BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040622
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7T|A Chain A, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|B Chain B, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|C Chain C, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|D Chain D, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
Length = 263
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 17 DAQLSPLGWQQVDNLRKRAEASGLARKIDLVITSPLLRTLQTAVGVFGGDGQSQTDGIDA 76
D L+ LGW Q + + +G++ I V SP LR ++TA G G + I
Sbjct: 57 DTPLTRLGWFQAQLVGEGMRMAGVS--IKHVYASPALRCVETAQGFLDGLRADPSVKIKV 114
Query: 77 HPSLTATATVNCPP----IVAVELCRERLVPASSAACREFIHVTREEASIESEDDKLWKA 132
P L + P + +ELC+ L + ++ + +AS E+ D
Sbjct: 115 EPGLFEFKNWHMPKGIDFMTPIELCKAGL--NVDMTYKPYVEM---DASAETMD------ 163
Query: 133 NTREPFEEVAARGIEFMKWLWTRQEKE---IAVVSHGIFLQQTLNAL 176
E RG M+ EK+ + + H I L Q + AL
Sbjct: 164 -------EFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGAL 203
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 65 GDGQSQTDGIDAHPSLTATATVNCPPIV-----AVELCRERLVPASSAACREF 112
GD + Q D P+++ T V+ P + A+E+CR+ L P S + F
Sbjct: 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137
>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422
Length = 172
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 40 LARKIDLVITSPLLRTLQTA 59
L R+ DL++TSPL+R QTA
Sbjct: 43 LGRQFDLIVTSPLIRARQTA 62
>pdb|3RXY|A Chain A, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|B Chain B, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|C Chain C, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|D Chain D, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|E Chain E, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
pdb|3RXY|F Chain F, Crystal Structure Of Nif3 Superfamily Protein From
Sphaerobacter Thermophilus
Length = 278
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 72 DGIDAHPSLTATATVNCPPIVA--VELCRERLVPASSA 107
DG+ AH +AT+N P ++ VEL E VPA++A
Sbjct: 61 DGVIAHHPAGGSATLNFPEVLTRHVELXVEHGVPATAA 98
>pdb|1JSN|A Chain A, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|A Chain A, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin
Length = 325
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 154 TRQEKEIAVVSHGIFLQQTLNA-----------LLNDCQAS---FNQELCPRFTNC-EIR 198
T EK + V L++T N +L DC + +C F N E
Sbjct: 18 TIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWS 77
Query: 199 SVVIVDRSITGSCYPETIS 217
+V D + G CYPE +
Sbjct: 78 YIVEKDNPVNGLCYPENFN 96
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 3 GNNGPEALLSQEFFDAQLSPLGWQQVDNLRKRAEASGLARKIDLVITSPLLRTLQTAVGV 62
G G AL Q +D + + D+ RK+ G +ID++ T+ L
Sbjct: 12 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNY 71
Query: 63 F-GGDGQSQTDGIDAHPSLTATA 84
F G+G I H S TATA
Sbjct: 72 FRSGEGFLLVFSITEHESFTATA 94
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 3 GNNGPEALLSQEFFDAQLSPLGWQQVDNLRKRAEASGLARKIDLVITSPLLRTLQTAVGV 62
G G AL Q +D + + D+ RK+ G +ID++ T+ L
Sbjct: 16 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNY 75
Query: 63 F-GGDGQSQTDGIDAHPSLTATA 84
F G+G I H S TATA
Sbjct: 76 FRSGEGFLLVFSITEHESFTATA 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,641,535
Number of Sequences: 62578
Number of extensions: 239520
Number of successful extensions: 531
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 17
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)