5 31 180-212 68-98 (252)
231 2wte_A CSA3; antiviral protein 95.7 0.0024 8.3E-08 52.4 0.7 61 38-112 154-214 (244)
232 3deu_A Transcriptional regulat 95.7 0.0056 1.9E-07 46.6 2.7 68 38-113 55-122 (166)
233 3bro_A Transcriptional regulat 95.7 0.0086 2.9E-07 43.6 3.7 67 39-113 37-104 (141)
234 2frn_A Hypothetical protein PH 95.7 0.0075 2.6E-07 49.9 3.7 32 180-212 125-156 (278)
235 3e6m_A MARR family transcripti 95.6 0.017 5.7E-07 43.4 5.3 67 38-113 55-121 (161)
236 2ift_A Putative methylase HI07 95.6 0.0089 3E-07 46.9 3.9 31 181-212 54-84 (201)
237 1ixk_A Methyltransferase; open 95.6 0.012 4.1E-07 49.7 5.0 35 178-212 116-151 (315)
238 3fm5_A Transcriptional regulat 95.6 0.0034 1.2E-07 46.6 1.4 69 37-113 40-108 (150)
239 3bzb_A Uncharacterized protein 95.6 0.015 5.2E-07 48.1 5.5 33 179-212 78-110 (281)
240 2eth_A Transcriptional regulat 95.6 0.006 2E-07 45.6 2.7 63 37-104 45-107 (154)
241 3gdh_A Trimethylguanosine synt 95.6 0.0086 2.9E-07 47.8 3.8 31 180-212 78-108 (241)
242 2aot_A HMT, histamine N-methyl 95.6 0.014 4.8E-07 48.3 5.2 33 180-212 52-90 (292)
243 3bj6_A Transcriptional regulat 95.6 0.006 2.1E-07 45.2 2.6 62 38-104 42-103 (152)
244 1g6q_1 HnRNP arginine N-methyl 95.6 0.011 3.7E-07 50.2 4.5 33 180-213 38-70 (328)
245 3f6v_A Possible transcriptiona 95.6 0.0038 1.3E-07 47.4 1.4 67 29-104 51-117 (151)
246 1r18_A Protein-L-isoaspartate( 95.6 0.011 3.6E-07 47.0 4.1 35 178-212 82-122 (227)
247 3d2l_A SAM-dependent methyltra 95.6 0.0072 2.5E-07 48.0 3.1 30 180-212 33-62 (243)
248 3cdh_A Transcriptional regulat 95.5 0.0051 1.8E-07 45.8 2.1 67 38-113 45-111 (155)
249 2rdp_A Putative transcriptiona 95.5 0.0055 1.9E-07 45.3 2.2 66 39-113 45-110 (150)
250 3ajd_A Putative methyltransfer 95.5 0.009 3.1E-07 49.3 3.7 35 178-212 81-116 (274)
251 3eco_A MEPR; mutlidrug efflux 95.5 0.0054 1.9E-07 44.8 2.2 68 38-113 33-101 (139)
252 2zfu_A Nucleomethylin, cerebra 95.5 0.017 5.8E-07 45.2 5.2 30 179-213 66-95 (215)
253 3tm4_A TRNA (guanine N2-)-meth 95.5 0.011 3.6E-07 51.2 4.3 34 179-212 216-249 (373)
254 3ofk_A Nodulation protein S; N 95.5 0.0076 2.6E-07 47.2 3.1 33 178-212 49-81 (216)
255 3bpv_A Transcriptional regulat 95.5 0.0045 1.5E-07 45.0 1.6 67 38-113 31-97 (138)
256 1r1t_A Transcriptional repress 95.5 0.0068 2.3E-07 44.2 2.6 47 37-88 47-93 (122)
257 1lj9_A Transcriptional regulat 95.5 0.0061 2.1E-07 44.7 2.4 60 40-104 33-92 (144)
258 3boq_A Transcriptional regulat 95.5 0.035 1.2E-06 41.3 6.6 48 38-88 49-96 (160)
259 2fpo_A Methylase YHHF; structu 95.5 0.011 3.7E-07 46.4 3.9 31 181-212 55-85 (202)
260 3id6_C Fibrillarin-like rRNA/T 95.5 0.024 8.2E-07 46.0 6.0 45 168-212 63-109 (232)
261 2fa5_A Transcriptional regulat 95.5 0.006 2E-07 45.8 2.2 47 38-88 51-97 (162)
262 3s2w_A Transcriptional regulat 95.4 0.0053 1.8E-07 46.1 1.9 64 41-113 55-118 (159)
263 1ri5_A MRNA capping enzyme; me 95.4 0.011 3.8E-07 48.4 4.0 33 179-212 63-95 (298)
264 1r7j_A Conserved hypothetical 95.4 0.0051 1.7E-07 43.0 1.6 55 41-113 13-67 (95)
265 3bdd_A Regulatory protein MARR 95.4 0.013 4.4E-07 42.7 3.8 62 38-104 33-94 (142)
266 4azs_A Methyltransferase WBDD; 95.4 0.011 3.8E-07 54.0 4.1 31 180-212 66-96 (569)
267 2h1r_A Dimethyladenosine trans 95.4 0.009 3.1E-07 50.1 3.2 41 168-212 32-72 (299)
268 3tgn_A ADC operon repressor AD 95.4 0.01 3.5E-07 43.5 3.2 62 37-104 39-100 (146)
269 3cjn_A Transcriptional regulat 95.4 0.0068 2.3E-07 45.5 2.2 62 38-104 54-115 (162)
270 3r0q_C Probable protein argini 95.3 0.023 7.9E-07 49.1 5.8 34 178-212 61-94 (376)
271 2avn_A Ubiquinone/menaquinone 95.3 0.011 3.6E-07 48.0 3.5 31 180-212 54-84 (260)
272 1yyv_A Putative transcriptiona 95.3 0.016 5.6E-07 42.7 4.2 80 15-113 23-103 (131)
273 2kw5_A SLR1183 protein; struct 95.3 0.012 4E-07 45.6 3.5 28 183-212 32-59 (202)
274 2g72_A Phenylethanolamine N-me 95.3 0.0059 2E-07 50.4 1.8 32 180-212 71-102 (289)
275 4df3_A Fibrillarin-like rRNA/T 95.3 0.012 4.1E-07 47.9 3.6 35 178-212 75-110 (233)
276 1sfx_A Conserved hypothetical 95.3 0.0065 2.2E-07 42.2 1.7 47 38-88 22-68 (109)
277 2oxt_A Nucleoside-2'-O-methylt 95.3 0.0077 2.6E-07 49.8 2.4 32 178-212 72-103 (265)
278 2wa2_A Non-structural protein 95.3 0.0077 2.6E-07 50.2 2.4 32 178-212 80-111 (276)
279 3k69_A Putative transcription 95.2 0.026 8.9E-07 43.2 5.2 47 50-104 27-73 (162)
280 2bv6_A MGRA, HTH-type transcri 95.2 0.015 5.1E-07 42.5 3.6 62 38-104 39-100 (142)
281 4aik_A Transcriptional regulat 95.2 0.021 7.1E-07 42.9 4.5 65 41-113 36-100 (151)
282 3lwf_A LIN1550 protein, putati 95.2 0.02 6.8E-07 43.8 4.4 47 50-104 43-89 (159)
283 3jw4_A Transcriptional regulat 95.2 0.037 1.3E-06 40.7 5.8 46 40-88 45-91 (148)
284 2cmg_A Spermidine synthase; tr 95.2 0.011 3.7E-07 48.8 3.0 31 180-212 72-102 (262)
285 3lcv_B Sisomicin-gentamicin re 95.1 0.0034 1.2E-07 52.3 -0.1 34 179-212 131-164 (281)
286 1z7u_A Hypothetical protein EF 95.1 0.0044 1.5E-07 44.3 0.5 78 17-113 12-90 (112)
287 3hsr_A HTH-type transcriptiona 95.1 0.0037 1.2E-07 46.0 0.0 66 39-113 39-104 (140)
288 2lnb_A Z-DNA-binding protein 1 95.1 0.011 3.8E-07 39.5 2.4 56 38-103 21-76 (80)
289 1ylf_A RRF2 family protein; st 95.1 0.012 4.2E-07 44.3 2.9 46 50-104 29-74 (149)
290 3htx_A HEN1; HEN1, small RNA m 95.1 0.013 4.3E-07 56.2 3.5 33 180-212 721-754 (950)
291 3frh_A 16S rRNA methylase; met 95.1 0.017 5.8E-07 47.5 3.9 31 179-212 104-134 (253)
292 2fsw_A PG_0823 protein; alpha- 95.0 0.0077 2.6E-07 42.6 1.6 80 15-113 13-93 (107)
293 2pg4_A Uncharacterized protein 95.0 0.023 7.8E-07 39.1 4.0 57 42-104 21-78 (95)
294 2a61_A Transcriptional regulat 95.0 0.0041 1.4E-07 45.6 -0.0 67 38-113 35-101 (145)
295 3dmg_A Probable ribosomal RNA 95.0 0.023 8E-07 49.4 4.7 31 180-212 233-263 (381)
296 3t8r_A Staphylococcus aureus C 94.8 0.021 7.1E-07 42.8 3.6 47 50-104 27-73 (143)
297 3df8_A Possible HXLR family tr 94.8 0.0071 2.4E-07 43.3 0.9 74 17-113 17-93 (111)
298 1sqg_A SUN protein, FMU protei 94.8 0.018 6.2E-07 50.6 3.7 36 178-213 244-279 (429)
299 4hbl_A Transcriptional regulat 94.8 0.017 5.8E-07 42.8 3.0 68 37-113 42-109 (149)
300 2yxl_A PH0851 protein, 450AA l 94.7 0.03 1E-06 49.6 4.9 36 178-213 257-293 (450)
301 1z91_A Organic hydroperoxide r 94.7 0.012 4.2E-07 43.2 1.9 67 38-113 42-108 (147)
302 2p41_A Type II methyltransfera 94.6 0.014 4.9E-07 49.2 2.4 32 178-212 80-111 (305)
303 2f2e_A PA1607; transcription f 94.6 0.017 5.8E-07 43.3 2.6 75 19-113 16-90 (146)
304 2fbi_A Probable transcriptiona 94.6 0.0046 1.6E-07 45.2 -0.7 47 38-88 38-84 (142)
305 2cfx_A HTH-type transcriptiona 94.6 0.018 6E-07 42.9 2.6 46 38-87 7-52 (144)
306 2w25_A Probable transcriptiona 94.6 0.017 5.9E-07 43.2 2.5 46 38-87 9-54 (150)
307 2pex_A Transcriptional regulat 94.5 0.0086 3E-07 44.5 0.7 67 38-113 49-115 (153)
308 2pn6_A ST1022, 150AA long hypo 94.4 0.017 5.8E-07 43.1 2.2 46 38-87 5-50 (150)
309 2lkp_A Transcriptional regulat 94.4 0.015 5.3E-07 41.6 1.8 48 36-88 32-79 (119)
310 2vdw_A Vaccinia virus capping 94.4 0.024 8.3E-07 47.6 3.3 32 180-212 48-79 (302)
311 1xd7_A YWNA; structural genomi 94.4 0.022 7.4E-07 42.7 2.6 45 50-104 23-67 (145)
312 2fbk_A Transcriptional regulat 94.3 0.011 3.9E-07 45.4 1.0 48 38-88 71-120 (181)
313 2p5v_A Transcriptional regulat 94.3 0.021 7.3E-07 43.3 2.5 46 38-87 12-57 (162)
314 2i62_A Nicotinamide N-methyltr 94.3 0.005 1.7E-07 49.6 -1.2 33 179-212 55-87 (265)
315 3nqo_A MARR-family transcripti 94.2 0.021 7.4E-07 44.3 2.5 70 36-113 41-111 (189)
316 3sso_A Methyltransferase; macr 94.2 0.03 1E-06 49.3 3.5 33 180-212 216-255 (419)
317 1q1h_A TFE, transcription fact 94.1 0.013 4.5E-07 41.4 1.0 45 40-87 22-66 (110)
318 3hrs_A Metalloregulator SCAR; 94.1 0.025 8.4E-07 45.2 2.7 51 49-113 18-68 (214)
319 2x4h_A Hypothetical protein SS 94.1 0.033 1.1E-06 40.7 3.2 44 50-104 30-73 (139)
320 2zkz_A Transcriptional repress 94.1 0.011 3.8E-07 41.2 0.5 59 37-104 28-86 (99)
321 2r6z_A UPF0341 protein in RSP 94.0 0.044 1.5E-06 45.0 4.1 31 180-212 83-113 (258)
322 2d1h_A ST1889, 109AA long hypo 94.0 0.024 8.2E-07 39.2 2.2 36 50-88 35-70 (109)
323 1uwv_A 23S rRNA (uracil-5-)-me 94.0 0.041 1.4E-06 48.5 4.1 33 178-212 284-316 (433)
324 2qvo_A Uncharacterized protein 94.0 0.014 4.8E-07 40.3 0.9 48 51-112 30-80 (95)
325 3f3x_A Transcriptional regulat 94.0 0.088 3E-06 38.4 5.3 67 37-113 38-104 (144)
326 2dbb_A Putative HTH-type trans 94.0 0.024 8.2E-07 42.4 2.2 46 38-87 11-56 (151)
327 3u2r_A Regulatory protein MARR 93.9 0.036 1.2E-06 41.8 3.2 68 38-113 48-116 (168)
328 2gs9_A Hypothetical protein TT 93.9 0.034 1.2E-06 43.2 3.1 28 180-212 36-64 (211)
329 2h09_A Transcriptional regulat 93.9 0.018 6E-07 43.2 1.3 56 43-113 47-102 (155)
330 3q87_B N6 adenine specific DNA 93.8 0.023 7.9E-07 43.2 1.8 21 181-201 24-44 (170)
331 1tbx_A ORF F-93, hypothetical 93.8 0.026 9E-07 38.9 2.0 62 40-113 12-77 (99)
332 2cg4_A Regulatory protein ASNC 93.8 0.025 8.5E-07 42.4 2.0 46 38-87 10-55 (152)
333 1p6r_A Penicillinase repressor 93.8 0.021 7.2E-07 38.2 1.4 46 39-88 12-61 (82)
334 3i4p_A Transcriptional regulat 93.8 0.027 9.4E-07 42.8 2.2 47 37-87 4-50 (162)
335 2cyy_A Putative HTH-type trans 93.7 0.022 7.6E-07 42.6 1.6 46 38-87 9-54 (151)
336 2dk5_A DNA-directed RNA polyme 93.7 0.048 1.7E-06 37.7 3.2 46 40-88 24-70 (91)
337 2ia0_A Putative HTH-type trans 93.7 0.032 1.1E-06 42.9 2.5 46 38-87 19-64 (171)
338 3ldu_A Putative methylase; str 93.6 0.077 2.6E-06 46.1 5.1 34 167-202 184-217 (385)
339 1sfu_A 34L protein; protein/Z- 93.6 0.051 1.8E-06 36.2 3.0 43 42-88 21-63 (75)
340 2igt_A SAM dependent methyltra 93.6 0.056 1.9E-06 46.0 4.1 31 180-212 153-183 (332)
341 2vn2_A DNAD, chromosome replic 93.5 0.028 9.5E-07 41.3 1.8 51 51-104 51-102 (128)
342 3k0b_A Predicted N6-adenine-sp 93.5 0.083 2.8E-06 46.1 5.1 36 167-204 190-225 (393)
343 2qfm_A Spermine synthase; sper 93.5 0.053 1.8E-06 47.0 3.7 33 179-212 187-219 (364)
344 4g6q_A Putative uncharacterize 93.4 0.059 2E-06 41.9 3.6 66 34-104 21-88 (182)
345 4hc4_A Protein arginine N-meth 93.4 0.063 2.1E-06 46.7 4.2 32 180-212 83-114 (376)
346 2frh_A SARA, staphylococcal ac 93.4 0.026 8.9E-07 40.9 1.4 65 41-113 42-107 (127)
347 2fe3_A Peroxide operon regulat 93.4 0.087 3E-06 39.3 4.4 59 39-103 25-88 (145)
348 3giw_A Protein of unknown func 93.4 0.12 4.2E-06 43.0 5.7 33 180-212 78-113 (277)
349 1i1g_A Transcriptional regulat 93.4 0.028 9.6E-07 41.3 1.6 45 39-87 7-51 (141)
350 2f8l_A Hypothetical protein LM 93.3 0.032 1.1E-06 47.4 2.1 33 180-212 130-167 (344)
351 2e1c_A Putative HTH-type trans 93.3 0.034 1.1E-06 42.9 2.0 47 37-87 28-74 (171)
352 1ku9_A Hypothetical protein MJ 93.2 0.03 1E-06 40.9 1.6 44 41-88 31-75 (152)
353 3m6w_A RRNA methylase; rRNA me 93.2 0.066 2.3E-06 47.9 4.0 35 178-212 99-134 (464)
354 1bja_A Transcription regulator 93.2 0.018 6.1E-07 40.4 0.2 60 38-113 18-78 (95)
355 2k4b_A Transcriptional regulat 93.2 0.021 7.2E-07 40.2 0.6 47 38-88 37-87 (99)
356 2o03_A Probable zinc uptake re 93.0 0.041 1.4E-06 40.4 2.1 58 38-101 13-75 (131)
357 1af7_A Chemotaxis receptor met 93.0 0.054 1.8E-06 45.0 3.0 32 181-212 106-145 (274)
358 3k2z_A LEXA repressor; winged 93.0 0.047 1.6E-06 42.8 2.4 42 44-88 17-58 (196)
359 2xvc_A ESCRT-III, SSO0910; cel 92.9 0.04 1.4E-06 34.6 1.6 46 39-87 13-58 (59)
360 1j5y_A Transcriptional regulat 92.9 0.075 2.6E-06 41.4 3.5 56 38-104 23-79 (187)
361 1uly_A Hypothetical protein PH 92.9 0.067 2.3E-06 42.0 3.2 49 34-87 18-66 (192)
362 1vlm_A SAM-dependent methyltra 92.8 0.085 2.9E-06 41.3 3.8 21 181-201 48-68 (219)
363 3ldg_A Putative uncharacterize 92.8 0.12 4.2E-06 44.9 5.1 36 167-204 183-218 (384)
364 2a14_A Indolethylamine N-methy 92.7 0.021 7.2E-07 46.5 0.0 32 179-212 54-86 (263)
365 2dul_A N(2),N(2)-dimethylguano 92.6 0.1 3.6E-06 45.2 4.4 32 181-212 48-79 (378)
366 2oyr_A UPF0341 protein YHIQ; a 92.5 0.15 5.3E-06 41.8 5.0 29 182-212 90-118 (258)
367 3gcz_A Polyprotein; flavivirus 92.4 0.11 3.7E-06 43.4 4.0 42 169-212 81-122 (282)
368 2fxa_A Protease production reg 92.2 0.077 2.6E-06 41.9 2.8 66 39-113 51-116 (207)
369 2qlz_A Transcription factor PF 92.1 0.019 6.6E-07 46.7 -0.8 51 31-86 7-57 (232)
370 2as0_A Hypothetical protein PH 92.0 0.12 4.2E-06 44.7 4.1 32 180-212 217-248 (396)
371 3mwm_A ZUR, putative metal upt 92.0 0.13 4.3E-06 38.2 3.6 60 38-103 16-80 (139)
372 2okc_A Type I restriction enzy 92.0 0.094 3.2E-06 46.3 3.3 43 168-212 161-216 (445)
373 3k6r_A Putative transferase PH 91.8 0.1 3.4E-06 43.5 3.1 33 179-212 124-156 (278)
374 1v4r_A Transcriptional repress 91.7 0.16 5.6E-06 35.2 3.8 54 31-88 14-69 (102)
375 3m4x_A NOL1/NOP2/SUN family pr 91.7 0.11 3.6E-06 46.4 3.4 35 178-212 103-138 (456)
376 2p4w_A Transcriptional regulat 91.7 0.073 2.5E-06 42.2 2.1 65 35-104 14-79 (202)
377 4dmg_A Putative uncharacterize 91.5 0.13 4.3E-06 44.9 3.6 31 180-212 214-244 (393)
378 4b8x_A SCO5413, possible MARR- 91.5 0.038 1.3E-06 41.1 0.2 51 50-104 50-100 (147)
379 1cf7_A Protein (transcription 91.5 0.15 5.2E-06 34.0 3.2 36 50-88 29-65 (76)
380 3b5i_A S-adenosyl-L-methionine 91.4 0.19 6.3E-06 43.7 4.6 35 180-214 52-101 (374)
381 2hoe_A N-acetylglucosamine kin 91.4 0.086 2.9E-06 45.4 2.4 70 30-104 14-85 (380)
382 1mzb_A Ferric uptake regulatio 91.4 0.1 3.5E-06 38.4 2.5 57 39-101 21-83 (136)
383 2xig_A Ferric uptake regulatio 91.4 0.12 4.1E-06 38.8 2.9 59 37-101 28-91 (150)
384 2jjq_A Uncharacterized RNA met 91.3 0.17 5.7E-06 44.6 4.2 32 179-212 289-320 (425)
385 2v79_A DNA replication protein 91.2 0.061 2.1E-06 39.9 1.1 52 50-104 50-102 (135)
386 2frx_A Hypothetical protein YE 91.1 0.22 7.4E-06 44.6 4.8 33 180-212 117-150 (479)
387 3evf_A RNA-directed RNA polyme 91.0 0.19 6.5E-06 41.8 4.0 34 178-211 72-105 (277)
388 2yx1_A Hypothetical protein MJ 91.0 0.13 4.3E-06 43.7 3.0 31 179-212 194-224 (336)
389 3c0k_A UPF0064 protein YCCW; P 91.0 0.16 5.5E-06 44.0 3.7 32 180-212 220-251 (396)
390 4fx0_A Probable transcriptiona 90.8 0.13 4.6E-06 38.1 2.6 35 50-87 51-85 (148)
391 1bia_A BIRA bifunctional prote 90.7 0.23 8E-06 41.9 4.4 55 40-104 9-63 (321)
392 2b78_A Hypothetical protein SM 90.6 0.19 6.6E-06 43.5 3.9 32 180-212 212-243 (385)
393 1okr_A MECI, methicillin resis 90.5 0.053 1.8E-06 38.7 0.2 44 41-88 15-62 (123)
394 1wxx_A TT1595, hypothetical pr 90.4 0.16 5.5E-06 43.8 3.2 31 180-212 209-239 (382)
395 2efj_A 3,7-dimethylxanthine me 90.3 0.18 6.3E-06 43.9 3.5 34 181-214 53-103 (384)
396 2obp_A Putative DNA-binding pr 90.3 0.15 5.1E-06 35.7 2.3 49 50-104 35-83 (96)
397 3ll7_A Putative methyltransfer 90.3 0.17 5.9E-06 44.4 3.3 30 181-212 94-123 (410)
398 2k4m_A TR8_protein, UPF0146 pr 90.3 0.23 7.9E-06 37.6 3.5 32 180-212 35-67 (153)
399 2g9w_A Conserved hypothetical 90.2 0.11 3.8E-06 38.1 1.7 48 38-88 11-62 (138)
400 2b9e_A NOL1/NOP2/SUN domain fa 90.1 0.23 7.9E-06 41.8 3.8 35 178-212 100-135 (309)
401 3i71_A Ethanolamine utilizatio 90.1 0.37 1.3E-05 30.3 3.7 50 44-104 11-60 (68)
402 1z6r_A MLC protein; transcript 90.0 0.18 6E-06 43.7 3.1 52 33-88 13-64 (406)
403 1sd4_A Penicillinase repressor 89.6 0.11 3.7E-06 37.1 1.3 47 38-88 12-62 (126)
404 3o4f_A Spermidine synthase; am 89.5 0.27 9.4E-06 41.2 3.8 34 179-212 82-115 (294)
405 2pjp_A Selenocysteine-specific 89.4 0.27 9.1E-06 35.4 3.2 54 39-104 10-63 (121)
406 2w57_A Ferric uptake regulatio 89.2 0.15 5.3E-06 38.2 1.8 57 39-101 20-82 (150)
407 1p4x_A Staphylococcal accessor 89.1 0.099 3.4E-06 42.8 0.7 63 38-104 160-223 (250)
408 3bt7_A TRNA (uracil-5-)-methyl 88.8 0.48 1.6E-05 40.6 4.9 30 181-212 214-243 (369)
409 1z05_A Transcriptional regulat 88.7 0.21 7.1E-06 43.7 2.6 52 33-88 36-87 (429)
410 2xyq_A Putative 2'-O-methyl tr 88.6 0.43 1.5E-05 39.9 4.4 34 178-213 61-101 (290)
411 3v97_A Ribosomal RNA large sub 88.3 0.51 1.8E-05 44.2 5.2 33 167-201 179-211 (703)
412 3maj_A DNA processing chain A; 88.0 0.26 8.9E-06 42.9 2.7 52 39-102 331-382 (382)
413 1jhg_A Trp operon repressor; c 87.8 0.27 9.2E-06 34.6 2.2 42 34-80 43-84 (101)
414 2zig_A TTHA0409, putative modi 87.4 0.41 1.4E-05 39.8 3.5 32 180-213 235-266 (297)
415 2o0m_A Transcriptional regulat 87.3 0.11 3.9E-06 44.3 0.0 60 38-113 22-81 (345)
416 3eld_A Methyltransferase; flav 87.2 0.3 1E-05 41.1 2.5 35 178-212 79-113 (300)
417 2b0l_A GTP-sensing transcripti 87.1 0.41 1.4E-05 33.5 2.9 45 40-88 32-77 (102)
418 3u1d_A Uncharacterized protein 87.0 0.92 3.1E-05 34.2 4.9 88 39-142 32-126 (151)
419 3rkx_A Biotin-[acetyl-COA-carb 86.7 0.34 1.2E-05 41.1 2.7 57 39-104 6-63 (323)
420 1m6e_X S-adenosyl-L-methionnin 85.9 0.24 8.1E-06 42.8 1.3 36 179-214 50-101 (359)
421 3p8z_A Mtase, non-structural p 85.8 0.74 2.5E-05 37.7 4.0 43 168-212 68-110 (267)
422 2qlz_A Transcription factor PF 85.4 0.82 2.8E-05 36.9 4.2 44 40-88 169-212 (232)
423 3s1s_A Restriction endonucleas 85.3 0.79 2.7E-05 43.8 4.6 34 179-212 320-356 (878)
424 2yu3_A DNA-directed RNA polyme 85.3 0.3 1E-05 34.0 1.3 48 38-88 39-87 (95)
425 3cta_A Riboflavin kinase; stru 85.2 0.2 6.8E-06 40.0 0.5 53 50-113 26-78 (230)
426 3eyi_A Z-DNA-binding protein 1 85.1 0.9 3.1E-05 29.6 3.4 47 39-88 13-59 (72)
427 2py6_A Methyltransferase FKBM; 84.6 1 3.5E-05 39.3 4.8 33 179-211 225-259 (409)
428 2qq9_A Diphtheria toxin repres 84.5 0.51 1.7E-05 37.6 2.6 50 50-113 23-72 (226)
429 3tqn_A Transcriptional regulat 84.4 0.73 2.5E-05 32.6 3.1 36 50-88 31-67 (113)
430 1fx7_A Iron-dependent represso 84.4 0.36 1.2E-05 38.6 1.6 48 52-113 25-72 (230)
431 3lkz_A Non-structural protein 83.9 0.77 2.6E-05 38.7 3.4 43 168-212 84-126 (321)
432 2p5k_A Arginine repressor; DNA 83.9 0.9 3.1E-05 28.2 3.1 35 43-84 12-51 (64)
433 2w48_A Sorbitol operon regulat 83.6 0.76 2.6E-05 38.5 3.4 35 50-87 20-55 (315)
434 2ek5_A Predicted transcription 83.5 1.1 3.7E-05 32.6 3.8 36 50-88 26-62 (129)
435 1i4w_A Mitochondrial replicati 83.4 1.2 4E-05 38.3 4.6 32 181-212 59-90 (353)
436 3eyy_A Putative iron uptake re 83.4 0.45 1.6E-05 35.3 1.7 46 39-88 22-72 (145)
437 3v97_A Ribosomal RNA large sub 83.0 1.1 3.7E-05 42.0 4.5 32 180-212 539-570 (703)
438 1hsj_A Fusion protein consisti 82.5 0.57 2E-05 41.2 2.3 65 40-112 408-473 (487)
439 4ets_A Ferric uptake regulatio 82.0 0.98 3.3E-05 34.2 3.1 59 38-102 35-100 (162)
440 1p4x_A Staphylococcal accessor 81.9 0.46 1.6E-05 38.7 1.3 65 41-113 39-104 (250)
441 3by6_A Predicted transcription 81.8 1 3.6E-05 32.5 3.1 36 50-88 33-69 (126)
442 3neu_A LIN1836 protein; struct 81.7 1.5 5E-05 31.6 3.9 36 50-88 35-71 (125)
443 2p8t_A Hypothetical protein PH 81.7 0.51 1.7E-05 37.4 1.5 49 50-113 29-77 (200)
444 3axs_A Probable N(2),N(2)-dime 81.1 1.2 4E-05 38.8 3.7 33 180-212 52-85 (392)
445 3elk_A Putative transcriptiona 80.8 0.44 1.5E-05 34.2 0.8 73 32-113 10-89 (117)
446 4esf_A PADR-like transcription 80.6 0.93 3.2E-05 32.4 2.5 71 34-113 9-86 (117)
447 4auk_A Ribosomal RNA large sub 80.5 1.6 5.4E-05 37.8 4.3 33 178-212 209-241 (375)
448 3dv8_A Transcriptional regulat 80.3 1.7 5.8E-05 33.3 4.1 35 51-88 169-203 (220)
449 3tka_A Ribosomal RNA small sub 80.2 2.1 7.1E-05 36.7 4.8 44 168-213 47-91 (347)
450 2ar0_A M.ecoki, type I restric 80.1 1.2 4E-05 40.4 3.5 23 180-202 169-191 (541)
451 3c6k_A Spermine synthase; sper 79.9 1.5 5E-05 38.2 3.9 32 180-212 205-236 (381)
452 2oz6_A Virulence factor regula 79.5 1.5 5.2E-05 33.2 3.6 35 51-88 164-198 (207)
453 4ham_A LMO2241 protein; struct 79.3 1.4 4.8E-05 32.0 3.1 36 50-88 36-72 (134)
454 3ryp_A Catabolite gene activat 79.1 1.6 5.5E-05 33.1 3.6 35 51-88 167-201 (210)
455 2zcw_A TTHA1359, transcription 78.8 1.7 5.7E-05 33.1 3.6 36 50-88 145-180 (202)
456 3lmm_A Uncharacterized protein 78.8 0.83 2.8E-05 41.9 2.1 54 39-104 433-491 (583)
457 3f8b_A Transcriptional regulat 78.7 1.1 3.8E-05 31.8 2.4 73 32-113 8-89 (116)
458 1tc3_C Protein (TC3 transposas 78.4 0.67 2.3E-05 26.6 0.9 26 50-78 20-45 (51)
459 3e97_A Transcriptional regulat 78.3 1.9 6.6E-05 33.4 3.9 36 50-88 174-209 (231)
460 2gau_A Transcriptional regulat 78.2 2.2 7.6E-05 33.0 4.2 36 50-88 179-214 (232)
461 1yg2_A Gene activator APHA; vi 78.1 0.76 2.6E-05 35.2 1.4 66 39-113 5-79 (179)
462 3c7j_A Transcriptional regulat 78.1 1.9 6.5E-05 34.5 3.9 41 44-88 43-83 (237)
463 3qph_A TRMB, A global transcri 78.0 0.17 5.7E-06 43.4 -2.7 60 36-104 18-77 (342)
464 4ev0_A Transcription regulator 78.0 1.7 5.8E-05 33.2 3.4 36 50-88 162-197 (216)
465 3d0s_A Transcriptional regulat 77.9 2.2 7.4E-05 33.0 4.1 36 50-88 176-211 (227)
466 3lmm_A Uncharacterized protein 77.8 0.45 1.5E-05 43.6 0.0 46 39-88 519-564 (583)
467 1stz_A Heat-inducible transcri 77.8 1.3 4.4E-05 37.7 2.9 41 44-88 30-72 (338)
468 3iwz_A CAP-like, catabolite ac 77.7 1.8 6.3E-05 33.3 3.6 35 51-88 187-221 (230)
469 3la7_A Global nitrogen regulat 77.6 2.2 7.7E-05 33.5 4.1 36 50-88 192-227 (243)
470 2vxz_A Pyrsv_GP04; viral prote 77.6 1.3 4.5E-05 33.4 2.4 44 40-88 15-58 (165)
471 2gqq_A Leucine-responsive regu 77.1 0.21 7.1E-06 37.7 -2.1 44 39-86 16-59 (163)
472 3b02_A Transcriptional regulat 76.7 1.6 5.3E-05 33.1 2.8 35 51-88 139-173 (195)
473 3e6c_C CPRK, cyclic nucleotide 76.4 2.4 8.3E-05 33.4 4.0 36 50-88 176-211 (250)
474 3l7w_A Putative uncharacterize 76.3 0.15 5.2E-06 36.0 -2.9 68 37-113 10-81 (108)
475 3kor_A Possible Trp repressor; 75.6 3.1 0.00011 30.0 3.9 40 34-79 61-100 (119)
476 3oio_A Transcriptional regulat 75.4 1.3 4.5E-05 30.8 2.0 33 50-85 22-54 (113)
477 2qy6_A UPF0209 protein YFCK; s 75.4 1.9 6.6E-05 35.1 3.2 33 180-212 60-104 (257)
478 2esh_A Conserved hypothetical 75.2 2.9 0.0001 29.6 3.8 72 36-113 13-90 (118)
479 2bgc_A PRFA; bacterial infecti 74.9 4.1 0.00014 31.8 5.0 35 51-88 169-204 (238)
480 3f2g_A Alkylmercury lyase; MER 74.6 2.6 9E-05 33.7 3.7 41 41-88 27-67 (220)
481 3dkw_A DNR protein; CRP-FNR, H 74.6 1.9 6.6E-05 33.1 2.9 36 50-88 177-212 (227)
482 1zyb_A Transcription regulator 74.1 2.4 8.1E-05 33.1 3.4 35 51-88 186-220 (232)
483 1ft9_A Carbon monoxide oxidati 74.1 2.1 7.3E-05 33.0 3.1 35 51-88 163-197 (222)
484 1rjd_A PPM1P, carboxy methyl t 73.6 3 0.0001 35.4 4.0 35 180-214 97-131 (334)
485 3lkd_A Type I restriction-modi 73.5 1.6 5.3E-05 39.7 2.4 33 180-212 221-256 (542)
486 3sxy_A Transcriptional regulat 73.1 2 6.8E-05 33.6 2.7 37 49-88 33-69 (218)
487 2fmy_A COOA, carbon monoxide o 73.1 2.4 8.1E-05 32.6 3.1 35 50-87 166-200 (220)
488 3khk_A Type I restriction-modi 73.0 1.3 4.6E-05 40.1 1.8 31 182-212 246-291 (544)
489 1lva_A Selenocysteine-specific 72.9 2.2 7.5E-05 34.7 2.9 46 40-88 145-191 (258)
490 3ic7_A Putative transcriptiona 72.7 0.95 3.2E-05 32.7 0.6 36 50-88 33-69 (126)
491 3lsg_A Two-component response 72.5 2.1 7.1E-05 29.2 2.3 34 50-86 18-51 (103)
492 3kcc_A Catabolite gene activat 72.1 2.9 0.0001 33.3 3.5 35 51-88 217-251 (260)
493 1hw1_A FADR, fatty acid metabo 71.6 3.3 0.00011 32.7 3.7 36 50-88 29-65 (239)
494 3mkl_A HTH-type transcriptiona 71.2 2.1 7.1E-05 30.2 2.2 25 50-77 22-46 (120)
495 3cuq_B Vacuolar protein-sortin 71.0 2.7 9.2E-05 33.5 3.0 36 50-88 167-202 (218)
496 2hs5_A Putative transcriptiona 70.8 2.9 9.7E-05 33.4 3.1 37 49-88 49-85 (239)
497 2pi2_A Replication protein A 3 70.1 0.91 3.1E-05 37.4 0.0 58 37-103 208-268 (270)
498 3l4g_A Phenylalanyl-tRNA synth 69.8 0.94 3.2E-05 40.8 0.0 65 37-113 6-71 (508)
499 3ihu_A Transcriptional regulat 69.5 3.3 0.00011 32.4 3.2 37 49-88 37-73 (222)
500 2gmg_A Hypothetical protein PF 69.3 1.9 6.4E-05 30.5 1.5 26 37-64 12-37 (105)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.97 E-value=6.9e-32 Score=235.64 Aligned_cols=186 Identities=16% Similarity=0.219 Sum_probs=160.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCC
Q 040620 14 FQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNE 93 (214)
Q Consensus 14 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~ 93 (214)
.++...|++++.||+.+++|++|++|||||+|++.++|+|++|||+++|+++ +.++||||+|++.|+|.+... +
T Consensus 6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~---~~l~rlLr~L~~~gll~~~~~---~ 79 (353)
T 4a6d_A 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASA---HGTELLLDICVSLKLLKVETR---G 79 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEE---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCH---HHHHHHHHHHHHCCCEEEecc---C
Confidence 3788889999999999999999999999999997668999999999999999 999999999999999986542 1
Q ss_pred CccceeeCCCCCcccccccc----ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH----------------
Q 040620 94 QEEESILLPPHLDFFSRISL----QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG---------------- 153 (214)
Q Consensus 94 ~~~~~y~~t~~~~~~s~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g---------------- 153 (214)
+ .++|++|+. ++.++ +.++..++.++. ...+..|.+|.+.+++++ .+|...+|
T Consensus 80 ~-~~~y~~t~~----s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~ 152 (353)
T 4a6d_A 80 G-KAFYRNTEL----SSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGE 152 (353)
T ss_dssp T-EEEEEECHH----HHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred c-cceeeCCHH----HHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHH
Confidence 1 468999999 87654 467788776654 357889999999999886 33433322
Q ss_pred --HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCCC
Q 040620 154 --IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACHL 214 (214)
Q Consensus 154 --~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 214 (214)
.|+++|...+....+.+++.++ +++.++|||||||+|.++++++++||+++++++|+|+
T Consensus 153 ~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~ 213 (353)
T 4a6d_A 153 RLQFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPE 213 (353)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHH
Confidence 7999999988888888999998 7888999999999999999999999999999999983
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.97 E-value=1.1e-30 Score=228.87 Aligned_cols=196 Identities=24% Similarity=0.320 Sum_probs=167.4
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCC-CCCCHHHHHHHcCC--CCCCcc---cHHHHHHHHHhCC
Q 040620 9 GAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSG-QPMTLTQIIVALNV--HPNKTR---CTQILVCLLAHSG 82 (214)
Q Consensus 9 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~-~p~t~~eLA~~~g~--~~~~~~---~l~rlLr~L~~~g 82 (214)
...+..+++..+++++.+++.+++|++|+++||||+|++++ +|+|++|||+++|+ +| + .|+||||+|++.|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~---~~~~~l~rlLr~L~~~g 89 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANP---EAPDMVDRILRLLASYN 89 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCT---THHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCc---cchhhHHHHHHHHHhCC
Confidence 45668899999999999999999999999999999999864 69999999999998 88 7 9999999999999
Q ss_pred ceeeecCC-CCCCccceeeCCCCCcccccccc-c---cchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH----
Q 040620 83 FFVQQKDG-KNEQEEESILLPPHLDFFSRISL-Q---LQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG---- 153 (214)
Q Consensus 83 ~l~~~~~~-~~~~~~~~y~~t~~~~~~s~~l~-~---~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g---- 153 (214)
+|+++..+ .++..+++|++|+. ++.|+ + .++++++.++..+.++..|.+|.+++|+++ ++|+..+|
T Consensus 90 ~l~~~~~~~~~g~~~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~ 164 (364)
T 3p9c_A 90 VVTCLVEEGKDGRLSRSYGAAPV----CKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAF 164 (364)
T ss_dssp SEEEEEEECSSSCEEEEEEECGG----GGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHH
T ss_pred CEEEeccccCCCCcCCEEecCHH----HHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHH
Confidence 99987310 00100268999999 99887 2 478888877766778899999999999886 67766544
Q ss_pred -----------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 -----------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 -----------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|
T Consensus 165 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 234 (364)
T 3p9c_A 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLP 234 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCH
Confidence 6889998888777778888886 3667899999999999999999999999999999986
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.97 E-value=7.6e-30 Score=221.83 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=161.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCC
Q 040620 13 HFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKN 92 (214)
Q Consensus 13 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 92 (214)
..++..++++++.|++.+.+|++++++||||+|++ +|+|++|||+++|+++ +.++||||+|++.|+|++ .
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~---~~l~rlLr~l~~~g~l~~-~---- 88 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDA---DALRRVLRLLAVRDVVRE-S---- 88 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE-E----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHhCCCEEe-c----
Confidence 45788899999999999999999999999999986 7999999999999999 999999999999999999 4
Q ss_pred CCccceeeCCCCCcccccccc---ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH---------------H
Q 040620 93 EQEEESILLPPHLDFFSRISL---QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG---------------I 154 (214)
Q Consensus 93 ~~~~~~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g---------------~ 154 (214)
+++|++|+. ++.|+ +.++.+++.++.++..+..|.+|++++|++. ++|...+| .
T Consensus 89 ---~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~ 160 (348)
T 3lst_A 89 ---DGRFALTDK----GAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEAL 160 (348)
T ss_dssp ---TTEEEECTT----TGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred ---CCEEecCHH----HHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHH
Confidence 689999999 99887 3578888877666667899999999999876 44544333 6
Q ss_pred HHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 155 FYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 155 f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
|.++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|
T Consensus 161 f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 217 (348)
T 3lst_A 161 YYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH
T ss_pred HHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH
Confidence 889998888877788899988 777899999999999999999999999999999986
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.96 E-value=3.4e-29 Score=219.63 Aligned_cols=199 Identities=21% Similarity=0.292 Sum_probs=163.2
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcC---CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCce
Q 040620 9 GAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNS---GQPMTLTQIIVALN-VHPNKTRCTQILVCLLAHSGFF 84 (214)
Q Consensus 9 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~---~~p~t~~eLA~~~g-~~~~~~~~l~rlLr~L~~~g~l 84 (214)
.+.+..+++..+++++.+++.+++|++|+++||||+|++. ++|+|++|||+++| .+|.+++.|+||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 3446888999999999999999999999999999999973 25799999999998 4772223999999999999999
Q ss_pred eeecCCC-CCCccceeeCCCCCcccccccc----ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH------
Q 040620 85 VQQKDGK-NEQEEESILLPPHLDFFSRISL----QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG------ 153 (214)
Q Consensus 85 ~~~~~~~-~~~~~~~y~~t~~~~~~s~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g------ 153 (214)
.+..... ++..+++|++|+. ++.|+ +.++++++.++..+.++..|.+|.+++|+++ ++|+..+|
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~ 168 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPV----CKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDY 168 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTT----HHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHH
T ss_pred EEecccCCCCcccceeCcCHH----HHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHH
Confidence 9872100 0100268999999 99887 2568888877766678899999999999876 56665433
Q ss_pred ---------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 ---------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 ---------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|
T Consensus 169 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 236 (368)
T 3reo_A 169 HGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLP 236 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HhhCHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehH
Confidence 6899999888777778888886 3677899999999999999999999999999999986
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.96 E-value=2.5e-29 Score=218.79 Aligned_cols=194 Identities=38% Similarity=0.637 Sum_probs=163.8
Q ss_pred CCchhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 8 NGAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+.++++.+++..+++++.+++.+.+|++++++|||++|+..++|+|++|||+++|++|.+++.++||||+|++.|+|++.
T Consensus 8 ~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 8 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 34578899999999999999999999999999999999975459999999999999642238999999999999999988
Q ss_pred c-CCCCCCccceeeCCCCCcccccccc---ccchHHHHHHhhccchhhhhHhHHHhhc-CCCCChhhHHHH---------
Q 040620 88 K-DGKNEQEEESILLPPHLDFFSRISL---QLQGSTILLLIADATFTTSFHFLSTWLQ-NDDQTLFGTADG--------- 153 (214)
Q Consensus 88 ~-~~~~~~~~~~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~lr-~~~~~~f~~~~g--------- 153 (214)
. . +++|++|+. ++.|+ +.+++.++.++.++.++..|.+|++++| ++. ++|...+|
T Consensus 88 ~~~------~~~y~~t~~----s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~ 156 (352)
T 1fp2_A 88 TKE------EESYALTVA----SELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDK 156 (352)
T ss_dssp ESS------SEEEEECHH----HHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHH
T ss_pred cCC------CCeEeCCHH----HHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHh
Confidence 2 1 589999999 99887 3468888877766667889999999999 654 66655433
Q ss_pred ------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 ------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 ------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|........+. ++.+++.+.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 157 ~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 221 (352)
T 1fp2_A 157 NPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221 (352)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred ChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCH
Confidence 6888888877766566 7778434777899999999999999999999999999999985
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.96 E-value=2.8e-29 Score=218.85 Aligned_cols=200 Identities=34% Similarity=0.591 Sum_probs=163.0
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 9 GAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 9 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+++.+++..+++++.+++.+.+|++++++|||++|+..++|+|++|||+++|++|.+++.|+||||+|++.|+|++..
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp TTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred chHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEec
Confidence 34678899999999999999999999999999999999754599999999999996433489999999999999999871
Q ss_pred C--CC-CCCccceeeCCCCCcccccccc---ccchHHHHHHhhccchhhhhHhHHHhhcCCC-CChhhHHHH--------
Q 040620 89 D--GK-NEQEEESILLPPHLDFFSRISL---QLQGSTILLLIADATFTTSFHFLSTWLQNDD-QTLFGTADG-------- 153 (214)
Q Consensus 89 ~--~~-~~~~~~~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~-~~~f~~~~g-------- 153 (214)
+ +. +++.+++|++|+. ++.|+ +.+++.++.++.++.++..|.+|++++|++. .++|+..+|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~ 158 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPP----SKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLN 158 (358)
T ss_dssp ECCSSSSCCCEEEEEECHH----HHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHT
T ss_pred ccccccCCCCCCEEeCCHH----HHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHh
Confidence 0 00 0000279999999 99887 3478888887766677899999999999884 266665433
Q ss_pred ---------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 ---------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 ---------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|...+.... .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 159 ~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 226 (358)
T 1zg3_A 159 KDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 226 (358)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECH
T ss_pred cChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccH
Confidence 46677877666555 678888433677889999999999999999999999999999986
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.96 E-value=7e-29 Score=217.54 Aligned_cols=182 Identities=22% Similarity=0.276 Sum_probs=159.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCC
Q 040620 13 HFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKN 92 (214)
Q Consensus 13 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 92 (214)
..+...++++++.+++.+++|++++++||||+|++ +|+|++|||+++|+++ +.++||||+|++.|+|++++
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~---~~l~rlLr~L~~~g~l~~~~---- 105 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHE---QTLRRLLRLLATVGVFDDLG---- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSSEECS----
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCCEEEeC----
Confidence 44677889999999999999999999999999995 8999999999999999 99999999999999999976
Q ss_pred CCccce-eeCCCCCcccccccc---ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH---------------
Q 040620 93 EQEEES-ILLPPHLDFFSRISL---QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG--------------- 153 (214)
Q Consensus 93 ~~~~~~-y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g--------------- 153 (214)
+++ |++|+. ++.|. +.++..++.++..+..+..|.++.++++++. ++|...+|
T Consensus 106 ---~~~~y~~t~~----s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 177 (369)
T 3gwz_A 106 ---HDDLFAQNAL----SAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARE 177 (369)
T ss_dssp ---STTEEECCHH----HHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred ---CCceEecCHH----HHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHH
Confidence 578 999999 99987 3568888877766557789999999999876 34443322
Q ss_pred HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 ~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 178 ~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 235 (369)
T 3gwz_A 178 LFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERP 235 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCH
Confidence 6888898887777788888888 777899999999999999999999999999999985
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.96 E-value=3.9e-28 Score=209.24 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCC
Q 040620 15 QAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQ 94 (214)
Q Consensus 15 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 94 (214)
.+...+++++.+++.+.+|++++++|||++|.+ +|+|++|||+++|+++ +.++||||+|++.|+|.+.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~---~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDA---ERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHhCCceEecC------
Confidence 677899999999999999999999999999986 8999999999999999 99999999999999999986
Q ss_pred ccceeeCCCCCcccccccc--ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH---------------HHHH
Q 040620 95 EEESILLPPHLDFFSRISL--QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG---------------IFYE 157 (214)
Q Consensus 95 ~~~~y~~t~~~~~~s~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g---------------~f~~ 157 (214)
++.|++|+. ++.|+ +.++..++.++.+... ..|.+|.++++++. ++|+..+| .|++
T Consensus 76 -~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 76 -RDGYANTPT----SHLLRDVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp -TTEEEECHH----HHTTSSSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred -CCeEecCHH----HHHHhCCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 589999999 98887 3478888877765444 88999999999876 55554432 6888
Q ss_pred HhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 158 AMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 158 am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
+| ..+....+.+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|+|
T Consensus 149 ~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 200 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDRE 200 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECT
T ss_pred HH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcH
Confidence 99 777767778888887 666 99999999999999999999999999999985
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.95 E-value=9.2e-29 Score=213.31 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccc
Q 040620 18 AQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEE 97 (214)
Q Consensus 18 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~ 97 (214)
..+++++.||+.+++|++|+++||||+|++ +|+|++|||+++|+++ +.++||||+|++.|++.+++ ++
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~---~~l~rlLr~l~~~gl~~~~~-------~~ 74 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHA---DSLDRLLRHLVAVGLFTRDG-------QG 74 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECT-------TS
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCcEEecC-------CC
Confidence 357889999999999999999999999986 7999999999999999 99999999999999999986 68
Q ss_pred eeeCCCCCcccccccc---ccchHHHHHHhhccchh-hhhHhHHHhhcCCCCChhhHHHH---------------HHHHH
Q 040620 98 SILLPPHLDFFSRISL---QLQGSTILLLIADATFT-TSFHFLSTWLQNDDQTLFGTADG---------------IFYEA 158 (214)
Q Consensus 98 ~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~-~~~~~l~~~lr~~~~~~f~~~~g---------------~f~~a 158 (214)
+|.+|+. ++.|. +.++..++.++.....+ ..|.++.++++++. ++|...+| .|.++
T Consensus 75 ~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 149 (332)
T 3i53_A 75 VYGLTEF----GEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTL 149 (332)
T ss_dssp BEEECTT----GGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred eEEcCHh----HHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHH
Confidence 9999999 99987 35688887665444455 78999999999886 34544332 67888
Q ss_pred hhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 159 MITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 159 m~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
|...+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 150 m~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 202 (332)
T 3i53_A 150 MSHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQ 202 (332)
T ss_dssp HHHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HHHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCH
Confidence 88777666666777777 667789999999999999999999999999999985
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.95 E-value=6.5e-28 Score=211.36 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=155.7
Q ss_pred chhhhhHHHHHH--HHHHHHhHHHHHHHHHhcCcchhhhcCCCC---CCHHHHHHHcCC---CCCCcccHHHHHHHHHhC
Q 040620 10 AREHFQAQAQVW--SYTYNYMKSLSLKRAIQLRIPDIINNSGQP---MTLTQIIVALNV---HPNKTRCTQILVCLLAHS 81 (214)
Q Consensus 10 ~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~~~p---~t~~eLA~~~g~---~~~~~~~l~rlLr~L~~~ 81 (214)
.++..+++..++ +++.+++.+.+|++++++|||++|++.|+| +|++|||+++|+ +|.+++.++||||+|++.
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 345778888999 999999999999999999999999975226 999999999999 432238999999999999
Q ss_pred CceeeecCC-CCCCccceeeCCCCCcccccccc-c---cchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH---
Q 040620 82 GFFVQQKDG-KNEQEEESILLPPHLDFFSRISL-Q---LQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG--- 153 (214)
Q Consensus 82 g~l~~~~~~-~~~~~~~~y~~t~~~~~~s~~l~-~---~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g--- 153 (214)
|+|++...+ .++..+++|++|+. ++.|+ + .++++++.++.++.++..|.+|+++++++..++|...+|
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~----s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~ 171 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMV----GKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTK 171 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTT----GGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC------------
T ss_pred CceEecccccCCCCcCCeEecCHH----HHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCH
Confidence 999987200 00000159999999 99887 2 368888877766667889999999999883366655433
Q ss_pred ------------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 ------------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 ------------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|...+......+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 172 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~ 242 (372)
T 1fp1_D 172 YEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP 242 (372)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChH
Confidence 6889998887777778888885 3667789999999999999999999999999999985
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.95 E-value=8.5e-28 Score=210.22 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=145.9
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 9 GAREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 9 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.+.++.+++..+++++.|++.+++|++++++||||+|+++++|+|++|||+++|+++ +.++||||+|++.|+|+++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~---~~l~rlLr~l~~~g~l~~~- 83 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTR---YAAQVLLEASLTIGTILLE- 83 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCH---HHHHHHHHHHhhCCCeEec-
Confidence 345688899999999999999999999999999999998558999999999999999 9999999999999999886
Q ss_pred CCCCCCccceeeCCCCCcccccccc-ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH--------------
Q 040620 89 DGKNEQEEESILLPPHLDFFSRISL-QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG-------------- 153 (214)
Q Consensus 89 ~~~~~~~~~~y~~t~~~~~~s~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g-------------- 153 (214)
+++|++|+. ++.|+ +.....++. +.....+..|.+|++++|++++ ++...+|
T Consensus 84 -------~~~y~~t~~----s~~L~~~~~~~~~~~-~~~~~~~~~~~~L~~~lr~g~~-~~~~~~g~~~~~~~~~~~~~~ 150 (363)
T 3dp7_A 84 -------EDRYVLAKA----GWFLLNDKMARVNME-FNHDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPE 150 (363)
T ss_dssp -------TTEEEECHH----HHHHHHCHHHHHHHH-HHHHTTHHHHTTHHHHHHHSSC-GGGGGTCCCSSHHHHGGGSCH
T ss_pred -------CCEEecccc----hHHhhCCCcccchhe-eecHHhhhhHHHHHHHHhcCCC-ccccccCchHhHHHHHhhCHH
Confidence 489999999 98887 333333333 3344678999999999998863 3333322
Q ss_pred -------HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 -------IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 -------~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|+++|..... ..++..+. ..+.++|||||||+|.++..+++++|+++++++|+|
T Consensus 151 ~~~~~~~~f~~~~~~~~~---~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 212 (363)
T 3dp7_A 151 QVQKSWFGFDHFYSDQSF---GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP 212 (363)
T ss_dssp HHHHHHHHHHHHTTCCCC---HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECH
T ss_pred HHHHHHHHHHHHhhhhhH---HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCH
Confidence 14444443321 12334333 256789999999999999999999999999999986
No 12
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.94 E-value=1.2e-26 Score=201.13 Aligned_cols=181 Identities=13% Similarity=0.163 Sum_probs=149.4
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecC
Q 040620 10 AREHFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKD 89 (214)
Q Consensus 10 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 89 (214)
|....+....+++++.+++.+.+|++++++|||++|+ +|+|++|||+++|+++ +.++||||+|++.|+|+++
T Consensus 18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~---~~l~rlLr~L~~~gll~~~-- 89 (352)
T 3mcz_A 18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVE---GKAAILLHALAALGLLTKE-- 89 (352)
T ss_dssp SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcCh---HHHHHHHHHHHHCCCeEec--
Confidence 3333344445999999999999999999999999997 4999999999999999 9999999999999999998
Q ss_pred CCCCCccceeeCCCCCcccccccc----ccchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhHHHH---------HHH
Q 040620 90 GKNEQEEESILLPPHLDFFSRISL----QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGTADG---------IFY 156 (214)
Q Consensus 90 ~~~~~~~~~y~~t~~~~~~s~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~~~g---------~f~ 156 (214)
+++|.+|+. ++.++ +.+++.++.+. ...+..|.+++++++++.+.+|..... .|.
T Consensus 90 ------~~~y~~t~~----s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~ 157 (352)
T 3mcz_A 90 ------GDAFRNTAL----TERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFN 157 (352)
T ss_dssp ------TTEEEECHH----HHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHH
T ss_pred ------CCeeecCHH----HHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHH
Confidence 478999999 87654 35577776543 246788999999999997665433211 788
Q ss_pred HHhhhhhhhhHHHHHhhcccccCC-CCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 157 EAMITDFELIASVLIEDCNEVSKG-LKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 157 ~am~~~~~~~~~~~l~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
++|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|+|
T Consensus 158 ~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 212 (352)
T 3mcz_A 158 DAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP 212 (352)
T ss_dssp HHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECG
T ss_pred HHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECH
Confidence 899873322 246788888 555 899999999999999999999999999999986
No 13
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.94 E-value=9.8e-27 Score=202.72 Aligned_cols=185 Identities=16% Similarity=0.266 Sum_probs=158.0
Q ss_pred CCchhhhhHHHHHHHHHH-HHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 040620 8 NGAREHFQAQAQVWSYTY-NYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ 86 (214)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 86 (214)
+.+.++.+++.++++++. +++.+.+|++++++|||++|++ +|+|++|||+++|+++ +.++||||+|++.|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~---~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVP---PRLEMLLETLRQMRVINL 96 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcCh---HHHHHHHHHHHhCCCeEe
Confidence 456678889999999986 8999999999999999999996 8999999999999999 999999999999999999
Q ss_pred ecCCCCCCccceeeCCCCCcccccccc---c---cchHHHHHHhhccchhhhhHhHHHhhcCCCCChhhH---------H
Q 040620 87 QKDGKNEQEEESILLPPHLDFFSRISL---Q---LQGSTILLLIADATFTTSFHFLSTWLQNDDQTLFGT---------A 151 (214)
Q Consensus 87 ~~~~~~~~~~~~y~~t~~~~~~s~~l~---~---~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~f~~---------~ 151 (214)
++ ++|++|+.. +..+. + .++++++.++ ....+..|.+|+++++++.+ |+. .
T Consensus 97 ~~--------~~y~~t~~~---~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~--~~~~~~~p~~~~~ 162 (359)
T 1x19_A 97 ED--------GKWSLTEFA---DYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN--FKGQVPYPPVTRE 162 (359)
T ss_dssp ET--------TEEEECHHH---HHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC--CCCSSCSSCCSHH
T ss_pred eC--------CeEecCHHH---HHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--CcccccCchhhHH
Confidence 84 699999961 44555 3 4678877665 34578899999999998764 221 1
Q ss_pred HHHHHHHhhhhhh-hhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 152 DGIFYEAMITDFE-LIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 152 ~g~f~~am~~~~~-~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
...|.++|..... ...+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|
T Consensus 163 ~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 223 (359)
T 1x19_A 163 DNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 223 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECG
T ss_pred HHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecH
Confidence 2278999998887 77778888888 777899999999999999999999999999999985
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.93 E-value=5.4e-26 Score=198.48 Aligned_cols=182 Identities=20% Similarity=0.202 Sum_probs=152.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCC
Q 040620 13 HFQAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKN 92 (214)
Q Consensus 13 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 92 (214)
..+....+++++.+++.+.+|++++++|||++|.+ +|+|++|||+++|+++ +.++||||+|++.|+|.+..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~---~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHP---QALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCH---HHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHhhCCCEEEeC----
Confidence 34566789999999999999999999999999975 8999999999999999 99999999999999999865
Q ss_pred CCccc--eeeCCCCCcccccccc---ccchHHHHHHhhccchh-hhhHhHHHhhcCCCCChhhHHHH-------------
Q 040620 93 EQEEE--SILLPPHLDFFSRISL---QLQGSTILLLIADATFT-TSFHFLSTWLQNDDQTLFGTADG------------- 153 (214)
Q Consensus 93 ~~~~~--~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~~~-~~~~~l~~~lr~~~~~~f~~~~g------------- 153 (214)
++ .|++|+. ++.|. +.++..++.+...+..+ ..|.++.+.++++. .+|...+|
T Consensus 84 ---~~~~~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~ 155 (374)
T 1qzz_A 84 ---KQGRPLRPTRL----GMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVAL 155 (374)
T ss_dssp ---C-CCCCEECTT----GGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHH
T ss_pred ---CCCeEEEEChH----HHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHH
Confidence 46 9999999 98887 34777877665444456 88999999999876 33443332
Q ss_pred --HHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 154 --IFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 154 --~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.|.++|........+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~ 215 (374)
T 1qzz_A 156 ADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA 215 (374)
T ss_dssp HHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred HHHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCH
Confidence 6777787666655677888877 667889999999999999999999999999999973
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.93 E-value=4.4e-26 Score=195.95 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccc
Q 040620 18 AQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEE 97 (214)
Q Consensus 18 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~ 97 (214)
..+++++.+++.+.+|++++++|||++|++ +|+|++|||+++|+++ +.++||||+|++.|+|++. ++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~---~~l~r~L~~L~~~g~l~~~--------~~ 74 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSE---RGMRMLCDYLVIIGFMTKQ--------AE 74 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEE--------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCc---hHHHHHHHHHHhcCCeEec--------CC
Confidence 578899999999999999999999999996 8999999999999999 9999999999999999885 58
Q ss_pred eeeCCCCCcccc-cccc---ccchHHHHHHhhccchhhhhHhHHHhhcCCCCCh--hhHHH------HHHHHHhhhhhhh
Q 040620 98 SILLPPHLDFFS-RISL---QLQGSTILLLIADATFTTSFHFLSTWLQNDDQTL--FGTAD------GIFYEAMITDFEL 165 (214)
Q Consensus 98 ~y~~t~~~~~~s-~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~lr~~~~~~--f~~~~------g~f~~am~~~~~~ 165 (214)
+|++|+. + +.+. +.++..++.++.++..+..|.++.++++++.+.. |+... ..|.++|......
T Consensus 75 ~y~~t~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (335)
T 2r3s_A 75 GYRLTSD----SAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMAN 150 (335)
T ss_dssp EEEECHH----HHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHH
T ss_pred EEecCHH----HHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 9999999 8 5665 3457777777655467889999999999876321 22211 1788899888777
Q ss_pred hHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 166 IASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
....+++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 198 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA 198 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH
Confidence 777788888732267889999999999999999999999999999974
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.93 E-value=2e-25 Score=194.03 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCc
Q 040620 16 AQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQE 95 (214)
Q Consensus 16 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~ 95 (214)
...++++++.+++.+.+|++++++|||++|.+ +|+|++|||+++|+++ +.++|+||+|++.|+|.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~---~~l~r~L~~L~~~g~~~~~~------- 86 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRP---EALLRLIRHLVAIGLLEEDA------- 86 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE-------
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHHCCCEEecC-------
Confidence 35678899999999999999999999999975 8999999999999999 99999999999999999976
Q ss_pred cceeeCCCCCcccccccc---ccchHHHHHHhhccc-hhhhhHhHHHhhcCCCCChhhHHHH---------------HHH
Q 040620 96 EESILLPPHLDFFSRISL---QLQGSTILLLIADAT-FTTSFHFLSTWLQNDDQTLFGTADG---------------IFY 156 (214)
Q Consensus 96 ~~~y~~t~~~~~~s~~l~---~~~~~~~~~~~~~~~-~~~~~~~l~~~lr~~~~~~f~~~~g---------------~f~ 156 (214)
+++|.+|+. ++.|. +.++..++.+...+. .+..|.++.+.++++.+ +|...+| .|.
T Consensus 87 ~g~y~~t~~----s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~-~~~~~~g~~~~~~~~~~p~~~~~f~ 161 (360)
T 1tw3_A 87 PGEFVPTEV----GELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFD 161 (360)
T ss_dssp TTEEEECTT----GGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCC-CHHHHHSSCHHHHHHTCHHHHHHHH
T ss_pred CCeEEeCHH----HHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCC-HHHHhcCCCHHHHHHhChHHHHHHH
Confidence 689999999 99887 347777765554333 57889999999998763 3332222 677
Q ss_pred HHhhhhhhhhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 157 EAMITDFELIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 157 ~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
++|........+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|
T Consensus 162 ~~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~ 216 (360)
T 1tw3_A 162 SLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA 216 (360)
T ss_dssp HHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT
T ss_pred HHHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCH
Confidence 8887776666677888887 667789999999999999999999999999999985
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.62 E-value=2.6e-08 Score=86.89 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=88.2
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc-c---c
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL-Q---L 115 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~-~---~ 115 (214)
++|..| . +|.|++|||+++|+++ +.+++||+.|++.|+++.. ++ |++|+. +..++ . .
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~---~~v~~~L~~l~~~gll~~~--------~~-~~lt~~----~~~~l~~~~~~ 107 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPL---PLVVAILESLNELGYVTFE--------DG-VKLTEK----GEELVAEYGIG 107 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEECS--------SS-SEECHH----HHHHHHHHTCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCCh---HHHHHHHHHHhhCCcEEEC--------CC-EEECHH----HHHHHHhcCcc
Confidence 678888 4 7999999999999999 9999999999999999875 34 999998 55543 1 1
Q ss_pred chHHHH-HHhh-----ccchhhhhHhHHHhhcCCCCChhhHHHHHHHHHhhhhhhhhHHHHHhhcccccCCCCcEEeecC
Q 040620 116 QGSTIL-LLIA-----DATFTTSFHFLSTWLQNDDQTLFGTADGIFYEAMITDFELIASVLIEDCNEVSKGLKPLVDVGG 189 (214)
Q Consensus 116 ~~~~~~-~~~~-----~~~~~~~~~~l~~~lr~~~~~~f~~~~g~f~~am~~~~~~~~~~~l~~~~~~~~~~~~vvDVGG 189 (214)
.....+ .... ...+...|..+.+.++... .+... |.+..... ......++...........+|+|||
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~VLDlG- 180 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRP-EPLHE----FDQAYVTP-ETTVARVILMHTRGDLENKDIFVLG- 180 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCC-CCCGG----GTCCCBCH-HHHHHHHHHHHHTTCSTTCEEEEES-
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCC-ccchh----cCCeecCH-HHHHHHHHHHhhcCCCCCCEEEEEC-
Confidence 100000 0000 0011123444555555332 11100 11100000 0011111111110122457999999
Q ss_pred CchHHHHHHHHHCCCCeEEEecC
Q 040620 190 STGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 190 G~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
|+|.+++.+++..|+.+++++|+
T Consensus 181 G~G~~~~~la~~~~~~~v~~vDi 203 (373)
T 2qm3_A 181 DDDLTSIALMLSGLPKRIAVLDI 203 (373)
T ss_dssp CTTCHHHHHHHHTCCSEEEEECS
T ss_pred CCCHHHHHHHHhCCCCEEEEEEC
Confidence 99999999999999999999997
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.59 E-value=2e-05 Score=51.89 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=46.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLP 102 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t 102 (214)
+..|+++|..++.|+|..|||+.+|++. ..+.+.+..|...|++.... .+.|.++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr---~tv~~~l~~L~~~G~I~~~~-------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPK---KTLNQVLYRLKKEDRVSSPS-------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCH---HHHHHHHHHHHHTTSEEEEE-------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEecCC-------CceEeeC
Confidence 4457788876546899999999999999 99999999999999987755 5788764
No 19
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=97.49 E-value=8.2e-05 Score=59.04 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.....+|||||||+|.++..+++.+|+.+++.+|+-
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s 60 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDAD 60 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECC
Confidence 345679999999999999999999999999999973
No 20
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=97.44 E-value=0.0002 Score=56.24 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=35.8
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.++...+ .....+|||||||+|.++..+++..|..+++.+|+
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~ 72 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALER 72 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeC
Confidence 3455554 55678999999999999999999999999999996
No 21
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.43 E-value=0.00013 Score=58.28 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++.+|+.+++.+|+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~ 70 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIEL 70 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECS
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEe
Confidence 356899999999999999999999999999996
No 22
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.40 E-value=0.00014 Score=60.77 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=35.1
Q ss_pred HhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 171 IEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 171 l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+...+...++|||||||+|.++..+++++|..+++.+|+
T Consensus 37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDi 78 (292)
T 3g07_A 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDI 78 (292)
T ss_dssp GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEES
T ss_pred HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECC
Confidence 344443344578999999999999999999999999999997
No 23
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.37 E-value=0.00018 Score=56.16 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|+|||+|.++..+++.+|+.+++.+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 62 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDL 62 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEEC
Confidence 4578999999999999999999999999999997
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.37 E-value=0.00033 Score=48.88 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 31 LSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 31 ~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++..-.++.|+..| . +++|+.|||+.+++++ ..+++.|+.|...|++.... +.|.+++.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~---~tv~~~L~~L~~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSK---KQLDYHLKVLEAGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET--------TEEEECTT
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEC--------CEEEECCC
Confidence 344445566788888 5 8899999999999999 99999999999999999874 58999988
No 25
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.37 E-value=0.00016 Score=58.10 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++.+|+.+++.+|+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~ 66 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEV 66 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECS
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEe
Confidence 457999999999999999999999999999986
No 26
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.37 E-value=0.00018 Score=57.11 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++.+|+.+++.+|+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~ 73 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDI 73 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEc
Confidence 357899999999999999999999999999996
No 27
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=97.32 E-value=0.00055 Score=54.62 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=35.0
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.++...+ ...+..+|||||||+|.++..+++.+|+.+++++|+
T Consensus 34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 76 (234)
T 3dtn_A 34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDM 76 (234)
T ss_dssp HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEEC
Confidence 3444443 234568999999999999999999999999999997
No 28
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=97.30 E-value=0.00021 Score=56.55 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..++++.|..+++.+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 61 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDV 61 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEES
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEEC
Confidence 3467999999999999999999999999999996
No 29
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.30 E-value=0.00011 Score=61.33 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=51.5
Q ss_pred HHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 31 LSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 31 ~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++.-+ +.|+++|...++++|+.|||+++|+++ ..+.|+|+.|+..|++.+++ +++|.+++.
T Consensus 27 ~sl~Ra--l~IL~~l~~~~~~ltl~eia~~lgl~k---sTv~RlL~tL~~~G~v~~~~-------~~~Y~LG~~ 88 (275)
T 3mq0_A 27 PALRRA--VRILDLVAGSPRDLTAAELTRFLDLPK---SSAHGLLAVMTELDLLARSA-------DGTLRIGPH 88 (275)
T ss_dssp HHHHHH--HHHHHHHHHCSSCEEHHHHHHHHTCC-----CHHHHHHHHHHTTSEEECT-------TSEEEECTH
T ss_pred hHHHHH--HHHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEECC-------CCcEEehHH
Confidence 344444 467888887657899999999999999 99999999999999999986 579999988
No 30
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=97.26 E-value=0.0003 Score=56.90 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ .....+|||||||+|.++..+++++|..+++++|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~ 65 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDS 65 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEEC
Confidence 34566555 45678999999999999999999999999999996
No 31
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=97.26 E-value=0.00024 Score=56.26 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..++++.|..+++.+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 61 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV 61 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEES
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEEC
Confidence 3467999999999999999999999999999997
No 32
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=59.14 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||.|.++..+++.+|+.+++++|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDi 78 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEI 78 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEES
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEEC
Confidence 456899999999999999999999999999986
No 33
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=97.24 E-value=0.00045 Score=56.51 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.+++.++ ..+..+|||||||.|.++..+++++ |+.+++++|+
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~ 76 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDI 76 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECS
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence 3445444 5567899999999999999999996 8899999997
No 34
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.21 E-value=0.00028 Score=57.36 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++.+|+.+++.+|+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~ 81 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEI 81 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEES
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEc
Confidence 3567999999999999999999999999999996
No 35
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=97.17 E-value=0.00051 Score=57.32 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=35.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+..+|||||||+|.++..+++++| .+++++|+
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~ 103 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTL 103 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEEC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEEC
Confidence 44555554 55678999999999999999999988 88999986
No 36
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.13 E-value=0.0003 Score=57.68 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|||||+|..++.++..+|+.+++.+|.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~ 112 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDA 112 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEES
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEEC
Confidence 4567999999999999999999999999999996
No 37
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=97.12 E-value=0.00059 Score=55.90 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|||||||+|.++..+++.+|+.+++.+|+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 69 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEEC
Confidence 45678999999999999999999999999999996
No 38
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.11 E-value=0.00033 Score=54.85 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|||||+|.++..+++.+|+.+++++|.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~ 97 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDS 97 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeC
Confidence 357999999999999999999999999999996
No 39
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.10 E-value=0.00034 Score=55.19 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
..+++.++ .....+|||||||+|.++..+++.. |+.+++++|.
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~ 70 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDV 70 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEEC
Confidence 44555555 5567899999999999999999997 8899999996
No 40
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=97.09 E-value=0.00044 Score=57.19 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHC--CCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAF--PDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++++ |+.+++.+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~ 104 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN 104 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEEC
Confidence 456799999999999999999985 6789999996
No 41
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.08 E-value=0.00096 Score=54.44 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|||||||.|.++..+++++ ..+++++|+
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~ 92 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISI 92 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeC
Confidence 44556555 5567899999999999999999987 678999886
No 42
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.04 E-value=0.00065 Score=54.49 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=31.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+..+|||||||+|.++..+++.+|+.+++.+|.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~ 106 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEY 106 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEES
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEEC
Confidence 45667999999999999999999999888999886
No 43
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=97.03 E-value=0.00017 Score=59.73 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=50.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|+++|...++++|+.|||+++|+++ ..+.|+|+.|...|++.+++. .++|++++.
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~k---sT~~RlL~tL~~~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNK---ATVYRLMSELQEAGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCH---HHHHHHHHHHHHTTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEcCC------CCcEEcCHH
Confidence 457788876447899999999999999 999999999999999999863 489999998
No 44
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0012 Score=54.93 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++++ |..+++++|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 69 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDL 69 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeC
Confidence 357899999999999999999997 9999999997
No 45
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=97.02 E-value=0.00086 Score=58.38 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+++.++ .....+|+|+|||+|.+++.+++++|..+++.+|.
T Consensus 214 ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~ 254 (375)
T 4dcm_A 214 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDE 254 (375)
T ss_dssp HHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEES
T ss_pred HHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEEC
Confidence 455555 33347999999999999999999999999999996
No 46
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=97.02 E-value=0.00048 Score=53.91 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+. +|||||||+|.++..++++ |+.+++++|+
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~ 74 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDF 74 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEES
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEEC
Confidence 44445444 3333 9999999999999999999 8999999986
No 47
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.02 E-value=0.00093 Score=53.91 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ ..+..+|||||||+|.++..+++.+ +.+++++|+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~ 67 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDM 67 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeC
Confidence 44555554 5567899999999999999999998 678898886
No 48
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.00 E-value=0.0012 Score=54.57 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|||||+|..+..+++.+|+.+++.+|.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~ 141 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDR 141 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECS
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEEC
Confidence 457999999999999999999999999999986
No 49
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=96.99 E-value=0.00069 Score=54.79 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~ 86 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDI 86 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeC
Confidence 44555554 5567899999999999999999988 789999986
No 50
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=96.99 E-value=0.0011 Score=53.60 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecCC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFACH 213 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp 213 (214)
.++...+ .....+|||+|||+|.++..+++. .|..+++.+|+-
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~ 127 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIR 127 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecC
Confidence 3445554 556789999999999999999999 899999999973
No 51
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=96.98 E-value=0.0017 Score=52.11 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=28.2
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|||||||.|.++..+++. +.+++++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~ 71 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDI 71 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEEC
Confidence 445689999999999999999998 557888886
No 52
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=96.97 E-value=0.00044 Score=55.86 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|||||+|..+..+++..|+.+++.+|.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~ 102 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDS 102 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeC
Confidence 4568999999999999999999999999999996
No 53
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=96.94 E-value=0.0012 Score=53.33 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=33.1
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
++..+. ...+..+|||||||+|.++..+++.+|. +++++|+
T Consensus 37 ~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~ 77 (257)
T 3f4k_A 37 AVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDL 77 (257)
T ss_dssp HHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEES
T ss_pred HHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEEC
Confidence 344442 2455679999999999999999999986 8999886
No 54
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=96.93 E-value=0.0019 Score=50.47 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=28.6
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|||||||+|.++..++++ ..+++++|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~ 76 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDG 76 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeC
Confidence 345579999999999999999999 668999886
No 55
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=96.93 E-value=0.00089 Score=53.34 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=30.9
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+..+|||||||+|.++..+++..|+.+++.+|+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~ 89 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEY 89 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEEC
Confidence 44567999999999999999999998778999886
No 56
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=96.92 E-value=0.00085 Score=54.78 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
..+++.++ ..+..+|||||||+|.++..+++ |+.+++++|+-
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s 65 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPS 65 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSC
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCC
Confidence 44455554 45678999999999999999997 78899999973
No 57
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.92 E-value=0.0008 Score=56.24 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=29.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|+|||||+|.+++.+++. |+.+++.+|+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDi 154 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDV 154 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEES
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEEC
Confidence 4569999999999999999999 9999999996
No 58
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=96.91 E-value=0.0012 Score=54.42 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ ..+..+|||||||.|.++..++++++. +++++|+
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~ 95 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTL 95 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEES
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEEC
Confidence 34555554 556779999999999999999987764 8999886
No 59
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.91 E-value=0.00033 Score=57.29 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=49.1
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|++.|...++++|+.|||+++|+++ ..+.|+|+.|...|++.+++. +++|.+++.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~---stv~r~l~~L~~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPR---STVQRIINALEEEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCH---HHHHHHHHHHHTTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEeCC------CCeEEECHH
Confidence 346677776545899999999999999 999999999999999998762 489999987
No 60
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=96.90 E-value=0.0014 Score=53.36 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.+..+|||||||+|..+..+++.+| +.+++.+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 96 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEA 96 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEEC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEEC
Confidence 3578999999999999999999999 889999997
No 61
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.89 E-value=0.0011 Score=50.16 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+++.++ ..+..+|+|||||+|.++..+++ |..+++.+|.
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~ 65 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDY 65 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEEC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeC
Confidence 3444444 44567999999999999999998 8889999986
No 62
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=96.88 E-value=0.00075 Score=55.92 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHhhccc--ccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 168 SVLIEDCNE--VSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 168 ~~~l~~~~~--~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
..+++.++| ......+|||||||.|.++..+++++ +.+++++|+-
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s 114 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIA 114 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESC
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCC
Confidence 445555511 25567899999999999999999987 4589998873
No 63
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=96.88 E-value=0.0011 Score=58.96 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|||||||+|.++..+++.+|..+++++|+
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDi 274 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEI 274 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeC
Confidence 33445444 55678999999999999999999999889999986
No 64
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=96.87 E-value=0.00067 Score=55.11 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++.++ .....+|||||||+|.++..++++.+ +++++|+
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~ 67 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDL 67 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEES
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeC
Confidence 345556555 45678999999999999999999986 8888886
No 65
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=96.87 E-value=0.0012 Score=54.45 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=32.9
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
.++...+ ..+..+|||+|||+|.++..+++. +|..+++.+|+
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~ 143 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER 143 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECS
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEEC
Confidence 3444444 556789999999999999999998 89999999997
No 66
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.86 E-value=0.00014 Score=52.76 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=52.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVAL--NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~--g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+..|+..|..+ +++|+.+||+.+ ++++ ..+++-|+.|...|++...+ .+.|.+|+. ++.++
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~---~aVs~rL~~Le~~GLV~~~~-------rg~Y~LT~~----G~~~l 77 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISK---SSVSRRLKKLADHDLLQPLA-------NGVYVITEE----GEAYL 77 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCH---HHHHHHHHHHHHTTSEEECS-------TTCEEECHH----HHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCH---HHHHHHHHHHHHCCCEEecC-------CceEEECch----HHHHH
Confidence 34577788766 899999999999 9999 99999999999999999876 468999999 76665
No 67
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=96.85 E-value=0.00085 Score=57.40 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ .....+|+|||||+|.++..+++++|+.+++.+|.
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~ 228 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDV 228 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEES
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEEC
Confidence 44555554 22356999999999999999999999999999996
No 68
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=96.85 E-value=0.00054 Score=55.09 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+..+|||||||+|.++..+++..| .+++++|.
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~ 122 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIER 122 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeC
Confidence 34445444 45677999999999999999999998 88999885
No 69
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=96.84 E-value=0.0011 Score=54.05 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=33.7
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
++..++ ...+..+|||||||+|.++..+++. |..+++++|+
T Consensus 37 ~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~ 77 (267)
T 3kkz_A 37 ALSFID-NLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDF 77 (267)
T ss_dssp HHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEES
T ss_pred HHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeC
Confidence 344443 3456789999999999999999998 8899999997
No 70
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.84 E-value=0.0023 Score=47.18 Aligned_cols=49 Identities=6% Similarity=0.105 Sum_probs=39.2
Q ss_pred HHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 36 AIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 36 a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+..|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCRDK---ALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEeecc
Confidence 4455677888876 7999999999999999 99999999999999999765
No 71
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.81 E-value=0.00082 Score=53.09 Aligned_cols=31 Identities=6% Similarity=-0.040 Sum_probs=27.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..++++.| +++++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~ 68 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDI 68 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEEC
Confidence 367999999999999999999988 8888886
No 72
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=96.79 E-value=0.0022 Score=53.74 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=35.3
Q ss_pred hhHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 165 LIASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+++.++ ......+|||||||.|.++..+++++ ..+++++|+
T Consensus 103 ~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~ 148 (312)
T 3vc1_A 103 AQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTL 148 (312)
T ss_dssp HHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEES
T ss_pred HHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeC
Confidence 33344555553 24567899999999999999999986 678999986
No 73
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=96.77 E-value=0.0017 Score=54.34 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ ..+..+|||||||.|.++..+++++ +.+++++|+
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~ 121 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTL 121 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEES
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEEC
Confidence 44555554 5567799999999999999999987 568999886
No 74
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=96.77 E-value=0.00091 Score=53.24 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|+|||.|.++..++...|+.+++..|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di 81 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDI 81 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECS
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeC
Confidence 4578999999999999999999999999999986
No 75
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.76 E-value=0.00062 Score=45.93 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=46.8
Q ss_pred hcCcchhhhcCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCC
Q 040620 38 QLRIPDIINNSGQ---PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPP 103 (214)
Q Consensus 38 ~lglfd~L~~~~~---p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~ 103 (214)
+..|+++|..+ + ++|+.|||+++|++. ..+++.|..|...|++...+.. .+.|..++
T Consensus 16 ~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~---~tV~~~L~~L~~~G~I~~~g~~-----~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEEL-GEGKATTAHDLSGKLGTPK---KEINRVLYSLAKKGKLQKEAGT-----PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHH-CSSSCEEHHHHHHHHCCCH---HHHHHHHHHHHHHTSEEEECSS-----SCEEEECC
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEecCCC-----CCceEecC
Confidence 45577778876 4 899999999999999 9999999999999999886521 46776655
No 76
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.76 E-value=0.00063 Score=55.77 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=48.6
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|++.|...++++|+.|||+++|+++ ..+.|+|+.|...|++..+. .++|.+++.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~---stv~r~l~~L~~~G~v~~~~-------~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSV---SNAYKYMVVLEEKGFVLRKK-------DKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEECT-------TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEECC-------CCcEEECHH
Confidence 346677776545899999999999999 99999999999999999883 689999887
No 77
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=96.75 E-value=0.0023 Score=51.64 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=35.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
..++...+ .....+|||+|||+|.++..+++. .|..+++.+|.
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 129 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEA 129 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEES
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeC
Confidence 34555555 556789999999999999999999 78999999986
No 78
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=96.75 E-value=0.0016 Score=52.47 Aligned_cols=40 Identities=18% Similarity=0.017 Sum_probs=32.2
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+.++ .....+|||||||+|.++..+++..+. +++++|+
T Consensus 36 l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~ 75 (253)
T 3g5l_A 36 LKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDL 75 (253)
T ss_dssp HHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEES
T ss_pred HHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEEC
Confidence 444444 345789999999999999999999775 8888886
No 79
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=96.74 E-value=0.0018 Score=50.85 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.+++... .....+|||||||+|.++..+++.. |+.+++.+|.
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 110 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIER 110 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEES
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeC
Confidence 3444444 4556799999999999999999998 7789999886
No 80
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.74 E-value=0.0013 Score=54.12 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=31.6
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|||+|||+|.+++.+++++|+.+++.+|+
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi 68 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYER 68 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEES
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEEC
Confidence 34467999999999999999999999999999986
No 81
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.73 E-value=0.00096 Score=53.48 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=31.2
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.....+|||||||+|.++..+++++ |+.+++.+|+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~ 110 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEEC
Confidence 4456799999999999999999997 7889999986
No 82
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.73 E-value=0.00085 Score=45.79 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=47.2
Q ss_pred HhcCcchhhhcCCC---CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQ---PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~---p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.+..|.++|.++ + ++|+.|||+++|++. +.+++.|..|...|+++..+.. .+.|...+.
T Consensus 11 ~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr---~tV~~~L~~Le~~G~I~~~g~~-----~~~W~i~~~ 72 (81)
T 1qbj_A 11 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPK---KEINRVLYSLAKKGKLQKEAGT-----PPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEESSS-----SCEEEEC--
T ss_pred HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEecCCC-----CCeeEEeCc
Confidence 455577778776 5 799999999999999 9999999999999999876421 467887776
No 83
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.73 E-value=0.00079 Score=54.63 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..+++++|+.+++.+|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~ 97 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEV 97 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEES
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEEC
Confidence 467999999999999999999999999999996
No 84
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.71 E-value=0.0019 Score=49.12 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=29.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|+|||+|.++..++++ |..+++.+|+
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~ 62 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEK 62 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEEC
Confidence 35679999999999999999987 7788999986
No 85
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=96.71 E-value=0.0015 Score=52.23 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||.|..+..+++.+|+.+++.+|+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~ 86 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIER 86 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECC
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEEC
Confidence 467999999999999999999999999999986
No 86
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=96.70 E-value=0.0011 Score=53.40 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||.|..+..+++.+|..+++.+|+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~ 103 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIER 103 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEEC
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEEC
Confidence 3568999999999999999999999999999996
No 87
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=96.69 E-value=0.0025 Score=52.86 Aligned_cols=41 Identities=20% Similarity=0.037 Sum_probs=33.1
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|||||||+|.++..++++ ..+++.+|+
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~ 75 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDF 75 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEES
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEEC
Confidence 45556555 556789999999999999999987 568888886
No 88
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=96.69 E-value=0.0019 Score=54.57 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ .....++||+|||.|.++..+++++|+.+++.+|+
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~ 58 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDV 58 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEEC
Confidence 33445444 44567999999999999999999999999999996
No 89
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=96.67 E-value=0.0026 Score=52.34 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
..++...+ .....+|||+|||+|.++..++++ .|..+++.+|.
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~ 145 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEK 145 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEEC
Confidence 34455555 556779999999999999999999 78999999986
No 90
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=96.64 E-value=0.0023 Score=56.62 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|+|||||.|..++.++..+|..+++++|+
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDi 205 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEK 205 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEEC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeC
Confidence 44555554 55678999999999999999999998778999987
No 91
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.64 E-value=0.00083 Score=55.32 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=48.1
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|++.|...++++|+.|||+++|+++ ..+.|+|+.|...|++.++ +++|++++.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~~L~~~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSR---PAVRRILLTLQKLGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEeC--------CCEEEEcHH
Confidence 356677775447899999999999999 9999999999999999987 479999987
No 92
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.64 E-value=0.0024 Score=50.38 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
++...+ .....+|+|||||+|.++..+++. ..+++.+|+
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~ 85 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEP 85 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEES
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeC
Confidence 344444 455689999999999999999998 788999986
No 93
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=96.64 E-value=0.0013 Score=52.12 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.+..+|||||||+|..+..+++++| +.+++.+|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 91 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEA 91 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEES
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEEC
Confidence 3568999999999999999999999 789999986
No 94
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.63 E-value=0.0017 Score=48.78 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=27.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|+|+|||+|.++..++++.|+ ++.+|+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~ 71 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEK 71 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeC
Confidence 4679999999999999999999876 888886
No 95
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=96.63 E-value=0.0032 Score=52.24 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCCcEEeecCCc---hHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGST---GTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||. |.++..+.+.+|+.+++.+|+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~ 112 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDI 112 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEEC
Confidence 468999999999 999988889999999999997
No 96
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.62 E-value=0.0021 Score=52.87 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+++.++ .....+|||||||+|.++..+++ |..+++++|+
T Consensus 49 l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~ 87 (279)
T 3ccf_A 49 LLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDN 87 (279)
T ss_dssp HHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEES
T ss_pred HHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEEC
Confidence 444444 44567999999999999999999 8889999986
No 97
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.62 E-value=0.00064 Score=56.14 Aligned_cols=56 Identities=11% Similarity=0.243 Sum_probs=47.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|++.|...++++|+.|||+++|+++ ..+.|+|+.|...|++.+++ .++|.+++.
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~k---stv~r~l~tL~~~G~v~~~~-------~~~Y~lg~~ 81 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPK---TTVVRLVATMCARSVLTSRA-------DGSYSLGPE 81 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEECT-------TSCEEECHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEECC-------CCeEEecHH
Confidence 456777764337899999999999999 99999999999999999986 348999877
No 98
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.62 E-value=0.0014 Score=51.98 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
+..+|||||||+|..+..+++.+| +.+++.+|.
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 97 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDV 97 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeC
Confidence 467999999999999999999998 889999986
No 99
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.62 E-value=0.0023 Score=44.89 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 36 AIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 36 a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
-.++.|+..|.+ +|+|+.|||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l~is~---~tvs~~L~~L~~~Glv~~~~~---g~-~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE--GEFSVGELEQQIGIGQ---PTLSQQLGVLRESGIVETRRN---IK-QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHHTCCT---THHHHHHHHHHHTTSEEEECS---SS-CCEEEECSS
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEEe---CC-EEEEEECcH
Confidence 344556666755 7899999999999999 999999999999999987652 11 345776665
No 100
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=96.62 E-value=0.0026 Score=51.03 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|||||||+|.++..+++..+ +++.+|.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~ 86 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDV 86 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEES
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEEC
Confidence 34567999999999999999999998 7888886
No 101
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=96.61 E-value=0.0019 Score=52.30 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=29.7
Q ss_pred CCcEEeecCCchHHHHHHHHH----CCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATA----FPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl 212 (214)
..+|||||||+|..+..+++. .|+.+++.+|+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~ 117 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDR 117 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeC
Confidence 579999999999999999998 79999999997
No 102
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=96.59 E-value=0.0016 Score=52.79 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=30.1
Q ss_pred CCCcEEeecCCchHHHHHHHHH--CCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATA--FPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl 212 (214)
...+|+|+|||+|.++..+++. +|..+++.+|+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDi 85 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDV 85 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEES
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEEC
Confidence 4579999999999999999999 88889999997
No 103
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=96.58 E-value=0.0016 Score=55.61 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=29.4
Q ss_pred CcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 182 KPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 182 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+|||||||.|.++..+++.+|+.+++++|+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEi 121 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVEL 121 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEES
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEEC
Confidence 4999999999999999999999999999987
No 104
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.58 E-value=0.00079 Score=45.74 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=47.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTR-CTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~-~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+-.|.++|... +|.|+.+||+.+|+++ . .+++.|..|...|+++..+. + .-.|.+|+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit~---~~aVr~hL~~Le~eGlV~~~~~---g--RP~w~LT~~ 71 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLTK---ARDINAVLIDMERQGDVYRQGT---T--PPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGGG---HHHHHHHHHHHHHTTSEEEECS---S--SCEEEECHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCCc---HHHHHHHHHHHHHCCCEEecCC---C--CCCeEeCHh
Confidence 44566778877 8999999999999998 8 99999999999999986542 1 237888876
No 105
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=96.58 E-value=0.001 Score=53.88 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||.|..+..+++..|. +++++|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~ 91 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIEC 91 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEEC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeC
Confidence 34679999999999999999998885 6888886
No 106
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.56 E-value=0.0029 Score=48.69 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+++.++ ..+..+|||||||+|.++..+++. ..+++.+|.
T Consensus 24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~ 62 (199)
T 2xvm_A 24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDK 62 (199)
T ss_dssp HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEES
T ss_pred HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEEC
Confidence 444444 345679999999999999999988 668898886
No 107
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.56 E-value=0.0037 Score=50.64 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...++.++. ....++|||||||+|.++..+++. +..+++.+|+
T Consensus 26 ~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDi 68 (232)
T 3opn_A 26 EKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDV 68 (232)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECS
T ss_pred HHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcC
Confidence 344555541 224569999999999999999988 4348999986
No 108
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.56 E-value=0.0035 Score=48.90 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++ +|..+++.+|+
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~ 91 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHK-LGAKSVLATDI 91 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEEC
Confidence 567999999999999999776 58889999986
No 109
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.56 E-value=0.0009 Score=45.22 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 49 GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 49 ~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|+|.|+.|||+.+|+++ ..+++-|..|...|++....
T Consensus 22 g~~psv~EIa~~lgvS~---~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSI---YQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEecC
Confidence 68999999999999998 89999999999999999875
No 110
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=96.55 E-value=0.0022 Score=50.42 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||.|.++..++++ +.+++++|.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~ 75 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEP 75 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECS
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeC
Confidence 35679999999999999999998 678998886
No 111
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=96.55 E-value=0.0017 Score=51.14 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=30.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
+..+|||||||.|..+..+++..| +.+++.+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 89 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDP 89 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEES
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEEC
Confidence 467999999999999999999998 889999986
No 112
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.54 E-value=0.0026 Score=48.53 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+..+|+|||||+|.++..+++. ..+++.+|+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~ 82 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADI 82 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEES
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEEC
Confidence 44555555 446789999999999999999998 778888886
No 113
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.54 E-value=0.001 Score=48.57 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 30 SLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 30 ~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
..+|.--.++.|+..|..+ +++|+.|||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~---stvs~~L~~L~~~Glv~~~~~---gr-~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGVTI---ANASHHLRTLYKQGVVNFRKE---GK-LALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEC--------CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEEE---CC-EEEEEECHH
Confidence 3344444566788888754 8999999999999999 999999999999999987641 10 224666655
No 114
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.53 E-value=0.0027 Score=51.88 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=28.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|||||+|.+++.+++..+ +++.+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi 150 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDI 150 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEES
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEEC
Confidence 3567999999999999999999876 8888886
No 115
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.53 E-value=0.00096 Score=47.52 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=46.0
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++.|+..|.. +|+|+.+||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~is~---~tv~~~l~~L~~~gli~~~~~---gr-~~~y~l~~~ 80 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPVSR---QAIAKHLNALQACGLVESVKV---GR-EIRYRALGA 80 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSSCH---HHHHHHHHHHHHTTSEEEEEE---TT-EEEEEECSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeeEEec---CC-EEEEEechH
Confidence 44556677744 7899999999999999 999999999999999987641 00 233777776
No 116
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.52 E-value=0.00097 Score=46.11 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 35 RAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 35 ~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.-.++.|+..|... +++|..|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 23 ~~~~~~il~~l~~~-~~~s~~ela~~l~is~---~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 23 HPKRLLILCMLSGS-PGTSAGELTRITGLSA---SATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp SHHHHHHHHHHTTC-CSEEHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHHHHHHHHhC-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEe
Confidence 34456677777763 6999999999999999 99999999999999998765
No 117
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=96.52 E-value=0.0016 Score=51.26 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=31.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ .+..+|+|||||.|.++..+++. | .+++++|.
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~ 62 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEA 62 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEES
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeC
Confidence 34555443 35679999999999999999998 5 88999886
No 118
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.52 E-value=0.0037 Score=50.87 Aligned_cols=42 Identities=7% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .....+|||||||+|.++..++++. .+++.+|+
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~ 60 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEI 60 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECS
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEEC
Confidence 345556555 4566799999999999999999996 67888875
No 119
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.50 E-value=0.0038 Score=47.62 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=28.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||+|||+|.++..+++ .+..+++.+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~ 75 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEK 75 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEES
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEEC
Confidence 3467999999999999999888 57788999986
No 120
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.50 E-value=0.0028 Score=49.34 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=28.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||+|.++..+++..+. +++++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~ 73 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDY 73 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeC
Confidence 45679999999999999999999775 8888886
No 121
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.48 E-value=0.0014 Score=45.67 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=49.0
Q ss_pred HHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 32 SLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 32 ~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+|.--.++.|+..|.+ +++|+.|||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 19 ~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~---~tvs~~L~~L~~~Glv~~~~~---g~-~~~y~l~~~ 82 (98)
T 3jth_A 19 AMANERRLQILCMLHN--QELSVGELCAKLQLSQ---SALSQHLAWLRRDGLVTTRKE---AQ-TVYYTLKSE 82 (98)
T ss_dssp HHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEECC---TT-CCEEEECCH
T ss_pred HcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEEe---CC-EEEEEECHH
Confidence 3444455667778876 7999999999999999 999999999999999987752 11 234666554
No 122
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=96.48 E-value=0.0035 Score=50.31 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ ..+..+|||||||+|.++..++++. ..+++++|.
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~ 124 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEP 124 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEES
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeC
Confidence 34555554 4567899999999999999999987 556888885
No 123
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=96.46 E-value=0.0028 Score=51.50 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..++++.+ +++++|+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~ 80 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLEL 80 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEES
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEEC
Confidence 3568999999999999999999854 6888886
No 124
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.44 E-value=0.0029 Score=46.06 Aligned_cols=67 Identities=12% Similarity=0.336 Sum_probs=49.2
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~L~~~gli~r~~~~~d~r-~~~~~lT~~----G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGCVP---SNMTTMIQRMKRDGYVMTEKNPNDQR-ETLVYLTKK----GEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSSCC---TTHHHHHHHHHHTTSEEEEECSSCTT-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh---hHHHHHHHHHHHCCCeeeccCCCCCc-eeEEEECHH----HHHHH
Confidence 44466777765 7899999999999999 99999999999999998764211111 223666766 55543
No 125
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=96.44 E-value=0.0047 Score=50.55 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
..++...+ .....+|||||||+|.++..+++. .|..+++.+|+
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 132 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ 132 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeC
Confidence 34555555 556779999999999999999996 68899999986
No 126
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.44 E-value=0.0008 Score=55.71 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=48.1
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+.|++.|...++++|+.|||+++|+++ ..+.|+|+.|...|++.++ +++|.+++.
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~tL~~~G~v~~~--------~~~Y~Lg~~ 78 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTR---ATARRFLLTLVELGYVATD--------GSAFWLTPR 78 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEES--------SSEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEec--------CCEEEEcHH
Confidence 456777775447899999999999999 9999999999999999987 479999987
No 127
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=96.43 E-value=0.0022 Score=50.99 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..++++.| +++++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~ 72 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEA 72 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeC
Confidence 457899999999999999999987 5777775
No 128
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=96.41 E-value=0.002 Score=54.16 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..++.+++..|..+++++|+
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDi 115 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEI 115 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECS
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEEC
Confidence 468999999999999999999888889999987
No 129
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.41 E-value=0.0017 Score=43.89 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.8
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
|.+.|.++ +.++++|||+.+++++ ..++|.|+.|...|++...
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~---~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQ---PMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCH---HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEe
Confidence 56778877 8999999999999999 9999999999999999887
No 130
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=96.41 E-value=0.002 Score=52.48 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||.|.++..+++.+|..+++++|.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~ 117 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDV 117 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 467999999999999999999999999999986
No 131
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.41 E-value=0.0026 Score=52.24 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=34.2
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .....+|+|||||.|.++..++++ +..+++.+|+
T Consensus 20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEi 62 (249)
T 3ftd_A 20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIEL 62 (249)
T ss_dssp HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECC
T ss_pred HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEEC
Confidence 345666655 455679999999999999999987 5678888886
No 132
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.41 E-value=0.013 Score=43.54 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=48.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee--ecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ--QKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~--~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.. .....+.- ...+.+|+. ++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~~~d~R-~~~~~LT~~----G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLIITG---SSAAANVDGLISLGLVVKLNKTIPNDSM-DLTLKLSKK----GEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEESCC--CTTCT-TCEEEECHH----HHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEecCcCCCCCCc-eeEeEECHH----HHHHH
Confidence 44567777776 7899999999999999 999999999999999998 43211111 224667776 55543
No 133
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=96.40 E-value=0.0025 Score=50.66 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=30.3
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
..+..+|+|+|||+|.++..++++. |+.+++.+|.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~ 106 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEES
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEEC
Confidence 4456799999999999999999985 6788998886
No 134
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.40 E-value=0.0055 Score=47.86 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+++..+ ..+..+|||||||+|.++..+++. ..+++.+|.
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~ 107 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVER 107 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEES
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEec
Confidence 3445444 456789999999999999999998 678888886
No 135
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=96.39 E-value=0.0032 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecCC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFACH 213 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp 213 (214)
+.++|||||||+|..++.+++..| +.+++.+|+-
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s 113 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDIN 113 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESC
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECC
Confidence 467999999999999999999998 7899999873
No 136
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=96.38 E-value=0.0026 Score=51.73 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=30.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecCC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFACH 213 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp 213 (214)
+.++|||||||+|..+..+++..| +.+++.+|+-
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~ 94 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDIN 94 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECC
Confidence 467999999999999999999997 8899999863
No 137
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=96.37 E-value=0.0025 Score=50.01 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.++..+. .....+|||||||+|.++..+++. ..+++.+|+
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~ 82 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDG 82 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEES
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcC
Confidence 3444443 334589999999999999999998 668888886
No 138
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=96.37 E-value=0.0026 Score=52.48 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=27.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++..+ +++.+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~ 87 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDA 87 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEES
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEEC
Confidence 3467999999999999999999844 8888886
No 139
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.36 E-value=0.0039 Score=53.35 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
+..++.... +.+..+|+|+|||+|.+++.++... |+.+++.+|+
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di 236 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDL 236 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEES
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEEC
Confidence 344455544 5567899999999999999999998 9999999996
No 140
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.34 E-value=0.0049 Score=49.53 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++. ..+++++|+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~ 71 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDL 71 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEES
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEEC
Confidence 45679999999999999999987 668998886
No 141
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.34 E-value=0.0063 Score=48.22 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..++++.+ +++++|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~ 70 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLEL 70 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEES
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeC
Confidence 3567999999999999999999987 7888876
No 142
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=96.33 E-value=0.0025 Score=53.31 Aligned_cols=43 Identities=7% Similarity=0.237 Sum_probs=33.6
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCC--CeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPD--TKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dl 212 (214)
..+++..+ .....+|||||||+|.++..|+++.+. .+++.+|+
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDi 76 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVEL 76 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEEC
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEEC
Confidence 44555554 455779999999999999999998765 56888875
No 143
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=96.31 E-value=0.0037 Score=50.26 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=30.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
+..+|||||||+|..+..+++..| ..+++.+|.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 93 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDV 93 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEES
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEEC
Confidence 467999999999999999999998 688999886
No 144
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.31 E-value=0.0062 Score=48.24 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-----CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-----PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl 212 (214)
..+..+|||||||+|.++..+++.. |+.+++.+|.
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~ 117 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLER 117 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeC
Confidence 3456799999999999999999987 6789999886
No 145
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=96.29 E-value=0.0054 Score=48.58 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=30.2
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.....+|||||||+|..+..+++.. |+.+++.+|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~ 110 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDH 110 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeC
Confidence 3456799999999999999999985 7789999886
No 146
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=96.29 E-value=0.0068 Score=48.54 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=28.3
Q ss_pred CcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 182 KPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 182 ~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.+|||||||+|..+..++++.| +.+++.+|+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 89 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDP 89 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECS
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEEC
Confidence 3999999999999999999986 889999986
No 147
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=96.29 E-value=0.0028 Score=50.29 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.9
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
+..+|||||||+|..+..+++..| +.+++.+|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 91 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEI 91 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeC
Confidence 468999999999999999999875 889999986
No 148
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.28 E-value=0.0046 Score=47.02 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=28.8
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|+|+|||+|.++..+++.. .+++++|.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~ 63 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDR 63 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEEC
Confidence 4556799999999999999999987 78888886
No 149
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=96.28 E-value=0.0031 Score=50.03 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=30.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.+..+|||||||.|..+..+++..| +.+++.+|.
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~ 102 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEV 102 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEES
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEEC
Confidence 3568999999999999999999988 789999987
No 150
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=96.26 E-value=0.0013 Score=54.95 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=31.2
Q ss_pred cCCCCcEEeecCCchHHHHHHH-HHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIA-TAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl 212 (214)
..+..+|||||||+|.++..++ ..+|+.+++.+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 151 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDY 151 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEEC
Confidence 4467899999999999999996 7899999999997
No 151
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=96.26 E-value=0.0064 Score=48.94 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=28.1
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+..+|||||||+|.++..+++. ..+++++|.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~ 69 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDA 69 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEES
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEEC
Confidence 456789999999999999999987 567888875
No 152
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.25 E-value=0.0029 Score=44.92 Aligned_cols=77 Identities=9% Similarity=-0.002 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCcc
Q 040620 18 AQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEE 96 (214)
Q Consensus 18 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~ 96 (214)
..+++++.+.|...+|. .|.. ++++..|||+.+ ++++ ..+.+.|+.|...|++.......+.. .
T Consensus 5 ~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eLa~~l~~is~---~tls~~L~~Le~~GlI~r~~~~~d~r-~ 69 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILX---------HLTH--GKKRTSELKRLMPNITQ---KMLTQQLRELEADGVINRIVYNQVPP-K 69 (107)
T ss_dssp HHHHHHHCSTTHHHHHH---------HHTT--CCBCHHHHHHHCTTSCH---HHHHHHHHHHHHTTSEEEEEECSSSC-E
T ss_pred HHHHHHHcCccHHHHHH---------HHHh--CCCCHHHHHHHhcCCCH---HHHHHHHHHHHHCCCEEEeecCCCCC-e
Confidence 34455555555544443 3343 789999999999 9999 99999999999999999765321111 2
Q ss_pred ceeeCCCCCcccccccc
Q 040620 97 ESILLPPHLDFFSRISL 113 (214)
Q Consensus 97 ~~y~~t~~~~~~s~~l~ 113 (214)
-.|.+|+. ++.+.
T Consensus 70 ~~y~LT~~----G~~l~ 82 (107)
T 2hzt_A 70 VEYELSEY----GRSLE 82 (107)
T ss_dssp EEEEECTT----GGGGH
T ss_pred EEEEECcc----HHHHH
Confidence 46999999 77664
No 153
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=96.25 E-value=0.0066 Score=48.16 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++... ..+..+|||||||+|.++..+++.. .+++.+|.
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~ 100 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEI 100 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEES
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeC
Confidence 34455544 4566799999999999999999986 67888875
No 154
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.24 E-value=0.0038 Score=50.90 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=30.1
Q ss_pred cC-CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SK-GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.. +..+|||+|||+|.++..++++.|. +++.+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi 80 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEI 80 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECC
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEEC
Confidence 44 5789999999999999999999876 8999886
No 155
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=96.24 E-value=0.0051 Score=51.84 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCC-CeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPD-TKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl 212 (214)
.+++..+ ..+..+|||||||.|.++..+++..+. .+++.+|+
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 108 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 108 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEEC
Confidence 3445444 455689999999999999999999884 78888886
No 156
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.23 E-value=0.0018 Score=44.79 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=39.8
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
|.++|.+. +.+++.|||+.+++++ ..++|.|+.|...|++...
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~---~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQ---PLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCH---HHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEE
Confidence 56778877 8999999999999999 9999999999999999987
No 157
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=96.23 E-value=0.0058 Score=51.09 Aligned_cols=33 Identities=15% Similarity=-0.031 Sum_probs=27.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||+|.++..+++ .|..+++.+|+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~ 65 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDI 65 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEES
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeC
Confidence 3567999999999999999988 47788999986
No 158
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=96.21 E-value=0.004 Score=52.64 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=30.5
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|+|||||+|.++..++.+.|+.+++.+|+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDi 154 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEI 154 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEES
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEEC
Confidence 55688999999999988877777789999999996
No 159
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=96.20 E-value=0.0032 Score=54.57 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=30.8
Q ss_pred CCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++.+ |+.+++.+|+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~ 116 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDM 116 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEEC
Confidence 356799999999999999999997 8999999997
No 160
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.20 E-value=0.0026 Score=43.39 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=46.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
....|.++|..+ + +|+.|||+++|+++ ..+++.|..|...|++...+.+ +-.|.++..
T Consensus 18 ~~~~IL~lL~~~-g-~sa~eLAk~LgiSk---~aVr~~L~~Le~eG~I~~~~~~-----PP~W~~~~~ 75 (82)
T 1oyi_A 18 IVCEAIKTIGIE-G-ATAAQLTRQLNMEK---REVNKALYDLQRSAMVYSSDDI-----PPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHSSS-T-EEHHHHHHHSSSCH---HHHHHHHHHHHHHTSSEECSSS-----SCEEESCC-
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEeCCCC-----CCcceeccC
Confidence 334567788875 4 99999999999999 9999999999999999987521 456777765
No 161
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.20 E-value=0.0016 Score=46.12 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=40.4
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.++.|+..|.. +++|+.|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 27 ~r~~IL~~L~~--~~~~~~ela~~l~is~---stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 27 NRIRIMELLSV--SEASVGHISHQLNLSQ---SNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEE
Confidence 44556666764 7899999999999999 99999999999999998765
No 162
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.19 E-value=0.0077 Score=44.70 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCCC
Q 040620 16 AQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQ 94 (214)
Q Consensus 16 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 94 (214)
+...+++++.+-|...+|... .. +++++.||++.+ |+++ ..|.+.|+.|...|++.......+..
T Consensus 15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gIs~---~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSITQ---RMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTSCH---HHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhcccCH---HHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 456667777777776666543 23 899999999999 9999 99999999999999999765311111
Q ss_pred ccceeeCCCCCcccccccc
Q 040620 95 EEESILLPPHLDFFSRISL 113 (214)
Q Consensus 95 ~~~~y~~t~~~~~~s~~l~ 113 (214)
.-.|.+|+. ++.+.
T Consensus 81 -~v~y~LT~~----G~~l~ 94 (131)
T 4a5n_A 81 -KVEYSLTEF----GRTLE 94 (131)
T ss_dssp -EEEEEECTT----GGGGH
T ss_pred -eEEEEECHh----HHHHH
Confidence 246999999 88886
No 163
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=96.18 E-value=0.0031 Score=53.10 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+.++|||||||.|..+..+++..|..+++++|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 127 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDI 127 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEEC
Confidence 3468999999999999999999888889999987
No 164
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.17 E-value=0.0046 Score=46.66 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=49.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+..|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.++
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~DrR-~~~l~LT~~----G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFIKP---QSANKILQDLLANGWIEKAPDPTHGR-RILVTVTPS----GLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCG---GGHHHHHHHHHHTTSEEEEECCSSSC-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCcCeEecCCCCcCC-eeEeEECHh----HHHHH
Confidence 34467777776 7999999999999999 99999999999999999775311110 123667776 55553
No 165
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.17 E-value=0.003 Score=42.49 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=38.8
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
.|++.|..+ +++|..|||+.+|+++ ..+++.|+.|...|++...
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgvs~---~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAVTD---YQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTSCH---HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEe
Confidence 356677765 7899999999999999 9999999999999999854
No 166
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.16 E-value=0.0044 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||+|.++..++++ ..+++++|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~ 60 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDI 60 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEEC
Confidence 35679999999999999999998 678999886
No 167
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=96.15 E-value=0.0077 Score=54.10 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++.++ ..+..+|+|||||+|.+++.+++ .|..+++.+|+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~ 189 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEA 189 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEEC
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEc
Confidence 344555554 44567999999999999998887 68889999986
No 168
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=96.15 E-value=0.0068 Score=51.36 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=33.5
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
++...+ .....+|||||||+|.++..+++. .|+.+++.+|+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~ 138 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEV 138 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeC
Confidence 344444 455779999999999999999998 58899999986
No 169
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.15 E-value=0.005 Score=48.14 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||+|.++..++++ ..+++++|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~ 73 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDG 73 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEES
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECC
Confidence 35679999999999999999988 568888886
No 170
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.14 E-value=0.0026 Score=46.65 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|+++||+++++++ ..++++++.|...|++..... . .+.|.+..-
T Consensus 25 ~~~s~~ela~~~~i~~---~~v~~il~~L~~~Glv~~~~g----~-~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSE---HYLEQLVSPLRNAGLVKSIRG----A-YGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEEEC---------CCEEESSC
T ss_pred CcCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceEecCC----C-CCceEeCCC
Confidence 7899999999999999 999999999999999987631 0 367887766
No 171
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.13 E-value=0.001 Score=47.47 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+.|+..|.. +++|+.|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 28 ~~IL~~L~~--~~~s~~eLa~~lgis~---stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 28 LQILDLLAQ--GERAVEAIATATGMNL---TTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEE
Confidence 345556664 7899999999999999 99999999999999998764
No 172
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=96.12 E-value=0.0053 Score=49.54 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.+.++|||||||.|..+..+++..| +.+++.+|+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~ 103 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDF 103 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEES
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC
Confidence 3568999999999999999999998 789999886
No 173
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.11 E-value=0.025 Score=41.30 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=46.0
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.|+..|. . +++|..+||+.+++++ ..+.+.++.|...|++.......|.- ...+.+|+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~s~---~tvs~~l~~Le~~glv~r~~~~~d~r-~~~~~lT~~ 99 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFVTQ---SAITASVDKLEEMGLVVRVRDREDRR-KILIEITEK 99 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEECSSCTT-CEEEEECHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCCCc---hhHHHHHHHHHHCCCEEeecCCCCCc-eEEEEECHH
Confidence 444666777 4 8999999999999999 99999999999999999764211111 123666666
No 174
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.11 E-value=0.0048 Score=50.77 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||||||.|.++..++++ ..+++.+|.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~ 150 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDH 150 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEES
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEEC
Confidence 35789999999999999999998 568999886
No 175
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.11 E-value=0.0055 Score=44.90 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=48.8
Q ss_pred cCcchhh-hcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 39 LRIPDII-NNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 39 lglfd~L-~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+.|+..| ... +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.++
T Consensus 40 ~~iL~~l~~~~-~~~t~~~la~~l~~s~---~~vs~~l~~L~~~glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 106 (146)
T 2fbh_A 40 WLVLLHLARHR-DSPTQRELAQSVGVEG---PTLARLLDGLESQGLVRRLAVAEDRR-AKHIVLTPK----ADVLI 106 (146)
T ss_dssp HHHHHHHHHCS-SCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEECCBTTBC-SCEEEECTT----HHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHhCCCh---hhHHHHHHHHHHCCCeeecCCCcccC-eeeeEECHh----HHHHH
Confidence 3366677 544 8999999999999999 99999999999999999864211111 233777777 65554
No 176
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=96.11 E-value=0.0031 Score=52.37 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=30.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..++.+++..|..+++++|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEi 107 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDI 107 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEES
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEEC
Confidence 468999999999999999998878889999987
No 177
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=96.10 E-value=0.004 Score=51.52 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=31.5
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|+|+|||+|.+++.++++.|..+++.+|+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~ 151 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEK 151 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEEC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeC
Confidence 34567999999999999999999999889999886
No 178
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=96.08 E-value=0.0033 Score=53.91 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+.++|||||||.|..++.++++.|..+++.+|+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDi 152 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEI 152 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEEC
Confidence 3568999999999999999999888899999986
No 179
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.07 E-value=0.0054 Score=53.42 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=34.0
Q ss_pred hHHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 166 IASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+++.++ .....+|||||||+|.++..++++ ..+++.+|.
T Consensus 95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~ 137 (416)
T 4e2x_A 95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEP 137 (416)
T ss_dssp HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECC
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECC
Confidence 4455666665 556789999999999999999987 448888886
No 180
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=96.06 E-value=0.0044 Score=49.80 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.9
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
+.++|||||||.|..+..+++..| +.+++.+|.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~ 105 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQ 105 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEES
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEEC
Confidence 467999999999999999999998 788999886
No 181
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=96.06 E-value=0.0046 Score=49.21 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=27.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..+++. ..+++++|+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~ 83 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDI 83 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEEC
Confidence 5679999999999999999998 668888886
No 182
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.05 E-value=0.0065 Score=50.60 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .....+|||||||+|.++..++++.. +++.+|+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~ 58 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACEL 58 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEES
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEEC
Confidence 355666665 45667999999999999999999854 7888775
No 183
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.05 E-value=0.0016 Score=44.98 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 31 LSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 31 ~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++..-.++.|+..|..+ +++|..+||+.+++++ ..+.+.|+.|...|++.......++. ...|.+|+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~---~tvs~~l~~L~~~gli~~~~~~~~~r-~~~~~lt~~ 79 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTP---GNLDSHIRVLERNGLVKTYKVIADRP-RTVVEITDF 79 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEEECSSSC-EEEEEECHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEecCCCcc-eEEEEECHH
Confidence 344445566677777644 7899999999999999 99999999999999998643110111 245677766
No 184
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.04 E-value=0.012 Score=43.54 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=40.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+.|+..|... +++|..+||+.+++++ ..+.+.++.|...|++....
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~s~---~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEVKP---SAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEeecC
Confidence 3366677665 7899999999999999 99999999999999999865
No 185
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=96.01 E-value=0.0089 Score=47.48 Aligned_cols=40 Identities=18% Similarity=0.030 Sum_probs=30.6
Q ss_pred HHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 170 LIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 170 ~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+...++ .....+|||||||+|.++..++++.+ .+++++|+
T Consensus 35 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~ 74 (243)
T 3bkw_A 35 LRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDL 74 (243)
T ss_dssp HHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEES
T ss_pred HHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcC
Confidence 444444 34567999999999999999998833 38888886
No 186
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.00 E-value=0.0098 Score=50.09 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .....+|||||||+|.++..++++ ..+++.+|+
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEi 80 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEI 80 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEES
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEEC
Confidence 455666655 556679999999999999999998 567888875
No 187
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.00 E-value=0.005 Score=47.89 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|+|||+|.++..+++. +..+++.+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~ 82 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDI 82 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEES
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEEC
Confidence 34679999999999999999987 6567999886
No 188
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.00 E-value=0.0066 Score=46.79 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=27.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|+|+|||+|.++..+++. +..+++.+|+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~ 75 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVES 75 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEEC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEEC
Confidence 4679999999999999988774 6678999886
No 189
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=95.99 E-value=0.0037 Score=52.47 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|..+..+++..|..+++++|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 122 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEV 122 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEES
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEEC
Confidence 357999999999999999999888899999986
No 190
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.98 E-value=0.0054 Score=47.59 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|||||||+|.++..++++ +.+++++|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~ 71 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEP 71 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECC
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeC
Confidence 579999999999999999998 558888886
No 191
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.98 E-value=0.002 Score=46.55 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 31 LSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 31 ~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.+|.--.++.|+..|.+ +|+++.+||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~---~tvs~hL~~L~~~GlV~~~~~---gr-~~~y~l~~~ 77 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDMAL---PSFMKHIHFLEDSGWIRTHKQ---GR-VRTCAIEKE 77 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCH---HHHHHHHHHHHHTTSEEEEEE---TT-EEEEEECSH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCH---HHHHHHHHHHHHCCCeEEEec---CC-EEEEEECHH
Confidence 44444556667777775 8999999999999999 999999999999999987651 11 234666665
No 192
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=95.96 E-value=0.0088 Score=49.09 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=31.0
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.++..++ .+..+|||||||.|.++..+++. ..+++++|+
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~ 98 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDL 98 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEES
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEEC
Confidence 3445444 23579999999999999999998 678999886
No 193
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=95.96 E-value=0.01 Score=50.80 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
..+++... ..+..+|||||||+|.++..++++ +..+++.+|..
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s 82 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAS 82 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECS
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCH
Confidence 33445443 345679999999999999998885 66789988863
No 194
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=95.96 E-value=0.0037 Score=53.18 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|+|||||+|..++.+++..|..+++.+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 148 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEI 148 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEES
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEEC
Confidence 457999999999999999999888899999986
No 195
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=95.95 E-value=0.0099 Score=50.75 Aligned_cols=35 Identities=26% Similarity=0.139 Sum_probs=29.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
..+..+|||||||+|.++..++++ +..+++.+|.-
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s 96 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQS 96 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESS
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChH
Confidence 445689999999999999999987 55689998863
No 196
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.94 E-value=0.0082 Score=49.93 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .... +|||||||+|.++..++++. .+++.+|+
T Consensus 36 ~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEi 76 (271)
T 3fut_A 36 LRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEK 76 (271)
T ss_dssp HHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEES
T ss_pred HHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEEC
Confidence 345555554 4445 99999999999999999985 56777775
No 197
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=95.94 E-value=0.0039 Score=50.57 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+++..+ .....+|||||||.|.++..++++. .+++.+|+
T Consensus 18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~ 59 (245)
T 1yub_A 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIEL 59 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSS
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEEC
Confidence 345566555 4556799999999999999999985 77888886
No 198
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=95.93 E-value=0.0093 Score=51.77 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecCC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFACH 213 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp 213 (214)
..+++.++ .....+|+|+|||+|.++..+++++ |..+++.+|+-
T Consensus 29 ~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~ 73 (421)
T 2ih2_A 29 DFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEID 73 (421)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESC
T ss_pred HHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECC
Confidence 33444443 2345699999999999999999988 77899999873
No 199
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=95.93 E-value=0.0041 Score=52.62 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..+..+++..|..+++++|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 109 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDI 109 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEES
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEEC
Confidence 458999999999999999999888899999986
No 200
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=95.92 E-value=0.0049 Score=49.07 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..++++ ..+++.+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~ 78 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDF 78 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEES
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEEC
Confidence 4679999999999999999998 678888886
No 201
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=95.91 E-value=0.004 Score=52.52 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+.++|||||||.|..++.++++.|..+++.+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 127 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEI 127 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEES
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEEC
Confidence 3468999999999999999999988899999986
No 202
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.91 E-value=0.0025 Score=46.95 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=49.2
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.+..|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDT---PTVNRIVDVLLRKELIVREISTEDRR-ISLLSLTDK----GRKET 105 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC----CC-SCEEEECHH----HHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCH---hhHHHHHHHHHHCCCeeccCCCccCc-eeeeeECHH----HHHHH
Confidence 344466677766 8999999999999999 99999999999999999764211111 234667776 55553
No 203
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=95.91 E-value=0.012 Score=47.02 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.++...+ .....+|+|+|||+|.++..+++. ..+++.+|.
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~ 121 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEA 121 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECS
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEec
Confidence 3444444 456779999999999999999999 778999886
No 204
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=95.91 E-value=0.0041 Score=51.79 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..+..+++..|..+++++|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi 110 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEI 110 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEES
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEEC
Confidence 468999999999999999999888899999986
No 205
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.91 E-value=0.0018 Score=46.90 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 33 LKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 33 L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|.--.++.|+..|.. ++.++.|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 18 L~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~---stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 18 LADPTRCRILVALLD--GVCYPGQLAAHLGLTR---SNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCH---HHHHHHHHHHTTTTSEEEEE
T ss_pred hCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceEEEE
Confidence 333445566677764 7899999999999999 99999999999999998764
No 206
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=95.90 E-value=0.011 Score=49.72 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+++.+.. .....++||||||+|.++..+++. +..+++.+|+
T Consensus 75 ~~l~~~~~-~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDv 116 (291)
T 3hp7_A 75 KALAVFNL-SVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDV 116 (291)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECS
T ss_pred HHHHhcCC-CccccEEEecCCCccHHHHHHHhC-CCCEEEEEEC
Confidence 34555541 124579999999999999998887 5668999886
No 207
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=95.89 E-value=0.0042 Score=51.16 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..|++++. +++.+|.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~ 69 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDP 69 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEES
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeC
Confidence 457899999999999999998864 6777775
No 208
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=95.88 E-value=0.0044 Score=51.53 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..+..++++ |..+++++|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDi 106 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEI 106 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEES
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEEC
Confidence 4579999999999999999998 9899999986
No 209
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0066 Score=48.11 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=29.7
Q ss_pred cCCCCcEEeecCC-chHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGS-TGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+..+||||||| +|.++..+++.. ..+++.+|+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~ 87 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEV 87 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEEC
Confidence 3457899999999 999999999987 778898886
No 210
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.86 E-value=0.011 Score=46.83 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..+++. ..+++++|.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~ 67 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDL 67 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECS
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEEC
Confidence 4679999999999999999998 467888886
No 211
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.85 E-value=0.0042 Score=45.24 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=48.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.++..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~L~~~gli~r~~~~~d~R-~~~~~lT~~----G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDL---GALTRMLDRLVCKGWVERLPNPNDKR-GVLVKLTTG----GAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECTTCSS-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCCh---HHHHHHHHHHHHCCCEEecCCcccCc-eeEeEEChh----HHHHH
Confidence 33456666655 7899999999999999 99999999999999999864211111 123677777 65554
No 212
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=95.83 E-value=0.0051 Score=49.25 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++..+ .+++.+|+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~ 91 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIEC 91 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEEC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcC
Confidence 457999999999999999966544 37888886
No 213
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=95.83 E-value=0.0068 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.+.++|||||||+|.++..++++ +..+++.+|+-
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s 98 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS 98 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH
Confidence 34689999999999999999998 77799999863
No 214
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.82 E-value=0.0025 Score=47.21 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+++|..+||+.+++++ ..+.+.++.|...|++.... ...|.+|+. +..+.
T Consensus 21 ~~~~~~ela~~l~vs~---~tvs~~l~~Le~~Glv~r~~-------~~~~~LT~~----g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVHP---SSVTKMVQKLDKDEYLIYEK-------YRGLVLTSK----GKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEET-------TTEEEECHH----HHHHH
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEEee-------CceEEEchh----HHHHH
Confidence 7899999999999999 99999999999999999886 578899988 66654
No 215
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=95.81 E-value=0.0081 Score=46.78 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=27.4
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|+|||+|.++..+++..+ .+++.+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~ 80 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEV 80 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEES
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEEC
Confidence 3467999999999999999998743 37888886
No 216
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=95.81 E-value=0.0064 Score=50.44 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++.++ . ...+|||||||+|.++..++++ ..+++.+|+
T Consensus 73 ~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~ 112 (299)
T 3g2m_A 73 REFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALEL 112 (299)
T ss_dssp HHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEES
T ss_pred HHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEEC
Confidence 44555544 2 3449999999999999999998 578888886
No 217
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=95.80 E-value=0.0051 Score=52.23 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..++.+++..|..+++++|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDi 140 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEI 140 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECS
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEEC
Confidence 457999999999999999999888999999986
No 218
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.79 E-value=0.0055 Score=50.48 Aligned_cols=41 Identities=12% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|+|||||+|.++..++++. .+++.+|+
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEi 59 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEI 59 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEEC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEEC
Confidence 44555554 4557799999999999999999985 57888775
No 219
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=95.78 E-value=0.0047 Score=49.49 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..++++. ..+++++|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~ 110 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDI 110 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeC
Confidence 46799999999999999999887 568888886
No 220
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.78 E-value=0.0045 Score=41.65 Aligned_cols=47 Identities=9% Similarity=0.253 Sum_probs=40.8
Q ss_pred cCcchhhhcCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSG-QPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~-~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..|++.|...+ +++|++||++.+ +++. ..++|.|+.|...|++....
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~---~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGL---ATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHHHHCCCeEEEe
Confidence 34777887654 689999999999 8988 99999999999999999764
No 221
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.76 E-value=0.0035 Score=46.33 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=40.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.++.++..|... +++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDK---AAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeec
Confidence 344566777776 7999999999999999 99999999999999999764
No 222
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.74 E-value=0.0024 Score=46.53 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=49.4
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...|.+|+. ++.+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~L~~~glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAMDA---ATIKGVVERLDKRGLIQRSADPDDGR-RLLVSLSPA----GRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTCCH---HHHHHHHHHHHHTTCEEEEEETTEEE-EEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeeCCCCCCC-eeeeEECHh----HHHHH
Confidence 45577777765 7999999999999999 99999999999999999754210000 123677777 55543
No 223
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.74 E-value=0.029 Score=41.46 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=38.6
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ 86 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 86 (214)
..++..| .. +++|..+||+.+++++ ..+.++++.|...|++..
T Consensus 41 ~~iL~~l-~~-~~~t~~eLa~~l~~~~---~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 41 SHVLNML-SI-EALTVGQITEKQGVNK---AAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHH-HH-SCBCHHHHHHHHCSCS---SHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHH-Hc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEe
Confidence 3467777 54 8999999999999999 999999999999999996
No 224
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.72 E-value=0.014 Score=44.29 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=49.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~r~~~~~DrR-~~~~~LT~~----G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGVQP---SATGRMVDRLVGAELIDRLPHPTSRR-ELLAALTKR----GRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEECSSCSS-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEeccCCCCCC-eeEEEECHH----HHHHH
Confidence 44567777765 7899999999999999 99999999999999999864211111 223667777 55544
No 225
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.71 E-value=0.0098 Score=45.25 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|||||.|.++..+++. +.+++.+|.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~ 76 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDL 76 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEES
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcC
Confidence 35679999999999999999988 568888875
No 226
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.69 E-value=0.0036 Score=45.72 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=40.5
Q ss_pred hcCcchhhhcCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQP-MTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p-~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|..+++| +|+.|||+++++++ ..+.|.|+.|...|++....
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~---sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDV---STVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEeeC
Confidence 34466666665466 99999999999999 99999999999999998753
No 227
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0052 Score=48.98 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.8
Q ss_pred CcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 182 KPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 182 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+|||||||+|.++..+++ +..+++++|+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~ 96 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDI 96 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEEC
Confidence 5999999999999999976 6778999886
No 228
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.68 E-value=0.0039 Score=45.95 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=49.8
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.+..|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPK---QTVSGVCKTLAGQGLIEWQEGEQDRR-KRLLSLTET----GKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECCCSSCGG-GSCEEECHH----HHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEeeccCCCCCc-eeeeeEChh----HHHHH
Confidence 345566777665 7899999999999999 99999999999999999764211110 224667777 55543
No 229
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.68 E-value=0.025 Score=41.49 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=49.9
Q ss_pred HHhcCcchhhhc-CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 36 AIQLRIPDIINN-SGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 36 a~~lglfd~L~~-~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..++.|+..|.. . +++|..+||+.+++++ ..+.+.++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 35 ~~~~~iL~~l~~~~-~~~~~~~la~~l~i~~---~~vs~~l~~Le~~glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG-GDVTPSELAAAERMRS---SNLAALLRELERGGLIVRHADPQDGR-RTRVSLSSE----GRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT-SCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEC-------CCEEEECHH----HHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCh---hhHHHHHHHHHHCCCEeeCCCCCCCC-ceeeEECHH----HHHHH
Confidence 344567777776 5 8999999999999999 99999999999999999764211111 223667777 55543
No 230
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=95.68 E-value=0.007 Score=49.57 Aligned_cols=31 Identities=3% Similarity=-0.240 Sum_probs=27.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||.|..+..|+++ ..+++.+|+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~ 98 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEI 98 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECS
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEEC
Confidence 4679999999999999999987 668999986
No 231
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.0024 Score=52.42 Aligned_cols=61 Identities=10% Similarity=0.185 Sum_probs=50.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRIS 112 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l 112 (214)
++.|+..|..+ +++|..|||+++|+++ ..+.|.|+.|...|++...+. ...|.+|+. ++.+
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lglsk---sTv~r~L~~Le~~GlV~r~~r------~~~~~LT~~----G~~l 214 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDKSE---KTLINKIAELKKFGILTQKGK------DRKVELNEL----GLNV 214 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEETT------TTEEEECHH----HHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEeCC------ccEEEECHH----HHHH
Confidence 34456666555 7899999999999999 999999999999999998753 578999988 5555
No 232
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.67 E-value=0.0056 Score=46.64 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=48.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|...++++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.++
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~~---~tvs~~l~~Le~~GlV~r~~~~~DrR-~~~l~LT~~----G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIEQ---PSLVRTLDQLEDKGLISRQTCASDRR-AKRIKLTEK----AEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEC---------CEEEECGG----GHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCH---hhHHHHHHHHHHCCCEEeeCCCCCCC-eeEEEECHH----HHHHH
Confidence 4446667765337899999999999999 99999999999999999765211110 234777777 66654
No 233
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.67 E-value=0.0086 Score=43.65 Aligned_cols=67 Identities=9% Similarity=0.210 Sum_probs=48.8
Q ss_pred cCcchhhhcCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 39 LRIPDIINNSGQ-PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 39 lglfd~L~~~~~-p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..++..|...++ ++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~~~---~tvs~~l~~Le~~Gli~r~~~~~d~R-~~~i~lT~~----G~~~~ 104 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSIKS---STATVLLQRMEIKKLLYRKVSGKDSR-QKCLKLTKK----ANKLE 104 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECSSCTT-SEEEEECHH----HHTTH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCc---chHHHHHHHHHHCCCEEeeCCCcCCC-eeeeEECHH----HHHHH
Confidence 345666766522 899999999999999 99999999999999998765211111 224667777 66554
No 234
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=95.66 E-value=0.0075 Score=49.93 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=29.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|+|||+|.+++.+++..+. +++.+|+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~ 156 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEK 156 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEEC
Confidence 4679999999999999999999887 8888886
No 235
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.65 E-value=0.017 Score=43.43 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=48.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~Le~~Glv~r~~~~~DrR-~~~~~LT~~----G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQ---STTSRTVDQLVDEGLAARSISDADQR-KRTVVLTRK----GKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEECC---CCC-SCEEEECHH----HHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeeCCcccCC-eeEeeECHH----HHHHH
Confidence 34466777765 7899999999999999 99999999999999999765211111 234667776 55543
No 236
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=95.65 E-value=0.0089 Score=46.86 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=26.3
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|||+|||+|.++..++++.+ .+++.+|+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~ 84 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLEL 84 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECS
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEEC
Confidence 57999999999999999887754 57888886
No 237
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=95.64 E-value=0.012 Score=49.70 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=30.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
.....+|+|+|||+|..+..+++..+ ..+++.+|+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~ 151 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDV 151 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcC
Confidence 44567999999999999999999976 478999986
No 238
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.62 E-value=0.0034 Score=46.62 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=46.7
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.++.++..|...++++|..+||+.+++++ ..+.++++.|...|++.......|.- .-.+.+|+. ++.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~---~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDP---SQIVGLVDELEERGLVVRTLDPSDRR-NKLIAATEE----GRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCH---HHHHHHHHHHHTTTSEEC------------CEECHH----HHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEEeeCCccccc-hheeeECHH----HHHHH
Confidence 34446667765546899999999999999 99999999999999999764210100 112666666 55554
No 239
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=95.62 E-value=0.015 Score=48.07 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=27.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...++|||||||+|.+++.+++. ...+++.+|+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~ 110 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDY 110 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEEC
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeC
Confidence 35679999999999999988886 3458999997
No 240
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.61 E-value=0.006 Score=45.55 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=47.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~Le~~Gli~r~~~~~d~R-~~~~~lT~~ 107 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTK---SNVTNVVDSLEKRGLVVREMDPVDRR-TYRVVLTEK 107 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEEEEECTTTSS-CEEEEECHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeeCCCCCcc-eeEEEECHH
Confidence 355577777765 7899999999999999 99999999999999999864211111 123666666
No 241
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=95.60 E-value=0.0086 Score=47.85 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=27.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++.. .+++.+|+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~ 108 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDI 108 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEES
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEEC
Confidence 46799999999999999999974 78888886
No 242
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=95.60 E-value=0.014 Score=48.27 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCcEEeecCCchHHHH----HHHHHCCCCeE--EEecC
Q 040620 180 GLKPLVDVGGSTGTMAR----AIATAFPDTKC--TVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~v~Dl 212 (214)
+..+|||||||+|.++. .++.++|+.++ ++.|.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~ 90 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP 90 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeC
Confidence 34689999999997654 45667788854 88874
No 243
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.59 E-value=0.006 Score=45.16 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=46.7
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~~vs~~l~~Le~~Glv~r~~~~~d~R-~~~~~lT~~ 103 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKR---QYISRILQEVQRAGLIERRTNPEHAR-SHRYWLTPR 103 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEECCSSSTT-SCEEEECHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCeeecCCccccc-ceeeEEChh
Confidence 34466777766 7899999999999999 99999999999999999865211111 124566666
No 244
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=95.59 E-value=0.011 Score=50.17 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
+.++|||||||+|.++..++++ +..+++.+|..
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s 70 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS 70 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH
Confidence 4679999999999999998886 66689988863
No 245
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.57 E-value=0.0038 Score=47.45 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 29 KSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 29 ~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
...+|.--.++.|+..|.. +|+|+.|||+.+|+++ ..+.+.|+.|...|++..... +. ...|.+++.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~---stvs~hL~~L~~aGlV~~~~~---Gr-~~~y~lt~~ 117 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPASR---SAISQHLRVLTEAGLVTPRKD---GR-FRYYRLDPQ 117 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCH---HHHHHHHHHHHHTTSEEEEEE---TT-EEEEEECHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEec---CC-EEEEEEChH
Confidence 4566666778888888985 8999999999999999 999999999999999987651 11 234666655
No 246
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=95.56 E-value=0.011 Score=47.05 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.1
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCC------CCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFP------DTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl 212 (214)
.....+|||||||+|.++..+++..+ ..+++.+|+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~ 122 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEH 122 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEES
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEc
Confidence 34567999999999999999999766 368888885
No 247
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=95.56 E-value=0.0072 Score=48.01 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++. .+++++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~ 62 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDL 62 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEEC
Confidence 3579999999999999999887 68888886
No 248
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.55 E-value=0.0051 Score=45.85 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=48.3
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i~~---~tvs~~l~~Le~~Glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLMEQ---SRMTRIVDQMDARGLVTRVADAKDKR-RVRVRLTDD----GRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEECC-------CCCEEECHH----HHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeccCCCcCC-eeEeEECHH----HHHHH
Confidence 34466777765 7899999999999999 99999999999999998764211110 123667776 55543
No 249
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.55 E-value=0.0055 Score=45.29 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=48.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+.|+..|..+ +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...+.+|+. ++.++
T Consensus 45 ~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 110 (150)
T 2rdp_A 45 FVALQWLLEE-GDLTVGELSNKMYLAC---STTTDLVDRMERNGLVARVRDEHDRR-VVRIRLLEK----GERII 110 (150)
T ss_dssp HHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECCC----CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHHHHHCCCeeecCCCCCcc-eeEeEECHh----HHHHH
Confidence 3456677665 7899999999999999 99999999999999999764211110 123667776 55543
No 250
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=95.54 E-value=0.009 Score=49.30 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=30.8
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCC-CeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPD-TKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl 212 (214)
.....+|+|+|||+|..+..+++..++ .+++.+|+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~ 116 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEI 116 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEES
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECC
Confidence 345679999999999999999999887 78999986
No 251
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.54 E-value=0.0054 Score=44.76 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=49.1
Q ss_pred hcCcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+..++..|..++ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Gli~r~~~~~D~R-~~~~~LT~~----G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQRTG---PTVSNLLRNLERKKLIYRYVDAQDTR-RKNIGLTTS----GIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECCC--C-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCCCc---ccHHHHHHHHHHCCCEeecCCCCCCC-eeeeEECHH----HHHHH
Confidence 444666676653 5999999999999999 99999999999999999765211111 223566666 55554
No 252
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=95.54 E-value=0.017 Score=45.16 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
....+|||||||+|.++..++ .+++.+|+-
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s 95 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLA 95 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESS
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCC
Confidence 456799999999999998873 578888763
No 253
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=95.52 E-value=0.011 Score=51.22 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=30.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|+|||+|.+++.+++..+..+++.+|+
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Di 249 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEK 249 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEES
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeC
Confidence 3567999999999999999999998778998886
No 254
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.52 E-value=0.0076 Score=47.19 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=27.6
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.....+|||||||+|.++..+++.. .+++.+|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~ 81 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDV 81 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEES
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEEC
Confidence 3446799999999999999999885 47888876
No 255
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.52 E-value=0.0045 Score=45.03 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=48.4
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|..+ +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~---~tvs~~l~~L~~~glv~~~~~~~d~R-~~~~~lT~~----G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDK---GTIARTLRRLEESGFIEREQDPENRR-RYILEVTRR----GEEII 97 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEETTEEE-EEEEEECHH----HHHTH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeecCCCCce-eEEeeECHh----HHHHH
Confidence 34456667665 8899999999999999 99999999999999999854210000 122667776 55553
No 256
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.51 E-value=0.0068 Score=44.19 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=41.2
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.++.|+..|.+ +++++.+||+.+|+++ ..+.+.|+.|...|++....
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~---stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSE---SAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEE
Confidence 45567777775 7899999999999999 99999999999999998764
No 257
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.51 E-value=0.0061 Score=44.72 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=45.2
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++..|..+ +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...+.+|+.
T Consensus 33 ~iL~~l~~~-~~~t~~~la~~l~~s~---~~vs~~l~~Le~~gli~r~~~~~d~R-~~~~~lT~~ 92 (144)
T 1lj9_A 33 LYLVRVCEN-PGIIQEKIAELIKVDR---TTAARAIKRLEEQGFIYRQEDASNKK-IKRIYATEK 92 (144)
T ss_dssp HHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECSSCTT-CEEEEECHH
T ss_pred HHHHHHHHC-cCcCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEEeecCCCCCc-eeeeEEChh
Confidence 356666665 7899999999999999 99999999999999999865211110 123666666
No 258
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.49 E-value=0.035 Score=41.34 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=40.2
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++.|+..|...++++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~---~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTN---GNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCC---SCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEEeec
Confidence 4457778832237899999999999999 99999999999999999764
No 259
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=95.48 E-value=0.011 Score=46.37 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=26.2
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|||+|||+|.+++.++++.. .+++.+|+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~ 85 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEM 85 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEEC
Confidence 57999999999999999888754 37888886
No 260
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=95.48 E-value=0.024 Score=46.03 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=33.9
Q ss_pred HHHHhhcc-cccCCCCcEEeecCCchHHHHHHHHH-CCCCeEEEecC
Q 040620 168 SVLIEDCN-EVSKGLKPLVDVGGSTGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~-~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
..++..++ .......+|+|+|||+|..+..+++. -|+-+++.+|+
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~ 109 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEEC
Confidence 33444443 12556789999999999999999987 46778888886
No 261
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.45 E-value=0.006 Score=45.75 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=39.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAMDK---VAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEeeec
Confidence 34467777765 7999999999999999 99999999999999998764
No 262
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.44 E-value=0.0053 Score=46.09 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 55 vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~DrR-~~~l~LT~~----G~~~~ 118 (159)
T 3s2w_A 55 FLMRLYRE-DGINQESLSDYLKIDK---GTTARAIQKLVDEGYVFRQRDEKDRR-SYRVFLTEK----GKKLE 118 (159)
T ss_dssp HHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECC---C-CEEEEECHH----HHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEecCCCCCC-eeEEEECHH----HHHHH
Confidence 55666665 8899999999999999 99999999999999999765211110 124666666 55543
No 263
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=95.44 E-value=0.011 Score=48.38 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++. +..+++++|+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~ 95 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDI 95 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEEC
Confidence 35679999999999999998876 6668999886
No 264
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.44 E-value=0.0051 Score=43.04 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=47.2
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
|...+.. + ++..+||..+|+++ +.+++.++.|...|++.... +.|.+|+. +..++
T Consensus 13 IL~~i~~--~-~~~t~La~~~~ls~---~~~~~~l~~L~~~GLI~~~~--------~~~~LT~k----G~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANLSY---ALTGRYIKMLMDLEIIRQEG--------KQYMLTKK----GEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET--------TEEEECHH----HHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCcCH---HHHHHHHHHHHHCCCeEEEC--------CeeEEChh----HHHHH
Confidence 3344443 5 89999999999999 99999999999999999984 67999999 88775
No 265
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.41 E-value=0.013 Score=42.67 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=47.5
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.|+..|..+ +++|..+||+.+++++ ..+.+.++.|...|++.......|.- ...|.+|+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~is~---~~vs~~l~~L~~~gli~~~~~~~d~r-~~~~~lT~~ 94 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQIDR---AAVTRHLKLLEESGYIIRKRNPDNQR-EVLVWPTEQ 94 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECSSSTT-CEEEEECHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEecCCCCCCC-eeEEEECHH
Confidence 44467777765 7899999999999999 99999999999999998775211111 234667766
No 266
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=95.38 E-value=0.011 Score=53.99 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||.|.++..+++. ..++|++|+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~ 96 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDF 96 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECC
Confidence 4569999999999999999998 788999996
No 267
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=95.37 E-value=0.009 Score=50.14 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+++..+ .....+|||||||+|.++..++++ ..+++.+|+
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi 72 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDI 72 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECS
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEEC
Confidence 44555444 455679999999999999999987 457888876
No 268
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.01 Score=43.54 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=43.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.+..|+..|... + +|..+||+.+++++ ..+.+.++.|...|++.......|.- ...+.+|+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~---~tvs~~l~~L~~~Glv~r~~~~~d~R-~~~~~lT~~ 100 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQ---AAVTKAIKSLVKEGMLETSKDSKDAR-VIFYQLTDL 100 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC-----------CCEECGG
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCH---HHHHHHHHHHHHCCCeEeccCCCCCc-eeEEEECHh
Confidence 344566677764 4 99999999999999 99999999999999999764211111 234666666
No 269
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.35 E-value=0.0068 Score=45.50 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=46.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~Le~~Gli~r~~~~~d~R-~~~~~lT~~ 115 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVVEQ---STLSRALDGLQADGLVRREVDSDDQR-SSRVYLTPA 115 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEC--CCS-SEEEEECHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEEecCCCCCCC-eeEEEECHH
Confidence 44567777766 7899999999999999 99999999999999998764211110 123666666
No 270
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=95.34 E-value=0.023 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=28.3
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+.++|||||||+|.+++.++++ ...+++.+|.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~ 94 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEA 94 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEES
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEcc
Confidence 445789999999999999999998 3348888886
No 271
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.34 E-value=0.011 Score=48.04 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++..+++. ..+++++|.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~ 84 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDP 84 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEES
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeC
Confidence 5679999999999999999987 568888886
No 272
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.33 E-value=0.016 Score=42.70 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCC
Q 040620 15 QAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNE 93 (214)
Q Consensus 15 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~ 93 (214)
-+...+++++.+.|...+|.. |.. ++++..||++.+ |+++ ..|.+.|+.|...|++.......+.
T Consensus 23 c~~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gis~---~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 23 CPSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGVSE---XMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp CTHHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTCCH---HHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred CCHHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccCCH---HHHHHHHHHHHHCCcEEEEecCCCC
Confidence 345566677777766555433 333 789999999999 7999 9999999999999999976521111
Q ss_pred CccceeeCCCCCcccccccc
Q 040620 94 QEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 94 ~~~~~y~~t~~~~~~s~~l~ 113 (214)
. .-.|.+|+. ++.+.
T Consensus 89 r-~~~y~LT~~----G~~l~ 103 (131)
T 1yyv_A 89 P-HVEYSLTPL----GEQVS 103 (131)
T ss_dssp C-EEEEEECHH----HHHHH
T ss_pred C-eEEEEECcc----HHHHH
Confidence 1 235888888 66654
No 273
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.31 E-value=0.012 Score=45.58 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=25.2
Q ss_pred cEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 183 PLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 183 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+|||||||.|.++..+++. ..+++++|.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~ 59 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQ 59 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECS
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEEC
Confidence 9999999999999999987 568888886
No 274
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=95.30 E-value=0.0059 Score=50.38 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||+|.++ .++...+..+++.+|+
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~ 102 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDF 102 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECS
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCC
Confidence 4679999999999944 4444455668999986
No 275
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=95.29 E-value=0.012 Score=47.90 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.0
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.....+|+|+|||+|.++..+++.- |+=+++.+|.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~ 110 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEF 110 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeC
Confidence 6678899999999999999999974 8888888886
No 276
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.28 E-value=0.0065 Score=42.19 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=40.1
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|... +++|..+||+.+++++ ..+.+.|+.|...|++....
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~is~---~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDLSA---RFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEEe
Confidence 34455666554 7899999999999999 99999999999999999764
No 277
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=95.26 E-value=0.0077 Score=49.83 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=26.9
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|||||||+|.++..++++ -+++.+|+
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~ 103 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRA 103 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEEC
Confidence 445679999999999999999887 57888875
No 278
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=95.25 E-value=0.0077 Score=50.16 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.0
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|||||||+|.++..++++ -+++.+|+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~ 111 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKA 111 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEEC
Confidence 445679999999999999999987 57888875
No 279
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.23 E-value=0.026 Score=43.24 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|.++||+++++++ ..+++++..|...|++.-... . .|-|.+..-
T Consensus 27 ~~~s~~~IA~~~~is~---~~l~kil~~L~~aGlv~s~rG----~-~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHLNP---VMIRNILSVLHKHGYLTGTVG----K-NGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTSCG---GGTHHHHHHHHHTTSSEEECS----T-TCEEECCSC
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEeecC----C-CCCeEecCC
Confidence 7899999999999999 999999999999999976541 1 456888777
No 280
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.21 E-value=0.015 Score=42.52 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=46.7
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.|+..|... +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...+.+|+.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~L~~~gli~r~~~~~d~R-~~~~~lT~~ 100 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELALDT---GTVSPLLKRMEQVDLIKRERSEVDQR-EVFIHLTDK 100 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTCCT---TTHHHHHHHHHHTTSEEEEECSSSTT-CEEEEECHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEEeecCCCCcc-eEEEEEChH
Confidence 44566777765 7899999999999999 99999999999999999765211111 124566666
No 281
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.19 E-value=0.021 Score=42.86 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=47.5
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+.-.|...+++.+..+||+.+++++ ..+.++++.|...|++.......|.- .-.+.+|+. ++.+.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~---~tvs~~v~~Le~~GlV~R~~~~~DrR-~~~l~LT~~----G~~~~ 100 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQ---PSLVRTLDQLEEKGLITRHTSANDRR-AKRIKLTEQ----SSPII 100 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEECSSCTT-CEEEEECGG----GHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCH---HHHHHHHHHHHhCCCeEeecCCCCCc-chhhhcCHH----HHHHH
Confidence 4455655446688899999999999 99999999999999999765311111 124777777 66554
No 282
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.18 E-value=0.02 Score=43.84 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+|+|+++||+++++++ ..+++++..|...|++.-... . .|-|.+..-
T Consensus 43 ~~~s~~eIA~~~~i~~---~~l~kil~~L~~aGlv~s~rG----~-~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSE---HYLEQLIGPLRNAGIVKSIRG----A-HGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEECS----T-TCEEEECSC
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCeEEEecC----C-CCceEecCC
Confidence 7899999999999999 999999999999999986642 1 466877766
No 283
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.18 E-value=0.037 Score=40.72 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=32.9
Q ss_pred CcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.++..|..++ +++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRG---ASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEEeeC
Confidence 3555665542 6899999999999999 99999999999999998764
No 284
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=95.17 E-value=0.011 Score=48.83 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||.|..+..+++. | .+++++|+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~vei 102 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQA 102 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECS
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEEC
Confidence 4579999999999999999998 8 88999886
No 285
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=95.14 E-value=0.0034 Score=52.33 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=31.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|||||.|-++..+...+|+.+++.+|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DI 164 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDI 164 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEES
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeC
Confidence 4578999999999999999999999999999996
No 286
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.14 E-value=0.0044 Score=44.33 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCc
Q 040620 17 QAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQE 95 (214)
Q Consensus 17 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~ 95 (214)
...++++..+.|...+|. .|.. ++++..+||+.+ ++++ ..+.+.|+.|...|++.......+..
T Consensus 12 ~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eLa~~l~~is~---~tvs~~L~~Le~~GlI~r~~~~~d~r- 76 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMD---------ELFQ--GTKRNGELMRALDGITQ---RVLTDRLREMEKDGLVHRESFNELPP- 76 (112)
T ss_dssp HHHHHHTTCSTTHHHHHH---------HHHH--SCBCHHHHHHHSTTCCH---HHHHHHHHHHHHHTSEEEEEECCSSC-
T ss_pred HHHHHHHHcCccHHHHHH---------HHHh--CCCCHHHHHHHhccCCH---HHHHHHHHHHHHCCCEEEeecCCCCC-
Confidence 344555555555544443 3444 789999999999 9999 99999999999999999765211111
Q ss_pred cceeeCCCCCcccccccc
Q 040620 96 EESILLPPHLDFFSRISL 113 (214)
Q Consensus 96 ~~~y~~t~~~~~~s~~l~ 113 (214)
.-.|.+|+. ++.+.
T Consensus 77 ~~~~~LT~~----G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPE----GYALY 90 (112)
T ss_dssp EEEEEECHH----HHHHH
T ss_pred eEEEEECHh----HHHHH
Confidence 234888888 66553
No 287
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.13 E-value=0.0037 Score=46.03 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=48.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 39 ~~vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~L~~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 104 (140)
T 3hsr_A 39 YIVLMAIEND-EKLNIKKLGERVFLDS---GTLTPLLKKLEKKDYVVRTREEKDER-NLQISLTEQ----GKAIK 104 (140)
T ss_dssp HHHHHHSCTT-CEEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC--------CEEEECHH----HHHTH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCeEecCCCCCcc-eeeeeEChH----HHHHH
Confidence 3456666665 8999999999999999 99999999999999999775211111 234777777 66664
No 288
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=95.11 E-value=0.011 Score=39.55 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=47.4
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPP 103 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~ 103 (214)
+-.|++.|.++|.|+...|||+++|++. ..+.+.+..|-..|.+.-+. .-.|.++.
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdK---KeVdKaik~LKkEgkI~SPk-------RCyw~~~~ 76 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPK---RELNQVLYRMKKELKVSLTS-------PATWCLGG 76 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEE-------TTEEEESS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHcCCccCCC-------CceeeCCC
Confidence 3456777888889999999999999999 99999999999999998776 45676653
No 289
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.09 E-value=0.012 Score=44.29 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|+++||+++++++ ..+++++..|...|++..... .+.|.+..-
T Consensus 29 ~~~~~~~iA~~~~i~~---~~l~kil~~L~~~Glv~s~rG------~GGy~L~~~ 74 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNP---VVIRKIMSYLKQAGFVYVNRG------PGGAGLLKD 74 (149)
T ss_dssp GGCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEC---------CCEEESSC
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEEccC------CCceEeCCC
Confidence 7899999999999999 999999999999999986641 356777666
No 290
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.08 E-value=0.013 Score=56.19 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
+..+|||||||+|.++..+++.. |..+++.+|+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDI 754 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDI 754 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEEC
Confidence 57899999999999999999998 6679999996
No 291
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=95.07 E-value=0.017 Score=47.49 Aligned_cols=31 Identities=6% Similarity=-0.073 Sum_probs=28.1
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|+|||||.|-++..+. |..+++.+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DI 134 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDI 134 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEES
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeC
Confidence 457899999999999999888 9999999986
No 292
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.05 E-value=0.0077 Score=42.62 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCC
Q 040620 15 QAQAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNE 93 (214)
Q Consensus 15 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~ 93 (214)
-+...+++++.+.|...+|. .|.. ++++..|||+.+ |+++ ..+.+.|+.|...|++.......+.
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gis~---~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGISE---KMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTCCH---HHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccCCH---HHHHHHHHHHHHCCCEEEeecCCCC
Confidence 34556666666666655544 3333 789999999999 5999 9999999999999999976521111
Q ss_pred CccceeeCCCCCcccccccc
Q 040620 94 QEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 94 ~~~~~y~~t~~~~~~s~~l~ 113 (214)
. .-.|.+|+. ++.+.
T Consensus 79 r-~~~y~LT~~----G~~l~ 93 (107)
T 2fsw_A 79 P-RVEYSLTPL----GEKVL 93 (107)
T ss_dssp C-EEEEEECHH----HHTTH
T ss_pred C-eeEEEECcc----HHHHH
Confidence 1 245889988 76654
No 293
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.03 E-value=0.023 Score=39.08 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=41.5
Q ss_pred chhhhcCCCCCCHHHHHHHcCCCCCCccc-HHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 42 PDIINNSGQPMTLTQIIVALNVHPNKTRC-TQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 42 fd~L~~~~~p~t~~eLA~~~g~~~~~~~~-l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+..|...+.++|..|||+.+++++ .. +.++++.|...|++..++. +.- ...+.+|+.
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~is~---~t~vs~~l~~Le~~Glv~~~~~--drR-~~~~~LT~~ 78 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGVSE---KTFFMGLKDRLIRAGLVKEETL--SYR-VKTLKLTEK 78 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCCCH---HHHHTTHHHHHHHTTSEEEEEE--ETT-EEEEEECHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCc---hHHHHHHHHHHHHCCCeecCCC--CCC-eEEEEECHh
Confidence 344555423899999999999999 99 9999999999999994431 000 223566666
No 294
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.98 E-value=0.0041 Score=45.65 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=48.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|..+ +++|..+||+.+++++ ..+.+.++.|...|++.......+.- ...|.+|+. ++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~s~---~tvs~~l~~L~~~glv~r~~~~~d~r-~~~~~lT~~----G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGVAK---STVTGLVKRLEADGYLTRTPDPADRR-AYFLVITRK----GEEVI 101 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEETTEEE-EEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHHHHHCCCeeecCCCCCCc-eEEEEECHH----HHHHH
Confidence 44566677665 7899999999999999 99999999999999999764210000 123667777 55543
No 295
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=94.97 E-value=0.023 Score=49.39 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=27.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|+|+|||+|.++..+++. +.+++.+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDi 263 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVED 263 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEES
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEEC
Confidence 4679999999999999999998 568888885
No 296
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.84 E-value=0.021 Score=42.80 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|+++||+++++++ ..+++++..|...|++.-... . .+-|.+..-
T Consensus 27 ~~~s~~~IA~~~~i~~---~~l~kil~~L~~aGlv~s~rG----~-~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNLSD---LYLEQLVGPLRNAGLIRSVRG----A-KGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEECSS----S-SSEEEESSC
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCEEEecCC----C-CCCeeecCC
Confidence 6899999999999999 999999999999999985531 1 467887776
No 297
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.82 E-value=0.0071 Score=43.31 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCC--HHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCC
Q 040620 17 QAQVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMT--LTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNE 93 (214)
Q Consensus 17 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t--~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~ 93 (214)
...+++++.+.|...+|.. |.. ++.+ +.||++.+ |+++ ..+.+.|+.|...|++.....
T Consensus 17 ~~~~l~~l~~~wrl~IL~~---------L~~--g~~~~~~~eL~~~l~gis~---~~ls~~L~~Le~~GlV~r~~~---- 78 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIISV---------LGN--GSTRQNFNDIRSSIPGISS---TILSRRIKDLIDSGLVERRSG---- 78 (111)
T ss_dssp TSSTHHHHHSTTHHHHHHH---------HTS--SSSCBCHHHHHHTSTTCCH---HHHHHHHHHHHHTTSEEEEES----
T ss_pred HHHHHHHHcCccHHHHHHH---------Hhc--CCCCCCHHHHHHHccCCCH---HHHHHHHHHHHHCCCEEEeec----
Confidence 3455667777776665543 343 7877 99999999 9999 999999999999999998741
Q ss_pred CccceeeCCCCCcccccccc
Q 040620 94 QEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 94 ~~~~~y~~t~~~~~~s~~l~ 113 (214)
. ...|.+|+. ++.+.
T Consensus 79 r-~~~y~LT~~----G~~l~ 93 (111)
T 3df8_A 79 Q-ITTYALTEK----GMNVR 93 (111)
T ss_dssp S-SEEEEECHH----HHHHH
T ss_pred C-cEEEEECcc----HHHHH
Confidence 1 357888888 76664
No 298
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=94.81 E-value=0.018 Score=50.64 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=31.8
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
.....+|+|+|||+|..+..+++..|+.+++.+|+-
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~ 279 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDID 279 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESS
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCC
Confidence 345679999999999999999999999899999863
No 299
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.80 E-value=0.017 Score=42.79 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=48.2
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.++.|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSS---NTLTPMLKRLEQSGWVKRERQQSDKR-QLIITLTDN----GQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEC----------CEEEECSH----HHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEeeCCCCCCcc-eeeeeECHH----HHHHH
Confidence 344566777766 8999999999999999 99999999999999999764211110 234777777 55553
No 300
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.03 Score=49.62 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCC-CeEEEecCC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPD-TKCTVFACH 213 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp 213 (214)
.....+|+|+|||+|..+..+++..|+ .+++.+|+-
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s 293 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVD 293 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCC
Confidence 445679999999999999999999988 789998863
No 301
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.68 E-value=0.012 Score=43.19 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=50.7
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~L~~~glv~r~~~~~d~R-~~~~~LT~~----G~~~~ 108 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYLDS---GTLTPMLKRMEQQGLITRKRSEEDER-SVLISLTED----GALLK 108 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTCCH---HHHHHHHHHHHHHTSEECCBCSSCTT-SBEEEECHH----HHSGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCc---CcHHHHHHHHHHCCCEEeccCCCCCC-eeEEEECHh----HHHHH
Confidence 34466666665 6899999999999999 99999999999999999765211111 234778888 77665
No 302
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=94.63 E-value=0.014 Score=49.18 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=26.5
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..+|||||||+|.++..++++ -+++.+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence 345679999999999999999987 36777776
No 303
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.60 E-value=0.017 Score=43.34 Aligned_cols=75 Identities=9% Similarity=0.029 Sum_probs=54.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccce
Q 040620 19 QVWSYTYNYMKSLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEES 98 (214)
Q Consensus 19 ~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~ 98 (214)
..++++.+.|...+|.. |.. ++++..||++.+|+++ ..+.+.|+.|...|++....... +. ...
T Consensus 16 ~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~lgis~---~tls~~L~~Le~~GlI~r~~~~~-d~-~~~ 79 (146)
T 2f2e_A 16 RPLDVIGDGWSMLIVRD---------AFE--GLTRFGEFQKSLGLAK---NILAARLRNLVEHGVMVAVPAES-GS-HQE 79 (146)
T ss_dssp TTHHHHCSSSHHHHHHH---------HHT--TCCSHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEEEECSS-SS-CEE
T ss_pred HHHHHhCCchHHHHHHH---------HHh--CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEEEecCC-CC-eEE
Confidence 34555555555544433 333 7899999999999999 99999999999999999875311 11 247
Q ss_pred eeCCCCCcccccccc
Q 040620 99 ILLPPHLDFFSRISL 113 (214)
Q Consensus 99 y~~t~~~~~~s~~l~ 113 (214)
|.+|+. ++.+.
T Consensus 80 y~LT~~----G~~l~ 90 (146)
T 2f2e_A 80 YRLTDK----GRALF 90 (146)
T ss_dssp EEECHH----HHTTH
T ss_pred EEECch----HHHHH
Confidence 899998 77764
No 304
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.57 E-value=0.0046 Score=45.15 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=40.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|... +++|..+||+.+++++ ..+.++++.|...|++....
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~s~---~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACILR---PSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEEeec
Confidence 44566777765 7899999999999999 99999999999999998764
No 305
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.57 E-value=0.018 Score=42.90 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.5
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|+..|..+ +++|..|||+++|+++ ..+++.++.|...|++...
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKLSP---PSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEE
Confidence 34567778776 8899999999999999 9999999999999999854
No 306
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.56 E-value=0.017 Score=43.16 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=40.2
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..|||+++|+++ ..+.+.++.|...|++...
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGLSV---SAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEE
Confidence 44567777766 7899999999999999 9999999999999999754
No 307
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.53 E-value=0.0086 Score=44.47 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=49.1
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... +++|..+||+.+++++ ..+.++++.|...|++.......+.- ...+.+|+. ++.+.
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~s~---~tvs~~l~~Le~~glv~r~~~~~d~R-~~~~~lT~~----G~~~~ 115 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYLDS---ATLTPLLKRLQAAGLVTRTRAASDER-QVIIALTET----GRALR 115 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC--------CEEEECHH----HHHGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCCCc---ccHHHHHHHHHHCCCEeecCCcccCC-eeEeeECHH----HHHHH
Confidence 34466677765 7899999999999999 99999999999999999864211100 124777777 66654
No 308
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.42 E-value=0.017 Score=43.11 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..+||+++|+++ ..+.+.++.|...|++...
T Consensus 5 ~~~il~~L~~~-~~~~~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQYN-AKYSLDEIAREIRIPK---ATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTTC-TTSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEEE
Confidence 45677888876 7899999999999999 9999999999999999864
No 309
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.40 E-value=0.015 Score=41.57 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.1
Q ss_pred HHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 36 AIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 36 a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-.++.|+..|.+ +++|+.+||+.+++++ ..+.+.|+.|...|++....
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~---stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQ---SAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCH---HHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEe
Confidence 345666777776 6899999999999999 99999999999999998664
No 310
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=94.38 E-value=0.024 Score=47.56 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=25.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||||||.|..+..+++. ...+++++|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~ 79 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDP 79 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEES
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEEC
Confidence 4579999999999877776664 3468999986
No 311
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.35 E-value=0.022 Score=42.67 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++ |+++||++.++++ ..|+++|..|...|++..... .+-|.+..-
T Consensus 23 ~~-s~~~IA~~~~i~~---~~l~kIl~~L~~aGlv~s~rG------~GGy~Lar~ 67 (145)
T 1xd7_A 23 KT-SSEIIADSVNTNP---VVVRRMISLLKKADILTSRAG------VPGASLKKD 67 (145)
T ss_dssp CC-CHHHHHHHHTSCH---HHHHHHHHHHHHTTSEECCSS------SSSCEESSC
T ss_pred CC-CHHHHHHHHCcCH---HHHHHHHHHHHHCCceEeecC------CCCceecCC
Confidence 35 9999999999999 999999999999999986641 356777666
No 312
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.30 E-value=0.011 Score=45.37 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred hcCcchhhhcCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQP--MTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p--~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++.|+..|...++| +|..+||+.+++++ ..+.++++.|...|++....
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISG---PSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCS---GGGSSHHHHHHHHTSEECCC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCcCEEecC
Confidence 44467777765333 99999999999999 99999999999999998764
No 313
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.28 E-value=0.021 Score=43.25 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=40.3
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..|||+++|+++ ..+++.++.|...|++...
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVALSP---SPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEeee
Confidence 34567777776 7899999999999999 9999999999999999854
No 314
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=94.27 E-value=0.005 Score=49.61 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=28.1
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++..+ .+++++|.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~ 87 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDY 87 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEES
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecC
Confidence 3457999999999999999998876 67888886
No 315
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.24 E-value=0.021 Score=44.30 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHhcCcchhhhcC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 36 AIQLRIPDIINNS-GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 36 a~~lglfd~L~~~-~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..+..|+..|... ++++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.++
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~r~~~~~DrR-~~~l~LT~~----G~~~~ 111 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSK---QNINRLVANLEKNGYVDVIPSPHDKR-AINVKVTDL----GKKVM 111 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEECSSCSS-CEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEeccCCCCCC-eeEEEECHH----HHHHH
Confidence 3445566777642 27899999999999999 99999999999999999865311111 234777777 76665
No 316
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=94.18 E-value=0.03 Score=49.32 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCcEEeecCC------chHHHHHHHHH-CCCCeEEEecC
Q 040620 180 GLKPLVDVGGS------TGTMARAIATA-FPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dl 212 (214)
+..+||||||| +|..+..++++ +|+.+++.+|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDi 255 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDI 255 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence 46799999999 66667777765 69999999997
No 317
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.13 E-value=0.013 Score=41.42 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=37.6
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
.|+..+...|.++|..+||+.+|+++ ..+++.|..|...|++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~---~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKV---NDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCH---HHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEE
Confidence 35555533334899999999999999 9999999999999999876
No 318
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.12 E-value=0.025 Score=45.19 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 49 GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 49 ~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+++++..+||+.+++++ ..+.+.++.|...|++.... ...+.+|+. ++.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~---~tvs~~l~~Le~~GlV~r~~-------~~~i~LT~~----G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSP---PAVTEMMKKLLAEELLIKDK-------KAGYLLTDL----GLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET-------TTEEEECHH----HHHHH
T ss_pred CCCcCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEEEec-------CCCeEECHH----HHHHH
Confidence 38999999999999999 99999999999999999987 578999999 77764
No 319
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.033 Score=40.73 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|..+||+.+++++ ..+.+.++.|...|++.... ..|.+|+.
T Consensus 30 ~~~s~~ela~~l~is~---~tv~~~l~~Le~~Gli~r~~--------~~~~Lt~~ 73 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAP---SSVFEEVSHLEEKGLVKKKE--------DGVWITNN 73 (139)
T ss_dssp SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET--------TEEEECHH
T ss_pred CCcCHHHHHHHhCCCh---HHHHHHHHHHHHCCCEEecC--------CeEEEChh
Confidence 7899999999999999 99999999999999999873 57888888
No 320
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.11 E-value=0.011 Score=41.23 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=42.4
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.++.|+..|..+ +++++.|||+.+|+++ ..+.+.|+.|... ++..... |. ...|++++.
T Consensus 28 ~Rl~IL~~l~~~-~~~~~~ela~~l~is~---stvs~hL~~L~~~-lv~~~~~---gr-~~~y~l~~~ 86 (99)
T 2zkz_A 28 MRLKIVNELYKH-KALNVTQIIQILKLPQ---STVSQHLCKMRGK-VLKRNRQ---GL-EIYYSINNP 86 (99)
T ss_dssp HHHHHHHHHHHH-SCEEHHHHHHHHTCCH---HHHHHHHHHHBTT-TBEEEEE---TT-EEEEECCCH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHH-hhhheEe---Cc-EEEEEEChH
Confidence 344455333323 7899999999999999 9999999999999 8876541 11 234666654
No 321
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.05 E-value=0.044 Score=45.02 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
...+|||+|||.|.+++.+++. ..+++.+|+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~ 113 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQ 113 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEEC
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEEC
Confidence 4579999999999999999996 568888886
No 322
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.04 E-value=0.024 Score=39.22 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+++|..|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 35 ~~~t~~ela~~l~is~---~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSK---TTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEeec
Confidence 7899999999999999 99999999999999999875
No 323
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=94.04 E-value=0.041 Score=48.52 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=28.1
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+..+|+|+|||+|.++..+++. ..+++.+|.
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~ 316 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEG 316 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEES
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeC
Confidence 345679999999999999999988 678888886
No 324
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.03 E-value=0.014 Score=40.28 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccc---eeeCCCCCccccccc
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEE---SILLPPHLDFFSRIS 112 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~---~y~~t~~~~~~s~~l 112 (214)
++|..+||+.+++++ ..+.++++.|...|++.... ++ .|.+|+. ++.+
T Consensus 30 ~~t~~eLa~~l~i~~---~tvs~~l~~Le~~Glv~~~~-------d~R~~~v~LT~~----G~~~ 80 (95)
T 2qvo_A 30 DVYIQYIASKVNSPH---SYVWLIIKKFEEAKMVECEL-------EGRTKIIRLTDK----GQKI 80 (95)
T ss_dssp CEEHHHHHHHSSSCH---HHHHHHHHHHHHTTSEEEEE-------ETTEEEEEECHH----HHHH
T ss_pred CcCHHHHHHHHCcCH---HHHHHHHHHHHHCcCccCCC-------CCCeEEEEEChh----HHHH
Confidence 499999999999999 99999999999999994332 23 4778877 5554
No 325
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.088 Score=38.39 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=49.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.++.|+..|... ++ |..+||+.+++++ ..+.+.++.|...|++.......|.- .-.+.+|+. ++.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~~~LT~~----G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQ---SAITAAVDKLEAKGLVRRIRDSKDRR-IVIVEITPK----GRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEETTEEE-EEEEEECHH----HHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCCh---hHHHHHHHHHHHCCCEEeccCCCCCc-eEEEEECHH----HHHHH
Confidence 345577778776 55 9999999999999 99999999999999999765210000 114777877 66654
No 326
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.97 E-value=0.024 Score=42.35 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|+..|..+ +++|..+||+++|+++ ..+++.++.|...|++...
T Consensus 11 d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSEN-SRLTYRELADILNTTR---QRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHTTSCH---HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEE
Confidence 44577788876 8899999999999999 9999999999999999854
No 327
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.93 E-value=0.036 Score=41.80 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred hcCcchhhhcC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNS-GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~-~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+..|... ++++|..+||+.+++++ ..+.++++.|...|++.......|.- .-.+.+|+. ++.++
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~DrR-~~~l~LT~~----G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRA---PDITRLIDRLDDRGLVLRTRKPENRR-VVEVALTDA----GLKLL 116 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---C---THHHHHHHHHHHTTSEEEEEETTEEE-EEEEEECHH----HHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEeecCCCCCCC-eeEeEECHH----HHHHH
Confidence 34466667664 26999999999999999 99999999999999999764210000 113667776 55554
No 328
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=93.91 E-value=0.034 Score=43.18 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCC-eEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDT-KCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl 212 (214)
+..+|+|||||+|.++..+ .. +++.+|.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~ 64 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEP 64 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeC
Confidence 5679999999999999887 44 7888875
No 329
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.88 E-value=0.018 Score=43.16 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=45.8
Q ss_pred hhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 43 DIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 43 d~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..|... +++|..+||+.+++++ ..+++.++.|...|++.... ...+.+|+. +..+.
T Consensus 47 ~~l~~~-~~~~~~~la~~l~vs~---~tvs~~l~~Le~~Glv~r~~-------~~~~~lT~~----g~~~~ 102 (155)
T 2h09_A 47 DLIREV-GEARQVDMAARLGVSQ---PTVAKMLKRLATMGLIEMIP-------WRGVFLTAE----GEKLA 102 (155)
T ss_dssp HHHHHH-SCCCHHHHHHHHTSCH---HHHHHHHHHHHHTTCEEEET-------TTEEEECHH----HHHHH
T ss_pred HHHHhC-CCcCHHHHHHHhCcCH---HHHHHHHHHHHHCCCEEEec-------CCceEEChh----HHHHH
Confidence 355544 6799999999999999 99999999999999998875 456778877 65543
No 330
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=93.81 E-value=0.023 Score=43.20 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.6
Q ss_pred CCcEEeecCCchHHHHHHHHH
Q 040620 181 LKPLVDVGGSTGTMARAIATA 201 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~ 201 (214)
..+|+|||||+|.++..++++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~ 44 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKR 44 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTT
T ss_pred CCeEEEeccCccHHHHHHHhc
Confidence 469999999999999988764
No 331
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.81 E-value=0.026 Score=38.92 Aligned_cols=62 Identities=8% Similarity=0.155 Sum_probs=47.7
Q ss_pred CcchhhhcCCCCCCHHHH----HHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 40 RIPDIINNSGQPMTLTQI----IVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eL----A~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.|+..|..+ +++|..+| |+.+++++ ..+.++++.|...|++...... . ...|.+|+. ++.++
T Consensus 12 ~iL~~l~~~-~~~~~~el~~~la~~l~is~---~tvs~~l~~Le~~gli~r~~~~---r-~~~~~LT~~----G~~~~ 77 (99)
T 1tbx_A 12 IVLAYLYDN-EGIATYDLYKKVNAEFPMST---ATFYDAKKFLIQEGFVKERQER---G-EKRLYLTEK----GKLFA 77 (99)
T ss_dssp HHHHHHTTC-TTCBHHHHHHHHHTTSCCCH---HHHHHHHHHHHHTTSEEEEEET---T-EEEEEECHH----HHHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHHHHcCCCH---HHHHHHHHHHHHCCCEEEEecC---C-ceEEEECHH----HHHHH
Confidence 345556655 78999999 99999999 9999999999999999876420 0 345777777 66554
No 332
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.80 E-value=0.025 Score=42.38 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=40.5
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..|||+++|+++ ..+++.++.|...|++...
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGVSP---ETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTSCH---HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHcCCcceE
Confidence 34567778776 8999999999999999 9999999999999999864
No 333
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.79 E-value=0.021 Score=38.18 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=38.3
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALN----VHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g----~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..|+..|... +++|+.||++.++ +++ ..+.++|+.|...|++....
T Consensus 12 ~~vL~~L~~~-~~~t~~ei~~~l~~~~~~s~---~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWKH-SSINTNEVIKELSKTSTWSP---KTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHTS-SSEEHHHHHHHHHHHSCCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHhhcCCccH---HHHHHHHHHHHHCCCeEEEe
Confidence 4455666654 7999999999997 566 89999999999999999875
No 334
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.77 E-value=0.027 Score=42.81 Aligned_cols=47 Identities=6% Similarity=0.181 Sum_probs=41.7
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
++..|.++|..+ +++|..+||+++|+++ ..+++-++.|...|++..-
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~---~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLST---TPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCH---HHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeeec
Confidence 345678888887 8999999999999999 9999999999999999843
No 335
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.74 E-value=0.022 Score=42.65 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=40.3
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..+||+++|+++ ..+++.++.|...|++...
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGLAE---STIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCSCH---HHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEE
Confidence 34567778776 7999999999999999 9999999999999999764
No 336
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=93.70 E-value=0.048 Score=37.72 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=38.5
Q ss_pred CcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.|+..|.+.+ .+++..+||++++++. ..+.++|+.|...|++....
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~---~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEec
Confidence 3556666531 5899999999999999 99999999999999999554
No 337
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.69 E-value=0.032 Score=42.94 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=40.0
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+..|...|..+ +++|..|||+++|+++ ..+++.++.|...|++...
T Consensus 19 d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKD-ARLTISELSEQLKKPE---STIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEee
Confidence 34567777776 7899999999999999 9999999999999999754
No 338
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=93.61 E-value=0.077 Score=46.10 Aligned_cols=34 Identities=29% Similarity=0.068 Sum_probs=26.3
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF 202 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~ 202 (214)
+..++.... +.+..+|+|.+||+|.+++..+..-
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~ 217 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIG 217 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHH
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 444555555 5567899999999999999988764
No 339
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.59 E-value=0.051 Score=36.23 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=37.6
Q ss_pred chhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 42 PDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 42 fd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++.|.++ +..|+.+||.++|++. +.++|.|-.|...|.+...+
T Consensus 21 i~~L~~~-~~~Ta~~IAkkLg~sK---~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNTN-DYTTAISLSNRLKINK---KKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHTSCTT-CEECHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEC
T ss_pred HHhCCCC-cchHHHHHHHHHCCCH---HHHHHHHHHHHHCCCEecCC
Confidence 3467763 5599999999999999 99999999999999998875
No 340
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=93.59 E-value=0.056 Score=46.03 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||+|||+|.+++.+++..+ +++.+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~ 183 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDA 183 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECS
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEEC
Confidence 356999999999999999999744 8898886
No 341
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=93.54 E-value=0.028 Score=41.26 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCC-CCccceeeCCCC
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKN-EQEEESILLPPH 104 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~-~~~~~~y~~t~~ 104 (214)
..|..+||+++++++ ..+.+.++.|...|++.......+ |.....|.++|+
T Consensus 51 ~ps~~~LA~~l~~s~---~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl 102 (128)
T 2vn2_A 51 FPTPAELAERMTVSA---AECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPL 102 (128)
T ss_dssp SCCHHHHHHTSSSCH---HHHHHHHHHHHHTTSSEECC----------CEECHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHH
Confidence 379999999999999 999999999999999998643211 112234555555
No 342
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=93.52 E-value=0.083 Score=46.08 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=27.4
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPD 204 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 204 (214)
+..++.... +.+...|+|.+||+|++++..+....+
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~ 225 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQN 225 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcC
Confidence 444555555 556789999999999999988876554
No 343
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=93.46 E-value=0.053 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+.++|||||||.|..++.+++..| .+++++|+
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEI 219 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEI 219 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEES
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEEC
Confidence 3578999999999999999998765 78998886
No 344
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.44 E-value=0.059 Score=41.93 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred HHHHhcCcchhhhcCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeecCC-CCCCccceeeCCCC
Q 040620 34 KRAIQLRIPDIINNSGQPMTLTQIIVALN-VHPNKTRCTQILVCLLAHSGFFVQQKDG-KNEQEEESILLPPH 104 (214)
Q Consensus 34 ~~a~~lglfd~L~~~~~p~t~~eLA~~~g-~~~~~~~~l~rlLr~L~~~g~l~~~~~~-~~~~~~~~y~~t~~ 104 (214)
.-=.++.|+.+|.+ +|+|+.+||+.++ ++. ..+.+-|+.|...|++...... ..+..+..|++++.
T Consensus 21 a~P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~---~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 21 HHPLRWRITQLLIG--RSLTTRELAELLPDVAT---TTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp TSHHHHHHHHHTTT--SCEEHHHHHHHCTTBCH---HHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHhcCCCH---HHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 33356777888876 8999999999996 887 7899999999999999855421 01111346888777
No 345
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=93.42 E-value=0.063 Score=46.69 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.++|||||||+|.+++..+++-. -+++.+|.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~ 114 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEA 114 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeC
Confidence 367999999999999987776532 36777764
No 346
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.39 E-value=0.026 Score=40.93 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=47.8
Q ss_pred cchhhhcC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 41 IPDIINNS-GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 41 lfd~L~~~-~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++..|... ++++|..+||+.+++++ ..+.++++.|...|++.......|.- ...+.+|+. ++.+.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~i~LT~~----G~~~~ 107 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQ---PQVVKAVKILSQEDYFDKKRNEHDER-TVLILVNAQ----QRKKI 107 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHH---HHHHHHHHHHHHTTSSCCBCCSSSSC-CCEEECCSH----HHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEecCCCCCCC-eeEEEECHH----HHHHH
Confidence 45555543 26799999999999999 99999999999999999864211111 234678887 66654
No 347
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=93.38 E-value=0.087 Score=39.33 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=45.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPP 103 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~ 103 (214)
.-|++.|...++++|++||.+.+ +++. ..++|.|+.|+..|++.+... +++ ..+|..+.
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L~e~Glv~~~~~--~~~-~~~Y~~~~ 88 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSV---ATVYNNLRVFRESGLVKELTY--GDA-SSRFDFVT 88 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCH---HHHHHHHHHHHHTTSEEEECC--TTS-CCEEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCh---hhHHHHHHHHHHCCCEEEEee--CCC-ceEEECCC
Confidence 33677787655899999999999 6777 899999999999999998753 111 34676543
No 348
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=93.38 E-value=0.12 Score=42.98 Aligned_cols=33 Identities=12% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCCcEEeecCCc---hHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGST---GTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||||||. |.......+..|+.+++.+|.
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~ 113 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDN 113 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEEC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeC
Confidence 578999999997 344444455789999999986
No 349
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.36 E-value=0.028 Score=41.33 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=39.0
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
..|...|..+ +++|..+||+++|+++ ..+++.++.|...|++...
T Consensus 7 ~~il~~L~~~-~~~~~~ela~~lg~s~---~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKD-ARTPFTEIAKKLGISE---TAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEecc
Confidence 4456677665 7899999999999999 9999999999999999754
No 350
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=93.33 E-value=0.032 Score=47.40 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=28.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCC-----CeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPD-----TKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl 212 (214)
...+|+|+|||+|.++..+++..|. .+++++|+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi 167 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDV 167 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3579999999999999999999876 67888886
No 351
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.32 E-value=0.034 Score=42.86 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=41.3
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
.+..|...|..+ +++|..|||+++|+++ ..+++.++.|...|++...
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAE---STIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEee
Confidence 445677888876 7899999999999999 9999999999999999753
No 352
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.22 E-value=0.03 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=37.5
Q ss_pred cchhhh-cCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 41 IPDIIN-NSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 41 lfd~L~-~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++..|. .. +|+|..+||+.+|+++ ..+.++++.|...|++....
T Consensus 31 il~~L~~~~-~~~t~~ela~~l~~~~---stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 31 VYAILYLSD-KPLTISDIMEELKISK---GNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHCS-SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcC-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEe
Confidence 344553 23 7899999999999999 99999999999999999864
No 353
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=93.19 E-value=0.066 Score=47.86 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=30.3
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCC-CeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPD-TKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl 212 (214)
.....+|||+|||+|..+..+++..++ .+++.+|+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDi 134 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECS
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEEC
Confidence 345679999999999999999999876 68888886
No 354
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.18 E-value=0.018 Score=40.35 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=48.5
Q ss_pred hcCcchhhhcCCCCCCHHHHHH-HcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIV-ALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~-~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++.|+-.|..+ ++.|+.+||+ ..+++. ..+.|-++.|...|++..++ ++ +.+|+. ++.++
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~dr---stvsrnl~~L~r~GlVe~~~-------~D-l~LT~~----G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDLGN---AVVNSNIGVLIKKGLVEKSG-------DG-LIITGE----AQDII 78 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTSCH---HHHHHHHHHHHTTTSEEEET-------TE-EEECHH----HHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcccH---HHHHHHHHHHHHCCCeecCC-------CC-eeeCHh----HHHHH
Confidence 34455667777 6999999999 999998 89999999999999999443 34 888888 66654
No 355
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.16 E-value=0.021 Score=40.20 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=39.1
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCC----CCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNV----HPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~----~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|-+. +++|+.||+++++. ++ ..+.++|+-|...|++....
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~---sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSL---ATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCH---HHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCH---hhHHHHHHHHHHCCCEEEEe
Confidence 34466777665 79999999999985 45 78999999999999999876
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.04 E-value=0.041 Score=40.40 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=44.9
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILL 101 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~ 101 (214)
+.-|++.|.+.++++|++||.+.+ +++. ..++|.|+.|+..|++.+... +++ ..+|..
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~---~TVYR~L~~L~e~Glv~~~~~--~~~-~~~y~~ 75 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGL---TTVYRTLQSMASSGLVDTLHT--DTG-ESVYRR 75 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCH---HHHHHHHHHHHTTTSEEEEEC--TTS-CEEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHHHHCCCEEEEEe--CCC-ceEEEe
Confidence 445677776655799999999999 7777 899999999999999998753 111 356764
No 357
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=93.04 E-value=0.054 Score=44.98 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCcEEeecCCchH----HHHHHHHHCC----CCeEEEecC
Q 040620 181 LKPLVDVGGSTGT----MARAIATAFP----DTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dl 212 (214)
..+|+|+|||+|. +++.+++..| +.+++..|+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDi 145 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDI 145 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEES
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 4689999999998 6777888766 468888886
No 358
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=92.96 E-value=0.047 Score=42.76 Aligned_cols=42 Identities=19% Similarity=0.455 Sum_probs=35.9
Q ss_pred hhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 44 IINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 44 ~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.+.+.|.|.|..|||+++|+++ ..+++.|+.|...|++....
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~---~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITP---RGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEECC-
T ss_pred HHHHhCCCCCHHHHHHHcCCCc---HHHHHHHHHHHHCCCEEecC
Confidence 3444446899999999999998 88999999999999998774
No 359
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.95 E-value=0.04 Score=34.61 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=41.0
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
-.|++.|..+||-+.++..|++.|+++ +.+..+||-|...|++.-.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~k---deV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEK---QEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCH---HHHHHHHHHHHHCCCeecc
Confidence 346788888888899999999999999 9999999999999998743
No 360
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.88 E-value=0.075 Score=41.35 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.6
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGF-FVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~-l~~~~~~~~~~~~~~y~~t~~ 104 (214)
...|..+|.++++++|..|||+++|+++ +.++|-++.|...|+ +... .+.|.+.+.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~---~Ti~rdi~~L~~~G~~I~~~--------~~Gy~l~~~ 79 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSR---QVIVQDIAYLRSLGYNIVAT--------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCH---HHHHHHHHHHHHHTCCCEEE--------TTEEECCTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEEEE--------CCEEEECCc
Confidence 3457778876446799999999999999 999999999999999 6554 356777766
No 361
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=92.88 E-value=0.067 Score=42.04 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=42.8
Q ss_pred HHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 34 KRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 34 ~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
....+..|+..|. + +++|..|||+.+|+++ ..+++.++.|...|++...
T Consensus 18 ~d~~~~~IL~~L~-~-~~~s~~eLA~~lglS~---stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-N-KEMTISQLSEILGKTP---QTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-T-CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH-c-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEE
Confidence 3445666788888 4 7999999999999999 9999999999999999876
No 362
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=92.82 E-value=0.085 Score=41.34 Aligned_cols=21 Identities=24% Similarity=0.261 Sum_probs=18.3
Q ss_pred CCcEEeecCCchHHHHHHHHH
Q 040620 181 LKPLVDVGGSTGTMARAIATA 201 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~ 201 (214)
..+|||||||+|.++..+++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~ 68 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK 68 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC
T ss_pred CCcEEEeCCCCCHHHHHHHHH
Confidence 679999999999999887654
No 363
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=92.80 E-value=0.12 Score=44.88 Aligned_cols=36 Identities=28% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCC
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPD 204 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 204 (214)
+..++.... +.+...|+|.+||+|+++++.+....+
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~ 218 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMN 218 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcC
Confidence 444555555 556789999999999999988876554
No 364
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=92.67 E-value=0.021 Score=46.53 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCC-eEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDT-KCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl 212 (214)
.+..+|||||||+|.++..+++. .. +++..|+
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~ 86 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDF 86 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEES
T ss_pred CCCceEEEeCCCccHHHHHHHHh--hhcceeeccc
Confidence 34579999999999887765544 33 5787775
No 365
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=92.64 E-value=0.1 Score=45.21 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=29.7
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|||+|||+|..++.++++.|..+++..|+
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi 79 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDI 79 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEES
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEEC
Confidence 57999999999999999999999889998886
No 366
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=92.48 E-value=0.15 Score=41.85 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=26.2
Q ss_pred CcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 182 KPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 182 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+|+|+|||.|..+..++++ ..+++.+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~ 118 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLER 118 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEEC
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEEC
Confidence 79999999999999999998 567888886
No 367
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=92.44 E-value=0.11 Score=43.41 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 169 VLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 169 ~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+.+.+. +....+|||+|||+|.++.-.++..|-.+++.+|+
T Consensus 81 ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 81 WMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 3445553 55667999999999999998888777666666665
No 368
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.24 E-value=0.077 Score=41.91 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=48.3
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
..|+..|..+ +++|..+||+.+++++ ..+.++++.|...|++.......|.- .-.+.+|+. ++.++
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i~~---stvs~~l~~Le~~GlV~r~~~~~DrR-~~~l~LT~~----G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVMHV---STAFNFSKKLEERGYLRFSKRLNDKR-NTYVQLTEE----GTEVF 116 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTCCH---HHHHHHHHHHHHHTSEEEECC-------CEEEECHH----HHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEecCCCCCc-eEEEEECHH----HHHHH
Confidence 3456667665 7899999999999999 99999999999999999875211110 124667777 65554
No 369
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.14 E-value=0.019 Score=46.66 Aligned_cols=51 Identities=6% Similarity=0.105 Sum_probs=43.3
Q ss_pred HHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 040620 31 LSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ 86 (214)
Q Consensus 31 ~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 86 (214)
.+|.--.++.|+..|.. +|+|+.+||+.+|+++ ..+.+.|+.|...|++..
T Consensus 7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~---stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSVSS---TAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 34444455667777875 8999999999999999 999999999999999998
No 370
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=92.05 E-value=0.12 Score=44.68 Aligned_cols=32 Identities=22% Similarity=0.030 Sum_probs=27.7
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|+|||+|.++..+++. +..+++.+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~ 248 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDK 248 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeC
Confidence 5679999999999999999987 4557888886
No 371
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=92.03 E-value=0.13 Score=38.17 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=45.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPP 103 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~ 103 (214)
+.-|++.|.++++++|++||.+.+ +++. .-++|.|+.|+..|++.+... +++ ..+|....
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~---aTVYR~L~~L~e~Glv~~~~~--~~g-~~~Y~~~~ 80 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGL---TTVYRTLQSLADAGEVDVLRT--AEG-ESVYRRCS 80 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTTSSEEEEC--TTS-CEEEECCS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHCCCEEEEEc--CCC-ceEEEECC
Confidence 444677777655799999999988 4666 899999999999999998752 111 35787654
No 372
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=91.97 E-value=0.094 Score=46.27 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=31.2
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-------------CCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-------------PDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl 212 (214)
..+++... .....+|+|.|||+|.++..+++.. +..+++++|+
T Consensus 161 ~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei 216 (445)
T 2okc_A 161 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDN 216 (445)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEES
T ss_pred HHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeC
Confidence 33444443 3345699999999999999988764 4567888876
No 373
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=91.82 E-value=0.1 Score=43.50 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
....+|||+|||+|.+++.++++ +..+++.+|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~ 156 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEK 156 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEEC
Confidence 35789999999999999999987 5568888886
No 374
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.74 E-value=0.16 Score=35.20 Aligned_cols=54 Identities=11% Similarity=0.238 Sum_probs=42.3
Q ss_pred HHHHHHHhcCcch-hhhcCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 31 LSLKRAIQLRIPD-IINNSGQPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 31 ~~L~~a~~lglfd-~L~~~~~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..++-.++..|.+ .+.. |..+ |..+||+.+|++. ..+++-|+.|...|++....
T Consensus 14 ~~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~vSr---~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAP-GDTLPSVADIRAQFGVAA---KTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSSCT---THHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEeC
Confidence 3444555556665 4444 2566 9999999999999 99999999999999998775
No 375
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=91.70 E-value=0.11 Score=46.40 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=29.7
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCC-CeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPD-TKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl 212 (214)
.....+|||+|||+|..+..+++..++ .+++.+|+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDi 138 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEI 138 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeC
Confidence 345679999999999999999998765 67888886
No 376
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=91.66 E-value=0.073 Score=42.20 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCC-CCCccceeeCCCC
Q 040620 35 RAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGK-NEQEEESILLPPH 104 (214)
Q Consensus 35 ~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~y~~t~~ 104 (214)
--.++.|+..|.. +|+|+.+||+.+|+++ ..+.+.|+.|...|++....... .+.-.-.|.+++.
T Consensus 14 ~~~rl~IL~~L~~--~~~s~~eLa~~l~is~---stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLTK--RPYFVSELSRELGVGQ---KAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHHH--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 3344455556654 8999999999999999 99999999999999999764210 0011334666665
No 377
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=91.54 E-value=0.13 Score=44.92 Aligned_cols=31 Identities=16% Similarity=-0.021 Sum_probs=26.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||+|||+|.+++.+++.- .+++.+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDi 244 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDK 244 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEES
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEEC
Confidence 36799999999999999999974 44888886
No 378
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=91.47 E-value=0.038 Score=41.08 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+++|..+||+.+++++ ..+.++++-|...|++......+|.- .-.+.+|+.
T Consensus 50 ~~~t~~eLa~~l~~~~---~tvs~~v~~Le~~Glv~r~~~~~DrR-~~~l~LT~~ 100 (147)
T 4b8x_A 50 GELPMSKIGERLMVHP---TSVTNTVDRLVRSGLVAKRPNPNDGR-GTLATITDK 100 (147)
T ss_dssp GEEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEECC-----CEEEEECHH
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHHHHhCCCEEEeecCCcCc-eeEEEECHH
Confidence 7899999999999999 99999999999999999775311110 123666666
No 379
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=91.46 E-value=0.15 Score=34.01 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHcCC-CCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNV-HPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+.+++.++|+.+++ .. |+++.++..|.++|++.+..
T Consensus 29 ~~i~l~~aa~~L~v~~k---RRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQK---RRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTCCT---HHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCccc---eehhhHHHHHhHhcceeecC
Confidence 78999999999999 88 99999999999999999986
No 380
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=91.45 E-value=0.19 Score=43.68 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=28.0
Q ss_pred CCCcEEeecCCchHHHHHH--------HHHC-------CCCeEEEecCCC
Q 040620 180 GLKPLVDVGGSTGTMARAI--------ATAF-------PDTKCTVFACHL 214 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~ 214 (214)
+.-+|+|+|||+|..+..+ .+++ |.+++..=|||.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ 101 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS 101 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence 3568999999999887765 3344 889999999984
No 381
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.43 E-value=0.086 Score=45.45 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCC--ccceeeCCCC
Q 040620 30 SLSLKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQ--EEESILLPPH 104 (214)
Q Consensus 30 ~~~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~--~~~~y~~t~~ 104 (214)
..+++...+..|+++|. + +++|..|||+++|+++ ..+.++++-|...|++.+.+...... -...|+.++.
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gls~---~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~ 85 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGLTK---TTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPN 85 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGG
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccC
Confidence 45677778888999999 6 9999999999999999 99999999999999999875321110 0223666666
No 382
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.41 E-value=0.1 Score=38.43 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=43.8
Q ss_pred cCcchhhhcCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeC
Q 040620 39 LRIPDIINNSG-QPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILL 101 (214)
Q Consensus 39 lglfd~L~~~~-~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~ 101 (214)
.-|++.|.+++ +++|++||.+.+ +++. ..++|.|+.|+..|++.+... +++ ..+|..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L~e~Glv~~~~~--~~~-~~~Y~~ 83 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGL---ATVYRVLTQFEAAGLVVRHNF--DGG-HAVFEL 83 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHHTSEEEECS--SSS-SCEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCH---HHHHHHHHHHHHCCcEEEEEe--CCC-ceEEEe
Confidence 33677887665 789999999998 6777 899999999999999998752 111 356875
No 383
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=91.38 E-value=0.12 Score=38.84 Aligned_cols=59 Identities=10% Similarity=0.190 Sum_probs=45.2
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILL 101 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~ 101 (214)
-+.-|++.|..+++++|++||.+.+ ++++ .-++|.|+.|+..|++.+... +++ ..+|..
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~---aTVYR~L~~L~e~Glv~~~~~--~~~-~~~Y~~ 91 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI---SSVYRILNFLEKENFISVLET--SKS-GRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCH---HHHHHHHHHHHHTTSEEEEEE--TTT-EEEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH---hhHHHHHHHHHHCCcEEEEEe--CCC-ceEEEe
Confidence 3344778887655799999999998 6777 899999999999999997652 111 346775
No 384
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=91.31 E-value=0.17 Score=44.63 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.9
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|+|||+|.++..+++. ..+++.+|.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~ 320 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDS 320 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEES
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEEC
Confidence 34679999999999999999987 457888875
No 385
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=91.21 E-value=0.061 Score=39.95 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCC-CCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDG-KNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~-~~~~~~~~y~~t~~ 104 (214)
...|.++||+++|+++ +.+.++++.|...|++...... .+|.....|.++|+
T Consensus 50 ~~ps~~~LA~~~~~s~---~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL 102 (135)
T 2v79_A 50 YFPTPNQLQEGMSISV---EECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPL 102 (135)
T ss_dssp CSCCHHHHHTTSSSCH---HHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHH
Confidence 4579999999999999 9999999999999999974311 11212345666666
No 386
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=91.06 E-value=0.22 Score=44.59 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCcEEeecCCchHHHHHHHHHCC-CCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFP-DTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl 212 (214)
...+|||+|||+|..+..+++..+ ..+++.+|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDi 150 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEF 150 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECS
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC
Confidence 567999999999999999999976 478888886
No 387
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=91.03 E-value=0.19 Score=41.80 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=25.9
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEec
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFA 211 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~D 211 (214)
+....+|||+|||+|.++.-++++.|-.+++.+|
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~d 105 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFT 105 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEE
Confidence 5566799999999999999888876654444333
No 388
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=91.00 E-value=0.13 Score=43.70 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
.+..+|+|+|||+|.+++. ++ +..+++.+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~ 224 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDI 224 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEES
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEEC
Confidence 3567999999999999999 77 5778998886
No 389
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=91.00 E-value=0.16 Score=43.97 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=27.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|+|||+|.++..+++.. ..+++.+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~ 251 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDT 251 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEES
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEEC
Confidence 46799999999999999999874 457888886
No 390
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.76 E-value=0.13 Score=38.14 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
+++|..+||+.+++++ ..+.++++.|...|++...
T Consensus 51 ~~~t~~eLa~~l~~~~---~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGVER---TTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTCCH---HHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEEee
Confidence 5699999999999999 9999999999999999554
No 391
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=90.69 E-value=0.23 Score=41.94 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=45.5
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.|..+|.+. +++|.++||+++++++ +.++|-++.|...|+..+... ...|.+.+.
T Consensus 9 ~Il~~L~~~-~~~s~~eLa~~l~vS~---~ti~r~l~~L~~~G~~i~~~~------g~GY~l~~~ 63 (321)
T 1bia_A 9 KLIALLANG-EFHSGEQLGETLGMSR---AAINKHIQTLRDWGVDVFTVP------GKGYSLPEP 63 (321)
T ss_dssp HHHHHHTTS-SCBCHHHHHHHHTSCH---HHHHHHHHHHHHTTCCCEEET------TTEEECSSC
T ss_pred HHHHHHHcC-CCcCHHHHHHHHCCCH---HHHHHHHHHHHhCCCcEEEec------CCCcEEeec
Confidence 466777654 7899999999999999 999999999999999976542 457888765
No 392
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=90.59 E-value=0.19 Score=43.46 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=26.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|||+|||+|.+++.+++.. ..+++.+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~ 243 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDL 243 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEES
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEEC
Confidence 46799999999999999999863 237888886
No 393
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=90.54 E-value=0.053 Score=38.69 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=37.0
Q ss_pred cchhhhcCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeec
Q 040620 41 IPDIINNSGQPMTLTQIIVALN----VHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g----~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|+..|... +|+|..+||+.++ +++ ..+.++|+.|...|++....
T Consensus 15 vL~~l~~~-~~~t~~ela~~l~~~~~~s~---~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 15 VMNIIWMK-KYASANNIIEEIQMQKDWSP---KTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHH-SSEEHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhC-CCcCHHHHHHHHhccCCCcH---hhHHHHHHHHHHCCCeEEEe
Confidence 44445444 7899999999999 667 89999999999999999875
No 394
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=90.35 E-value=0.16 Score=43.75 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=27.2
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+..+|+|+|||+|.++..+++. ..+++.+|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~ 239 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDS 239 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEES
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEEC
Confidence 4579999999999999999998 567888886
No 395
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=90.33 E-value=0.18 Score=43.87 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=28.4
Q ss_pred CCcEEeecCCchHHHHHHHHH-----------------CCCCeEEEecCCC
Q 040620 181 LKPLVDVGGSTGTMARAIATA-----------------FPDTKCTVFACHL 214 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp~ 214 (214)
.-+|+|+||++|..+..+++. .|.+++..-|||.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~ 103 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQ 103 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCc
Confidence 568999999999988877766 5888899999984
No 396
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.32 E-value=0.15 Score=35.66 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
++.+..+||++++++. ..|.|.|..|...|++..... .++ -+...+|+.
T Consensus 35 ~~~s~~eLa~~l~l~~---stLsR~l~rLe~~GLV~r~~~-~D~--R~~v~LT~~ 83 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPM---SVLRRVLTQLQAAGLADVSVE-ADG--RGHASLTQE 83 (96)
T ss_dssp CCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEEC-TTS--CEEEEECHH
T ss_pred CCcCHHHHHHHhCCch---hhHHHHHHHHHHCCCEEeecC-CCC--ceeEEECHH
Confidence 7899999999999999 999999999999999998653 121 234566665
No 397
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=90.29 E-value=0.17 Score=44.44 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|+|+|||.|..++.+++. ..+++.+|+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~ 123 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIER 123 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEES
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEEC
Confidence 689999999999999999887 468888886
No 398
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=90.28 E-value=0.23 Score=37.58 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=25.3
Q ss_pred CCCcEEeecCCchH-HHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGT-MARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~v~Dl 212 (214)
...++||||||+|. .+..|++. -+..++..|+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDI 67 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDI 67 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECS
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEEC
Confidence 45799999999995 77777764 4677888885
No 399
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.18 E-value=0.11 Score=38.14 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALN----VHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g----~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|....+|+|..+|++.++ +++ ..+.++|+-|...|++....
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~---~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAY---TTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCH---HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCH---HHHHHHHHHHHHCCCEEEEe
Confidence 3445556655227899999999998 677 89999999999999999875
No 400
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=90.10 E-value=0.23 Score=41.80 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=29.5
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 212 (214)
.....+|+|+|||+|..+..+++.. +..+++.+|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~ 135 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDL 135 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeC
Confidence 3456799999999999999999985 5678888886
No 401
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=90.09 E-value=0.37 Score=30.33 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=42.1
Q ss_pred hhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 44 IINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 44 ~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.|++...+||+.|+|...+.+- ...+.-|..|.+.|-+.+.+ .+|++.|.
T Consensus 11 ll~s~~QGMTaGEVAA~f~w~L---e~ar~aLeqLf~~G~LRKRs--------SRYrlkph 60 (68)
T 3i71_A 11 LLTSVRQGMTAGEVAAHFGWPL---EKARNALEQLFSAGTLRKRS--------SRYRLKPH 60 (68)
T ss_dssp HHHHCTTCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC--------CEEEECC-
T ss_pred HHHHHhccccHHHHHHHhCCcH---HHHHHHHHHHHhcchhhhhc--------cccccCcc
Confidence 4444347899999999999988 88899999999999999995 79988775
No 402
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.02 E-value=0.18 Score=43.74 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 33 LKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 33 L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++..-+..|+++|..+ +++|..|||+++|+++ ..+.++++-|...|++.+.+
T Consensus 13 ~r~~n~~~il~~l~~~-~~~sr~~la~~~~ls~---~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAP---ASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHHSS-CSCCHHHHHHHTTCCH---HHHHHHHHHHHHHTSEEEC-
T ss_pred HHHhHHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEeec
Confidence 3444445578888877 8999999999999999 99999999999999999865
No 403
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=89.62 E-value=0.11 Score=37.15 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=38.8
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCC----CCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNV----HPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~----~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+..|+..|..+ +|+|..|||+.++. ++ ..+.++|+-|...|++....
T Consensus 12 q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~---~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 12 EWDVMNIIWDK-KSVSANEIVVEIQKYKEVSD---KTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHCCceEEEe
Confidence 34455566665 78999999999975 66 89999999999999999875
No 404
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=89.51 E-value=0.27 Score=41.23 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+++++||=||||.|..++.+++..|-.+++++|+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEI 115 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEI 115 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEES
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcC
Confidence 3578999999999999999999888888998886
No 405
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=89.37 E-value=0.27 Score=35.45 Aligned_cols=54 Identities=6% Similarity=0.136 Sum_probs=43.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
-.|.+.+.. .|.++.+||+.+++++ ..++++|+.|+..|.+.... .+.|-++..
T Consensus 10 ~~i~~~~~~--~p~~~~~la~~~~~~~---~~~~~~l~~l~~~G~l~~i~-------~~~~~~~~~ 63 (121)
T 2pjp_A 10 QKAEPLFGD--EPWWVRDLAKETGTDE---QAMRLTLRQAAQQGIITAIV-------KDRYYRNDR 63 (121)
T ss_dssp HHHGGGCSS--SCEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEE-------TTEEEEHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEEec-------CCceECHHH
Confidence 345566654 5779999999999999 99999999999999999887 455555444
No 406
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=89.16 E-value=0.15 Score=38.20 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=43.5
Q ss_pred cCcchhhhcCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeC
Q 040620 39 LRIPDIINNSG-QPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILL 101 (214)
Q Consensus 39 lglfd~L~~~~-~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~ 101 (214)
.-|++.|.+++ +++|++||.+.+ +++. .-++|.|+.|+..|++.+... +++ ..+|..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~---aTVYR~L~~L~e~Glv~~~~~--~~~-~~~Y~~ 82 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGL---ATVYRVLNQFDDAGIVTRHHF--EGG-KSVFEL 82 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTTSEEEEEC--GGG-CEEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHCCcEEEEEe--CCC-ceEEEe
Confidence 33677777655 689999999998 5676 899999999999999997642 111 346874
No 407
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.05 E-value=0.099 Score=42.77 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=46.3
Q ss_pred hcCcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 38 QLRIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 38 ~lglfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
+..|+..|..++ +++|..+||+.+++++ ..+.++++-|...|++......+|.- .-...+|+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i~~---~tvt~~v~rLe~~GlV~R~~~~~DrR-~~~i~LT~~ 223 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHHKY---PQTVRALNNLKKQGYLIKERSTEDER-KILIHMDDA 223 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSSCH---HHHHHHHHHHHHHTSSEEEECSSSTT-CEEEECCHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEEeeCCCCCCC-eEEEEECHH
Confidence 344666776653 3699999999999999 99999999999999999875321111 123566666
No 408
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=88.77 E-value=0.48 Score=40.58 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|+|+|||+|.+++.+++.. .+++.+|.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~ 243 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEI 243 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECC
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEEC
Confidence 3689999999999999998853 46777775
No 409
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.70 E-value=0.21 Score=43.72 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 33 LKRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 33 L~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++..-+..|+++|..+ +++|..|||+++|+++ ..+.++++-|...|++.+.+
T Consensus 36 ~r~~n~~~il~~l~~~-~~~sr~ela~~~gls~---~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK-GPISRIDLSKESELAP---ASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEecc
Confidence 5555666688888887 8999999999999999 99999999999999999864
No 410
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=88.60 E-value=0.43 Score=39.88 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred cCCCCcEEeecC------CchHHHHHHHHHCC-CCeEEEecCC
Q 040620 178 SKGLKPLVDVGG------STGTMARAIATAFP-DTKCTVFACH 213 (214)
Q Consensus 178 ~~~~~~vvDVGG------G~G~~~~~l~~~~P-~l~~~v~Dlp 213 (214)
.....+|||+|| |+|. ..+++..| +.+++.+|+-
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis 101 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLN 101 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECC
Confidence 455679999999 5577 55677777 6899999973
No 411
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=88.32 E-value=0.51 Score=44.19 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHhhcccccCCCCcEEeecCCchHHHHHHHHH
Q 040620 167 ASVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATA 201 (214)
Q Consensus 167 ~~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 201 (214)
+..++.... +.+..+|+|.+||+|+++++.+..
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHH
Confidence 444555555 456689999999999999987765
No 412
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=88.04 E-value=0.26 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=45.4
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLP 102 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t 102 (214)
..|++.|.. +|+++++|++++|++. ..+...|-.|.-.|++...+ ++.|+++
T Consensus 331 ~~vl~~l~~--~~~~~D~l~~~~gl~~---~~v~~~L~~LEl~G~v~~~~-------Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP--SPVGIDDLIRLSGISP---AVVRTILLELELAGRLERHG-------GSLVSLS 382 (382)
T ss_dssp HHHHHHCCS--SCEEHHHHHHHHCCCH---HHHHHHHHHHHHTTCCEECT-------TSEEEC-
T ss_pred HHHHHhhCC--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCcEEeCC-------CceEecC
Confidence 357888875 8999999999999999 99999999999999999987 6788764
No 413
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.78 E-value=0.27 Score=34.65 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=35.0
Q ss_pred HHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 040620 34 KRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAH 80 (214)
Q Consensus 34 ~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~ 80 (214)
..+.++||+..|.. +.+|-.|||+.+|++. ..+.|+=|.|-.
T Consensus 43 ~l~~R~~l~~~L~~--ge~TQREIA~~lGiS~---stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLR--GEMSQRELKNELGAGI---ATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHH--CCSCHHHHHHHHCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHHCCCh---hhhhHHHHHHHH
Confidence 34566889999987 7899999999999998 888888776644
No 414
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=87.43 E-value=0.41 Score=39.75 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=27.3
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecCC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFACH 213 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 213 (214)
....|||++||+|+.+.++++. +-+++++|+.
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~ 266 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELV 266 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESC
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCC
Confidence 4579999999999999998886 5688988874
No 415
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=87.27 E-value=0.11 Score=44.27 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+..|...|... +++|..|||+++++++ ..++|.|+.|...|++.... ....+|+. ++.+.
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~vs~---~Tv~r~l~~Le~~Glv~~~~--------~gi~LT~~----G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGITE---RVLRTETDVLKQLNLIEPSK--------SGMTLTER----GLEVY 81 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEe--------cceEEcHH----HHHHH
Confidence 34577777776 8999999999999999 99999999999999998553 45778888 77765
No 416
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=87.15 E-value=0.3 Score=41.05 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=28.4
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+.+..++||+||++|.++.-++++.+-..++.+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 45678999999999999999998766556666665
No 417
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=87.10 E-value=0.41 Score=33.50 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=36.8
Q ss_pred CcchhhhcCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSGQPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.|...|... +.+ |..+||+.+|++. ..+++-|+.|...|++....
T Consensus 32 ~I~~~l~~g-~~lps~~eLa~~lgVSr---~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDGN-EGLLVASKIADRVGITR---SVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBTT-EEEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcCC-CcCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEe
Confidence 334455542 455 9999999999998 99999999999999998764
No 418
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=86.97 E-value=0.92 Score=34.24 Aligned_cols=88 Identities=7% Similarity=-0.012 Sum_probs=55.7
Q ss_pred cCcchhhhcC-CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeecCCCC----CCccceeeCCCCCccccccc
Q 040620 39 LRIPDIINNS-GQPMTLTQIIVALN-VHPNKTRCTQILVCLLAHSGFFVQQKDGKN----EQEEESILLPPHLDFFSRIS 112 (214)
Q Consensus 39 lglfd~L~~~-~~p~t~~eLA~~~g-~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~----~~~~~~y~~t~~~~~~s~~l 112 (214)
+.|+..|-.+ .+..|+++|++.++ +++ ..+++-|+.|+..|++.+.....+ +.-...|.+|+. ++.+
T Consensus 32 ~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~---aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~----Gr~~ 104 (151)
T 3u1d_A 32 LDVLHQILAQPDGVLSVEELLYRNPDETE---ANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGE----GIAL 104 (151)
T ss_dssp HHHHHHHHHSTTSCBCHHHHHHHCTTSCH---HHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHH----HHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHhcCCCCH---HHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHH----HHHH
Confidence 3344444432 15689999999999 998 999999999999999997642100 000125777777 5554
Q ss_pred cccchHHHHHHhhccchh-hhhHhHHHhhcC
Q 040620 113 LQLQGSTILLLIADATFT-TSFHFLSTWLQN 142 (214)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~lr~ 142 (214)
+ .. .+.... ..|..+.+.+.+
T Consensus 105 l--------~~-y~~la~~~alr~l~~~v~~ 126 (151)
T 3u1d_A 105 L--------RA-VSMYEEAAVWRSVYEQMER 126 (151)
T ss_dssp H--------HH-TTCSTHHHHTHHHHHHSCC
T ss_pred H--------HH-hHHHhHHHHHHHHHHHhhc
Confidence 3 11 111222 567777777743
No 419
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=86.74 E-value=0.34 Score=41.06 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=45.6
Q ss_pred cCcchhhhc-CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINN-SGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~-~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
..|+++|.+ .+.++|.++||+++|++. ..+++-++.|...|+..+... ..-|++.+.
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr---~aV~k~i~~L~~~G~~i~~~~------~~GY~L~~~ 63 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISR---TAVKKVIDQLKLEGCKIDSVN------HKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCH---HHHHHHHHHHHHTTCEEEEET------TTEEEEEEC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCH---HHHHHHHHHHHhcCCeEEEeC------CCeEEEecC
Confidence 346677743 236899999999999999 999999999999999777532 467887765
No 420
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=85.95 E-value=0.24 Score=42.79 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.2
Q ss_pred CCCCcEEeecCCchHHHHH--------HHHH--------CCCCeEEEecCCC
Q 040620 179 KGLKPLVDVGGSTGTMARA--------IATA--------FPDTKCTVFACHL 214 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~--------l~~~--------~P~l~~~v~Dlp~ 214 (214)
++.-+|+|+||++|..+.. +.++ .|..++..-|||.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~ 101 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPG 101 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTT
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCc
Confidence 3456899999999975543 3322 5778889999984
No 421
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=85.78 E-value=0.74 Score=37.67 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=33.2
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+.+.+. +....+|||+||++|.++.-.+....-.++..+|+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdv 110 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTK 110 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEec
Confidence 44555553 55667999999999999998877776667888876
No 422
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=85.39 E-value=0.82 Score=36.91 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=38.6
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-|.-.|.. ++.|+++||+.+|+++ .-+...|.-|...|++....
T Consensus 169 ~l~~~l~~--~~~t~~~la~~~~l~~---~~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 169 ILHYLLLN--GRATVEELSDRLNLKE---REVREKISEMARFVPVKIIN 212 (232)
T ss_dssp HHHHHHHS--SEEEHHHHHHHHTCCH---HHHHHHHHHHTTTSCEEEET
T ss_pred HHHHHHhc--CCCCHHHHHHHhCcCH---HHHHHHHHHHHhcCCeEEec
Confidence 34555665 8999999999999999 99999999999999998765
No 423
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=85.31 E-value=0.79 Score=43.81 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=28.7
Q ss_pred CCCCcEEeecCCchHHHHHHHHHCCC---CeEEEecC
Q 040620 179 KGLKPLVDVGGSTGTMARAIATAFPD---TKCTVFAC 212 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dl 212 (214)
....+|+|.|||+|.++.+++++.++ .++.++|+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEI 356 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDI 356 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECS
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEEC
Confidence 35679999999999999999998873 46888876
No 424
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.25 E-value=0.3 Score=33.98 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=40.6
Q ss_pred hcCcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 38 QLRIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 38 ~lglfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+.-|+.++.++| .+++..+|+.+++++. ..+.+.|..|...+++....
T Consensus 39 E~lVy~~I~~aGn~GIw~kdL~~~tnL~~---~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 39 EKLVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCH---HHHHHHHHHHHhCCCEEEec
Confidence 344566776642 6799999999999999 99999999999999999875
No 425
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=85.23 E-value=0.2 Score=40.04 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+++|..++|+++++++ ..+.+.++.|...|+|..... .- ...+.+|+. ++.+.
T Consensus 26 ~~~s~s~aA~~L~isq---~avSr~I~~LE~~~L~~R~~~---~R-~~~v~LT~~----G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGISQ---QSASRIIIDLEKNGYITRTVT---KR-GQILNITEK----GLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEEEE---TT-EEEEEECHH----HHHHH
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEEEc---CC-eEEEEECHH----HHHHH
Confidence 6799999999999999 999999999999999998731 00 256888888 77765
No 426
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=85.05 E-value=0.9 Score=29.59 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-.|++.|..+ ||.++=.||+.+|+.. +..+++.|-.|...|++..+.
T Consensus 13 e~I~~fL~~~-Gp~~AL~IAK~LGlkt--AK~VNp~LY~m~~~~lL~~De 59 (72)
T 3eyi_A 13 EDIYRFLKDN-GPQRALVIAQALGMRT--AKDVNRDLYRMKSRHLLDMDE 59 (72)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHTTCCS--GGGTHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHc-CCchHHHHHHHhCcch--hhhcCHHHHHHHHccCcCCCC
Confidence 3467788877 9999999999999965 245999999999999997664
No 427
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=84.65 E-value=1 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCCCcEEeecCCchHHHHHHH-HHCCC-CeEEEec
Q 040620 179 KGLKPLVDVGGSTGTMARAIA-TAFPD-TKCTVFA 211 (214)
Q Consensus 179 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~v~D 211 (214)
.+..+++|||++.|.++..++ +..|+ .+++.|+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afE 259 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE 259 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence 467899999999999999988 67776 6788776
No 428
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=84.48 E-value=0.51 Score=37.64 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.+.+..+||+++++++ ..+.++++.|...|++.... ...+.+|+. ++.+.
T Consensus 23 ~~~~~~~la~~l~vs~---~tvs~~l~~Le~~GlV~r~~-------~~~v~LT~~----G~~~~ 72 (226)
T 2qq9_A 23 VTPLRARIAERLEQSG---PTVSQTVARMERDGLVVVAS-------DRSLQMTPT----GRTLA 72 (226)
T ss_dssp CCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECT-------TSBEEECHH----HHHHH
T ss_pred CCccHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEeC-------CCCeEECHH----HHHHH
Confidence 3446699999999999 99999999999999999986 567999999 88775
No 429
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=84.42 E-value=0.73 Score=32.59 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|++. ..+++-++.|...|++....
T Consensus 31 ~~lPs~~~La~~~~vSr---~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINP---LTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEec
Confidence 445 8999999999999 99999999999999998775
No 430
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.38 E-value=0.36 Score=38.58 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=42.3
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 52 MTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 52 ~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
.+..+||+++++++ ..+.+.++.|...|++.... ...+.+|+. ++.+.
T Consensus 25 ~~~~~La~~l~vs~---~tvs~~l~~Le~~GlV~r~~-------~~~v~LT~~----G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQSG---PTVSQTVSRMERDGLLRVAG-------DRHLELTEK----GRALA 72 (230)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECT-------TSCEEECHH----HHHHH
T ss_pred CcHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEeC-------CccEEECHH----HHHHH
Confidence 34599999999999 99999999999999999986 567889998 77765
No 431
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=83.90 E-value=0.77 Score=38.69 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=32.0
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+.+.+. +.....|||+||++|.++.-++....-.++..+|+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv 126 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK 126 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence 34445544 55566999999999999997777766557888876
No 432
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=83.88 E-value=0.9 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=28.4
Q ss_pred hhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCce
Q 040620 43 DIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFF 84 (214)
Q Consensus 43 d~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l 84 (214)
.++..+ +++|++||++.+ +++. .-++|.|. ..|++
T Consensus 12 ~ll~~~-~~~t~~el~~~l~~~~~~vs~---~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 12 EIITSN-EIETQDELVDMLKQDGYKVTQ---ATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHS-CCCSHHHHHHHHHHTTCCCCH---HHHHHHHH---HHTCE
T ss_pred HHHHcC-CCCCHHHHHHHHHHhCCCcCH---HHHHHHHH---HcCCE
Confidence 345554 789999999999 9988 88888887 66887
No 433
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.63 E-value=0.76 Score=38.48 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee-ee
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFV-QQ 87 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~-~~ 87 (214)
+++|.+|||+++|+++ ..++|.|..|...|++. ..
T Consensus 20 ~~~~~~ela~~l~vS~---~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGIYR---TTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEEEe
Confidence 7899999999999999 99999999999999997 54
No 434
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=83.53 E-value=1.1 Score=32.59 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=33.0
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|+++ ..+++-++.|...|++...+
T Consensus 26 ~~LPse~~La~~~gvSr---~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINP---ATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp SCBCCHHHHHHHTTCCH---HHHHHHHHHHHTTTSEEEET
T ss_pred CcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEEec
Confidence 556 8999999999998 89999999999999998876
No 435
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=83.45 E-value=1.2 Score=38.29 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=25.4
Q ss_pred CCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 181 LKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 181 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..+|||||.|.|.+...|+++..--+++++++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~ 90 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK 90 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEec
Confidence 47899999999999999999744345666553
No 436
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=83.41 E-value=0.45 Score=35.35 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=37.6
Q ss_pred cCcchhhhcCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVAL-----NVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~-----g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.-|++.|.++ ++.|++||.+.+ ++++ .-++|.|+.|+..|++.+..
T Consensus 22 ~~Il~~l~~~-~h~ta~ei~~~l~~~~~~is~---~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 22 QLVLEAVDTL-EHATPDDILGEVRKTASGINI---STVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHH-SSBCHHHHHHHHHTTCTTCCH---HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHHhhCCCCCH---hHHHHHHHHHHHCCcEEEEE
Confidence 3366777766 489999999987 4566 79999999999999998865
No 437
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=83.03 E-value=1.1 Score=41.99 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=26.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
..++|||+|||+|.+++.+++... .+++.+|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~ 570 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDM 570 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEES
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeC
Confidence 467999999999999999998532 35888886
No 438
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=82.50 E-value=0.57 Score=41.16 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=47.4
Q ss_pred CcchhhhcC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCccccccc
Q 040620 40 RIPDIINNS-GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRIS 112 (214)
Q Consensus 40 glfd~L~~~-~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l 112 (214)
.|+..|.++ ++++|..|||+++++++ ..+.|+++-|...|++.+....+|.- .-...+|+. ++.+
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~---~~~t~~~~~le~~g~v~r~~~~~D~R-~~~i~lT~~----g~~~ 473 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKP---YYLTKALQKLKDLKLLSKKRSLQDER-TVIVYVTDT----QKAN 473 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCH---HHHHHHHHHHHTTTTSCCEECCSSSS-CCEEECCSS----HHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEeecCCCCCCC-eEEEEECHH----HHHH
Confidence 355566553 26799999999999999 99999999999999998765321111 234677777 5554
No 439
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=81.96 E-value=0.98 Score=34.23 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=42.2
Q ss_pred hcCcchhhhcCCCCCCHHHHHHHc-------CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCC
Q 040620 38 QLRIPDIINNSGQPMTLTQIIVAL-------NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLP 102 (214)
Q Consensus 38 ~lglfd~L~~~~~p~t~~eLA~~~-------g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t 102 (214)
+.-|++.|.+++++.|++||.+.+ +++. .-++|.|+.|+..|++.+... +++ ..+|..+
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~---aTVYRtL~~L~e~Glv~~i~~--~~~-~~~Y~~~ 100 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGI---ATVYRTLNLLEEAEMVTSISF--GSA-GKKYELA 100 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCH---HHHHHHHHHHHHTTSEEECC--------CCEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHCCCEEEEEe--CCC-ceEEEeC
Confidence 344677777665899999998866 3555 799999999999999998742 111 3467654
No 440
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.87 E-value=0.46 Score=38.72 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=47.3
Q ss_pred cchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 41 IPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 41 lfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+...|.+.+ +++|..|||+++++++ ..+.++++-|...|++......+|.= .-...+|+. ++.+.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~---~t~t~~l~rLe~~G~i~R~~~~~DrR-~~~i~LT~~----G~~~~ 104 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQ---SDLVQHIKVLVKHSYISKVRSKIDER-NTYISISEE----QREKI 104 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCG---GGTHHHHHHHHHTTSCEEEECSSSTT-SEEEECCHH----HHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCH---hhHHHHHHHHHHCCCEEecCCCCCCC-eEEEEECHH----HHHHH
Confidence 455565532 5899999999999999 99999999999999998765321110 123667777 66654
No 441
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=81.82 E-value=1 Score=32.51 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=33.1
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|+++ ..+++-++.|...|++....
T Consensus 33 ~~lPse~~La~~~~vSr---~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 33 DQLPSVRETALQEKINP---NTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp CEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEec
Confidence 456 9999999999998 89999999999999998876
No 442
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=81.72 E-value=1.5 Score=31.60 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|+++ .-+++-+..|...|++....
T Consensus 35 ~~Lps~~~La~~~~vSr---~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNP---NTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp CBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCeEEEec
Confidence 455 6999999999999 99999999999999999875
No 443
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=81.72 E-value=0.51 Score=37.36 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
+|++..+||+++++.+ ..++..++.|...|++...+ +...+|+. ++.+.
T Consensus 29 ~~V~~~~LA~~LgvS~---~SV~~~lkkL~e~GLV~~~~--------~Gv~LTe~----G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLELGE---GSVRTLLRKLSHLDIIRSKQ--------RGHFLTLK----GKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEC----------CEEECHH----HHHHH
T ss_pred CCccHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEEeC--------CCeEECHH----HHHHH
Confidence 6899999999999999 99999999999999999884 56777777 66543
No 444
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=81.05 E-value=1.2 Score=38.82 Aligned_cols=33 Identities=12% Similarity=-0.075 Sum_probs=28.1
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCC-CeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPD-TKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl 212 (214)
+..+|||+++|+|.+++.++++.++ .+++..|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi 85 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDI 85 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECS
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEEC
Confidence 4579999999999999999998776 46788775
No 445
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=80.78 E-value=0.44 Score=34.17 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=51.5
Q ss_pred HHHHHHhcCcchhhhcCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceeeecCC-CCCCccceeeCCCC
Q 040620 32 SLKRAIQLRIPDIINNSGQPMTLTQIIVALN------VHPNKTRCTQILVCLLAHSGFFVQQKDG-KNEQEEESILLPPH 104 (214)
Q Consensus 32 ~L~~a~~lglfd~L~~~~~p~t~~eLA~~~g------~~~~~~~~l~rlLr~L~~~g~l~~~~~~-~~~~~~~~y~~t~~ 104 (214)
.++-.+++-|..+|.. +|++.-+|++.+. +++ ..+...|+-|...|++...... .++.....|++|+.
T Consensus 10 l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~---gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~ 84 (117)
T 3elk_A 10 ILHGLITLYILKELVK--RPMHGYELQKSMFETTGQALPQ---GSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDA 84 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCT---THHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHH
T ss_pred HHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence 3344445556667776 8999999999886 777 9999999999999999865321 11111245888888
Q ss_pred Ccccccccc
Q 040620 105 LDFFSRISL 113 (214)
Q Consensus 105 ~~~~s~~l~ 113 (214)
++..+
T Consensus 85 ----G~~~l 89 (117)
T 3elk_A 85 ----GKKFL 89 (117)
T ss_dssp ----HHHHH
T ss_pred ----HHHHH
Confidence 76654
No 446
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=80.59 E-value=0.93 Score=32.42 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=49.4
Q ss_pred HHHHhcCcchhhhcCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeeecCC-CCCCccceeeCCCCCc
Q 040620 34 KRAIQLRIPDIINNSGQPMTLTQIIVAL------NVHPNKTRCTQILVCLLAHSGFFVQQKDG-KNEQEEESILLPPHLD 106 (214)
Q Consensus 34 ~~a~~lglfd~L~~~~~p~t~~eLA~~~------g~~~~~~~~l~rlLr~L~~~g~l~~~~~~-~~~~~~~~y~~t~~~~ 106 (214)
+-.+++=|..+|.. +|++--+|++.+ ++++ ..+...|+-|...|++...... .++.....|++|+.
T Consensus 9 ~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~---gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~-- 81 (117)
T 4esf_A 9 KGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEVVE---GTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEA-- 81 (117)
T ss_dssp HHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCH---HHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHH--
T ss_pred HChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCc---cHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHH--
Confidence 33344445556666 899999999998 6787 9999999999999999875321 01111245888888
Q ss_pred ccccccc
Q 040620 107 FFSRISL 113 (214)
Q Consensus 107 ~~s~~l~ 113 (214)
++..+
T Consensus 82 --G~~~l 86 (117)
T 4esf_A 82 --GRQEL 86 (117)
T ss_dssp --HHHHH
T ss_pred --HHHHH
Confidence 66654
No 447
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=80.49 E-value=1.6 Score=37.85 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=29.3
Q ss_pred cCCCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 178 SKGLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 178 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
+....++||+|+++|.++..++++ +.+++.+|.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~ 241 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDN 241 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEh
Confidence 456789999999999999999998 688999985
No 448
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=80.26 E-value=1.7 Score=33.27 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|++..|...|++....
T Consensus 169 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 169 KITHETIANHLGSHR---EVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEeCC
Confidence 899999999999999 99999999999999998774
No 449
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=80.21 E-value=2.1 Score=36.67 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=36.2
Q ss_pred HHHHhhcccccCCCCcEEeecCCchHHHHHHHHHC-CCCeEEEecCC
Q 040620 168 SVLIEDCNEVSKGLKPLVDVGGSTGTMARAIATAF-PDTKCTVFACH 213 (214)
Q Consensus 168 ~~~l~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp 213 (214)
..+++.+. ......+||..+|.|..+..|+++. |+.+++.+|.-
T Consensus 47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~D 91 (347)
T 3tka_A 47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRD 91 (347)
T ss_dssp HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECC
Confidence 45566665 4556799999999999999999985 88999999963
No 450
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=80.10 E-value=1.2 Score=40.38 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=19.6
Q ss_pred CCCcEEeecCCchHHHHHHHHHC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAF 202 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~ 202 (214)
...+|+|.+||+|.++..+++..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l 191 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYV 191 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHH
T ss_pred CCCeEecCCcccchHHHHHHHHH
Confidence 45699999999999999888753
No 451
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=79.94 E-value=1.5 Score=38.15 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 212 (214)
++++||=||||.|..++++++. |..+++++|+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEI 236 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEI 236 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEES
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEcc
Confidence 3689999999999999999974 6678888876
No 452
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=79.45 E-value=1.5 Score=33.21 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=33.0
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|.+..|...|++....
T Consensus 164 ~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSR---EMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEecC
Confidence 689999999999999 99999999999999998774
No 453
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=79.27 E-value=1.4 Score=31.99 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|+++ .-+++-++.|...|++....
T Consensus 36 ~~LPser~La~~~gVSr---~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 36 EKILSIREFASRIGVNP---NTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp CEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEEEc
Confidence 445 7889999999999 99999999999999998776
No 454
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=79.10 E-value=1.6 Score=33.14 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=33.2
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|+|..|...|++....
T Consensus 167 ~~t~~~iA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVGCSR---ETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEEeCC
Confidence 689999999999999 99999999999999999874
No 455
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=78.78 E-value=1.7 Score=33.05 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|.|..|...|++....
T Consensus 145 ~~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 145 LKATHDELAAAVGSVR---ETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp EECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEeCC
Confidence 3689999999999999 99999999999999999774
No 456
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=78.78 E-value=0.83 Score=41.87 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=46.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHh-----CCceeeecCCCCCCccceeeCCCC
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAH-----SGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~-----~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
.-|+..|..+ +.+|..+||+.+++++ +.+++.|+.|.. .|++...+ +.|.+++.
T Consensus 433 ~~iL~~l~~~-~~it~~~la~~l~~s~---~~~~~~L~~L~~~~~~~~glie~~g--------~~y~L~~~ 491 (583)
T 3lmm_A 433 AIVLYLLFQR-PFITIDVVARGLQSGK---EAARNALEAARQTTVAGAPLIIAHD--------GVWLLGNA 491 (583)
T ss_dssp HHHHHHHHHS-SSBCHHHHHHHHTSCH---HHHHHHHHHHHTCEETTEESEEEET--------TEEEECHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHhCcCH---HHHHHHHHHHHhhhccccceEEEeC--------CEEEECHH
Confidence 3466777776 7899999999999999 999999999999 88999884 68998886
No 457
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=78.72 E-value=1.1 Score=31.84 Aligned_cols=73 Identities=8% Similarity=0.090 Sum_probs=50.5
Q ss_pred HHHHHHhcCcchhhhcCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeecCC-CCCCccceeeCC
Q 040620 32 SLKRAIQLRIPDIINNSGQPMTLTQIIVAL--------NVHPNKTRCTQILVCLLAHSGFFVQQKDG-KNEQEEESILLP 102 (214)
Q Consensus 32 ~L~~a~~lglfd~L~~~~~p~t~~eLA~~~--------g~~~~~~~~l~rlLr~L~~~g~l~~~~~~-~~~~~~~~y~~t 102 (214)
.++-.+++=|..+|.+ +|.+--+|++.+ ++++ ..+.+.|+-|...|++...... .++.....|.+|
T Consensus 8 ~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~---gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT 82 (116)
T 3f8b_A 8 MLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNE---ATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLT 82 (116)
T ss_dssp HHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCH---HHHHHHHHHHHHTTSEEEEEEC----CCEEEEEEC
T ss_pred HHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHCCCEEEEeeccCCCCCceEEEEC
Confidence 3344445555667776 899999999887 6777 8999999999999999865311 111112358888
Q ss_pred CCCcccccccc
Q 040620 103 PHLDFFSRISL 113 (214)
Q Consensus 103 ~~~~~~s~~l~ 113 (214)
+. ++..+
T Consensus 83 ~~----G~~~l 89 (116)
T 3f8b_A 83 EI----GHENM 89 (116)
T ss_dssp HH----HHHHH
T ss_pred HH----HHHHH
Confidence 88 66654
No 458
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=78.37 E-value=0.67 Score=26.60 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLL 78 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L 78 (214)
.++|..+||+.+|+++ ..+.++++..
T Consensus 20 ~g~s~~~IA~~lgis~---~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSR---HCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHhhH
Confidence 4589999999999998 8899987643
No 459
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=78.31 E-value=1.9 Score=33.36 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|+|..|...|++....
T Consensus 174 ~~~t~~~iA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 174 LPLGTQDIMARTSSSR---ETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp ECCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECS
T ss_pred cCCCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEEecC
Confidence 4789999999999999 99999999999999999874
No 460
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.17 E-value=2.2 Score=33.01 Aligned_cols=36 Identities=3% Similarity=-0.022 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|.+..|...|++....
T Consensus 179 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 179 IYLSREELATLSNMTV---SNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCCCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEEEET
T ss_pred cccCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEeeCC
Confidence 5789999999999999 99999999999999998874
No 461
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=78.12 E-value=0.76 Score=35.23 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=47.5
Q ss_pred cCcchhhhcCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeecCCCCC-CccceeeCCCCCcccc
Q 040620 39 LRIPDIINNSGQPMTLTQIIVAL--------NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNE-QEEESILLPPHLDFFS 109 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~--------g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~-~~~~~y~~t~~~~~~s 109 (214)
+-|..+|.. +|++.-||++.+ ++++ ..+.+.|+-|...|+++......++ .....|.+|+. +
T Consensus 5 ~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~---~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~----G 75 (179)
T 1yg2_A 5 HVILTVLST--RDATGYDITKEFSASIGYFWKASH---QQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA----G 75 (179)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCH---HHHHHHHHHHHHTTSEEECCC---------CEEECHH----H
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCc---CcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH----H
Confidence 345667776 899999999998 5777 8999999999999999865421111 11346999998 7
Q ss_pred cccc
Q 040620 110 RISL 113 (214)
Q Consensus 110 ~~l~ 113 (214)
+..+
T Consensus 76 ~~~l 79 (179)
T 1yg2_A 76 RSAL 79 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 462
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=78.08 E-value=1.9 Score=34.47 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=36.1
Q ss_pred hhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 44 IINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 44 ~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.|.. |..++..+||+.+|++. .-+++-|+.|...|++...+
T Consensus 43 ~l~p-G~~L~e~~La~~lgVSr---~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 43 SLPS-GTALRQQELATLFGVSR---MPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp SSCT-TCBCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCC-cCeeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEeC
Confidence 3443 37789999999999999 99999999999999999885
No 463
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=78.00 E-value=0.17 Score=43.35 Aligned_cols=60 Identities=10% Similarity=-0.019 Sum_probs=46.9
Q ss_pred HHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCC
Q 040620 36 AIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPH 104 (214)
Q Consensus 36 a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~ 104 (214)
-.+..++-.|-.. ++.|+.|||+.+|++. ..+++.|+.|...|++..... . +..|...+-
T Consensus 18 ~~ea~vY~~Ll~~-g~~t~~eia~~~gv~~---~~Vy~~L~~L~~~GlV~~~~g----~-p~~y~av~p 77 (342)
T 3qph_A 18 KYEILTYWTLLVY-GPSTAKEISTKSGIPY---NRVYDTISSLKLRGFVTEIEG----T-PKVYAAYSP 77 (342)
T ss_dssp HHTTSCSHHHHHH-HHHHHSCCSSSTTSSS---CSCCHHHHHHHHHTSEEEECC----T-TCEEEECCH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEEEcC----c-eeEEEEcCH
Confidence 4456677666555 8999999999999999 999999999999999987741 1 455664444
No 464
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=77.96 E-value=1.7 Score=33.20 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|.+..|...|++....
T Consensus 162 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 162 FQIRHHELAALAGTSR---ETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEecC
Confidence 4689999999999999 99999999999999999874
No 465
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=77.94 E-value=2.2 Score=32.96 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|.|..|...|++....
T Consensus 176 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASR---ETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEEecC
Confidence 4789999999999999 99999999999999999874
No 466
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=77.79 E-value=0.45 Score=43.64 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=0.0
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
--|.++|..+ +.+|..+|++.||+++ ..++++|+-|+..|.+...+
T Consensus 519 ~~I~~~l~~~-g~it~~di~~l~~ls~---~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 519 NAAMLWLSEV-GDLATSDLMAMCGVSR---GTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEEeC
Confidence 3478888887 8999999999999999 89999999999999998875
No 467
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=77.76 E-value=1.3 Score=37.75 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 44 IINNSGQPMTLTQIIVAL--NVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 44 ~L~~~~~p~t~~eLA~~~--g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+|... +|+++.+||+++ ++++ .-+|+-|..|...|++.+.-
T Consensus 30 yl~~~-~pV~s~~La~~~~l~VS~---aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 30 YIENK-KPVSSQRVLEVSNIEFSS---ATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp HHHHC-SCBCHHHHHHHSCCCSCH---HHHHHHHHHHHHTTSEECCS
T ss_pred HHHcC-CCccHHHHHHHhCCCCCH---HHHHHHHHHHHHCCCEEEcc
Confidence 56665 999999999999 8898 99999999999999999763
No 468
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=77.73 E-value=1.8 Score=33.32 Aligned_cols=35 Identities=6% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|+|-++||+.+|+++ ..+.|.|..|...|++....
T Consensus 187 ~lt~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVGCSR---EMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEEECC
Confidence 589999999999999 99999999999999999874
No 469
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=77.57 E-value=2.2 Score=33.52 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|+|..|...|++....
T Consensus 192 ~~lt~~~lA~~lG~sr---~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTR---VTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred ccCCHHHHHHHHCCcH---HHHHHHHHHHHHCCCEEEcC
Confidence 4789999999999999 99999999999999999874
No 470
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=77.55 E-value=1.3 Score=33.36 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=39.7
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.|.++|. . ||.|..+||+++|++- -..+-.|..|.-.|++.+..
T Consensus 15 ~ILE~Lk-~-G~~~t~~Iak~LGlSh---g~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 15 DILALLA-D-GCKTTSLIQQRLGLSH---GRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHT-T-CCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHH-h-CCccHHHHHHHhCCcH---HHHHHHHHHHHhcCceEEEE
Confidence 4667788 4 9999999999999998 89999999999999999886
No 471
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=77.06 E-value=0.21 Score=37.74 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=36.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 040620 39 LRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ 86 (214)
Q Consensus 39 lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 86 (214)
..|.+.|..+ +.+|..+||+++|+++ ..+++-++.|...|++..
T Consensus 16 ~~Il~~l~~~-~~ls~~eLa~~lgvSr---~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 16 RNILNELQKD-GRISNVELSKRVGLSP---TPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHC-SSCCTTGGGTSSSCCT---TTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEE
Confidence 3455556654 7899999999999999 888999999999999973
No 472
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=76.68 E-value=1.6 Score=33.10 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|.|..|...|++....
T Consensus 139 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 139 TVSHEEIADATASIR---ESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp ECCHHHHHHTTTSCH---HHHHHHHHHHHHHTSEEEET
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEecC
Confidence 689999999999999 99999999999999999874
No 473
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=76.36 E-value=2.4 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|++..|...|++....
T Consensus 176 ~~~t~~~iA~~lG~sr---~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHH---VTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECS
T ss_pred CCCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCeEeCC
Confidence 4789999999999999 99999999999999999874
No 474
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=76.30 E-value=0.15 Score=35.96 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=46.7
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVAL----NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFSRIS 112 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~----g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l 112 (214)
+++-|...|.. +|++--+|++.+ ++++ ..+.+.|+-|...|++.......++.....|.+|+. ++..
T Consensus 10 l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~---~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~----G~~~ 80 (108)
T 3l7w_A 10 IEYLILAIVSK--HDSYGYDISQTIKLIASIKE---STLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDS----GEKH 80 (108)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCH---HHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHH----HHHH
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCc---ChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHH----HHHH
Confidence 34445556666 788888888774 7888 999999999999999987542111100124888888 6665
Q ss_pred c
Q 040620 113 L 113 (214)
Q Consensus 113 ~ 113 (214)
+
T Consensus 81 l 81 (108)
T 3l7w_A 81 L 81 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 475
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=75.62 E-value=3.1 Score=30.03 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 040620 34 KRAIQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLA 79 (214)
Q Consensus 34 ~~a~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~ 79 (214)
..+-++.|+..|.. | +|..|||+.+|+++ .-+.|+-+.|-
T Consensus 61 aLs~R~eV~klL~~--G-~syreIA~~~g~S~---aTIsRv~r~L~ 100 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ--G-YTYATIEQESGAST---ATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHHHHH--T-CCHHHHHHHHCCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--C-CCHHHHHHHHCCCH---HHHHHHHHHHh
Confidence 44455788999986 4 99999999999998 88888777663
No 476
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=75.45 E-value=1.3 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFV 85 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~ 85 (214)
.++|+++||+.+|+++ +.|.|+++......+-.
T Consensus 22 ~~~~~~~lA~~~~~S~---~~l~r~fk~~~G~s~~~ 54 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSR---RQLERLFKQYLGTVPSK 54 (113)
T ss_dssp SCCCHHHHHHHHTSCH---HHHHHHHHHHTSSCHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHCcCHHH
Confidence 6799999999999999 99999877665554443
No 477
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=75.43 E-value=1.9 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCCcEEeecCCchHHHHHHHHH-------CCC-----CeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATA-------FPD-----TKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 212 (214)
+..+|+|||.|.|..+..+++. .|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 3469999999999998887765 785 57887774
No 478
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=75.17 E-value=2.9 Score=29.57 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHhcCcchhhhcCCCCCCHHHHHHHcC---C-C-CCCc-ccHHHHHHHHHhCCceeeecCCCCCCccceeeCCCCCcccc
Q 040620 36 AIQLRIPDIINNSGQPMTLTQIIVALN---V-H-PNKT-RCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPPHLDFFS 109 (214)
Q Consensus 36 a~~lglfd~L~~~~~p~t~~eLA~~~g---~-~-~~~~-~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~~~~~~s 109 (214)
..++-|..+|.. +|++.-+|++.+. . . .... ..+.+.|+-|...|++.......++.....|.+|+. +
T Consensus 13 ~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~----G 86 (118)
T 2esh_A 13 WLASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQ----G 86 (118)
T ss_dssp HHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHH----H
T ss_pred hHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChH----H
Confidence 344555666766 7999999999983 1 1 0134 579999999999999987642111111345888888 7
Q ss_pred cccc
Q 040620 110 RISL 113 (214)
Q Consensus 110 ~~l~ 113 (214)
+.++
T Consensus 87 ~~~l 90 (118)
T 2esh_A 87 KLYL 90 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 479
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=74.94 E-value=4.1 Score=31.78 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTR-CTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~-~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ + .+.|+|..|...|++....
T Consensus 169 ~~t~~~lA~~lG~sr---~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAH---SSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCC---HHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCCh---HHHHHHHHHHHHHCCCEEecC
Confidence 799999999999998 8 9999999999999999884
No 480
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=74.62 E-value=2.6 Score=33.71 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 41 IPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 41 lfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|+..|+ .|.|.|+++||+.+|++. +.+ ...|..++.+..++
T Consensus 27 llr~la-~Grpv~~~~LA~~~g~~~---~~v---~~~L~~l~~~~~D~ 67 (220)
T 3f2g_A 27 LLRELA-KGRPVSRTTLAGILDWPA---ERV---AAVLEQATSTEYDK 67 (220)
T ss_dssp HHHHHT-TTSCBCHHHHHHHHTCCH---HHH---HHHHHHCTTCEECT
T ss_pred HHHHHh-cCCCCCHHHHHHHhCcCH---HHH---HHHHHhCCcEEECC
Confidence 456677 469999999999999998 555 55555666677665
No 481
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=74.61 E-value=1.9 Score=33.14 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
-++|-++||+.+|+++ ..+.|.+..|...|++....
T Consensus 177 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQP---ETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp CCSCTHHHHHHTTSCH---HHHHHHHHHHHHHTSEEESS
T ss_pred ecCCHHHHHHHhCCCH---HHHHHHHHHHHHCCcEEecC
Confidence 4789999999999999 99999999999999998874
No 482
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=74.14 E-value=2.4 Score=33.05 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|.|..|...|++....
T Consensus 186 ~~t~~~lA~~lG~sr---~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 186 KVKMDDLARCLDDTR---LNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSCEEET
T ss_pred cCCHHHHHHHhCCCh---hHHHHHHHHHHHCCCEEecC
Confidence 689999999999999 99999999999999998874
No 483
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=74.14 E-value=2.1 Score=32.98 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|.+..|...|++....
T Consensus 163 ~~t~~~lA~~lG~sr---~tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 163 DFTVEEIANLIGSSR---QTTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp CCCHHHHHHHHCSCH---HHHHHHHHHHHHTTSSEECS
T ss_pred cCCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEEEcC
Confidence 589999999999999 99999999999999998875
No 484
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=73.62 E-value=3 Score=35.36 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCCcEEeecCCchHHHHHHHHHCCCCeEEEecCCC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAFPDTKCTVFACHL 214 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 214 (214)
+.+.||.+|||-.+....+...+|+++++-+|+|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~ 131 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE 131 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHH
Confidence 46899999999999999999999999999999873
No 485
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=73.47 E-value=1.6 Score=39.67 Aligned_cols=33 Identities=9% Similarity=-0.146 Sum_probs=27.5
Q ss_pred CCCcEEeecCCchHHHHHHHHHC---CCCeEEEecC
Q 040620 180 GLKPLVDVGGSTGTMARAIATAF---PDTKCTVFAC 212 (214)
Q Consensus 180 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dl 212 (214)
...+|+|.+||+|.++.++++.. +..++.++|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Ei 256 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQEL 256 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEES
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEEC
Confidence 45699999999999999999885 3567888875
No 486
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=73.14 E-value=2 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 49 GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 49 ~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|..++-.+||+.+|++. .-++.-|+.|...|+++..+
T Consensus 33 G~~L~e~~La~~lgVSR---tpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISF---TPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEEET
T ss_pred CCEeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEeC
Confidence 36789999999999999 89999999999999999876
No 487
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=73.10 E-value=2.4 Score=32.61 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQ 87 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 87 (214)
-++|-++||+.+|+++ ..+.|.++.|...|++...
T Consensus 166 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTR---QTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp CSSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEES
T ss_pred ccCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEEEc
Confidence 4799999999999999 9999999999999999886
No 488
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=72.98 E-value=1.3 Score=40.08 Aligned_cols=31 Identities=6% Similarity=-0.069 Sum_probs=24.2
Q ss_pred CcEEeecCCchHHHHHHHHHCC---------------CCeEEEecC
Q 040620 182 KPLVDVGGSTGTMARAIATAFP---------------DTKCTVFAC 212 (214)
Q Consensus 182 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dl 212 (214)
.+|+|.+||+|.++.++++..+ +.++.++|+
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Ei 291 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQES 291 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeC
Confidence 4999999999999998866543 456777775
No 489
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=72.89 E-value=2.2 Score=34.70 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=37.5
Q ss_pred CcchhhhcCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 40 RIPDIINNSG-QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 40 glfd~L~~~~-~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
.|...+...| .|-.+.+|++.+++++ ..++.+|+.|+..|.+....
T Consensus 145 ~i~~~~~~~g~~pp~~~dl~~~l~~~~---~~~~~~l~~l~~~g~lv~l~ 191 (258)
T 1lva_A 145 DLEDKYRVSRWQPPSFKEVAGSFNLDP---SELEELLHYLVREGVLVKIN 191 (258)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHCCCCCCCHHHHHhHhCCCH---HHHHHHHHHHHHCCCEEEec
Confidence 3445554432 3679999999999998 99999999999999999886
No 490
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=72.72 E-value=0.95 Score=32.71 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=31.7
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |..+||+.+|+++ .-+++-++.|...|++...+
T Consensus 33 ~~lPs~~~La~~~~vSr---~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 33 GRIPSVREYASIVEVNA---NTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp SEECCTTTTTTCC-CCS---GGGHHHHHHHHTTTSEEEET
T ss_pred CcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEEEc
Confidence 445 8889999999999 99999999999999998876
No 491
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=72.52 E-value=2.1 Score=29.22 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQ 86 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 86 (214)
+++++++||+.+|+++ +.|.|+++......+-..
T Consensus 18 ~~~~~~~lA~~~~~S~---~~l~r~fk~~~g~s~~~~ 51 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSS---GYLSIMFKKNFGIPFQDY 51 (103)
T ss_dssp TTCCHHHHHHHTTCCH---HHHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHCcCHHHH
Confidence 5899999999999999 999999877665544443
No 492
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=72.05 E-value=2.9 Score=33.28 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 51 PMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 51 p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
++|-++||+.+|+++ ..+.|+|..|...|++....
T Consensus 217 ~lt~~~lA~~lG~sr---~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 217 KITRQEIGQIVGCSR---ETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECS
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEEcC
Confidence 689999999999999 99999999999999999874
No 493
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=71.59 E-value=3.3 Score=32.65 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=33.2
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPM-TLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
..+ |-.+||+.+|++. .-+++-|+.|...|++....
T Consensus 29 ~~LPsE~eLa~~~gVSR---~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 29 TILPAERELSELIGVTR---TTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp SBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEEec
Confidence 667 7999999999998 89999999999999999875
No 494
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=71.25 E-value=2.1 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHH
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCL 77 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~ 77 (214)
.++++++||+.+|+++ +.|.|+++.
T Consensus 22 ~~~~~~~lA~~~~~S~---~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSP---SLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 6799999999999999 999888765
No 495
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=71.01 E-value=2.7 Score=33.55 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 50 QPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 50 ~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
+++|+.+||+.+|.++ ......|+.+...|+++.+.
T Consensus 167 g~vt~~~la~~l~ws~---~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSV---LLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCCCH---HHHHHHHHHHHHcCCEEEEC
Confidence 7999999999999998 89999999999999999985
No 496
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=70.82 E-value=2.9 Score=33.40 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 49 GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 49 ~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|..++-.+||+.+|++. .-++.-|+.|...|+++..+
T Consensus 49 G~~L~e~~La~~lgVSR---tpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 49 GARLSEPDICAALDVSR---NTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEEET
T ss_pred cCEeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEeC
Confidence 36789999999999998 89999999999999999886
No 497
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=70.11 E-value=0.91 Score=37.38 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred HhcCcchhhhcCC--CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeecCCCCCCccceeeCCC
Q 040620 37 IQLRIPDIINNSG--QPMTLTQIIVAL-NVHPNKTRCTQILVCLLAHSGFFVQQKDGKNEQEEESILLPP 103 (214)
Q Consensus 37 ~~lglfd~L~~~~--~p~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~y~~t~ 103 (214)
++..|++.|.... .++++++|++++ ++++ ..++..|+.|...|.+=..-+ +++|+.+.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~---~~v~~al~~L~~eG~IYsTiD------d~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMSV---SSIKQAVDFLSNEGHIYSTVD------DDHFKSTD 268 (270)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCCCH---HHHHHHHHHHHhCCEEecccc------ccceeecc
Confidence 4556888887642 689999999999 6998 999999999999999954432 57887664
No 498
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=69.76 E-value=0.94 Score=40.84 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCC-ceeeecCCCCCCccceeeCCCCCcccccccc
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSG-FFVQQKDGKNEQEEESILLPPHLDFFSRISL 113 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g-~l~~~~~~~~~~~~~~y~~t~~~~~~s~~l~ 113 (214)
++..|+..|...+.+++.++||+.+|+++ ..+.+.+..|.+.| ++...... ...|.+|+. ++..+
T Consensus 6 ~~~~iL~~l~~~~~~~~~~~~a~~~~~~~---~~v~~~~~~L~~~~~~v~~~~~~-----~~~~~Lt~e----g~~~~ 71 (508)
T 3l4g_A 6 VAELLLRRLEASDGGLDSAELAAELGMEH---QAVVGAVKSLQALGEVIEAELRS-----TKHWELTAE----GEEIA 71 (508)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHcCCCH---HHHHHHHHHHHhCCCeEEEEEEE-----EEEEEECHH----HHHHH
Confidence 55667778876522789999999999999 99999999999998 88765431 578999999 88876
No 499
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=69.54 E-value=3.3 Score=32.41 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 040620 49 GQPMTLTQIIVALNVHPNKTRCTQILVCLLAHSGFFVQQK 88 (214)
Q Consensus 49 ~~p~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 88 (214)
|..++-.+||+.+|++. .-++.-|+.|.+.|+++..+
T Consensus 37 G~~L~E~~La~~lgVSR---tpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGR---NSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEECS
T ss_pred CCccCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEEec
Confidence 36788999999999999 89999999999999999876
No 500
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=69.26 E-value=1.9 Score=30.46 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=21.5
Q ss_pred HhcCcchhhhcCCCCCCHHHHHHHcCCC
Q 040620 37 IQLRIPDIINNSGQPMTLTQIIVALNVH 64 (214)
Q Consensus 37 ~~lglfd~L~~~~~p~t~~eLA~~~g~~ 64 (214)
++-.|+++|.+ +|+|+.|||+.+|+.
T Consensus 12 ~Re~Ii~lL~~--~plta~ei~~~l~i~ 37 (105)
T 2gmg_A 12 RREKIIELLLE--GDYSPSELARILDMR 37 (105)
T ss_dssp HHHHHHHHTTT--SCBCTTHHHHSSCCC
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHhCCC
Confidence 34557788875 899999999999994
Done!