BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040623
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 600 bits (1546), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/405 (70%), Positives = 324/405 (80%), Gaps = 3/405 (0%)
Query: 31 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSA 90
Q+IKVA P+VEMDGDEMTR+IW+ IK+KLI P +++ +KYFDLGLPNRD T+DQVTI SA
Sbjct: 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSA 62
Query: 91 QATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLV 150
AT KY+VA+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFREPIICKNIPRLV
Sbjct: 63 LATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLV 122
Query: 151 SGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALS 210
GWTKPI IGRHA GDQY+ATD V+ G K+VF P + +WEVY+F AGGV +
Sbjct: 123 PGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMG 181
Query: 211 MYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270
MYNTDESI FA + A QKKWPLY+STKNTILK YDGRFKDIFQE++E +K+ F+
Sbjct: 182 MYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241
Query: 271 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 330
IWYEHRLIDDMVA LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGK
Sbjct: 242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGK 301
Query: 331 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEA 390
TIEAEAAHGTVTRHYR HQKG TSTN IASIFAW++GL HR KLDGN L+ F + LE
Sbjct: 302 TIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEK 361
Query: 391 ACIATVESGKMTKDLALLIHGPQVAR--PQYLNTEEFIDAVTETL 433
C+ TVESG MTKDLA IHG + +LNT +F+D + L
Sbjct: 362 VCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/417 (67%), Positives = 335/417 (80%), Gaps = 3/417 (0%)
Query: 29 EFQKIKVAN-PIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTI 87
EF K++ +VEM GDEMTR+IW+LIK+KLI P++ELD+ +DLG+ NRDAT+DQVT
Sbjct: 4 EFMSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTK 63
Query: 88 QSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIP 147
+A+A K+NV +KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIP
Sbjct: 64 DAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIP 123
Query: 148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGV 207
RLVSGW KPI IGRHA+GDQYRATD V+ GPGK+++ + P QK + V++F GGV
Sbjct: 124 RLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGV 183
Query: 208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
A+ MYN D+SI FA +S A K WPLYLSTKNTILK YDGRFKDIFQE+Y+ Q+KS+
Sbjct: 184 AMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQ 243
Query: 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
FEA IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCP
Sbjct: 244 FEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCP 303
Query: 328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
DGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW++GLAHRAKLD N L F
Sbjct: 304 DGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANA 363
Query: 388 LEAACIATVESGKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
LE I T+E+G MTKDLA I G P V R YLNT EF+D + E LK +++ +AKL
Sbjct: 364 LEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA-QAKL 419
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/406 (68%), Positives = 330/406 (81%), Gaps = 2/406 (0%)
Query: 39 IVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNV 98
+VEM GDEMTR+IW+LIK+KLI P++ELD+ +DLG+ NRDAT+DQVT +A+A K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 99 AIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPIC 158
+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIPRLVSGW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 159 IGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESI 218
IGRHA+GDQYRATD V+ GPGK+++ + P QK + V++F GGVA+ MYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 219 CSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR 278
FA +S A K WPLYLSTKNTILK YDGRFKDIFQE+Y+ Q+KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 279 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 338
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 339 GTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES 398
GTVTRHYR++QKG ETSTN IASIFAW++GLAHRAKLD N L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 399 GKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
G MTKDLA I G P V R YLNT EF+D + E LK +++ +AKL
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA-QAKL 414
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/406 (68%), Positives = 329/406 (81%), Gaps = 2/406 (0%)
Query: 39 IVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNV 98
+VEM GDEMTR+IW+LIK+KLI P++ELD+ +DLG+ NRDAT+DQVT +A+A K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 99 AIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPIC 158
+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIPRLVSGW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 159 IGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESI 218
IG HA+GDQYRATD V+ GPGK+++ + P QK + V++F GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 219 CSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR 278
FA +S A K WPLYLSTKNTILK YDGRFKDIFQE+Y+ Q+KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 279 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 338
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 339 GTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES 398
GTVTRHYR++QKG ETSTN IASIFAW++GLAHRAKLD N L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 399 GKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
G MTKDLA I G P V R YLNT EF+D + E LK +++ +AKL
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA-QAKL 414
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/401 (68%), Positives = 326/401 (81%), Gaps = 1/401 (0%)
Query: 39 IVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNV 98
+VEM GDEMTR+IW+LIK+KLI P++ELD+ +DLG+ NRDAT+DQVT +A+A KYNV
Sbjct: 7 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 66
Query: 99 AIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPIC 158
+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIPRLV+GW KPI
Sbjct: 67 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 126
Query: 159 IGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESI 218
IGRHA+GDQYRATD V+ GPGK+++ + P QK + V+ F GGVA+ MYN D+SI
Sbjct: 127 IGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSI 186
Query: 219 CSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR 278
FA +S A K WPLYLSTKNTILK YDGRFKDIFQE+Y+ ++KS+FEA I YEHR
Sbjct: 187 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHR 246
Query: 279 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 338
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 247 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 306
Query: 339 GTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES 398
GTVTRHYR++QKG ETSTN IASIFAWS+GLAHRAKLD N L F + LE CI T+E+
Sbjct: 307 GTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEA 366
Query: 399 GKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMS 438
G MTKDLA I G P V R YLNT EF+D + E LK +++
Sbjct: 367 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 407
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/406 (68%), Positives = 329/406 (81%), Gaps = 2/406 (0%)
Query: 39 IVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNV 98
+VEM GDEMTR+IW+LIK+KLI P++ELD+ +DLG+ NRDAT+DQVT +A+A K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 99 AIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPIC 158
+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIPRLVSGW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 159 IGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESI 218
IG HA+GDQYRATD V+ GPGK+++ + P QK + V++F GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 219 CSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR 278
FA +S A K WPLYLSTKNTILK YDGRFKDIFQE+Y+ Q+KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 279 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 338
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 339 GTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES 398
GTVTRHYR++QKG ETSTN IASIFAW++GLAHRAKLD N L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 399 GKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
G MTKDLA I G P V R YLNT EF+D + E LK +++ +AKL
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA-QAKL 414
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 566 bits (1458), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/421 (67%), Positives = 331/421 (78%), Gaps = 10/421 (2%)
Query: 19 SGVRKRGREMEFQ----KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLG 74
SGV + FQ KIKVANP+VE+DGDE TR+IW+ IKDKLI+P+L+LD++Y+DLG
Sbjct: 9 SGVDLGTENLYFQSXXAKIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLG 68
Query: 75 LPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNG 134
+ NRDATDDQVTI +A A K+ V +KCATITPDE RV+EF LK+ WKSPNGTIRNIL G
Sbjct: 69 VENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGG 128
Query: 135 TVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKT 194
+FREPIICKN+PRLV GWTKPI +GRHAFGDQYRATD G GKL + FV + Q
Sbjct: 129 VIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED-GQTI 187
Query: 195 EWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKD 254
E +VY GAG VAL+ YN DESI FA AS N Q+K P+YLSTKNTILK YDGRFKD
Sbjct: 188 EHDVYDAPGAG-VALAXYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKD 246
Query: 255 IFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGF 314
IFQ+V++ ++ ++F+A +WYEHRLIDD VA ALK GGYVWACKNYDGDVQSD +AQGF
Sbjct: 247 IFQKVFDEEFAAQFKAEKLWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQGF 306
Query: 315 GSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAK 374
GSLGL TSVL PDGKT+EAEAAHGTVTRHYR HQKG ETSTNSIASIFAW++GLAHRAK
Sbjct: 307 GSLGLXTSVLXTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAK 366
Query: 375 LDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434
LDGN L F+E LE C+ TVESG TKDLALLI GP +P +L+T F+D + E L+
Sbjct: 367 LDGNAELAKFSETLERVCVDTVESGFXTKDLALLI-GPD--QP-WLSTTGFLDKIDENLR 422
Query: 435 E 435
+
Sbjct: 423 K 423
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/407 (65%), Positives = 320/407 (78%), Gaps = 4/407 (0%)
Query: 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQ 91
KIKV+ P+VE+DGDEMTRVIWKLIKD LI P+L++ + Y+DLG+ +RDATDDQVTI +A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 92 ATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVS 151
A K+ V +KCATITPDE RV+EFNLK+MW SPNGTIRNIL GT+FREPI+ N+PRLV
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 152 GWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSM 211
GWTKPI IGRHAFGDQYRAT+ + PG + L F P + E+ S GGV L M
Sbjct: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185
Query: 212 YNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271
YN ESI FA AS + KWP+YLSTKNTILK YDG FKD F+ VYE ++K++FEAA
Sbjct: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAA 245
Query: 272 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
G+ YEHRLIDDMVA LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+ DGKT
Sbjct: 246 GLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKT 305
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+EAEAAHGTVTRHYR +Q G TSTN IASIFAW++GL HR KLDG P ++DF KLE+
Sbjct: 306 VEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESV 365
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMS 438
IATVESGKMTKDLA+LI GP+ +LN+EEF+DA+ + L++ ++
Sbjct: 366 VIATVESGKMTKDLAILI-GPE---QDWLNSEEFLDAIADNLEKELA 408
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/411 (64%), Positives = 315/411 (76%), Gaps = 6/411 (1%)
Query: 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQS 89
F KIKV P+VE+DGDEMTR+IW IK KLI P+L++D+KY+DL + +RDAT D++T +
Sbjct: 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDA 75
Query: 90 AQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRL 149
A+A KY V IKCATITPDE RVKEFNL +MWKSPNGTIRNIL GTVFREPI+ IPRL
Sbjct: 76 AEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRL 135
Query: 150 VSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN--QKTEWEVYSFTGAGGV 207
V W KPI IGRHA GDQY+ATD +I GPG L+LV+ P Q +VY + G+G V
Sbjct: 136 VPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSG-V 194
Query: 208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
A++MYNTDESI FA +S A KK L+LSTKNTILK YDGRFKDIFQEVYEAQ+KSK
Sbjct: 195 AMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSK 254
Query: 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
FE GI YEHRLIDDMVA +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV P
Sbjct: 255 FEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTP 314
Query: 328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
DGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWS+GL R +LD P L F
Sbjct: 315 DGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANI 374
Query: 388 LEAACIATVES-GKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERM 437
LE+A + TV+ G MTKDLAL + R Y+ TEEF+DAV + L++ +
Sbjct: 375 LESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 423
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/405 (55%), Positives = 288/405 (71%), Gaps = 6/405 (1%)
Query: 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQS 89
KIK+ P+VEMDGDEMTR+IW+LIK+ L+ P++EL+ +Y+DLGL NRD T+DQVTI +
Sbjct: 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDA 60
Query: 90 AQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRL 149
A+A KY V +KCATITP+ RV+E+NLK+MWKSPNGTIR IL+GTVFR PI+ +I
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 150 VSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVAL 209
V GW KPI I RHA+GD Y+ + + GK +LVF + + + ++ F G GV +
Sbjct: 121 VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSEN-GEVSRQTIHEFDGP-GVIM 178
Query: 210 SMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269
M+NTD+SI SFA A N A L+ STK+TI K YD RFKDIFQE+YE ++K KFE
Sbjct: 179 GMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238
Query: 270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 329
A + Y + LIDD VA ++SEGG VWACKNYDGDV SD +A FGSL +MTSVLV PDG
Sbjct: 239 AKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG 298
Query: 330 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLE 389
K E EAAHGTVTRHY H KG ETSTNS+A+IFAW+ L R +LDG L+DF KLE
Sbjct: 299 K-YEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLE 357
Query: 390 AACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434
A + T+E+G MTKDLA L P+ + +NTE+F+ + +T +
Sbjct: 358 QASVQTIENGVMTKDLASLSEVPE---KKIVNTEDFLKEIRKTFE 399
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/408 (53%), Positives = 289/408 (70%), Gaps = 9/408 (2%)
Query: 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQS 89
+K+KV NPIVE+DGDEM RV+WK+IK+KLI P+L++ + YFDLG+ RD TDDQ+TI++
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 90 AQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRL 149
A+A KY V +KCATITPD RVKE+NLK+ WKSPN TIR L+GTVFR+PI+ KN+P L
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 150 VSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVAL 209
V W KPI IGRHA+GD Y A +A ++GP +++LV V + N+ V+ F G GV +
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELV-VRNKENKTL--LVHKFEG-NGVVM 176
Query: 210 SMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269
+M+N ++SI SFA++ +N A +K ++ +TK+TI K Y FKDIFQE + + K + E
Sbjct: 177 AMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELE 235
Query: 270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 329
AG+ Y + LIDD A L+SEGG +WAC NY+GD+ SD +A GFGSLGLMTSVLV PDG
Sbjct: 236 KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG 295
Query: 330 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLE 389
E EAAHGTV RHY + KG +TSTN ASIFAW+ + R +LDG P + +F +KLE
Sbjct: 296 -VYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLE 354
Query: 390 AACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERM 437
A I T+ESG +TKDL P +Y+ EEFID V + L++ +
Sbjct: 355 KAVINTIESGVITKDLQPFTEPPI---DKYVTLEEFIDEVKKNLEKLL 399
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/404 (49%), Positives = 270/404 (66%), Gaps = 6/404 (1%)
Query: 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQ 91
KI++ P+VE+DGDEMTRV+W LIKDKL+ PF++L +Y+DLG+ RD T+DQ+TI +A+
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 92 ATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVS 151
A KY V +K ATITP++ RV+E+ LK WKSPN T+R +L+GTVFR+PI+ KNI V
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 152 GWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSM 211
W KPI +GRHA+GD Y+ + + GKL++V V D ++T + + +
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIV-VTDKNGKETRQTIME-VDEPAIVQGI 179
Query: 212 YNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271
+NT SI FA A + +K + +TK+TI K YD RFK IF+E++ ++K KF AA
Sbjct: 180 HNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAA 239
Query: 272 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
GI Y + LIDD+VA +K+EGG +WACKNYDGDV SD +A FGSL +M+SVLV P G
Sbjct: 240 GIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-Y 298
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
E EAAHGTV RHY H KG TSTN +A I+AW+ L R +LDG P L F + LEA
Sbjct: 299 FEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAI 358
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKE 435
I +ESG MT DLA + + A + L++ EFID + + L++
Sbjct: 359 TIECIESGYMTGDLARIC---EPAAIKVLDSIEFIDELGKRLQQ 399
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+ E A G+ G+ N +A I + + L H KL+ D +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLE------DAALAIEAA 334
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKE 435
+ G +T +L P R Q +T + D + + + E
Sbjct: 335 VSKALSDGYLTCELL-----PASERSQAKSTSQMGDYIAQAIAE 373
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+ E A G+ G+ N +A I + + L H KL+ D +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLE------DAALAIEAA 334
Query: 392 CIATVESGKMTKDL 405
+ SG +T +L
Sbjct: 335 VSKALNSGYLTGEL 348
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 343 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 389
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 390 DFERLMDGAKL-----LKCSEFGDAIIENM 414
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 36/212 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQ--------------WKSKFEAAGIWYEHRLIDDM 283
L K I+K +G F+D EV + + + K I + R+ D+M
Sbjct: 220 LVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNM 279
Query: 284 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 342
L Y V A N +GD SD A G LG+ + DG + E HG+
Sbjct: 280 FQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGV-FEPVHGSAP 337
Query: 343 RHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMT 402
++ G+ N A I + + D +E ++ A T+ SG +T
Sbjct: 338 KY------AGQNKVNPTAEILTGALMFEYIGWKDA-------SEMIKKAVEMTISSGIVT 384
Query: 403 KDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434
D+ + G +V T EF +AV E L+
Sbjct: 385 YDIHRHMGGTKVG------TREFAEAVVENLQ 410
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGTAP- 343
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
G+ N + I + L H + ++ E + + +TK
Sbjct: 344 -----DIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTK 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFESLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L K I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPA 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 216 ESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWY 275
E I FA +KK ++ +TK+ I+K +G K F++V AQ EA
Sbjct: 168 EKIVRFAFELARAEGRKK--VHCATKSNIMKLAEGTLKRAFEQV--AQEYPDIEAV---- 219
Query: 276 EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 334
H ++D+ +K + V N +GD+ SD + G LG S + +
Sbjct: 220 -HIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF-- 276
Query: 335 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDF--TEKLEAAC 392
EA HG+ ++ G+ N A + + L + L +F + +E A
Sbjct: 277 EAVHGSAPKY------AGKNVINPTAVLLSAVMMLRY---------LEEFATADLIENAL 321
Query: 393 IATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433
+ T+E G+ ++ G V + T E+ +A+ + L
Sbjct: 322 LYTLEEGR-------VLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 238 LSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHR--------LIDDMVAYA-- 287
L I+K +G FKD ++ ++ + G W + + +I D++A A
Sbjct: 227 LVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 288 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 343
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 344 HYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTK 403
+ G+ N + I + L H + ++ E + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 404 DLALLIHGPQVARPQYLNTEEFIDAVTETL 433
D L+ G ++ L EF DA+ E +
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 277 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 335
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 336 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIAT 395
A G+ G+ N IA I + + L R LD N D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAN----DAATAIEQAINRA 329
Query: 396 VESGKMTKDLA 406
+E G T DLA
Sbjct: 330 LEEGVRTGDLA 340
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ H +D+ +++ + V N GD+ SD +Q GS+G++ S + +G+
Sbjct: 214 VRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EGRA 272
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+ E HG+ G+ N +A+I + + L H L+ P + +++EAA
Sbjct: 273 MY-EPIHGSAP------DIAGQDKANPLATILSVAMMLRH--SLNAEP----WAQRVEAA 319
Query: 392 CIATVESGKMTKDLA 406
++ G T D+A
Sbjct: 320 VQRVLDQGLRTADIA 334
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ EH L+D+ +++ + V +N GD+ SD + GSLG++ S + DG
Sbjct: 235 VELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLG 294
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+ E HG+ G+ N +A+I + + L + L+ + +E A
Sbjct: 295 L-YEPVHGSAP------DIAGKGIANPLATILSAAMMLRYSFGLEEEAK------AIEKA 341
Query: 392 CIATVESGKMTKDLALLIHGPQVARP--QYLNTEEFIDAVTETLKERMSIKA 441
+ G T D +A+P +Y++T E D V + + ++ A
Sbjct: 342 VEKVLAEGYRTAD---------IAKPGGKYVSTTEMTDEVKAAVVDELATSA 384
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ EH ID+ L+ + V C N GD+ SD +A GS+GL++S + G
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFG 287
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
+ E A G+ G+ N IA I + + L H K + + +E A
Sbjct: 288 L-FEPAGGSAP------DIAGKGIANPIAQILSAALMLRHSLKQE------EAASAIERA 334
Query: 392 CIATVESGKMTKDL 405
+ SG +T +L
Sbjct: 335 VTKALNSGYLTGEL 348
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 34/200 (17%)
Query: 236 LYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVA-YALKSEGGY 294
L+++ K +L G F D +EV + F + + ++D+ ++ E
Sbjct: 166 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCATQLVMRPERYD 218
Query: 295 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 354
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 219 VIVTTNLLGDILSDLAAGLMGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 270
Query: 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQV 414
N A+I + + L + + + +++E A +E G MT DL
Sbjct: 271 IANPTAAILSAAMMLDYLGEKEA-------AKRVEKAVDLVLERGPMTPDLG-------- 315
Query: 415 ARPQYLNTEEFIDAVTETLK 434
TE F +AV E LK
Sbjct: 316 ---GDATTEAFTEAVVEALK 332
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 198 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 257
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 258 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 303
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 193 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 252
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 253 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 298
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 277 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 335
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 336 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIAT 395
A G+ G+ N IA I + + L R LD + D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAD----DAACAIERAINRA 329
Query: 396 VESGKMTKDLA 406
+E G T DLA
Sbjct: 330 LEEGIRTGDLA 340
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 34/200 (17%)
Query: 236 LYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDD-MVAYALKSEGGY 294
L+++ K +L G F D +EV + F + + ++D+ + ++ E
Sbjct: 166 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCAMQLVMRPERFD 218
Query: 295 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 354
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 219 VIVTTNLLGDILSDLAAGLVGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 270
Query: 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQV 414
N A+I + + L + + + +++E A +E G T DL
Sbjct: 271 IANPTAAILSAAMMLDYLGEKEA-------AKRVEKAVDLVLERGPRTPDLG-------- 315
Query: 415 ARPQYLNTEEFIDAVTETLK 434
TE F +AV E LK
Sbjct: 316 ---GDATTEAFTEAVVEALK 332
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 34/200 (17%)
Query: 236 LYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDD-MVAYALKSEGGY 294
L+++ K +L G F D +EV + F + + ++D+ + ++ E
Sbjct: 165 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCAMQLVMRPERFD 217
Query: 295 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 354
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 218 VIVTTNLLGDILSDLAAGLVGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 269
Query: 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQV 414
N A+I + + L + + + +++E A +E G T DL
Sbjct: 270 IANPTAAILSAAMMLDYLGEKEA-------AKRVEKAVDLVLERGPRTPDLG-------- 314
Query: 415 ARPQYLNTEEFIDAVTETLK 434
TE F +AV E LK
Sbjct: 315 ---GDATTEAFTEAVVEALK 331
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 257 QEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFG 315
QEV E + E I R+ D+M+ + Y V N +GD SD + G
Sbjct: 264 QEVQEKYGGVRPEGK-ILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVG 322
Query: 316 SLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKL 375
+G M + + DG + AE HGT ++ G+ N A I + S +
Sbjct: 323 GIG-MAAGMNMGDGIAV-AEPVHGTAPKY------AGKDLINPSAEILSASLLIGEFMGW 374
Query: 376 DGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433
+ +E A V+S K+T+DLA H P V Q L T E+ TETL
Sbjct: 375 R------EVKSIVEYAIRKAVQSKKVTQDLAR--HMPGV---QPLRTSEY----TETL 417
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 42/203 (20%)
Query: 233 KWPLYLSTKNTILKNYDGRFKDIFQEVYEAQW--------------KSKFEAAGIWYEHR 278
K + L K I+K +G F+D + E ++ K++ +AAG E +
Sbjct: 222 KPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQ 281
Query: 279 -------LIDDMVA------YALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 325
+I D++A L+ E V A N +GD SD LA G +G+ +
Sbjct: 282 AIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANL 341
Query: 326 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFT 385
D I EA HGT G+ N + I + L H +
Sbjct: 342 S-DTHAI-FEATHGTAP------DIAGQGKANPSSLILSAVMMLEHLGWGEA-------A 386
Query: 386 EKLEAACIATVESGKMTKDLALL 408
+ + AA AT+ +G++T DLA L
Sbjct: 387 QAIVAAMNATIAAGEVTGDLAAL 409
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ H L+D + + G + V +N GD+ SD + GSLG++ S + D +
Sbjct: 214 VELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLPSASLRSD-RF 272
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
E HG+ G+ N + ++ + + L + L+ +E A
Sbjct: 273 GMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKE------AAAIEKA 320
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433
++ G T DL QVA + ++T E D + E L
Sbjct: 321 VDDVLQDGYCTGDL-------QVANGKVVSTIELTDRLIEKL 355
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 229 AYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYAL 288
+ KK + + K+ ++ DG +F+E A I + +++D MV
Sbjct: 188 SIHKKPLVTIIHKSNVMSVTDG----LFRESCRHAQSLDPSYASINVDEQIVDSMVYRLF 243
Query: 289 KSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 340
+ + V N GD+ SD A GSLGL+ S V + + +E HG+
Sbjct: 244 REPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMSEPVHGS 294
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 264 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 317
W+ E G Y EH+ +D + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 318 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371
GL+ S + G+ T E HG+ G+ N A+I + + L H
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEH 300
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 55/180 (30%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLA----------------QGFG 315
I E+ +D+ +K+ + V C N GD+ SD LA +GFG
Sbjct: 216 INLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFG 275
Query: 316 SLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKL 375
L P G + + AH + N IA I + + L + K
Sbjct: 276 --------LYEPAGGS-APDIAHLNI--------------ANPIAQILSAALMLKYSFKE 312
Query: 376 DGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKE 435
+ + +E A + GKMTKDL YLNT+E D + E LKE
Sbjct: 313 E------QAAQDIENAISLALAQGKMTKDL---------NAKSYLNTDEMGDCILEILKE 357
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 22/141 (15%)
Query: 295 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 354
V N GD+ SD A GSLGL+ S G E A G+ G+
Sbjct: 246 VILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYEPAGGSAP------DIAGKN 296
Query: 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQV 414
N IA I + + L H +++ K+E A +E G T+D+A P+
Sbjct: 297 IANPIAQILSLAMMLEHSFG------MVEEARKIERAVELVIEEGYRTRDIA---EDPEK 347
Query: 415 ARPQYLNTEEFIDAVTETLKE 435
A ++T + D + + L+E
Sbjct: 348 A----VSTSQMGDLICKKLEE 364
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 221 FAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLI 280
A+ +N A +++ + K +++ DG +F E + K K E Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDG----LFAEACRSVLKGKVE-----YSEMYV 199
Query: 281 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 339
D A +++ + V +N GD+ SD +Q GSLG+ S + D K + E HG
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIG-DKKAL-FEPVHG 257
Query: 340 TVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAAC 392
G+ N A + + S +L + R + + LE A
Sbjct: 258 A------AFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAI 304
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 230 YQKKWPLYLSTKNTILKNYDGRFKDIFQEVYE 261
Y+ W +Y + K+ IL+ Y RF F E+YE
Sbjct: 57 YKNFWEIYYTVKDLILRGYRVRFDGFFIELYE 88
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ H L+D + + G + V +N GD+ SD + GSLG++ S + D +
Sbjct: 214 VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSD-RF 272
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
E HG+ G+ N + ++ + + L + L+ +E A
Sbjct: 273 GMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKE------AAAIEKA 320
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433
++ G T DL QVA + ++T E D + E L
Sbjct: 321 VDDVLQDGYCTGDL-------QVANGKVVSTIELTDRLIEKL 355
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
+ H L+D + + G + V +N GD+ SD + GSLG++ S + D +
Sbjct: 214 VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSD-RF 272
Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
E HG+ G+ N + ++ + + L + L+ +E A
Sbjct: 273 GMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKE------AAAIEKA 320
Query: 392 CIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433
++ G T DL QVA + ++T E D + E L
Sbjct: 321 VDDVLQDGYCTGDL-------QVANGKVVSTIELTDRLIEKL 355
>pdb|1ITW|A Chain A, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|B Chain B, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|C Chain C, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|D Chain D, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1J1W|A Chain A, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|B Chain B, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|C Chain C, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|D Chain D, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
Length = 741
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 303 GDVQSDFLAQGF-----GSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 357
G+V D+L F G+ M S++ G + A G+ +H + + G +
Sbjct: 543 GNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWD 602
Query: 358 SIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGK 400
S+ A + L H NP+ L L+ A +++ K
Sbjct: 603 SLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNK 645
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,702,755
Number of Sequences: 62578
Number of extensions: 590886
Number of successful extensions: 1279
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 74
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)