BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040622
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09676|YA03_SCHPO Uncharacterized protein C5H10.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5H10.03 PE=4 SV=1
Length = 219
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 2 EGNNGPEALLSQEFFDAQLSPLGWQQVDNLRKRAEASGLARKIDLVITSPLLRTLQT--- 58
+ N GP+ D L+ G +Q + L K E+ + ID ++ SP+ RTLQT
Sbjct: 18 QHNVGPDE--DHNIRDPVLTSEGIEQCEALAKELESKQIP--IDGIVCSPMRRTLQTMEI 73
Query: 59 AVGVFGGDGQSQTDGIDAHPSLTATATVNCPPIVAVELCR-ERLVPASS-AACREFIHVT 116
A+ + +G + P + C + +EL + +L P + +C++ I+
Sbjct: 74 ALKKYLAEGGPDKVPVYISPFFQEVGHLPCD--IGLELDKLNKLYPKYNFQSCQDGIY-- 129
Query: 117 REEASIESEDDKLWKANTREPFEEVAARGIEFMKWLWTRQEKEIAVVSHGIFLQQTLNAL 176
E+ I + D + A R E +++L +++IAV++H F++ L +
Sbjct: 130 PEKRDIYASDVTIS-----------AIRSKEALEYLAALPQQQIAVITHSAFIRFLLKKM 178
Query: 177 LNDCQASFNQELCPR--FTNCEIRSVVIVDRSITGSCYPETISGELRL 222
+ F L P+ F NCE R +V +T +GEL+L
Sbjct: 179 VKAADIDF---LPPQLSFKNCEFRIYDLV----------QTTTGELKL 213
>sp|Q9FN26|U79B6_ARATH UDP-glycosyltransferase 79B6 OS=Arabidopsis thaliana GN=UGT79B6
PE=2 SV=1
Length = 453
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 139 EEVAARGIEFMKWLWTRQEKEIAVVSHGIFLQQ-----TLNALLNDCQASF-----NQEL 188
E V ARG+ + W+ +Q +A S G F+ AL+NDCQ F Q L
Sbjct: 312 ERVKARGVVWGGWV--QQPLILAHPSIGCFVSHCGFGSMWEALVNDCQIVFIPHLGEQIL 369
Query: 189 CPRFTNCEIRSVVIVDRSITGSCYPETISGELR 221
R + E++ V V R TG E++SG +R
Sbjct: 370 NTRLMSEELKVSVEVKREETGWFSKESLSGAVR 402
>sp|O42905|RTI1_SCHPO DNA repair and recombination protein rti1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rti1 PE=1 SV=1
Length = 371
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 50 SPLLRTLQTAVGVFGGDGQSQTDGIDAHPSLTATATVNCPPI 91
SP + + + F GD + D IDAH +T V PP+
Sbjct: 268 SPRVEEFEELLNQFEGDEKVSVDKIDAHDKMTEAQVVKIPPV 309
>sp|Q6ABV7|RSMG_LEIXX Ribosomal RNA small subunit methyltransferase G OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=rsmG PE=3 SV=1
Length = 209
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 15 FFDAQLSPLGWQQVDNLRKRAEASGLARKID-------------LVITSPLLRTLQTAVG 61
+ + Q++ LG VD +R RAE + LA+ +D L +T+PLLR V
Sbjct: 103 WLNEQVAELGLLNVDIVRARAEDAKLAKPLDQVTARAVSAFRKLLPLTAPLLRDGGELVL 162
Query: 62 VFGGDGQSQTDG 73
+ G Q++ DG
Sbjct: 163 MKGAAAQAEIDG 174
>sp|P36069|PMU1_YEAST Probable phosphomutase PMU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PMU1 PE=1 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 14 EFFDAQLSPLGWQQV-----DNLRKRAEASGLARKIDLVITSPLLRTLQTAVGVFGGDGQ 68
E+ D++L+PLG QV + L A+ G+ + +SP+ R L+T + +
Sbjct: 92 EWLDSKLTPLGKDQVRRTGSNVLLPMAKQLGMLPHV--FFSSPMRRCLETFIESWT-PVL 148
Query: 69 SQTDGIDAHPSLTATATVNCPPIVAVELCRERLVPASSAACREFIHVTREEASI------ 122
++T + A ++ + C +R+ A S A E+ + E
Sbjct: 149 AETQELPAGTKISTRIIEGLRETLGSHTCDKRV--AHSMAVDEYQDFSTESGHTVHWQYV 206
Query: 123 --ESEDDKLWKANTREPFEEVAARGIEFMKWLWTR---QEKEIAVVSHGIFLQQTLNAL 176
EDD+LW + RE E+ R + + L+ + +EK I++ H +Q L L
Sbjct: 207 PDYPEDDELWLPDHRETCAEMDKRTLNGLFELFNQLSSEEKFISLTCHSGVIQSVLRNL 265
>sp|Q81I05|PPAT_BACCR Putative pyridoxal phosphate-dependent acyltransferase OS=Bacillus
cereus (strain ATCC 14579 / DSM 31) GN=BC_0621 PE=3 SV=1
Length = 396
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 29/98 (29%)
Query: 39 GLARKIDLVITSPLLRTLQTAVGVFGGDGQSQTDGID-----AHPSLTATATVNCPPIVA 93
GL+ K+D I TL A+GV GG + + ID + P L +TA
Sbjct: 230 GLSDKVDFQIG-----TLSKAIGVIGGYVAGKQNLIDWLKVRSRPFLFSTA--------- 275
Query: 94 VELCRERLVPASSAACREFIHVTREEASIESEDDKLWK 131
L PA +AAC I + E + D+LW+
Sbjct: 276 -------LTPADAAACMRSIEILMESTELH---DRLWE 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,259,696
Number of Sequences: 539616
Number of extensions: 3151213
Number of successful extensions: 7006
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7003
Number of HSP's gapped (non-prelim): 12
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)