Query 040623
Match_columns 443
No_of_seqs 136 out of 1345
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 5E-111 1E-115 870.8 42.3 424 16-440 57-480 (483)
2 COG0473 LeuB Isocitrate/isopro 100.0 2E-109 5E-114 825.1 30.3 338 36-435 3-347 (348)
3 PTZ00435 isocitrate dehydrogen 100.0 8E-108 2E-112 837.8 41.4 408 29-438 2-411 (413)
4 PRK08299 isocitrate dehydrogen 100.0 2E-107 4E-112 833.9 40.0 401 30-436 1-401 (402)
5 TIGR00127 nadp_idh_euk isocitr 100.0 3E-107 7E-112 832.3 40.5 401 32-437 2-407 (409)
6 PRK08997 isocitrate dehydrogen 100.0 3E-104 7E-109 797.2 34.5 330 35-433 1-334 (334)
7 PLN00103 isocitrate dehydrogen 100.0 7E-103 2E-107 801.5 38.6 396 29-436 2-409 (410)
8 PLN02329 3-isopropylmalate deh 100.0 1E-103 3E-108 806.5 32.7 353 36-440 46-408 (409)
9 PRK14025 multifunctional 3-iso 100.0 5E-103 1E-107 787.2 33.5 321 38-433 3-330 (330)
10 PLN00118 isocitrate dehydrogen 100.0 6E-103 1E-107 795.4 33.7 327 37-433 42-372 (372)
11 PRK08194 tartrate dehydrogenas 100.0 7E-103 2E-107 792.6 33.5 339 37-434 4-350 (352)
12 TIGR02089 TTC tartrate dehydro 100.0 1E-102 2E-107 791.8 32.4 340 37-433 4-352 (352)
13 PRK00772 3-isopropylmalate deh 100.0 4E-101 9E-106 781.3 33.9 343 37-435 3-357 (358)
14 PRK09222 isocitrate dehydrogen 100.0 8E-101 2E-105 798.6 34.4 334 37-435 5-343 (482)
15 TIGR02924 ICDH_alpha isocitrat 100.0 5E-101 1E-105 797.7 32.6 333 38-435 2-339 (473)
16 TIGR00169 leuB 3-isopropylmala 100.0 7E-101 1E-105 778.0 32.7 340 38-433 1-349 (349)
17 PRK06451 isocitrate dehydrogen 100.0 2E-100 3E-105 787.3 34.2 350 39-433 26-408 (412)
18 PRK03437 3-isopropylmalate deh 100.0 1E-100 2E-105 774.6 32.3 333 37-433 5-344 (344)
19 PLN00123 isocitrate dehydrogen 100.0 3E-100 6E-105 772.0 34.7 321 37-433 31-359 (360)
20 TIGR00175 mito_nad_idh isocitr 100.0 1.5E-99 3E-104 765.0 33.6 325 37-433 4-333 (333)
21 KOG0785 Isocitrate dehydrogena 100.0 2E-100 4E-105 744.0 22.6 326 37-433 36-365 (365)
22 TIGR02088 LEU3_arch isopropylm 100.0 2.7E-98 6E-103 751.9 33.4 320 39-430 1-322 (322)
23 PRK07006 isocitrate dehydrogen 100.0 2.1E-98 5E-103 772.2 32.1 350 39-433 22-409 (409)
24 TIGR00183 prok_nadp_idh isocit 100.0 1.4E-97 3E-102 768.8 32.4 351 39-433 29-416 (416)
25 PRK07362 isocitrate dehydrogen 100.0 6.6E-97 1E-101 759.6 31.2 351 39-432 31-473 (474)
26 PF00180 Iso_dh: Isocitrate/is 100.0 1.9E-95 4E-100 741.5 20.6 338 38-429 1-348 (348)
27 PLN00096 isocitrate dehydrogen 100.0 2.9E-93 6.2E-98 722.0 34.6 379 40-433 2-393 (393)
28 COG0538 Icd Isocitrate dehydro 100.0 4.9E-86 1.1E-90 659.8 30.5 365 38-434 20-407 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 3E-84 6.6E-89 637.8 24.5 331 31-434 37-373 (375)
30 KOG0786 3-isopropylmalate dehy 100.0 7.5E-80 1.6E-84 586.9 21.2 345 36-437 4-362 (363)
31 KOG1526 NADP-dependent isocitr 100.0 9.3E-75 2E-79 563.1 30.2 411 28-440 10-420 (422)
32 PF03971 IDH: Monomeric isocit 97.2 0.015 3.4E-07 63.0 16.7 182 205-399 449-640 (735)
33 TIGR00178 monomer_idh isocitra 96.4 0.058 1.2E-06 58.8 13.4 182 205-399 453-644 (741)
34 COG2838 Icd Monomeric isocitra 94.4 0.74 1.6E-05 49.5 13.4 182 206-399 456-646 (744)
35 PF04166 PdxA: Pyridoxal phosp 90.9 0.16 3.5E-06 51.6 2.7 134 211-367 150-296 (298)
36 PRK00232 pdxA 4-hydroxythreoni 89.2 0.26 5.7E-06 50.8 2.7 141 211-371 177-326 (332)
37 PRK03371 pdxA 4-hydroxythreoni 89.1 0.27 5.9E-06 50.5 2.7 139 211-370 176-324 (326)
38 PRK03743 pdxA 4-hydroxythreoni 88.9 0.29 6.3E-06 50.5 2.7 141 211-371 177-326 (332)
39 PRK03946 pdxA 4-hydroxythreoni 88.4 0.34 7.3E-06 49.5 2.8 135 211-371 157-303 (307)
40 PRK01909 pdxA 4-hydroxythreoni 88.2 0.34 7.3E-06 49.9 2.7 141 211-371 172-322 (329)
41 PRK05312 pdxA 4-hydroxythreoni 88.0 0.35 7.6E-06 49.9 2.7 141 211-371 181-331 (336)
42 PRK02746 pdxA 4-hydroxythreoni 88.0 0.36 7.8E-06 50.0 2.7 140 211-371 179-339 (345)
43 TIGR00557 pdxA 4-hydroxythreon 87.8 0.37 8E-06 49.5 2.6 138 211-370 169-318 (320)
44 COG1995 PdxA Pyridoxal phospha 87.7 0.37 8.1E-06 49.4 2.5 58 307-371 267-325 (332)
45 COG0538 Icd Isocitrate dehydro 49.6 8.4 0.00018 40.5 1.3 31 148-187 122-152 (407)
46 PLN00103 isocitrate dehydrogen 42.3 14 0.0003 39.4 1.6 15 155-169 154-168 (410)
47 PRK12861 malic enzyme; Reviewe 36.4 1.6E+02 0.0035 34.0 9.0 95 215-316 612-722 (764)
48 PF14542 Acetyltransf_CG: GCN5 35.2 83 0.0018 25.3 4.8 37 218-265 40-76 (78)
49 PRK07232 bifunctional malic en 34.4 1.5E+02 0.0032 34.3 8.2 97 214-317 602-714 (752)
50 PF03971 IDH: Monomeric isocit 32.3 1.3E+02 0.0028 33.9 6.9 110 164-276 174-290 (735)
51 TIGR00651 pta phosphate acetyl 26.9 2.4E+02 0.0051 28.9 7.5 95 215-316 158-269 (303)
52 KOG1671 Ubiquinol cytochrome c 26.5 36 0.00079 32.9 1.5 26 317-344 156-181 (210)
53 COG1222 RPT1 ATP-dependent 26S 26.5 34 0.00074 36.1 1.4 68 219-307 230-304 (406)
54 PF00582 Usp: Universal stress 25.6 73 0.0016 26.0 3.1 26 215-240 12-37 (140)
55 PRK05312 pdxA 4-hydroxythreoni 24.8 58 0.0013 33.9 2.7 19 38-56 5-25 (336)
56 PRK12862 malic enzyme; Reviewe 24.7 3.4E+02 0.0073 31.5 9.0 99 211-316 607-721 (763)
57 COG0836 {ManC} Mannose-1-phosp 24.4 2E+02 0.0042 30.0 6.3 112 262-402 21-142 (333)
58 KOG1014 17 beta-hydroxysteroid 23.7 1.4E+02 0.0031 30.8 5.2 35 223-265 64-98 (312)
59 COG0655 WrbA Multimeric flavod 22.4 3.6E+02 0.0079 25.3 7.5 82 39-134 6-100 (207)
60 PF02268 TFIIA_gamma_N: Transc 22.3 2.3E+02 0.005 21.3 4.8 24 383-406 10-33 (49)
61 cd01988 Na_H_Antiporter_C The 22.2 1E+02 0.0023 25.6 3.4 28 216-243 10-37 (132)
62 PRK03371 pdxA 4-hydroxythreoni 21.9 72 0.0016 33.1 2.7 20 37-56 3-24 (326)
63 PRK00232 pdxA 4-hydroxythreoni 21.7 75 0.0016 33.0 2.8 20 37-56 5-26 (332)
64 KOG0189 Phosphoadenosine phosp 21.6 2E+02 0.0044 28.3 5.4 58 226-294 62-122 (261)
65 PRK02746 pdxA 4-hydroxythreoni 20.9 78 0.0017 33.1 2.8 20 37-56 10-31 (345)
66 PRK15005 universal stress prot 20.9 1.2E+02 0.0027 25.9 3.7 23 218-240 17-39 (144)
67 PRK01909 pdxA 4-hydroxythreoni 20.8 81 0.0018 32.7 2.8 20 37-56 6-27 (329)
68 TIGR00178 monomer_idh isocitra 20.7 4.2E+02 0.0091 30.0 8.2 114 164-281 178-299 (741)
69 PRK10569 NAD(P)H-dependent FMN 20.5 2.8E+02 0.0061 26.1 6.3 83 39-135 3-92 (191)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5e-111 Score=870.81 Aligned_cols=424 Identities=78% Similarity=1.236 Sum_probs=391.6
Q ss_pred CccccccccccccccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHh
Q 040623 16 GRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLK 95 (443)
Q Consensus 16 ~~~~~~~~~~~~~~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~ 95 (443)
-|+|++|.-...++|+||+|.+||++|+|||||+|||+.++++|+.++++++|+++|+|.+++++||+++|+|+++++|+
T Consensus 57 ~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk 136 (483)
T PLN03065 57 HRASSVRCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLK 136 (483)
T ss_pred ccccchhhhcchhhhccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHH
Confidence 47788887766677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEecccCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEE
Q 040623 96 YNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVI 175 (443)
Q Consensus 96 ~da~LkG~v~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vi 175 (443)
+||+||||++||..++++++++++.|+|||++||+.||||+|+|||.|+|+|+++|||++||+++|||++|.|+++|+++
T Consensus 137 ~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi 216 (483)
T PLN03065 137 YNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVI 216 (483)
T ss_pred cCEEEECcccCCccccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEE
Confidence 99999999999987666677788899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeEEEEeCCCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHH
Q 040623 176 QGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDI 255 (443)
Q Consensus 176 vrent~e~~y~~~~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~ 255 (443)
+.+++++.+|.+|+|++..++.+.++.+ ++++.++++|+++++||+|+||+||++|+++||++||+||||.+||+|+++
T Consensus 217 ~~~g~~~~~~~rEnte~~~e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~di 295 (483)
T PLN03065 217 KGPGKLKMVFVPEDGNAPVELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDI 295 (483)
T ss_pred ecCCeeEEEeecCCCCCcceeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHH
Confidence 9999999999999998765555445554 678877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEe
Q 040623 256 FQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 335 (443)
Q Consensus 256 ~~ev~a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FE 335 (443)
|+|||.++|..+|++.+|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++||
T Consensus 296 f~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fE 375 (483)
T PLN03065 296 FQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE 375 (483)
T ss_pred HHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEe
Confidence 99998778888888889999999999999999999999999999999999999999999999999999999997447999
Q ss_pred cccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCC
Q 040623 336 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVA 415 (443)
Q Consensus 336 p~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~ 415 (443)
|+||||||||+.|++||+++|||+|+|+|++|||+|+|++++++.|.++|++|++||.+++++|.+|+|||.+.+|..+.
T Consensus 376 a~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~ 455 (483)
T PLN03065 376 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVS 455 (483)
T ss_pred cCcCcCccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCccc
Confidence 99999999999999999966999999999999999999999999999999999999999999999999997433342222
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhhh
Q 040623 416 RPQYLNTEEFIDAVTETLKERMSIK 440 (443)
Q Consensus 416 ~~~~~sT~e~~daV~~~l~~~~~~~ 440 (443)
++..++|+||+|+|+++|+..+...
T Consensus 456 ~~~~~~T~ef~daV~~~L~~~~~~~ 480 (483)
T PLN03065 456 REFYLNTEEFIDAVAQTLATKRGEP 480 (483)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhccC
Confidence 3446999999999999998876543
No 2
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-109 Score=825.09 Aligned_cols=338 Identities=21% Similarity=0.239 Sum_probs=309.1
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcCC---CceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINPF---LELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~~---~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
.++|++|||||||||||++++++|.+.+ ++|+|+++++|++++++||.++|++++++|+++|++||||+++|.|...
T Consensus 3 ~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~~ 82 (348)
T COG0473 3 TYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDPL 82 (348)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCCC
Confidence 3569999999999999999999887664 8999999999999999999999999999999999999999999987543
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQ 192 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~ 192 (443)
+ ++++|.++.|||+||||||+||+ +++|++++|+ .+++|+||||||| ||+|+++...
T Consensus 83 ~-----~~~~~~ll~lRk~l~lyANlRP~------k~~~~~k~~~----------~~~~D~viVREnT-eG~Y~G~~~~- 139 (348)
T COG0473 83 P-----RPERGLLLALRKELDLYANLRPA------KSLPGLKSPL----------VKGVDIVIVRENT-EGLYFGEEGR- 139 (348)
T ss_pred C-----CcccchHHHHHHhcCceeeeeec------ccCCCCCCcc----------CCCccEEEEeeCC-CccccCCCcc-
Confidence 2 47888999999999999999998 7888999885 2589999999999 9999975321
Q ss_pred cceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc
Q 040623 193 KTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQK-KWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270 (443)
Q Consensus 193 ~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~ 270 (443)
..++.+++ ++++|||.++|||+|+|||+|++| ++|||+|||+|||+.+|+|||++|+||+ ++||
T Consensus 140 --------~~~~~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP----- 205 (348)
T COG0473 140 --------ILGGGEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP----- 205 (348)
T ss_pred --------ccCCCeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC-----
Confidence 01112467 679999999999999999999999 6799999999999999999999999995 9999
Q ss_pred CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhc
Q 040623 271 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 271 ~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~i 349 (443)
||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+|||||||
T Consensus 206 -dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDI----- 279 (348)
T COG0473 206 -DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDI----- 279 (348)
T ss_pred -CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcccc-----
Confidence 99999999999999999999999 99999999999999999999999999999999953369999999999998
Q ss_pred CCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhc-CCcccchhhhccCCCCCCCCccCHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES-GKMTKDLALLIHGPQVARPQYLNTEEFIDA 428 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~-G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 428 (443)
||||+ |||+|+|||++|||+|+|+.+ +|++|++||.+++++ |++|+||| | .++|.||+|+
T Consensus 280 AGkgi-ANPiA~IlS~aMML~~~g~~~-------~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~~d~ 340 (348)
T COG0473 280 AGKGI-ANPIATILSAAMMLRHLGEKE-------AADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEVGDA 340 (348)
T ss_pred cCCCc-cChHHHHHHHHHHHHHhCCch-------HHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHHHHH
Confidence 99999 999999999999999998654 899999999999995 69999999 7 7889999999
Q ss_pred HHHHHHH
Q 040623 429 VTETLKE 435 (443)
Q Consensus 429 V~~~l~~ 435 (443)
|+++|..
T Consensus 341 I~~~l~~ 347 (348)
T COG0473 341 IAKALAS 347 (348)
T ss_pred HHHHHhc
Confidence 9999864
No 3
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=8e-108 Score=837.80 Aligned_cols=408 Identities=71% Similarity=1.171 Sum_probs=371.2
Q ss_pred ccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCC
Q 040623 29 EFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPD 108 (443)
Q Consensus 29 ~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~ 108 (443)
+|.||+|.+|+++|.||+|.+.+|+.+++.|+.++++|+|+++++|.+++++||+++|++++++||++|++||||++||.
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~ 81 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPD 81 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeC
Q 040623 109 EVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPD 188 (443)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~ 188 (443)
.+++.+++++++|+|+|++||+.||||||+|||.|+++|+++|||++|+++.|||++|.|+++|++++||||.|++|++.
T Consensus 82 ~~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 82 EARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred cccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecC
Confidence 64333556777899999999999999999999888999999999999999999999999999999999999989999987
Q ss_pred CCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 189 GLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
++.++++..++.+.. ++++++.++|+++++||+|+||+||++|+++||++||+||||.+||+|+++|+||++++||++|
T Consensus 162 ~g~~~~~~~~~~~~~-~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 162 DGSEPQRVDVFDFKG-GGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCCcceeeeeeccCC-CCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 665544444444444 5677677999999999999999999999889999999999999999999999999656899999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhh
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~ 348 (443)
++++|++++++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||+++|
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~ 320 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQH 320 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999998861289999999999999999
Q ss_pred cCCC-CcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccC-CCCCCCCccCHHHHH
Q 040623 349 QKGG-ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHG-PQVARPQYLNTEEFI 426 (443)
Q Consensus 349 iAGk-~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G-~~~~~~~~~sT~e~~ 426 (443)
+||| ++ |||+|+|||++|||+|+|+++.++.+.++|++|++||.+++++|.+|+|||....| .++.+++.++|+||+
T Consensus 321 iaGk~~~-ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~ 399 (413)
T PTZ00435 321 QKGKETS-TNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFI 399 (413)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHH
Confidence 9996 67 99999999999999999999888889999999999999999999999999611003 123345579999999
Q ss_pred HHHHHHHHHHhh
Q 040623 427 DAVTETLKERMS 438 (443)
Q Consensus 427 daV~~~l~~~~~ 438 (443)
|+|+++|.+.+-
T Consensus 400 daV~~~L~~~~~ 411 (413)
T PTZ00435 400 DKVAEKLKKKLG 411 (413)
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-107 Score=833.88 Aligned_cols=401 Identities=73% Similarity=1.169 Sum_probs=352.0
Q ss_pred cccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCc
Q 040623 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 30 ~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|.|||+.+++++||||||||||++++++++.+++++|+|+++++|+++++++|+++|++++++||++|++||||++||..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
+++.+++.+++++|+|+.|||+||||+|+||++|+++|+++||+++|+++.||||++.|.++|++++|++.....|....
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 21111123346889999999999999999998889999999999999999999999999999999999776555555432
Q ss_pred CCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 190 LNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
|.. ++++...+.+ .+++...++|+++++||+|+||+||++|++|||+|||+|||+.+||||+++|+|||+++||++|.
T Consensus 161 g~~-~e~~~~~~~~-~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~ 238 (402)
T PRK08299 161 GEP-IEHEVHDFPG-AGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFE 238 (402)
T ss_pred Ccc-ccceeccccc-CceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccc
Confidence 211 1222221111 23443346999999999999999999998899999999999999999999999995469999999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhc
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~i 349 (443)
+++|++++++||++|||||++|++|||||+|||||||||++|+++||+|++||+|+|+++.++||||+||||||+++.||
T Consensus 239 ~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~I 318 (402)
T PRK08299 239 AAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQ 318 (402)
T ss_pred cCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988623899999999999888888
Q ss_pred CCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAV 429 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 429 (443)
||||++|||+|||||++|||+|||+++.++.+.++|++|++||.+++++|.+|+|||....| +.+.+||+||+|+|
T Consensus 319 aGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~----~~g~~tT~e~~daI 394 (402)
T PRK08299 319 KGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGP----DQKWLTTEEFLDAI 394 (402)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCC----CCCCcCHHHHHHHH
Confidence 99994499999999999999999999988999999999999999999999999999511003 01369999999999
Q ss_pred HHHHHHH
Q 040623 430 TETLKER 436 (443)
Q Consensus 430 ~~~l~~~ 436 (443)
+++|.+.
T Consensus 395 i~~l~~~ 401 (402)
T PRK08299 395 DENLEKA 401 (402)
T ss_pred HHHHHhh
Confidence 9999764
No 5
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=3.4e-107 Score=832.33 Aligned_cols=401 Identities=76% Similarity=1.230 Sum_probs=362.8
Q ss_pred cccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 32 ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
||||.+|++++.||+|.+.+|+.+++.|+.++++|+|+++|+|++++++||+++|++++++||++|++||||++||...+
T Consensus 2 ~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~ 81 (409)
T TIGR00127 2 KIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEAR 81 (409)
T ss_pred CccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
+.++.+++.|+|+|++||+.||||||+|||.++++++++|||++||++.|||+++.|+++|++++||||.|++|++..+.
T Consensus 82 ~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 82 VEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCC
Confidence 33445667899999999999999999999889999999999999999999999999999999999999999999986432
Q ss_pred CcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccC
Q 040623 192 QKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~ 271 (443)
.+....+..+...++++.+.++|+++++||+|+||+||++|+++||++||+|||+.+||+|+++|+||++++||++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~ 241 (409)
T TIGR00127 162 QKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEAL 241 (409)
T ss_pred cccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCC
Confidence 21111111222114567667899999999999999999999999999999999999999999999999658999999999
Q ss_pred CeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCC
Q 040623 272 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 351 (443)
Q Consensus 272 ~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAG 351 (443)
+|++++++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|++++..+|||+|||||||+++||||
T Consensus 242 ~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~iaG 321 (409)
T TIGR00127 242 GIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQKG 321 (409)
T ss_pred CEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999874468899999999999999999
Q ss_pred C-CcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccch----hhhccCCCCCCCCccCHHHHH
Q 040623 352 G-ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDL----ALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 352 k-~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dl----g~~~~G~~~~~~~~~sT~e~~ 426 (443)
| ++ |||+|+|||++|||+|+|+++.++.+.++|++|++||.+++++|++|+|| | |..+++++.++|+||+
T Consensus 322 k~~~-ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~G----G~~~~~~~~~~T~e~~ 396 (409)
T TIGR00127 322 QETS-TNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILG----GSPVERSAYLNTEEFI 396 (409)
T ss_pred CCCc-cChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccC----CCcccCCCCcCHHHHH
Confidence 7 77 99999999999999999988777778899999999999999999999999 5 5223345559999999
Q ss_pred HHHHHHHHHHh
Q 040623 427 DAVTETLKERM 437 (443)
Q Consensus 427 daV~~~l~~~~ 437 (443)
|+|+++|++.|
T Consensus 397 daV~~~L~~~~ 407 (409)
T TIGR00127 397 DAVEERLKKKI 407 (409)
T ss_pred HHHHHHHHHHh
Confidence 99999997655
No 6
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3e-104 Score=797.21 Aligned_cols=330 Identities=22% Similarity=0.270 Sum_probs=303.2
Q ss_pred ccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhh
Q 040623 35 VANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKE 114 (443)
Q Consensus 35 ~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~ 114 (443)
|.++|++|||||||||||+++++++.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc----
Confidence 3467999999999999999999999877899999999999999999999999999999999999999999999643
Q ss_pred hhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcc
Q 040623 115 FNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKT 194 (443)
Q Consensus 115 ~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~ 194 (443)
+++|+++.|||+||||+|+||+ |++||+++| ++++|+||||||| ||+|+++..
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~------k~~~g~~~~-----------~~~iD~vivREnt-eG~Y~g~~~---- 129 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPV------LSFPGTKAR-----------YDNIDIITVRENT-EGMYSGEGQ---- 129 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeec------ccCCCCCCc-----------cCCcCEEEEEecc-CceecCccc----
Confidence 3567899999999999999998 888899887 4689999999999 999997521
Q ss_pred eeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCC
Q 040623 195 EWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAG 272 (443)
Q Consensus 195 ~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~ 272 (443)
... .+ ..++ ++++|||++++||+|+||+||++|++ +||++||+|||+.|||+|+++|+|| +++|| +
T Consensus 130 --~~~--~~-~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yP------~ 197 (334)
T PRK08997 130 --TVS--ED-GETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREV-ALRYP------D 197 (334)
T ss_pred --eec--CC-CceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHH-HhhCC------C
Confidence 000 01 1256 67999999999999999999999965 7999999999999999999999999 68999 9
Q ss_pred eEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCC
Q 040623 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 351 (443)
Q Consensus 273 I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAG 351 (443)
|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+||||||| ||
T Consensus 198 V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPdI-----AG 270 (334)
T PRK08997 198 IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRDA--AIFEAVHGSAPDI-----AG 270 (334)
T ss_pred eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCCc--eEEECCCCchhhh-----CC
Confidence 9999999999999999999999 99999999999999999999999999999999884 9999999999998 99
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHH
Q 040623 352 GETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVT 430 (443)
Q Consensus 352 k~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 430 (443)
||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| .+|+||| | +++|+||+|+|+
T Consensus 271 k~i-ANP~a~IlS~amML~~lG~~~-------~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av~ 331 (334)
T PRK08997 271 KNL-ANPTSVILAAIQMLEYLGMPD-------KAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAVI 331 (334)
T ss_pred CCc-cCcHHHHHHHHHHHHHcCChh-------HHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHH
Confidence 999 999999999999999998754 8999999999999999 5799998 7 799999999999
Q ss_pred HHH
Q 040623 431 ETL 433 (443)
Q Consensus 431 ~~l 433 (443)
++|
T Consensus 332 ~~l 334 (334)
T PRK08997 332 DRL 334 (334)
T ss_pred hhC
Confidence 875
No 7
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.5e-103 Score=801.45 Aligned_cols=396 Identities=88% Similarity=1.351 Sum_probs=338.0
Q ss_pred ccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCC
Q 040623 29 EFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPD 108 (443)
Q Consensus 29 ~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~ 108 (443)
-++||+|.+|+++|||||||||+|+++++++.+++++|+|+++++|+++|++||+++|++++++|+++|++||||++||.
T Consensus 2 ~~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~ 81 (410)
T PLN00103 2 AFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (410)
T ss_pred CcccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccE----------EEecC
Q 040623 109 EVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDA----------VIQGP 178 (443)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~----------vivre 178 (443)
..++.+++.++.++|+|++|||+||||+|+|||.|+++|+++|||++|+++.||..++.|+++|+ |++||
T Consensus 82 ~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRE 161 (410)
T PLN00103 82 EARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPE 161 (410)
T ss_pred cccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEec
Confidence 32121122334589999999999999999999778899999999999999999999999855555 57777
Q ss_pred CceeEEEEeCCCCCcceeeeeeecCCcceEEEEee-cHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHH
Q 040623 179 GKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYN-TDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQ 257 (443)
Q Consensus 179 nt~e~~y~~~~g~~~~~~~~~~~~~~~~va~~~~~-T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ 257 (443)
|| |++|- +......+..+++ .+++ |+++++||+|+||+||++|+++||++||+|||+.+||+|+++|+
T Consensus 162 NT-Eg~ye---------~~~~~~~g~~~v~-~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~ 230 (410)
T PLN00103 162 GK-DEKTE---------LEVYNFTGAGGVA-LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQ 230 (410)
T ss_pred CC-CceeE---------EEeeccCCCcceE-EEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHH
Confidence 76 66661 1111111212343 3665 99999999999999999998899999999999999999999999
Q ss_pred HHHHhhccCccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecc
Q 040623 258 EVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA 337 (443)
Q Consensus 258 ev~a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~ 337 (443)
||++++|..+|++.+|++++++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..+||||+
T Consensus 231 eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~ 310 (410)
T PLN00103 231 EVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA 310 (410)
T ss_pred HHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCC
Confidence 99765455455456799999999999999999999999999999999999999999999999999999988633799999
Q ss_pred cccccccchh-hcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCC
Q 040623 338 HGTVTRHYRV-HQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVAR 416 (443)
Q Consensus 338 HGSApdi~~~-~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~ 416 (443)
||||||+|+. +||||++ |||+|+|||++|||+|+|.++++..+.++|++|++||.+++++|.+|+||+....|..+.+
T Consensus 311 HGSApd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T~Dl~~~~~gg~~~~ 389 (410)
T PLN00103 311 HGTVTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGPKVSR 389 (410)
T ss_pred CCcCcccchhhhhcCCCc-cChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCCcccccccCCCcccC
Confidence 9999995433 3599999 9999999999999999988877777899999999999999999999999952100211122
Q ss_pred CCccCHHHHHHHHHHHHHHH
Q 040623 417 PQYLNTEEFIDAVTETLKER 436 (443)
Q Consensus 417 ~~~~sT~e~~daV~~~l~~~ 436 (443)
++.++|+||+|+|+++|.+.
T Consensus 390 ~~~~~T~e~~daV~~~l~~~ 409 (410)
T PLN00103 390 DQYLNTEEFIDAVAEELKAR 409 (410)
T ss_pred CCCcCHHHHHHHHHHHHHhh
Confidence 33489999999999999753
No 8
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.5e-103 Score=806.47 Aligned_cols=353 Identities=15% Similarity=0.156 Sum_probs=309.4
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
.++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++.
T Consensus 46 ~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~ 125 (409)
T PLN02329 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDK 125 (409)
T ss_pred eEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCC
Confidence 467999999999999999999988643 6899999999999999999999999999999999999999999997532
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCC--ceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTK--PICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~--pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
.+ ...++ .++++.|||+||||+|+||+ |++||+++ |+. ++.++++|+||||||| ||+|++..
T Consensus 126 ~~--~~~~~-e~~ll~LRk~ldLyaNvRPv------r~~pg~~~~splk------~~~~~~iD~vIVREnT-EG~Y~G~~ 189 (409)
T PLN02329 126 NE--KHLRP-EMALFYLRRDLKVFANLRPA------TVLPQLVDASTLK------KEVAEGVDMMIVRELT-GGIYFGEP 189 (409)
T ss_pred Cc--ccccc-cccHHHHHHHcCCeEeeeee------eccCCCCCcCccc------ccccCCceEEEEEECC-CCeecCCC
Confidence 11 01111 24589999999999999998 78888874 652 2235789999999999 99999752
Q ss_pred CCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 190 LNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
+ +. . ... .+ .+++ ++++|||+++|||+|+||+||++|+++||++||+|||+ +++||+++|++| +++||
T Consensus 190 ~-~~-~--~~~-~~-~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~ev-A~eyP--- 258 (409)
T PLN02329 190 R-GI-T--INE-NG-EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTAL-ASEYP--- 258 (409)
T ss_pred c-ce-e--ccc-CC-ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHH-HhhCC---
Confidence 1 10 0 000 11 3466 67999999999999999999999988999999999999 999999999999 68999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~ 347 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+|||||||
T Consensus 259 ---dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAPdI--- 331 (409)
T PLN02329 259 ---DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAPDI--- 331 (409)
T ss_pred ---CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCchhh---
Confidence 99999999999999999999999 99999999999999999999999999999999886 58999999999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCc-cCHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQY-LNTEEF 425 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~-~sT~e~ 425 (443)
||||+ |||+|+|||++|||+| ||+.+ +|++|++||.+++++|.+|+||++. -| + ++|+||
T Consensus 332 --AGk~i-ANP~A~ILS~amML~~~Lg~~~-------~A~~I~~AV~~vl~~g~~T~Dl~~~-Gg-------~~~~T~e~ 393 (409)
T PLN02329 332 --AGQDK-ANPLATILSAAMLLKYGLGEEK-------AAKRIEDAVVDALNKGFRTGDIYSP-GN-------KLVGCKEM 393 (409)
T ss_pred --cCCcc-cChHHHHHHHHHHHhhhCCCHH-------HHHHHHHHHHHHHHcCCcCcccccC-CC-------CccCHHHH
Confidence 99999 9999999999999999 88654 8999999999999999999999310 04 4 899999
Q ss_pred HHHHHHHHHHHhhhh
Q 040623 426 IDAVTETLKERMSIK 440 (443)
Q Consensus 426 ~daV~~~l~~~~~~~ 440 (443)
+|+|+++|++++|++
T Consensus 394 ~daIi~~l~~~~~~~ 408 (409)
T PLN02329 394 GEEVLKSVDSKVPAT 408 (409)
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999999988865
No 9
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=5e-103 Score=787.24 Aligned_cols=321 Identities=23% Similarity=0.232 Sum_probs=299.2
Q ss_pred cEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhhh
Q 040623 38 PIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNL 117 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~~ 117 (443)
+|++||||||||||++++++++.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 3 ~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~--------- 73 (330)
T PRK14025 3 KICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA--------- 73 (330)
T ss_pred EEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc---------
Confidence 59999999999999999999998889999999999999999999999999999999999999999999983
Q ss_pred hccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcceee
Q 040623 118 KRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWE 197 (443)
Q Consensus 118 ~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~~ 197 (443)
.|.|+.|||+||||||+||+ |++||+++| ++++|+||||||| ||+|++.. +.
T Consensus 74 ----~~~~~~LR~~ldlyanvRP~------r~~pg~~~~-----------~~~iD~vivREnt-eG~Y~g~~------~~ 125 (330)
T PRK14025 74 ----ADVIVKLRRILDTYANVRPV------KSYKGVKCL-----------YPDIDYVIVRENT-EGLYKGIE------AE 125 (330)
T ss_pred ----cchHHHHHHHcCCeEEEEEe------ecCCCCCCc-----------cCCcCEEEEEECC-CceecCcc------cc
Confidence 24689999999999999998 888899887 4689999999999 99999641 11
Q ss_pred eeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhC----CC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccC
Q 040623 198 VYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQK----KW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271 (443)
Q Consensus 198 ~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r----~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~ 271 (443)
.. ++++ +++++||++++||+|+||+||++| ++ +||++||+|||+.|||+|+++|+|| +++||
T Consensus 126 ----~~-~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~ev-a~~yp------ 193 (330)
T PRK14025 126 ----IA-DGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEV-AKEYP------ 193 (330)
T ss_pred ----cC-CCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHH-HhhCC------
Confidence 11 3556 579999999999999999999999 45 7999999999999999999999999 68999
Q ss_pred CeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcC
Q 040623 272 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 350 (443)
Q Consensus 272 ~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iA 350 (443)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+||||||| |
T Consensus 194 ~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPdi-----A 266 (330)
T PRK14025 194 DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDKY--GLFEPVHGSAPDI-----A 266 (330)
T ss_pred CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCCc--ceeEcCCCCchhh-----C
Confidence 99999999999999999999999 99999999999999999999999999999999884 8999999999998 9
Q ss_pred CCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHH
Q 040623 351 GGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVT 430 (443)
Q Consensus 351 Gk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 430 (443)
|||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|++|+||| | ++||+||+|+|+
T Consensus 267 Gk~i-ANP~a~IlS~ammL~~lG~~~-------~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~av~ 327 (330)
T PRK14025 267 GKGI-ANPTATILTAVLMLRHLGENE-------EADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEEVA 327 (330)
T ss_pred CCCC-cCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHHH
Confidence 9999 999999999999999998755 89999999999999999999998 7 799999999999
Q ss_pred HHH
Q 040623 431 ETL 433 (443)
Q Consensus 431 ~~l 433 (443)
++|
T Consensus 328 ~~~ 330 (330)
T PRK14025 328 KRV 330 (330)
T ss_pred HhC
Confidence 874
No 10
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=6e-103 Score=795.36 Aligned_cols=327 Identities=24% Similarity=0.249 Sum_probs=303.5
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
++|++||||||||||++++++++.+.+++|+|+++++|++++++||+++|++++++|+++|++||||+++|...
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~------ 115 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK------ 115 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc------
Confidence 56999999999999999999999888999999999999999999999999999999999999999999999522
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
.++|+|+.|||+||||+|+||+ |++||+++| ++++|+||||||| ||+|+++. +
T Consensus 116 ---~~~s~~~~LRk~ldLyaNvRPv------r~~pg~~~~-----------~~~iD~vIVREnt-eG~Y~g~~------~ 168 (372)
T PLN00118 116 ---GHRSLNLTLRKELGLYANVRPC------YSLPGYKTR-----------YDDVDLVTIRENT-EGEYSGLE------H 168 (372)
T ss_pred ---cccCchHHHHHHcCCeeeeccc------ccCCCccCc-----------ccCceEEEEEecC-CCccccee------e
Confidence 3578899999999999999998 888899877 5789999999999 99999641 1
Q ss_pred eeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
. .. ++++ ++++||+++++||+|+||+||++|++ |||++||+|||+.|||+|+++|+|| +++|| +|+
T Consensus 169 ~----~~-~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~ev-a~eyP------dI~ 236 (372)
T PLN00118 169 Q----VV-RGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREV-AEKYP------EIV 236 (372)
T ss_pred e----cc-CCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHH-HhhCC------Cce
Confidence 1 11 3566 56999999999999999999999976 6999999999999999999999999 68999 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCC
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 353 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~ 353 (443)
+++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||||| ||||
T Consensus 237 ~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPdI-----AGk~ 310 (372)
T PLN00118 237 YEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPDI-----AGKN 310 (372)
T ss_pred EEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhhh-----CCCC
Confidence 99999999999999999999 99999999999999999999999999999999986 59999999999998 9999
Q ss_pred cccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHHHH
Q 040623 354 TSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVTET 432 (443)
Q Consensus 354 i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 432 (443)
+ |||+|||||++|||+|+|+.+ +|++|++||.+++++| ++|+||| | +++|+||+|+|+++
T Consensus 311 i-ANP~A~IlS~amML~~lG~~~-------~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~~~ 371 (372)
T PLN00118 311 L-ANPTALLLSAVMMLRHLKLNE-------QAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAICDH 371 (372)
T ss_pred C-cCcHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhh
Confidence 9 999999999999999998654 9999999999999999 8999998 7 79999999999987
Q ss_pred H
Q 040623 433 L 433 (443)
Q Consensus 433 l 433 (443)
|
T Consensus 372 l 372 (372)
T PLN00118 372 L 372 (372)
T ss_pred C
Confidence 5
No 11
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-103 Score=792.58 Aligned_cols=339 Identities=18% Similarity=0.192 Sum_probs=304.5
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP-----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
++|++||||||||||++++++++.+. +++|+|+++++|+++++++|+++|++++++||++|++||||+++|.|..
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 46999999999999999999888633 6899999999999999999999999999999999999999999996421
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
..++.+++++.|||+||||||+||+ +++||+++|+. .++++|+||||||| ||+|++..+.
T Consensus 84 -----~~~~~~~~~l~LR~~ldLyaNvRP~------k~~pg~~splk--------~~~~iD~vivREnt-eG~Y~g~~~~ 143 (352)
T PRK08194 84 -----DHISLWGLLIKIRREFEQVINIRPA------KQLRGIKSPLA--------NPKDFDLLVVRENS-EGEYSEVGGR 143 (352)
T ss_pred -----CCCCchhhHHHHHHHcCCEEEEEee------ecCCCCCCCCC--------CCCCCCEEEEEeCC-CccccCCCcc
Confidence 0113344589999999999999998 88889999863 13689999999999 9999975211
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~ 270 (443)
. . .+..+++ ++++||++++|||+|+||+||++|+++||+|||+|||+.|||||+++|+|| +++||
T Consensus 144 ---~---~--~g~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~ev-a~~yp----- 209 (352)
T PRK08194 144 ---I---H--RGEDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEV-GKDYP----- 209 (352)
T ss_pred ---c---c--CCccceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHH-HhhCC-----
Confidence 0 0 1113455 679999999999999999999999778999999999999999999999999 69999
Q ss_pred CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCc-eEEEecccccccccchhh
Q 040623 271 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 271 ~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~-~a~FEp~HGSApdi~~~~ 348 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+|||||||
T Consensus 210 -~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPdi---- 284 (352)
T PRK08194 210 -EIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDI---- 284 (352)
T ss_pred -CceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchhh----
Confidence 99999999999999999999999 999999999999999999999999999999997642 48999999999998
Q ss_pred cCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHH
Q 040623 349 QKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDA 428 (443)
Q Consensus 349 iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 428 (443)
||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|++|+||| | ++||+||+++
T Consensus 285 -AGk~i-ANP~a~IlS~amML~~lg~~~-------~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~~~a 344 (352)
T PRK08194 285 -AGKGI-ANPIGQIWTAKLMLDHFGEEE-------LGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEVTDE 344 (352)
T ss_pred -CCCCc-CCcHHHHHHHHHHHHHcCChh-------HHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHHHHH
Confidence 99999 999999999999999998654 89999999999999999999998 7 7999999999
Q ss_pred HHHHHH
Q 040623 429 VTETLK 434 (443)
Q Consensus 429 V~~~l~ 434 (443)
|+++|+
T Consensus 345 i~~~l~ 350 (352)
T PRK08194 345 IISRLK 350 (352)
T ss_pred HHHHHh
Confidence 999994
No 12
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.2e-102 Score=791.76 Aligned_cols=340 Identities=21% Similarity=0.217 Sum_probs=303.1
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP-----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
++|++||||||||||++++++++.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+.
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~- 82 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALV- 82 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCC-
Confidence 46999999999999999999888633 589999999999999999999999999999999999999999999632
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
| .....+++|+.|||+||||+|+||+ +++||+++|+. .+..+++|+||||||| ||+|++..+
T Consensus 83 -~---~~~~~~~~~l~LRk~ldLyaNvRP~------~~~~g~~sp~k------~~~~~~iD~vivREnt-eG~Y~G~~~- 144 (352)
T TIGR02089 83 -P---DHISLWGLLLKIRREFDQYANVRPA------KLLPGVTSPLR------NCGPGDFDFVVVRENS-EGEYSGVGG- 144 (352)
T ss_pred -C---CccCchhhHHHHHHHcCCeEEEEEe------ecCCCCCCccc------cccCCCCCEEEEEecC-Ccccccccc-
Confidence 1 0112345689999999999999998 78889988862 1124689999999999 999997521
Q ss_pred CcceeeeeeecC-CcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 192 QKTEWEVYSFTG-AGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 192 ~~~~~~~~~~~~-~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
. .. .+ ..+++ ++++||+++++||+|+||+||++|++|||++||+|||+.|||||+++|++| +++||
T Consensus 145 -~----~~--~~~~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~ev-a~~yp---- 212 (352)
T TIGR02089 145 -R----IH--RGTDEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEV-AAEYP---- 212 (352)
T ss_pred -c----cc--CCccceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHH-HhhCC----
Confidence 0 00 11 12456 679999999999999999999999668999999999999999999999999 78999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCc-eEEEecccccccccchh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~-~a~FEp~HGSApdi~~~ 347 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+|||||||
T Consensus 213 --~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPdi--- 287 (352)
T TIGR02089 213 --DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPDI--- 287 (352)
T ss_pred --CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchhh---
Confidence 99999999999999999999999 999999999999999999999999999999997642 48999999999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFID 427 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 427 (443)
||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|++|+||| | .+||+||+|
T Consensus 288 --AGk~i-ANP~a~Ils~amML~~lg~~~-------~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~e~~~ 346 (352)
T TIGR02089 288 --AGKGI-ANPIGAIWTAAMMLEHLGEKE-------AGAKIMDAIERVTAAGILTPDVG----G-------KATTSEVTE 346 (352)
T ss_pred --cCCCc-cCcHHHHHHHHHHHHHcCChh-------HHHHHHHHHHHHHHcCCccCCCC----C-------CcCHHHHHH
Confidence 99999 999999999999999998654 89999999999999999999998 7 799999999
Q ss_pred HHHHHH
Q 040623 428 AVTETL 433 (443)
Q Consensus 428 aV~~~l 433 (443)
+|+++|
T Consensus 347 ai~~~l 352 (352)
T TIGR02089 347 AVCNAL 352 (352)
T ss_pred HHHhhC
Confidence 999875
No 13
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-101 Score=781.27 Aligned_cols=343 Identities=20% Similarity=0.192 Sum_probs=305.5
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||++++++++.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++..
T Consensus 3 ~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~~ 82 (358)
T PRK00772 3 YKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDNL 82 (358)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCCC
Confidence 56999999999999999999988643 78999999999999999999999999999999999999999999975321
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCC--ceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTK--PICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~--pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
+. ..++.+| |+.|||+||||+|+||+ |++||+++ |+. ++.++++|+||||||| ||+|++...
T Consensus 83 ~~--~~~~~~~-~~~LR~~ldlyanvRP~------r~~pg~~~~~plk------~~~~~~iD~vivREnt-EG~Y~g~~~ 146 (358)
T PRK00772 83 PP--DVRPERG-LLALRKELGLFANLRPA------KLYPGLADASPLK------PEIVAGLDILIVRELT-GGIYFGEPR 146 (358)
T ss_pred Cc--cCCChhh-HHHHHHHcCCeEEEeEe------ecCCCCCCcCCCc------ccccCCccEEEEeccc-CCeecCCcc
Confidence 10 1123456 89999999999999998 88889885 752 2235689999999999 999997421
Q ss_pred CCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 191 NQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
+.....+ .+++ +++++|+++++||+|+||+||++|+++||++||+|||+ ++|+|+++|+|| +++||
T Consensus 147 ------~~~~~~~-~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~ev-a~eyp---- 213 (358)
T PRK00772 147 ------GREGLGG-EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEV-AKEYP---- 213 (358)
T ss_pred ------cccCCCC-ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHH-HhHCC----
Confidence 1110011 3456 67999999999999999999999988999999999999 999999999999 68999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~ 348 (443)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ ++||||+|||||||
T Consensus 214 --~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSApdi---- 286 (358)
T PRK00772 214 --DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAPDI---- 286 (358)
T ss_pred --CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchhhh----
Confidence 99999999999999999999999 99999999999999999999999999999999886 59999999999998
Q ss_pred cCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccch---hhhccCCCCCCCCccCHHH
Q 040623 349 QKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDL---ALLIHGPQVARPQYLNTEE 424 (443)
Q Consensus 349 iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dl---g~~~~G~~~~~~~~~sT~e 424 (443)
|||++ |||+|+|||++|||+| +|+.+ +|++|++||.+++++|++|+|| | | +++|+|
T Consensus 287 -AGk~~-aNP~a~Ils~ammL~~~lg~~~-------~a~~i~~Av~~~l~~g~~T~Dl~~~g----g-------~~~T~e 346 (358)
T PRK00772 287 -AGKGI-ANPIATILSAAMMLRYSLGLEE-------AADAIEAAVEKVLAQGYRTADIAEGG----G-------KVSTSE 346 (358)
T ss_pred -cCCCC-cCCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHcCCcCcccccCC----C-------CcCHHH
Confidence 99999 9999999999999999 88654 9999999999999999999999 5 6 899999
Q ss_pred HHHHHHHHHHH
Q 040623 425 FIDAVTETLKE 435 (443)
Q Consensus 425 ~~daV~~~l~~ 435 (443)
|+|+|+++|.+
T Consensus 347 ~~~av~~~l~~ 357 (358)
T PRK00772 347 MGDAILAALAE 357 (358)
T ss_pred HHHHHHHHhhc
Confidence 99999999953
No 14
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.5e-101 Score=798.57 Aligned_cols=334 Identities=23% Similarity=0.221 Sum_probs=305.4
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccC-CcccHHHHHHHHhcCeEEEecccCCCcchhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATD-DQVTIQSAQATLKYNVAIKCATITPDEVRVKEF 115 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~ 115 (443)
++|++|||||||||||++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||.+.
T Consensus 5 ~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~----- 79 (482)
T PRK09222 5 TPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGG----- 79 (482)
T ss_pred ceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCcc-----
Confidence 5799999999999999999999998899999999999999999987 7999999999999999999999999642
Q ss_pred hhhccCCCcchhhhhhcCceEEeeecccccCCccc-CCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcc
Q 040623 116 NLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLV-SGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKT 194 (443)
Q Consensus 116 ~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~-~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~ 194 (443)
+++|+|+.|||+||||||+||+ +++ ||+++| ++++|+||||||| ||+|++.
T Consensus 80 ----~~~s~~~~LRk~ldLYaNvRP~------r~~~pgv~~~-----------~~~iD~vIVRENt-EG~Y~G~------ 131 (482)
T PRK09222 80 ----GYKSLNVTLRKTLGLYANVRPC------VSYHPFVETK-----------HPNLDVVIIRENE-EDLYAGI------ 131 (482)
T ss_pred ----CccchHHHHHHHcCCeEEeeeE------EecCCCCCCC-----------CCCcCEEEEEecc-CCeeccc------
Confidence 4678899999999999999997 777 898877 4689999999999 9999964
Q ss_pred eeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCC
Q 040623 195 EWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAG 272 (443)
Q Consensus 195 ~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~ 272 (443)
++ . ...+++ .+++|||+++|||+||||+||++|++ |||++||+|||+.|||||+++|+|| +++|| +
T Consensus 132 e~----~-~~~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~ev-a~eyP------d 199 (482)
T PRK09222 132 EH----R-QTPDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEI-AKEYP------D 199 (482)
T ss_pred ee----e-cCCCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHH-HhhCC------C
Confidence 11 1 113566 56999999999999999999999976 7999999999999999999999999 68999 9
Q ss_pred eEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCC
Q 040623 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 351 (443)
Q Consensus 273 I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAG 351 (443)
|++++++||++||+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+||||||| ||
T Consensus 200 I~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~~--amFEpvHGSAPdI-----AG 272 (482)
T PRK09222 200 IEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPDI-----AG 272 (482)
T ss_pred ceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCCc--eeeECCCCCchhh-----cC
Confidence 9999999999999999999999 99999999999999999999999999999999884 9999999999998 99
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHH
Q 040623 352 GETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTE 431 (443)
Q Consensus 352 k~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 431 (443)
||+ |||+|+|||++|||+|+|+.+ +|++|++||.+++++|++|+||++. | .+.++++|+||+++|++
T Consensus 273 k~i-ANP~a~IlSaamML~hlG~~~-------~A~~I~~Av~~tl~~G~~T~Dl~g~--~---~~~~~~~T~e~~~aVi~ 339 (482)
T PRK09222 273 KNI-ANPSGLLNAAVMMLVHIGQFD-------IAELIENAWLKTLEDGIHTADIYNE--G---VSKKKVGTKEFAEAVIE 339 (482)
T ss_pred CCc-cCcHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHHHcCCCCcccCCC--C---CCCCCcCHHHHHHHHHH
Confidence 999 999999999999999998755 9999999999999999999999621 1 01136899999999999
Q ss_pred HHHH
Q 040623 432 TLKE 435 (443)
Q Consensus 432 ~l~~ 435 (443)
+|.+
T Consensus 340 ~l~~ 343 (482)
T PRK09222 340 NLGQ 343 (482)
T ss_pred HHhc
Confidence 9965
No 15
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=5.1e-101 Score=797.75 Aligned_cols=333 Identities=23% Similarity=0.215 Sum_probs=303.1
Q ss_pred cEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccC-CcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 38 PIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATD-DQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
+|++|||||||||||++++++|.+.+++|+|+++++|+++|+++| +++|++++++|+++|++||||+++|.+.
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~------ 75 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG------ 75 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc------
Confidence 599999999999999999999988899999999999999999995 8999999999999999999999999643
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCccc-CCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcce
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLV-SGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTE 195 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~-~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~ 195 (443)
+.+|+|+.|||+||||||+||+ +++ |++++| ++++|+||||||| ||+|++. +
T Consensus 76 ---~~~s~~~~LRk~ldLYANvRPv------~~~~p~~~~~-----------~~~vDiVIVRENt-EGlY~G~------e 128 (473)
T TIGR02924 76 ---GHKSLNVTLRKTLGLYANIRPC------VSYHPFIETK-----------SPNLNIVIVRENE-EDLYTGI------E 128 (473)
T ss_pred ---CcccHHHHHHHHcCCeEEEEEe------eccCCCCCCc-----------cCCcCEEEEEecc-CceecCc------e
Confidence 3578899999999999999997 666 777665 5789999999999 9999964 1
Q ss_pred eeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCe
Q 040623 196 WEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGI 273 (443)
Q Consensus 196 ~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I 273 (443)
+. .. .+++ .+++|||+++|||+||||+||++|++ |||++||+|||+.|||+|+++|+|| +++|| +|
T Consensus 129 ~~----~~-~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~ev-a~eyP------dI 196 (473)
T TIGR02924 129 YR----QT-PDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKI-AAEYP------DI 196 (473)
T ss_pred ee----cc-CChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHH-HhhCC------Cc
Confidence 11 11 3455 56999999999999999999999976 7999999999999999999999999 68999 99
Q ss_pred EEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCC
Q 040623 274 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG 352 (443)
Q Consensus 274 ~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk 352 (443)
++++++||++||||+++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+||||||| |||
T Consensus 197 ~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~--amFEpvHGSAPdI-----AGk 269 (473)
T TIGR02924 197 ESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPDI-----AGQ 269 (473)
T ss_pred EEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCc--ceeecCCCchhhh-----CCC
Confidence 999999999999999999999 99999999999999999999999999999999885 8999999999998 999
Q ss_pred CcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHH
Q 040623 353 ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTET 432 (443)
Q Consensus 353 ~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 432 (443)
|+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|++|+||++. | .+.++++|+||+|+|+++
T Consensus 270 ~i-ANP~a~IlSaamML~hLG~~~-------~A~~I~~AV~~vl~~G~~T~Dl~~~--~---~~gg~~sT~e~~daVi~~ 336 (473)
T TIGR02924 270 NI-ANPSGLLNAAIQMLVHIGQSD-------IAQLIYNAWLKTLEDGVHTADIYNE--K---TSKQKVGTKEFAEAVTAN 336 (473)
T ss_pred Cc-cChHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCcCcccccc--c---cCCCCcCHHHHHHHHHHH
Confidence 99 999999999999999998755 9999999999999999999999621 1 012379999999999999
Q ss_pred HHH
Q 040623 433 LKE 435 (443)
Q Consensus 433 l~~ 435 (443)
|.+
T Consensus 337 l~~ 339 (473)
T TIGR02924 337 LGK 339 (473)
T ss_pred hcc
Confidence 965
No 16
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=6.9e-101 Score=778.00 Aligned_cols=340 Identities=20% Similarity=0.192 Sum_probs=300.5
Q ss_pred cEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhh
Q 040623 38 PIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVK 113 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~ 113 (443)
+|++||||||||||++++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|.+...+
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 4899999999999999999988633 689999999999999999999999999999999999999999999653111
Q ss_pred hhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCC--ceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 114 EFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTK--PICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 114 ~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~--pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
...+++++ |+.|||+||||+|+||+ |++||+++ |+. ++.++++|+||||||| ||+|++...+
T Consensus 81 --~~~~~~~~-~~~LR~~ldlyanvRP~------r~~~g~~~~~p~~------~~~~~~iD~vivREnt-EG~Y~g~~~~ 144 (349)
T TIGR00169 81 --RDQRPEQG-LLKLRKSLDLFANLRPA------KVFPSLEDLSPLK------EEIAKGVDFVVVRELT-GGIYFGEPKG 144 (349)
T ss_pred --ccccchhh-HHHHHHHcCCeEEEEEe------eccCCCCccCCCc------ccccCCceEEEEeecc-CCeecCCCcc
Confidence 01122444 89999999999999997 78889875 542 2224789999999999 9999974210
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~ 270 (443)
... .+..+++ +++++||++++||+|+||+||++|+++||++||+|||+ ++|+|+++|+|| +++||
T Consensus 145 ------~~~-~~~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~ev-a~~yP----- 210 (349)
T TIGR00169 145 ------RFG-AGGEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEI-AKEYP----- 210 (349)
T ss_pred ------ccC-CCCcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHH-HhhCC-----
Confidence 000 0113566 67999999999999999999999988999999999999 999999999999 68999
Q ss_pred CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhc
Q 040623 271 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 271 ~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~i 349 (443)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ .+||||+|||||||
T Consensus 211 -~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPdi----- 283 (349)
T TIGR00169 211 -DVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPDI----- 283 (349)
T ss_pred -CceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhHh-----
Confidence 99999999999999999999999 99999999999999999999999999999999775 59999999999998
Q ss_pred CCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDA 428 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 428 (443)
||||+ |||+|+|||++|||+| +|+. ++|++|++||.+++++|++|+||| | +++|+||+++
T Consensus 284 AGk~i-ANP~a~IlS~amML~~~lg~~-------~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~e~t~a 344 (349)
T TIGR00169 284 AGKGI-ANPIAQILSAAMMLRYSFNLE-------EAADAIEAAVKKVLAEGYRTPDLG----S-------SATTEVGTAE 344 (349)
T ss_pred cCCCC-CChHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHcCCCccccC----C-------CcchHHHHHH
Confidence 99999 9999999999999999 6754 499999999999999999999998 7 7899999999
Q ss_pred HHHHH
Q 040623 429 VTETL 433 (443)
Q Consensus 429 V~~~l 433 (443)
|++.|
T Consensus 345 v~~~~ 349 (349)
T TIGR00169 345 MGEEL 349 (349)
T ss_pred HHhcC
Confidence 98753
No 17
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-100 Score=787.33 Aligned_cols=350 Identities=19% Similarity=0.218 Sum_probs=305.5
Q ss_pred EEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 39 IVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 39 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
|++|||||||||||+++++++.+. +++|+|+++++|+++|+++|+++|++++++|+++|++||||++||...
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 999999999999999999888632 269999999999999999999999999999999999999999999532
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
.|+|+|+.|||+||||||+||+ |++||+++|+. + ..++|+||+|||| ||+|++....
T Consensus 105 --------~~~s~~l~LRk~ldLyaNvRPv------k~~pgl~sp~~---~-----~~~iD~vIvREnT-eG~Y~g~~~~ 161 (412)
T PRK06451 105 --------GWKSINVAIRLMLDLYANIRPV------KYIPGIESPLK---N-----PEKIDLIIFRENT-DDLYRGIEYP 161 (412)
T ss_pred --------CCcChhHHHHHHcCCeEeecee------ecCCCCCCccc---C-----cCCccEEEEEecc-CCeeeccccc
Confidence 4778999999999999999998 78889998862 0 3589999999999 9999975210
Q ss_pred Ccce--eeeee-----ec-C-CcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHH
Q 040623 192 QKTE--WEVYS-----FT-G-AGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVY 260 (443)
Q Consensus 192 ~~~~--~~~~~-----~~-~-~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~ 260 (443)
...+ +.... +. + ..+++ +++++|+.+++||+|+||+||++|++ |||+|||+|||+.|||+|+++|+|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva 241 (412)
T PRK06451 162 YDSEEAKKIRDFLRKELGVEVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVA 241 (412)
T ss_pred cccccccccccccccccccccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHH
Confidence 0000 00000 00 0 12345 56999999999999999999999976 79999999999999999999999995
Q ss_pred HhhccC--------------ccccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceee
Q 040623 261 EAQWKS--------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 325 (443)
Q Consensus 261 a~eyp~--------------~f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSani 325 (443)
+++||+ +|++.+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+
T Consensus 242 ~~eypd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSani 321 (412)
T PRK06451 242 LKEFRDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANI 321 (412)
T ss_pred HHhCCcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeee
Confidence 558985 6777889999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccch
Q 040623 326 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDL 405 (443)
Q Consensus 326 g~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dl 405 (443)
|+++ +||||+||||||| ||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|.+|+||
T Consensus 322 g~~~--alFEpvHGSAPdi-----AGk~i-ANP~a~IlS~amML~~lg~~~-------~A~~I~~Av~~vl~~G~~T~Dl 386 (412)
T PRK06451 322 GDTG--GMFEAIHGTAPKY-----AGKNV-ANPTGIIKGGELMLRFMGWDK-------AADLIDKAIMESIKQKKVTQDL 386 (412)
T ss_pred CCCC--ceeECCCCCcccc-----CCCCC-cCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCcCccc
Confidence 9885 8999999999998 99999 999999999999999998654 8999999999999999999999
Q ss_pred hhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 406 ALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 406 g~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
++...| +.++|+||+|+|+++|
T Consensus 387 ~~~~gg------~~~~T~e~~daI~~~l 408 (412)
T PRK06451 387 ARFMGV------RALSTTEYTDELISII 408 (412)
T ss_pred cccCCC------CccCHHHHHHHHHHHH
Confidence 511003 2489999999999999
No 18
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-100 Score=774.56 Aligned_cols=333 Identities=19% Similarity=0.173 Sum_probs=298.8
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC---CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP---FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVK 113 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~---~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~ 113 (443)
++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++++++||++|++||||+++|..+.
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 56999999999999999999988744 8999999999999999999999999999999999999999999995321
Q ss_pred hhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCc
Q 040623 114 EFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQK 193 (443)
Q Consensus 114 ~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~ 193 (443)
..+++|+++.|||+||||+|+||+ |++||+++|+. .++++|++|||||| ||+|++..+.
T Consensus 83 ----~~~~~~~~~~LRk~ldLyaNvRP~------r~~pg~~sp~k--------~~~~iD~vivREnt-eG~Y~g~~~~-- 141 (344)
T PRK03437 83 ----GVLERGLLLKLRFALDHYVNLRPS------KLYPGVTSPLA--------GPGDIDFVVVREGT-EGPYTGNGGA-- 141 (344)
T ss_pred ----CCcccchHHHHHHHcCCeEEEEEe------ecCCCCCCcCC--------CCCCCCEEEEEECC-CccccCCccc--
Confidence 123577789999999999999998 88889998862 14689999999999 9999975211
Q ss_pred ceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccC
Q 040623 194 TEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271 (443)
Q Consensus 194 ~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~ 271 (443)
.... ...+++ ++++||+++++||+|+||+||++|++ +||++||+|||+.|||||+++|+|| +++||
T Consensus 142 ----~~~~-~~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp------ 209 (344)
T PRK03437 142 ----LRVG-TPHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEV-AAEYP------ 209 (344)
T ss_pred ----ccCC-CcceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHH-HhhCC------
Confidence 0000 113456 67999999999999999999999965 7999999999999999999999999 78999
Q ss_pred CeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCc-eEEEecccccccccchhhc
Q 040623 272 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 272 ~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~-~a~FEp~HGSApdi~~~~i 349 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. ++||||+|||||||
T Consensus 210 dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPdi----- 284 (344)
T PRK03437 210 DVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPDI----- 284 (344)
T ss_pred CceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchhh-----
Confidence 99999999999999999999999 999999999999999999999999999999997642 59999999999998
Q ss_pred CCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAV 429 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 429 (443)
||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| +| | .++|+||+|+|
T Consensus 285 AGk~i-ANP~a~IlS~amML~~lg~~~-------~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~~ai 340 (344)
T PRK03437 285 AGQGI-ADPTAAILSVALLLDHLGEED-------AAARIEAAVEADLAER-----GK----M-------GRSTAEVGDRI 340 (344)
T ss_pred cCCCc-cChHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHHHHH
Confidence 99999 999999999999999998654 8999999999999998 45 6 79999999999
Q ss_pred HHHH
Q 040623 430 TETL 433 (443)
Q Consensus 430 ~~~l 433 (443)
+++|
T Consensus 341 ~~~l 344 (344)
T PRK03437 341 AARL 344 (344)
T ss_pred HhhC
Confidence 9875
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3e-100 Score=772.04 Aligned_cols=321 Identities=20% Similarity=0.194 Sum_probs=296.5
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
++|++||||||||||++++++++.+.+++|+|+++++|++ |.++|++++++|+++|++||||+++|.+.
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~------ 99 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG------ 99 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc------
Confidence 6799999999999999999999988899999999999986 58999999999999999999999999643
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
..+|+|+.||++||||+|+||+ |++||+++| ++++|+||||||| ||+|++. + +
T Consensus 100 ---~~~s~~l~LR~~ldLyaNvRP~------k~~pg~~~~-----------~~~iD~viVREnt-eG~Y~g~---~---~ 152 (360)
T PLN00123 100 ---GVSSLNVQLRKELDLFASLVNC------FNLPGLPTR-----------HENVDIVVIRENT-EGEYSGL---E---H 152 (360)
T ss_pred ---CccchHHHHHHHcCCEEEEEEe------ecCCCCCCc-----------cCCCCEEEEEeCC-Cceeccc---e---e
Confidence 2467799999999999999998 888899877 4789999999999 9999964 1 1
Q ss_pred eeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
... .+++ ++++|||+++|||+|+||+||++|++ |||++||+|||+.+||||+++|+|| +++|| +|+
T Consensus 153 ----~~~-~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~ev-a~eyP------dV~ 220 (360)
T PLN00123 153 ----EVV-PGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREV-AKKYP------GIK 220 (360)
T ss_pred ----ecC-CCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHH-HhhCC------Cce
Confidence 111 3556 66999999999999999999999865 7999999999999999999999999 68999 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEeccc--ccc--cccchhhc
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVHQ 349 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~H--GSA--pdi~~~~i 349 (443)
++++|||++|||||++|++| ||||+|||||||||+||+|+||+||+||+|+|++. +||||+| ||| |||
T Consensus 221 ~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~--a~FEpvh~hGSA~~PdI----- 293 (360)
T PLN00123 221 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADH--AVFEQGASAGNVGNEKL----- 293 (360)
T ss_pred EeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCc--eEEEecccCCCcCCccc-----
Confidence 99999999999999999999 99999999999999999999999999999999884 9999977 999 998
Q ss_pred CCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDA 428 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 428 (443)
||||+ |||+|+|||++|||+|+|+.+ +|++|++||.+++++| ++|+||| | .+||+||+|+
T Consensus 294 AGk~i-ANP~a~IlS~amML~~lG~~~-------~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~a 354 (360)
T PLN00123 294 VEQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVDA 354 (360)
T ss_pred cCCCc-cChHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHH
Confidence 99999 999999999999999998654 8999999999999999 8999998 7 7999999999
Q ss_pred HHHHH
Q 040623 429 VTETL 433 (443)
Q Consensus 429 V~~~l 433 (443)
|+++|
T Consensus 355 i~~~l 359 (360)
T PLN00123 355 VIANL 359 (360)
T ss_pred HHHhh
Confidence 99987
No 20
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.5e-99 Score=764.98 Aligned_cols=325 Identities=20% Similarity=0.214 Sum_probs=298.0
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
++|++|||||||||||+++++++.+.+++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~------ 75 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGK------ 75 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCcccc------
Confidence 4699999999999999999999988899999999999997 67899999999999999999999999998532
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
..++|+|+.||++||||+|+||+ |++||+++| ++++|++|+|||| ||+|++. + +
T Consensus 76 --~~~~s~~~~lR~~ldlyanvRP~------k~~pg~~~~-----------~~~iD~vivREnt-eG~Y~g~---~---~ 129 (333)
T TIGR00175 76 --GGHRSLNVALRKELDLYANVVHC------KSLPGFKTR-----------HEDVDIVIIRENT-EGEYSGL---E---H 129 (333)
T ss_pred --ccccchhHHHHHHcCCEEEeEEe------cCCCCCCCC-----------CCCcCEEEEEEeC-CCcccce---e---E
Confidence 12678899999999999999997 888898876 4789999999999 9999964 1 1
Q ss_pred eeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
... ++++ +++++|+++++||+|+||+||++|++ |||++||+|||+.|||+|+++|+|+ +++|| +|+
T Consensus 130 ----~~~-~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp------~v~ 197 (333)
T TIGR00175 130 ----ESV-PGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREV-AKEYP------DIT 197 (333)
T ss_pred ----ecc-CCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHH-HHHCC------CCe
Confidence 111 4566 56999999999999999999999976 6999999999999999999999999 67899 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecc-cccccccchhhcCCC
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKGG 352 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~-HGSApdi~~~~iAGk 352 (443)
++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+ ||||||| |||
T Consensus 198 ~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSApdi-----aGk 270 (333)
T TIGR00175 198 FESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGPDI-----AGQ 270 (333)
T ss_pred eeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCchhh-----CCC
Confidence 99999999999999999999 99999999999999999999999999999999885 899995 5999998 999
Q ss_pred CcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHHH
Q 040623 353 ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVTE 431 (443)
Q Consensus 353 ~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 431 (443)
|+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| .+|+||| | ++||+||+++|++
T Consensus 271 ~i-aNP~a~Ils~ammL~~lG~~~-------~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~~ 331 (333)
T TIGR00175 271 NI-ANPTALILSSVMMLNHLGLKE-------HADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVIK 331 (333)
T ss_pred Cc-cChHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHHh
Confidence 99 999999999999999998654 8999999999999999 8999998 7 7999999999998
Q ss_pred HH
Q 040623 432 TL 433 (443)
Q Consensus 432 ~l 433 (443)
+|
T Consensus 332 ~l 333 (333)
T TIGR00175 332 RL 333 (333)
T ss_pred hC
Confidence 75
No 21
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-100 Score=743.97 Aligned_cols=326 Identities=25% Similarity=0.309 Sum_probs=303.8
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
+++++||||||||||++++++++.+++++|+|+++|++...-..++..+|++++++++++++.||||+.||.+.
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 35999999999999999999999999999999999998764445888999999999999999999999999875
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
+.+|+|++|||+|+||||+||+ ++++|.++| |+++|+|++|||| |++|++ +|+
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc------~SieG~Kt~-----------Y~~vD~V~IRENT-EgeYsg------iEh 162 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC------KSIEGYKTP-----------YDDVDLVIIRENT-EGEYSG------IEH 162 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec------ccccCCcCC-----------CCCceEEEEecCC-cccccc------cee
Confidence 5789999999999999999996 777799988 9999999999999 999995 243
Q ss_pred eeeeecCCcceEEE-EeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTGAGGVALS-MYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~~~~va~~-~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
.+ . ++|+++ +.+|+.+++||++|||+||++++| +||++||+|||+.|||||+++|+|+ +++|| +|.
T Consensus 163 ~v----v-pGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~-a~~y~------dI~ 230 (365)
T KOG0785|consen 163 QV----V-PGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREV-AKKYP------DIK 230 (365)
T ss_pred ec----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHH-hhhCC------ccc
Confidence 22 2 568876 999999999999999999999988 8999999999999999999999999 79999 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCC
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 353 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~ 353 (443)
|+++|+|++|++|+++|+.| |+|+||||||||||+||+|+||||++||+||| ++ .++||++||||||| ||||
T Consensus 231 ~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPDI-----AGkd 303 (365)
T KOG0785|consen 231 FEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPDI-----AGKD 303 (365)
T ss_pred hhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCccc-----ccCC
Confidence 99999999999999999999 99999999999999999999999999999999 55 58999999999998 9999
Q ss_pred cccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHHHH
Q 040623 354 TSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVTET 432 (443)
Q Consensus 354 i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 432 (443)
+ |||+|++||++|||+|+| ++++|++|++||.+++++| ++|+||| | +++|+||+++|+++
T Consensus 304 l-ANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~~ 364 (365)
T KOG0785|consen 304 L-ANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCDR 364 (365)
T ss_pred c-CCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHhc
Confidence 9 999999999999999986 4459999999999999999 8999999 7 89999999999987
Q ss_pred H
Q 040623 433 L 433 (443)
Q Consensus 433 l 433 (443)
|
T Consensus 365 l 365 (365)
T KOG0785|consen 365 L 365 (365)
T ss_pred C
Confidence 5
No 22
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=2.7e-98 Score=751.91 Aligned_cols=320 Identities=21% Similarity=0.206 Sum_probs=297.2
Q ss_pred EEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhhhh
Q 040623 39 IVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLK 118 (443)
Q Consensus 39 I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~~~ 118 (443)
|++|||||||||||+++++++.+.+++|+|+++++|++++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~-------- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP-------- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC--------
Confidence 689999999999999999999877999999999999999999999999999999999999999999999743
Q ss_pred ccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcceeee
Q 040623 119 RMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEV 198 (443)
Q Consensus 119 ~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~~~ 198 (443)
++.|+|+.|||+||||+|+||+ |++||+++|. ..++|+||+|||| ||+|++... .
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~------r~~~g~~~~~----------~~~iD~vivREnt-eG~Y~g~~~------~- 127 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPA------KSLPGIPDLY----------PNGKDIVIVRENT-EGLYAGFEF------G- 127 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEe------eccCCCCCCC----------CCCCCEEEEEeCc-CCeeecccc------c-
Confidence 3578899999999999999998 8888998762 1289999999999 999996411 0
Q ss_pred eeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEee
Q 040623 199 YSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEH 277 (443)
Q Consensus 199 ~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~ 277 (443)
. .+++ +++++|+++++||+|+||+||++|++|||++||+|||+.|+|||+++|+|| +++|| |++++
T Consensus 128 ----~-~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp-------v~~~~ 194 (322)
T TIGR02088 128 ----F-SDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREI-AKRYG-------VEYRD 194 (322)
T ss_pred ----c-CcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHH-HHhCC-------eeeee
Confidence 1 2355 669999999999999999999999889999999999999999999999999 68998 99999
Q ss_pred eehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCccc
Q 040623 278 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETST 356 (443)
Q Consensus 278 ~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~A 356 (443)
++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||.||||||| |||++ |
T Consensus 195 ~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~fep~hGsa~di-----aG~~~-a 266 (322)
T TIGR02088 195 MYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDRK--ALFEPVHGSAPDI-----AGKGI-A 266 (322)
T ss_pred eeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCCc--eEEecCCCChhHh-----CCCCC-C
Confidence 99999999999999999 99999999999999999999999999999999874 9999999999998 99999 9
Q ss_pred ChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHH
Q 040623 357 NSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVT 430 (443)
Q Consensus 357 NP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 430 (443)
||+|||+|++|||+|+|+.+ +|++|++||.+++++|.+|+||| | +++|+||+|+|+
T Consensus 267 Np~a~i~A~~~~l~~~g~~~-------~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 267 NPTAAILSVAMMLDYLGELE-------KGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred ChHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 99999999999999998654 99999999999999999999998 7 799999999984
No 23
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-98 Score=772.20 Aligned_cols=350 Identities=22% Similarity=0.228 Sum_probs=301.8
Q ss_pred EEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCC--cccHHHHHHHHhcCeEEEecccCCCc
Q 040623 39 IVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDD--QVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 39 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|++|||||||||||++++++|.+. +++|+|+++++|+++|+++|+ ++|++++++|+++|++||||++||..
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888632 259999999999999999999 99999999999999999999999943
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
. +++|+|+.||++||||||+||+ |++||+++|+. + .+++|+||+|||| ||+|++..
T Consensus 102 ~---------~~~s~~l~LR~~ldLyaNvRPv------k~~pgl~~plk--~------~~~iD~vIvREnt-eG~Y~g~~ 157 (409)
T PRK07006 102 G---------GIRSLNVALRQELDLYVCLRPV------RYFKGVPSPVK--R------PEDTDMVIFRENS-EDIYAGIE 157 (409)
T ss_pred c---------CccChHHHHHHHcCCEEEEEEE------ecCCCCCCCCC--C------CCCCCEEEEEecc-CCeecccc
Confidence 2 3568899999999999999998 88889998862 1 3689999999999 99999752
Q ss_pred CC-Ccce-eeeeeec----C------CcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHH
Q 040623 190 LN-QKTE-WEVYSFT----G------AGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDI 255 (443)
Q Consensus 190 g~-~~~~-~~~~~~~----~------~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~ 255 (443)
.. +... .....+. + ..+++ ++++||+++++||+|+||+||++|++ |||++||+|||+.|||+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~ 237 (409)
T PRK07006 158 WKAGSAEAKKVIKFLQEEMGVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDW 237 (409)
T ss_pred cccCCcccceeeeccccccCcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHH
Confidence 10 0000 0000000 0 12345 56999999999999999999999976 799999999999999999998
Q ss_pred HHHHHHhhccCcccc-------------CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCccccc
Q 040623 256 FQEVYEAQWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 321 (443)
Q Consensus 256 ~~ev~a~eyp~~f~~-------------~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlap 321 (443)
+.||++++||++|.. .+|++++++||++|||||++|++| ||||+|||||||||++|+++|||||+|
T Consensus 238 ~~eva~~ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlap 317 (409)
T PRK07006 238 GYQLAEEEFGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAP 317 (409)
T ss_pred HHHHHHHHhhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcc
Confidence 889965589555543 399999999999999999999999 999999999999999999999999999
Q ss_pred ceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCc
Q 040623 322 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKM 401 (443)
Q Consensus 322 Sanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~ 401 (443)
|+|+|++ ++||||+||||||| ||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|++
T Consensus 318 Sanig~~--~a~FEpvHGSAPdi-----AGk~i-ANP~a~IlS~amML~~lG~~~-------~A~~Ie~Av~~~l~~G~~ 382 (409)
T PRK07006 318 GANINDG--HAIFEATHGTAPKY-----AGLDK-VNPGSVILSAEMMLRHMGWTE-------AADLIIKSMEKTIASKTV 382 (409)
T ss_pred cceeCCC--ceEEECCCCcchhh-----CCCCC-cChHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHhcCCc
Confidence 9999976 49999999999998 99999 999999999999999998755 899999999999999999
Q ss_pred ccchhhhcc-CCCCCCCCccCHHHHHHHHHHHH
Q 040623 402 TKDLALLIH-GPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 402 T~Dlg~~~~-G~~~~~~~~~sT~e~~daV~~~l 433 (443)
|+|||.... | +.++|+||+|+|+++|
T Consensus 383 T~Dl~~~~~gg------~~~~T~e~~daI~~~l 409 (409)
T PRK07006 383 TYDFARLMEGA------TEVKCSEFGDALIKNM 409 (409)
T ss_pred cccccccCCCC------cccCHHHHHHHHHhhC
Confidence 999951100 3 2489999999999875
No 24
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.4e-97 Score=768.81 Aligned_cols=351 Identities=22% Similarity=0.234 Sum_probs=300.4
Q ss_pred EEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccC--CcccHHHHHHHHhcCeEEEecccCCCc
Q 040623 39 IVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATD--DQVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 39 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g--~~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|++|||||||||||+++++++.+. +++|+|+++++|+++|+++| +++|++++++|+++|++||||++||..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888622 15999999999999999999 999999999999999999999999953
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
. +++|+|+.||++||||||+||+ +++||+++|+. ...++|++|||||| ||+|++..
T Consensus 109 ~---------~~~s~~l~LR~~ldLyaNvRP~------k~~pgl~s~~~--------~~~~vDivIvREnt-eG~Y~g~~ 164 (416)
T TIGR00183 109 G---------GIRSLNVALRQELDLYVCLRPV------RYYKGVPSPVK--------HPEKVDMVIFRENT-EDIYAGIE 164 (416)
T ss_pred c---------cccCcHHHHHHHcCCEEEEeEe------ecCCCCCCcCC--------CCCCCCEEEEEeCC-CCcccccc
Confidence 2 3678899999999999999997 78889988863 13689999999999 99999752
Q ss_pred CCCcce--eeeeee--c--C------CcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHH
Q 040623 190 LNQKTE--WEVYSF--T--G------AGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDI 255 (443)
Q Consensus 190 g~~~~~--~~~~~~--~--~------~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~ 255 (443)
...... +....+ . + +.+++ ++++||+++++||+|+||+||++|++ +||++||+|||+.|||+|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~ 244 (416)
T TIGR00183 165 WAEGSEEAKKLIRFLQNELGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDW 244 (416)
T ss_pred cccCcccceeeecccccccCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHH
Confidence 100000 000000 0 1 12455 56999999999999999999999965 899999999999999999999
Q ss_pred HHHHHHhhccCcccc-------------CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCccccc
Q 040623 256 FQEVYEAQWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 321 (443)
Q Consensus 256 ~~ev~a~eyp~~f~~-------------~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlap 321 (443)
|.||++++||.+|.+ .+|+++|++||++|||||++|++| ||||+|||||||||++|+++||+||+|
T Consensus 245 ~~eva~~ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlap 324 (416)
T TIGR00183 245 GYELAKKEFGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAP 324 (416)
T ss_pred HHHHHHHHHhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcc
Confidence 999954478433332 189999999999999999999999 999999999999999999999999999
Q ss_pred ceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCc
Q 040623 322 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKM 401 (443)
Q Consensus 322 Sanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~ 401 (443)
|+|+|++ .+||||+||||||| ||||+ |||+|+|||++|||+|+|+.+ +|++|++||.+++++|++
T Consensus 325 Sanig~~--~alFEp~HGSAPdi-----AGk~i-ANP~a~IlS~amML~~lg~~~-------~A~~Ie~AV~~~l~~G~~ 389 (416)
T TIGR00183 325 GANIGDE--IGIFEATHGTAPKY-----AGQDK-VNPGSIILSGEMMLEHMGWKE-------AADLIKKAMEKAIASKIV 389 (416)
T ss_pred eeeeCCC--ceEEECCCCCchhh-----cCCCC-CCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCc
Confidence 9999987 49999999999998 99999 999999999999999998654 999999999999999999
Q ss_pred ccchhhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 402 TKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 402 T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
|+||+....| .+.++|+||+|+|+++|
T Consensus 390 T~Dl~~~~gg-----~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 390 TYDFARLMDG-----AKEVKCSEFAEAIIENM 416 (416)
T ss_pred ccccccccCC-----CcccCHHHHHHHHHhhC
Confidence 9999411003 12489999999999875
No 25
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.6e-97 Score=759.59 Aligned_cols=351 Identities=20% Similarity=0.195 Sum_probs=297.7
Q ss_pred EEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCC--cccHHHHHHHHhcCeEEEecccCCCc
Q 040623 39 IVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDD--QVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 39 I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|++|||||||||||++++++|.+. +++|+|.++++|+++++++|+ +||++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888632 258999999999999999996 89999999999999999999999964
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
. +.+|+|+.|||+||||+|+||+ |++||+++|+. ...++|+||+|||| ||+|++..
T Consensus 111 ~---------g~~s~~l~LRk~ldLyaNvRPv------r~~pgl~sp~k--------~~~~iD~vIvRENT-EGlY~G~~ 166 (474)
T PRK07362 111 G---------GIRSLNVALRQIFDLYSCVRPC------RYYAGTPSPHK--------NPEKLDVIVYRENT-EDIYMGIE 166 (474)
T ss_pred c---------CccchHHHHHHHcCCceeeeEe------eccCCCCCccc--------CCCCCCEEEEEECC-Cceecccc
Confidence 3 3568899999999999999998 88889999863 13589999999999 99999752
Q ss_pred CCCcceee--e----e----------eecC-CcceE-EEEeecHHHHHHHHHHHHHHHHhCC---CCEEEEeCCcccccc
Q 040623 190 LNQKTEWE--V----Y----------SFTG-AGGVA-LSMYNTDESICSFAEASMNTAYQKK---WPLYLSTKNTILKNY 248 (443)
Q Consensus 190 g~~~~~~~--~----~----------~~~~-~~~va-~~~~~T~~~~eRiar~AFe~A~~r~---~kVt~v~KaNvl~~t 248 (443)
.......+ . . ...+ ..+++ .++++|+++++||+|+||+||++|+ ++||+|||+|||++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t 246 (474)
T PRK07362 167 WEAGDEIGDKLIKHLNEEVIPASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYT 246 (474)
T ss_pred cccccccchhcccccccccccccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccc
Confidence 11000000 0 0 0001 12355 5699999999999999999999983 479999999999999
Q ss_pred chHHHHHHHHHHHhhccC---------------cccc-------------------------------------------
Q 040623 249 DGRFKDIFQEVYEAQWKS---------------KFEA------------------------------------------- 270 (443)
Q Consensus 249 dglf~~~~~ev~a~eyp~---------------~f~~------------------------------------------- 270 (443)
+|+|++|+.||+.++|++ +|+.
T Consensus 247 ~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (474)
T PRK07362 247 EGAFRDWGYELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNG 326 (474)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccc
Confidence 999999988995435521 1111
Q ss_pred ---CCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccch
Q 040623 271 ---AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 346 (443)
Q Consensus 271 ---~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~ 346 (443)
.+|.+++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+|||||||
T Consensus 327 ~~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~--a~FEpvHGSAPdI-- 402 (474)
T PRK07362 327 KWKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNA--AIFEATHGTAPKH-- 402 (474)
T ss_pred cCCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCc--eeeecCCCCchhh--
Confidence 258999999999999999999999 99999999999999999999999999999999884 9999999999998
Q ss_pred hhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHH
Q 040623 347 VHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 347 ~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++|.+|+|||+.++. ..+.+||+||+
T Consensus 403 ---AGk~i-ANP~A~ILS~aMML~~LG~~~-------~A~~I~~AV~~vl~~g~~T~Dlg~~~~~----~~~~~sT~E~~ 467 (474)
T PRK07362 403 ---AGLDR-INPGSVILSGVMMLEYLGWQE-------AADLITKGLSAAIANKQVTYDLARLMEP----PVDPLSCSEFA 467 (474)
T ss_pred ---cCCCC-cCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHcCCcccCCCCcccc----CCCCcCHHHHH
Confidence 99999 999999999999999998754 9999999999999999999999821100 01368999999
Q ss_pred HHHHHH
Q 040623 427 DAVTET 432 (443)
Q Consensus 427 daV~~~ 432 (443)
++|+++
T Consensus 468 ~aIi~~ 473 (474)
T PRK07362 468 EAIISH 473 (474)
T ss_pred HHHHhc
Confidence 999986
No 26
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.9e-95 Score=741.46 Aligned_cols=338 Identities=26% Similarity=0.300 Sum_probs=290.2
Q ss_pred cEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhh
Q 040623 38 PIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVK 113 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~ 113 (443)
+|++||||||||||++++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.....
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~- 79 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGI- 79 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSH-
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccccc-
Confidence 4999999999999999999888655 58999999999999999999999999999999999999999999974311
Q ss_pred hhhhhccCCCcchhhhhhcCceEEeeecccccCCccc--CCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 114 EFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLV--SGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 114 ~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~--~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
++.. .++.||+.||||+|+||+ +++ ++..+|+. ++..+++|++|+|||| ||+|++.
T Consensus 80 -----~~~~-~l~~lR~~ldl~anvRp~------~~~~~~~~~~~~~------~~~~~~iDivivREnt-eG~Y~g~--- 137 (348)
T PF00180_consen 80 -----RSEN-GLLKLRKELDLYANVRPV------RSFPGPGVPSPLK------DEIPEGIDIVIVRENT-EGLYSGI--- 137 (348)
T ss_dssp -----SHHH-HHHHHHHHTTHHEEEEEE------EEECETTGGSSBS------HHHHTTSEEEEEEESS-SGGGGEE---
T ss_pred -----ccHH-HHHHHHHhcccceeeEEE------EEecccccccccc------ccccCcceEEEecccc-cCcccCC---
Confidence 1122 338999999999999997 666 45567752 1123579999999999 9999963
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQK-KWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
++.......+++++ .++++|+++++||+|+||+||++| +++||++||+|||+.++ +|+++|+|+++++||
T Consensus 138 ---~~~~~~~~~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp---- 209 (348)
T PF00180_consen 138 ---EHEIGDGGTPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYP---- 209 (348)
T ss_dssp ---EEEECSEEEGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHT----
T ss_pred ---CCceeeccCCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcc----
Confidence 22111100113466 679999999999999999999999 55999999999999998 999999999544999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~ 348 (443)
+|++++++||+++|+||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 210 --~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSApdi---- 282 (348)
T PF00180_consen 210 --DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAPDI---- 282 (348)
T ss_dssp --TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTGGG----
T ss_pred --eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccccc----
Confidence 99999999999999999999999 99999999999999999999999999999999655 69999999999998
Q ss_pred cCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHH
Q 040623 349 QKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFID 427 (443)
Q Consensus 349 iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 427 (443)
|||++ |||+|||||++|||+| +|+. +.|++|++||.+++++|++|+||| |. ..+.++|+||+|
T Consensus 283 -aGk~~-aNP~a~Ils~a~mL~~~lg~~-------~~a~~i~~Av~~~l~~g~~T~Dlg----g~---~~~~~~T~e~~d 346 (348)
T PF00180_consen 283 -AGKGI-ANPIAMILSAAMMLEHSLGLP-------EAADAIEKAVEKVLEEGIRTPDLG----GS---ATTAVSTEEFGD 346 (348)
T ss_dssp -TTSSH-S-THHHHHHHHHHHHHHHTHH-------HHHHHHHHHHHHHHHTTEEBGGGH----TT---TCEEBHHHHHHH
T ss_pred -cCCcc-cCcHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHcCCCCcccc----CC---CCCCCCHHHHHh
Confidence 99999 9999999999999999 7754 499999999999999999999999 51 023459999999
Q ss_pred HH
Q 040623 428 AV 429 (443)
Q Consensus 428 aV 429 (443)
+|
T Consensus 347 aV 348 (348)
T PF00180_consen 347 AV 348 (348)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.9e-93 Score=722.02 Aligned_cols=379 Identities=35% Similarity=0.475 Sum_probs=353.1
Q ss_pred EEECCCcchHHHHHHHHHHHhcCCCceE-EEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhhhh
Q 040623 40 VEMDGDEMTRVIWKLIKDKLINPFLELD-IKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLK 118 (443)
Q Consensus 40 ~vi~GDGIGpEv~~~~~~~~~~~~~~i~-~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~~~ 118 (443)
+.|.||+|.+.+|+.+++.|+.++++++ |++||+|.+++++|.+++.-|+.+++++++|++|||+.||+..++++++++
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 6799999999999999999999999995 999999999999999999999999999999999999999999899999999
Q ss_pred ccCCCcchhhhhhcCc-eEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCcceee
Q 040623 119 RMWKSPNGTIRNILNG-TVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWE 197 (443)
Q Consensus 119 ~~~~s~~~~LR~~ldl-yanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~~ 197 (443)
+.|+|||.+||+.||. .+++.||.|+||| |||..|+++.||+.+|.|+. |+++..+++++.+|.+++|++++++.
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999999997 89999999999999999999 99999999999999999887777777
Q ss_pred eeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc-----CC
Q 040623 198 VYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA-----AG 272 (443)
Q Consensus 198 ~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~-----~~ 272 (443)
+.++++.++++.++++|.+.++||+|+||+||++|+++||++||+||||+++|+|+ +|+|||+++|+++|++ .+
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 77787446788899999999999999999999999999999999999999999998 9999976899888887 45
Q ss_pred eEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCC--Cc-eEEEecccccccccchhh
Q 040623 273 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 273 I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~--~~-~a~FEp~HGSApdi~~~~ 348 (443)
|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||||+++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 7899999999999999999999 9999999999999999999999999999999955 52 489999999999999999
Q ss_pred cCCCC-cccChhhHHHHHHHHHHhhcccCCCc-chHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHH
Q 040623 349 QKGGE-TSTNSIASIFAWSQGLAHRAKLDGNP-RLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 349 iAGk~-i~ANP~A~IlS~ammL~~lG~~~~~~-~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
++||+ + |||+|+|||++|||+|+|++++++ +|.++|++|++||.+++++|.+|+||+ | ...++|+||+
T Consensus 317 ~~Gk~~~-ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g-----~~~~tT~ef~ 386 (393)
T PLN00096 317 LRGEETS-LNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----G-----AGGLTTEQFI 386 (393)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----C-----CCCCCHHHHH
Confidence 99996 8 999999999999999997655543 578899999999999999999999996 3 1268999999
Q ss_pred HHHHHHH
Q 040623 427 DAVTETL 433 (443)
Q Consensus 427 daV~~~l 433 (443)
++|+++|
T Consensus 387 daI~~~L 393 (393)
T PLN00096 387 DAVAEEL 393 (393)
T ss_pred HHHHHhC
Confidence 9999875
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.9e-86 Score=659.80 Aligned_cols=365 Identities=36% Similarity=0.458 Sum_probs=326.3
Q ss_pred cEEEECCCcchHHHHHHHHHHHhc----CC---CceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623 38 PIVEMDGDEMTRVIWKLIKDKLIN----PF---LELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV 110 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~~~~~~~~----~~---~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~ 110 (443)
-|.++.||||||||++++.+++.+ ++ .+|+|.++++|.++++.||++||+||+++++++.+.+|||++||-+.
T Consensus 20 iiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg~ 99 (407)
T COG0538 20 IIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVGK 99 (407)
T ss_pred ccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcccc
Confidence 477999999999999999877653 35 89999999999999999999999999999999999999999999654
Q ss_pred hhhhhhhhccCCCcchhhhhhcCceEEeeecccc-cCCcccCC-CCCceeeeecccCCCCCCccEEEecCCceeEEEEeC
Q 040623 111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICK-NIPRLVSG-WTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPD 188 (443)
Q Consensus 111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~-~ip~~~~g-~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~ 188 (443)
+|+|+|++||+.||||+|+|||.|. ++|+..|+ |..|++++|||++|.|.++||..-.++..+..++.+
T Consensus 100 ---------g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~ 170 (407)
T COG0538 100 ---------GWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLE 170 (407)
T ss_pred ---------cccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhh
Confidence 7999999999999999999999988 99999999 889999999999999999999887777655566543
Q ss_pred CCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhh----
Q 040623 189 GLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQ---- 263 (443)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~e---- 263 (443)
..- -+...+++.+.+++. +++|+++++|++|.||+||.+++| .||++||.||||.|+|-|++|++|||.++
T Consensus 171 ~e~---~~~~i~~pe~~GIgi-kp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~ 246 (407)
T COG0538 171 DEM---GVKKIRFPEDSGIGI-KPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGD 246 (407)
T ss_pred ccc---ccceEecCCCCceEE-EecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccc
Confidence 221 122334444345544 999999999999999999999986 89999999999999999999999997664
Q ss_pred ----ccCccccCC----eEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEE
Q 040623 264 ----WKSKFEAAG----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 334 (443)
Q Consensus 264 ----yp~~f~~~~----I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~F 334 (443)
|..+|...+ |.++|+++|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+||+|||+. +++|
T Consensus 247 ~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~f 324 (407)
T COG0538 247 EVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEF 324 (407)
T ss_pred cccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEE
Confidence 566777778 9999999999999999999999 9999999999999999999999999999999944 5999
Q ss_pred ecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCC
Q 040623 335 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQV 414 (443)
Q Consensus 335 Ep~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~ 414 (443)
||+|||||+| |||+. +||+|.||||.|||+|+||++ +|+.|++||..++++|+.|+||+.++.|
T Consensus 325 EA~HGTapk~-----aG~~~-~Np~a~Ils~~~ml~~~Gw~e-------aa~li~~a~~~ti~~~~vT~DlArl~~~--- 388 (407)
T COG0538 325 EATHGTAPKY-----AGKDS-TNPIASILSGTMMLRHRGWLE-------AADLIEKAVEDTIESGKVTYDLARLMGG--- 388 (407)
T ss_pred EeccCccccc-----cCcCC-CCcHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHhCceeHHHHHhhCC---
Confidence 9999999999 89999 999999999999999999988 8999999999999999999999866544
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 040623 415 ARPQYLNTEEFIDAVTETLK 434 (443)
Q Consensus 415 ~~~~~~sT~e~~daV~~~l~ 434 (443)
....++|+||+|+|+++|+
T Consensus 389 -~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 389 -AKRYLSTSEFADAIIENLK 407 (407)
T ss_pred -CccceeHHHHHHHHHHhcC
Confidence 1237999999999999873
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-84 Score=637.84 Aligned_cols=331 Identities=21% Similarity=0.212 Sum_probs=298.6
Q ss_pred ccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623 31 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV 110 (443)
Q Consensus 31 ~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~ 110 (443)
-|+..++++++|||||||||++.++.+++.+.++|++|+++++++ -.+.++..++|+++++++++++|||.+.||..+
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~--~~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSG--SNKESSEDLDEAVESIKRNKVALKGNIETPDLP 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccC--CccccchhHHHHHHHHHhcceeEeecccCCCCc
Confidence 567778899999999999999999999999999999999999987 233455679999999999999999999999321
Q ss_pred hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
.+..|.|+.||++||||||+-.+ +++||+++. +.++|+|++|||| ||+|++
T Consensus 115 --------g~~~s~n~~LR~~LDLyanvv~~------~slpG~~tR-----------h~~vDiviIRENT-EGEYs~--- 165 (375)
T KOG0784|consen 115 --------GGAKSLNVKLRKELDLYANVVHC------KSLPGVKTR-----------HENVDIVIIRENT-EGEYSG--- 165 (375)
T ss_pred --------cchhhhHHHHHHhhhhhhheeee------eccCCcccc-----------cCCccEEEEecCC-cccccc---
Confidence 14678999999999999999985 667798754 5699999999999 999994
Q ss_pred CCcceeeeeeecCCcceEEE-EeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 191 NQKTEWEVYSFTGAGGVALS-MYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va~~-~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
+||+ +. ++|.++ +++|+..++||+||||+||.+++| |||+|||||+||..||||+++|+|| ++.||
T Consensus 166 ---LEHE----~V-pGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~ev-a~~Yp--- 233 (375)
T KOG0784|consen 166 ---LEHE----SV-PGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEV-AKKYP--- 233 (375)
T ss_pred ---cccc----cC-cchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHH-HhcCC---
Confidence 3432 22 567766 999999999999999999999988 8999999999999999999999999 66799
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecc--cccccccc
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA--HGTVTRHY 345 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~--HGSApdi~ 345 (443)
+|+++.|+||++|||||++|+|| |+|+|||||+|+|.+||+|+||.|+.|++|+|+++ ++|||. |+. .+
T Consensus 234 ---~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~y--AVFE~g~r~~~-~~-- 305 (375)
T KOG0784|consen 234 ---DITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDY--AVFEPGARHTG-TS-- 305 (375)
T ss_pred ---CccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccce--EEecccccccc-hh--
Confidence 99999999999999999999999 99999999999999999999999999999999996 999993 544 23
Q ss_pred hhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHH
Q 040623 346 RVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEE 424 (443)
Q Consensus 346 ~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e 424 (443)
++||++ |||+|||||++|||+||| ++.+|++|++||.+++.+| ++|+||| | ..||++
T Consensus 306 ---~~g~~~-aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~d 363 (375)
T KOG0784|consen 306 ---IAGKNI-ANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQD 363 (375)
T ss_pred ---hhcccc-cCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHH
Confidence 499999 999999999999999987 4469999999999999999 8999999 7 899999
Q ss_pred HHHHHHHHHH
Q 040623 425 FIDAVTETLK 434 (443)
Q Consensus 425 ~~daV~~~l~ 434 (443)
|+++|+++|+
T Consensus 364 vi~avI~~l~ 373 (375)
T KOG0784|consen 364 VIDAVIANLR 373 (375)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 30
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-80 Score=586.95 Aligned_cols=345 Identities=21% Similarity=0.192 Sum_probs=304.2
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
+|+|+++|||||||||+..+++++... +++|+|+++++|+++.+.+|.++|+|++++.|++|++|+|++|.|.|+.
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 478999999999999999999888755 7899999999999999999999999999999999999999999999863
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
++.+++..+ +.||+.|.+|||+||+ ..+|.++. .+|| +++..+++|+++|||-| -|+|+++.-+
T Consensus 84 ----~~lrpe~gl-l~ir~~lkvfanlrp~--~~~~qlvd--~s~l------k~e~aeg~d~mvvrel~-ggiyfge~r~ 147 (363)
T KOG0786|consen 84 ----NHLRPEMGL-LKIRRDLKVFANLRPA--TVLPQLVD--ASTL------KKEVAEGVDMMVVRELT-GGIYFGEPRN 147 (363)
T ss_pred ----CCcChhhhH-HHHHHHHHHHhcCCcc--hhhHhhhc--cccc------cHHHhcCcceEEeeeec-CceeecCccc
Confidence 355566664 9999999999999994 44442221 2565 24457899999999998 9999975321
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC--CEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW--PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~--kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
..+ ++++ ++.+|+-+++.||+|.||+.|++|+. ++|+++|+||+. ++.|||+.+.+..++|||
T Consensus 148 ---------eng-~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP--- 213 (363)
T KOG0786|consen 148 ---------ENG-EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYP--- 213 (363)
T ss_pred ---------CCC-cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCC---
Confidence 113 5677 88999999999999999999999984 999999999998 889999999988899999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce--EEEecCCcccchhhhhhhhcCCcccccceeeC-----CCCceEEEecccccc
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGKTIEAEAAHGTV 341 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F--Viv~~NlfGDIlSDlaA~l~GglGlapSanig-----~~~~~a~FEp~HGSA 341 (443)
++++.|+|||+++|+||++|.+| +|||.|+||||+||.++.+.||+||.|||+++ ..+ +++|||+||||
T Consensus 214 ---~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL~EPiHGSA 289 (363)
T KOG0786|consen 214 ---DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGLFEPIHGSA 289 (363)
T ss_pred ---CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-CcccccCCCCC
Confidence 99999999999999999999999 99999999999999999999999999999998 344 79999999999
Q ss_pred cccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccC
Q 040623 342 TRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLN 421 (443)
Q Consensus 342 pdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~s 421 (443)
||| |||++ +||+|+|||++|||.|- ++ ++++|++||+||..++..|.+|.||| | ..|
T Consensus 290 PDi-----agk~k-vNPlaTILSAamlLkyg--Ln----~pkeakaIEdAV~kvLd~G~rTgDlg----g-------~~s 346 (363)
T KOG0786|consen 290 PDI-----AGKDK-VNPLATILSAAMLLKYG--LN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G-------PGS 346 (363)
T ss_pred CCc-----CCCCc-cChHHHHHHHHHHHHhc--CC----ChhhHHHHHHHHHHHHhccccccccC----C-------CCc
Confidence 998 99999 99999999999999995 66 67799999999999999999999999 5 667
Q ss_pred HHHHHHHHHHHHHHHh
Q 040623 422 TEEFIDAVTETLKERM 437 (443)
Q Consensus 422 T~e~~daV~~~l~~~~ 437 (443)
|.+.++++.+.+.+.+
T Consensus 347 t~~~~kav~EEv~Kil 362 (363)
T KOG0786|consen 347 TLVGCKAVGEEVLKIL 362 (363)
T ss_pred chhhHHHHHHHHHHhc
Confidence 7777777777765543
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9.3e-75 Score=563.12 Aligned_cols=411 Identities=77% Similarity=1.233 Sum_probs=391.6
Q ss_pred cccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCC
Q 040623 28 MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITP 107 (443)
Q Consensus 28 ~~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp 107 (443)
+.|.||++..||+.+.||+|.+.||+.+.+.|+-+.+++++.+||+|.+++++|++++..++.+++++++|.+||++.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEe
Q 040623 108 DEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~ 187 (443)
...++.+|++++.|+|||.++|..|+..+++.||.|+||||++|||..|++++||+.+|.|+..|+|+-+++.++..|.+
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCc
Q 040623 188 DGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267 (443)
Q Consensus 188 ~~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~ 267 (443)
.+|.....+.+.++++ ++++..+.+|...++-+|+.+|+||.++++++++.+|-+|||.+||-|.++|+|+|.++|+.+
T Consensus 170 ~dg~~~~~~~V~~f~~-~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~k 248 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKG-SGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSK 248 (422)
T ss_pred CCCCcceeEEEEecCC-CceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHH
Confidence 7776555666677777 778877999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh
Q 040623 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 268 f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~ 347 (443)
|++.+|+|||++||+|.+|++++-++|||.|.|+.||+-||+.|+-.|||||+.|..+.|||++-.-|++|||..++|+.
T Consensus 249 fe~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 249 FEALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HHhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877889999999999999
Q ss_pred hcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFID 427 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 427 (443)
|+.|+..|.||+|.|+||.--|.|.|.++.|++|..+++.||+|+..++++|..|+||..+++| -+.+...++|.||.|
T Consensus 329 hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFid 407 (422)
T KOG1526|consen 329 HQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFID 407 (422)
T ss_pred HhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988877 455667899999999
Q ss_pred HHHHHHHHHhhhh
Q 040623 428 AVTETLKERMSIK 440 (443)
Q Consensus 428 aV~~~l~~~~~~~ 440 (443)
+|..+|+..+.+.
T Consensus 408 av~~~L~~~~~~~ 420 (422)
T KOG1526|consen 408 AVASNLKKKLAQA 420 (422)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877654
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.18 E-value=0.015 Score=62.99 Aligned_cols=182 Identities=18% Similarity=0.229 Sum_probs=112.6
Q ss_pred cceEEEEeecHHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeeehhHH
Q 040623 205 GGVALSMYNTDESICSFAEASMNTAYQKKWP-LYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDM 283 (443)
Q Consensus 205 ~~va~~~~~T~~~~eRiar~AFe~A~~r~~k-Vt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~VDa~ 283 (443)
.++|..+..-..-++-+++.|.++||..+.+ |--.++.-. -| ++....| +.|=.+++..|+++.-+-...+
T Consensus 449 GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HD---a~lI~kV--~~yL~~hdt~gldi~Im~P~~A 520 (735)
T PF03971_consen 449 GDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HD---AELIKKV--EKYLKDHDTSGLDIRIMSPVEA 520 (735)
T ss_dssp T-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HH---HHHHHHH--HHHHTTS--TT--EEEE-HHHH
T ss_pred CcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 4677655556778999999999999998875 333343211 22 3444555 3444455566888887765554
Q ss_pred HHH---HhhCCCceEEEecCCcccchhhhhhhh--cCC---cccccceeeCCCCceEEEec-ccccccccchhhcCCCCc
Q 040623 284 VAY---ALKSEGGYVWACKNYDGDVQSDFLAQG--FGS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGET 354 (443)
Q Consensus 284 ~~~---Lv~~P~~FViv~~NlfGDIlSDlaA~l--~Gg---lGlapSanig~~~~~a~FEp-~HGSApdi~~~~iAGk~i 354 (443)
+.. -++.-..-+-||.|..=|+|+||.--| .-| |-+.|=.| .| ++||. .-||||.++.+-+.---+
T Consensus 521 ~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhL 595 (735)
T PF03971_consen 521 TRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---GG--GLFETGAGGSAPKHVQQFVEENHL 595 (735)
T ss_dssp HHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHHHCCCS--
T ss_pred HHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceeccCCCCCccHHHHHHHHcCcc
Confidence 432 333444448899999999999998654 223 22233322 33 79999 568999997665543333
Q ss_pred ccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC
Q 040623 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG 399 (443)
Q Consensus 355 ~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G 399 (443)
-=+.+|-+||.+--|+|++...+|++..-.|+.|.+|+.+.|+++
T Consensus 596 RWDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ 640 (735)
T PF03971_consen 596 RWDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENN 640 (735)
T ss_dssp ---THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 378899999999999999999889988889999999999999876
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.35 E-value=0.058 Score=58.79 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=122.7
Q ss_pred cceEEEEeecHHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeeehhHH
Q 040623 205 GGVALSMYNTDESICSFAEASMNTAYQKKWP-LYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDM 283 (443)
Q Consensus 205 ~~va~~~~~T~~~~eRiar~AFe~A~~r~~k-Vt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~VDa~ 283 (443)
.++|..+..-..-++-+++.|.++||..+-+ |--.++.-. -| ++....| +.|=.+.+..|++++-+-...+
T Consensus 453 GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV--~~yL~~hdt~gldi~Im~p~~A 524 (741)
T TIGR00178 453 GDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKV--ETYLKDHDTEGLDIQILSPVEA 524 (741)
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 3455333334566889999999999999875 333333211 12 2333444 2333334455788877755444
Q ss_pred HH---HHhhCCCceEEEecCCcccchhhhhhhhc--CC---cccccceeeCCCCceEEEec-ccccccccchhhcCCCCc
Q 040623 284 VA---YALKSEGGYVWACKNYDGDVQSDFLAQGF--GS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGET 354 (443)
Q Consensus 284 ~~---~Lv~~P~~FViv~~NlfGDIlSDlaA~l~--Gg---lGlapSanig~~~~~a~FEp-~HGSApdi~~~~iAGk~i 354 (443)
+. .-+++-..-+-||.|..=|+|+||.--|= -| |-+.|=.| .| ++||. .-||||.++.+-+.---+
T Consensus 525 ~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhL 599 (741)
T TIGR00178 525 TRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GLFETGAGGSAPKHVQQFLEENHL 599 (741)
T ss_pred HHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceecCCCCCCccHHHHHHHHcCcc
Confidence 32 33444444588999999999999986552 12 22333333 23 79999 568999997665433333
Q ss_pred ccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC
Q 040623 355 STNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG 399 (443)
Q Consensus 355 ~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G 399 (443)
-=+.+|-+||.+--|+|++...+|++..-.|+.|.+|..+.|+++
T Consensus 600 RWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ 644 (741)
T TIGR00178 600 RWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNN 644 (741)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 378899999999999999998888888888999999999999876
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=94.44 E-value=0.74 Score=49.53 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=116.3
Q ss_pred ceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeee-hhHHH
Q 040623 206 GVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRL-IDDMV 284 (443)
Q Consensus 206 ~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~-VDa~~ 284 (443)
++|..+......++-+++.|.++||..+-++..---.+ +..|. +....| +.|=..-+..|+.+.-+- +.++-
T Consensus 456 DiwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd~---~li~kV--~~yLkdhdt~GldI~Ilsp~ea~~ 528 (744)
T COG2838 456 DIWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHDK---ELIKKV--EAYLKDHDTNGLDIQILSPVEAMR 528 (744)
T ss_pred cHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccchH---HHHHHH--HHHhhhcCCCCcceEEecHHHHHH
Confidence 45544556677889999999999999877543322111 12232 233333 222222223466665553 34442
Q ss_pred --HHHhhCCCceEEEecCCcccchhhhhhhhcCC-----cccccceeeCCCCceEEEec-ccccccccchhhcCCCCccc
Q 040623 285 --AYALKSEGGYVWACKNYDGDVQSDFLAQGFGS-----LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETST 356 (443)
Q Consensus 285 --~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~Gg-----lGlapSanig~~~~~a~FEp-~HGSApdi~~~~iAGk~i~A 356 (443)
+..+++-+.-+-||.|..-|+|+||.--|-=| |.+.|=.| .| +|||. ..||||.++.+-..---+-=
T Consensus 529 ~sl~rl~~G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlma---GG--gmfETGAGGSAPKhVqQ~~eENhLRW 603 (744)
T COG2838 529 YSLERLRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GMFETGAGGSAPKHVQQLVEENHLRW 603 (744)
T ss_pred HHHHHHHcCCceeEecchHHHHHHhhhhhHhhcccccchheeeeecc---CC--ceeecCCCCCCcHHHHHHHHhcccch
Confidence 22344445558899999999999998655311 22223222 23 79999 46899998644332222225
Q ss_pred ChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC
Q 040623 357 NSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG 399 (443)
Q Consensus 357 NP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G 399 (443)
+.+|-+|+.+--|||+|...+|.+..-.|+.|..|..+.+...
T Consensus 604 DSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~ 646 (744)
T COG2838 604 DSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNN 646 (744)
T ss_pred hhHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999988888877778888999988888754
No 35
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=90.86 E-value=0.16 Score=51.57 Aligned_cols=134 Identities=19% Similarity=0.061 Sum_probs=72.4
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchHHH--------HHHHHHHHhhccCccccCCeEEe-ee
Q 040623 211 MYNTDESICSFAEASMNTAYQ-KK--WPLYLSTKNTILKNYDGRFK--------DIFQEVYEAQWKSKFEAAGIWYE-HR 278 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~-r~--~kVt~v~KaNvl~~tdglf~--------~~~~ev~a~eyp~~f~~~~I~~~-~~ 278 (443)
..+|.+.+.+.++...+.-++ -+ ++-..|-==|==..-.|+|= -..++. . -. +|.+. ..
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~-~--~~------gi~v~GP~ 220 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEA-R--AE------GIDVFGPY 220 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHH-H--HT------THEEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHH-H--hC------CCceECCC
Confidence 677888888888877766655 22 22122222232221234443 222222 1 12 66665 45
Q ss_pred ehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccC
Q 040623 279 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 357 (443)
Q Consensus 279 ~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~AN 357 (443)
=-|++-.+-.+ ++| ++|+ || -|++-.=.=-+++--+.|+--.--.----|.||||-|| ||||+ ||
T Consensus 221 paDt~F~~~~~--~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfDI-----AGkg~-A~ 286 (298)
T PF04166_consen 221 PADTVFGKANR--GKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFDI-----AGKGI-AD 286 (298)
T ss_dssp -HHHHTSHHHH--TT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CCG-----TTTTT-S-
T ss_pred ccHHhhhcchh--ccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecCCCCchhhh-----hCCCC-CC
Confidence 55666444433 567 5554 34 67776666667777777754221012235889999998 99999 99
Q ss_pred hhhHHHHHHH
Q 040623 358 SIASIFAWSQ 367 (443)
Q Consensus 358 P~A~IlS~am 367 (443)
|.+|+-|.-+
T Consensus 287 ~~s~~~Ai~~ 296 (298)
T PF04166_consen 287 PSSMIEAIKL 296 (298)
T ss_dssp THHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999988765
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=89.22 E-value=0.26 Score=50.78 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=80.2
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC---CEEEEeCCccccccchHH-HHHHHHHHHhhccC--ccccCCeEEe-eeehhHH
Q 040623 211 MYNTDESICSFAEASMNTAYQKKW---PLYLSTKNTILKNYDGRF-KDIFQEVYEAQWKS--KFEAAGIWYE-HRLIDDM 283 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~---kVt~v~KaNvl~~tdglf-~~~~~ev~a~eyp~--~f~~~~I~~~-~~~VDa~ 283 (443)
+.+|.+.+.+.++.+.+.-++.+. |+-+ -==|==..-.|+| +|..+-+ . |. +..+.+++++ ..=-|++
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV-~gLNPHAGE~G~~G~EE~~iI-~---PAI~~~~~~G~~v~GP~paDt~ 251 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAV-CGLNPHAGEGGHFGREEIDII-I---PALEELRAEGINLVGPLPADTL 251 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEE-EeeCCCCCCCCCCCHHHHHHH-H---HHHHHHHhCCCCcCCCCCchhh
Confidence 678888888888888776653331 3322 1122222223555 3222221 1 10 0001133332 3344555
Q ss_pred HHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccChhhH
Q 040623 284 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIAS 361 (443)
Q Consensus 284 ~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP~A~ 361 (443)
-.+-.+ ++| ++|+ || -|++--=+=-+++-.+.|+--.- +. ---|-||||-|| |||++ |||.+|
T Consensus 252 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-PiiRTS~DHGTAfDI-----AGkg~-A~~~S~ 316 (332)
T PRK00232 252 FQPAYL--GDADAVLA--MY----HDQGLPVLKYLGFGRGVNITLGL-PFIRTSVDHGTALDL-----AGKGI-ADVGSF 316 (332)
T ss_pred cccccc--CCCCEEEE--Cc----ccccchhheecccCcceEEecCC-CeeEeCCCCcchhhh-----hcCCC-CCHHHH
Confidence 333333 456 5554 33 57776667777777888865321 22 235789999998 99999 999999
Q ss_pred HHHHHHHHHh
Q 040623 362 IFAWSQGLAH 371 (443)
Q Consensus 362 IlS~ammL~~ 371 (443)
+-|.-+..+.
T Consensus 317 ~~Ai~lA~~~ 326 (332)
T PRK00232 317 ITALNLAIRM 326 (332)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 37
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=89.11 E-value=0.27 Score=50.55 Aligned_cols=139 Identities=13% Similarity=0.040 Sum_probs=79.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhCC--C-CEEEEeCCccccccchHH-HHHHHHHHH---hhccCccccCCeEEe-eeehhH
Q 040623 211 MYNTDESICSFAEASMNTAYQKK--W-PLYLSTKNTILKNYDGRF-KDIFQEVYE---AQWKSKFEAAGIWYE-HRLIDD 282 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~--~-kVt~v~KaNvl~~tdglf-~~~~~ev~a---~eyp~~f~~~~I~~~-~~~VDa 282 (443)
..+|.+.+.+.++.+.+.-++-+ + |+-+. ==|=-..-.|+| +|..+.+ . ++.. +.+++++ ..=-|+
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~-gLNPHAGE~G~~G~EE~~iI-~PAi~~~~----~~G~~v~GP~paDt 249 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVA-GVNPHAGENGLFGDEEIRIV-TPAIEAMR----AKGMDVYGPCPPDT 249 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHH-HHHHHHHH----HCCCcccCCCCchh
Confidence 67788888888877776555322 2 33211 122222224666 4433332 1 1111 1133333 344455
Q ss_pred HHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccChhh
Q 040623 283 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIA 360 (443)
Q Consensus 283 ~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP~A 360 (443)
+-.+-.+ ++| ++|+ || -|++--=.=.+++--+.|+--.- +- ---|-||||-|| |||++ |||.+
T Consensus 250 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-P~iRTS~DHGTAfDI-----AGkG~-A~~~S 314 (326)
T PRK03371 250 VFLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGL-PFIRTSADHGTAFDI-----AWTGK-AKSES 314 (326)
T ss_pred hcccccc--cCCCEEEE--cc----ccccchhheecccccceEEecCC-CeeEecCCCCchhhh-----hcCCc-CCHHH
Confidence 5333333 457 5554 33 57777777778888888865321 21 234789999998 99999 99999
Q ss_pred HHHHHHHHHH
Q 040623 361 SIFAWSQGLA 370 (443)
Q Consensus 361 ~IlS~ammL~ 370 (443)
|+-|.-+..+
T Consensus 315 ~~~Ai~lA~~ 324 (326)
T PRK03371 315 MAVSIKLAMQ 324 (326)
T ss_pred HHHHHHHHHH
Confidence 9988876544
No 38
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=88.87 E-value=0.29 Score=50.50 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=82.6
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC---CEEEEeCCccccccchHH-HHHHHHHHHhhccC--ccccCCeEEe-eeehhHH
Q 040623 211 MYNTDESICSFAEASMNTAYQKKW---PLYLSTKNTILKNYDGRF-KDIFQEVYEAQWKS--KFEAAGIWYE-HRLIDDM 283 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~---kVt~v~KaNvl~~tdglf-~~~~~ev~a~eyp~--~f~~~~I~~~-~~~VDa~ 283 (443)
+.+|.+.+.+.++.+.+.-++-+. |+-+. ==|==..-.|+| +|..+-+ . |. +..+.+++++ .+=.|++
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI-~---PAI~~~~~~g~~v~GP~paDt~ 251 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVA-GLNPHSGEHGLFGDEEVDEI-I---PAVEAAQEMGINVEGPVPADSV 251 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHH-H---HHHHHHHHCCCcccCCCCchhh
Confidence 678899999888888886664332 33221 122222223555 3322221 1 10 0001133333 4445555
Q ss_pred HHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccChhhH
Q 040623 284 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIAS 361 (443)
Q Consensus 284 ~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP~A~ 361 (443)
-.+-.+ ++| ++|| || -|++--=.=-+++-.+.|+--.- +. ---|-||||-|| |||++ |||.+|
T Consensus 252 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-P~iRTS~DHGTAfDI-----AGkg~-A~~~S~ 316 (332)
T PRK03743 252 FHLALQ--GRYDAVLS--LY----HDQGHIATKTLDFERTIAITNGL-PFLRTSVDHGTAFDI-----AGTGK-ASSVSM 316 (332)
T ss_pred cccccc--cCCCEEEE--cc----cccCChhheecccCCceEEecCC-CeeEeCCCCcchhhh-----hcCCC-CCHHHH
Confidence 443333 457 5554 33 57777777778888888865321 21 235789999998 99999 999999
Q ss_pred HHHHHHHHHh
Q 040623 362 IFAWSQGLAH 371 (443)
Q Consensus 362 IlS~ammL~~ 371 (443)
+-|.-+..+.
T Consensus 317 ~~Ai~lA~~~ 326 (332)
T PRK03743 317 EEAILLAAKY 326 (332)
T ss_pred HHHHHHHHHH
Confidence 9998877665
No 39
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=88.41 E-value=0.34 Score=49.50 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=77.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHH-HH------HHHHHHHhhccCccccCCeEEe--eeehh
Q 040623 211 MYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRF-KD------IFQEVYEAQWKSKFEAAGIWYE--HRLID 281 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf-~~------~~~ev~a~eyp~~f~~~~I~~~--~~~VD 281 (443)
+.+|.+.+.+-++.+.+.-+ . .|+-+. ==|=-..-.|+| +| ..++. .+. .+++++ ..=.|
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~-PrIaV~-gLNPHAGE~G~~G~EE~iI~PAi~~~-~~~-------~g~~~~~GP~paD 225 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-F-KKIGVL-GLNPHAGDNGVIGGEEEEIKKAIKKA-NQF-------LGFEIFFGPLVPD 225 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-C-CCEEEE-eeCCCCCCCCCCCcchHHHHHHHHHH-HHh-------cCCCcccCCcCch
Confidence 66788888877777665433 2 232211 012111123444 22 22222 101 144444 55566
Q ss_pred HHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCC-cccCh
Q 040623 282 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGE-TSTNS 358 (443)
Q Consensus 282 a~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~-i~ANP 358 (443)
++-.+-.+ ++| ++|+ || -|++--=+=.+++--+.|+--.- +. ---|-||||-|| |||+ + |||
T Consensus 226 t~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVnvTlGL-P~iRTSpDHGTAfDI-----AGkg~~-A~~ 290 (307)
T PRK03946 226 SAFTPNKR--KKFNYYVA--MY----HDQGLAPLKALYFDESINVSLNL-PILRTSVDHGTAFDI-----AYKNAK-ANT 290 (307)
T ss_pred hhcccccc--cCCCEEEE--Cc----cccCchhheeeccCcceEEecCC-CEeEecCCCCchhhh-----cCCCCc-CCH
Confidence 66444333 567 5555 33 57776667777777888865221 21 225789999998 9999 9 999
Q ss_pred hhHHHHHHHHHHh
Q 040623 359 IASIFAWSQGLAH 371 (443)
Q Consensus 359 ~A~IlS~ammL~~ 371 (443)
.+|+-|.-+..+.
T Consensus 291 ~S~~~Ai~lA~~~ 303 (307)
T PRK03946 291 KSYLNAIKYAINL 303 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776654
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=88.22 E-value=0.34 Score=49.93 Aligned_cols=141 Identities=12% Similarity=0.003 Sum_probs=83.3
Q ss_pred EeecHHHHHHHHHHHHHHHHhC-C--C-CEEEEeCCccccccchHH-HHHHHHHHHhhccC--ccccCCeEEe-eeehhH
Q 040623 211 MYNTDESICSFAEASMNTAYQK-K--W-PLYLSTKNTILKNYDGRF-KDIFQEVYEAQWKS--KFEAAGIWYE-HRLIDD 282 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r-~--~-kVt~v~KaNvl~~tdglf-~~~~~ev~a~eyp~--~f~~~~I~~~-~~~VDa 282 (443)
+.+|.+.+.+.++.+.+.-++. + + |+-+. ==|=-..-.|+| +|..+-+ . |. +..+.++.++ ..=-|+
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI-~---PAi~~~~~~Gi~v~GP~paDt 246 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVT-GLNPHAGENGYLGREEIDVI-E---PALARARAAGIDARGPYPADT 246 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHH-H---HHHHHHHHCCCCccCCCCchh
Confidence 6788999999999888866632 2 2 43221 112222224666 4333222 1 10 0001133332 444555
Q ss_pred HHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccChhh
Q 040623 283 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIA 360 (443)
Q Consensus 283 ~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP~A 360 (443)
+-.+..+ ++| ++|+ || -|++---.=-+++-.+.|+--.- +. ---|-||||-|| |||++ |||.+
T Consensus 247 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-P~iRTSvDHGTAfDI-----AGkg~-A~~~S 311 (329)
T PRK01909 247 LFQPRYL--EDADCVLA--MF----HDQGLPVLKYATFGEGINVTLGL-PIIRTSVDHGTALDL-----AGTGR-ADPGS 311 (329)
T ss_pred hcccccc--cCCCEEEE--cc----ccccchhheecccCcceEEecCC-CeeEeCCCCcchhhh-----hcCCC-CCHHH
Confidence 5444433 457 5554 33 57777777778888888865321 21 234789999998 99999 99999
Q ss_pred HHHHHHHHHHh
Q 040623 361 SIFAWSQGLAH 371 (443)
Q Consensus 361 ~IlS~ammL~~ 371 (443)
|+-|.-+..+.
T Consensus 312 ~~~Ai~lA~~~ 322 (329)
T PRK01909 312 MIAAIDTAVTM 322 (329)
T ss_pred HHHHHHHHHHH
Confidence 99988876654
No 41
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=88.04 E-value=0.35 Score=49.95 Aligned_cols=141 Identities=17% Similarity=0.084 Sum_probs=80.4
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CCC---CEEEEeCCccccccchHH-HHHHHHHHHhhccC--ccccCCeEEe-eeehhH
Q 040623 211 MYNTDESICSFAEASMNTAYQ-KKW---PLYLSTKNTILKNYDGRF-KDIFQEVYEAQWKS--KFEAAGIWYE-HRLIDD 282 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~-r~~---kVt~v~KaNvl~~tdglf-~~~~~ev~a~eyp~--~f~~~~I~~~-~~~VDa 282 (443)
+.+|.+.+.+.++.+.+.-++ -+. |+-+. ==|=-..-.|+| +|..+-+ . |. +..+.++.++ ..=.|+
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI-~---PAI~~~~~~Gi~v~GP~paDt 255 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVA-GLNPHAGEGGALGREDIDII-A---PAIEQLRAEGIDARGPLPADT 255 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHH-H---HHHHHHHHCCCCccCCCCchh
Confidence 678899999888888886663 221 43221 112222223556 3332222 1 10 0001133222 334455
Q ss_pred HHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccChhh
Q 040623 283 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNSIA 360 (443)
Q Consensus 283 ~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP~A 360 (443)
+-.+-.+ ++| ++|+ || -|++-.-.=.+++-.+.|+--.- +. ---|-||||-|| |||++ |||.+
T Consensus 256 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-P~iRTSvDHGTAfDI-----AGkg~-A~~~S 320 (336)
T PRK05312 256 MFHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVTLGL-PFIRTSPDHGTAFDI-----AGKGI-ARPDS 320 (336)
T ss_pred hcccccc--cCCCEEEE--cc----cccCChhheecccCcceEEecCC-CeeEeCCCCcchhhh-----hcCCC-CCHHH
Confidence 4333222 456 4444 33 57776667777887888865321 22 224789999998 99999 99999
Q ss_pred HHHHHHHHHHh
Q 040623 361 SIFAWSQGLAH 371 (443)
Q Consensus 361 ~IlS~ammL~~ 371 (443)
|+-|.-+..+.
T Consensus 321 ~~~Ai~lA~~~ 331 (336)
T PRK05312 321 LIAALRLAAQM 331 (336)
T ss_pred HHHHHHHHHHH
Confidence 99998877664
No 42
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=87.97 E-value=0.36 Score=50.03 Aligned_cols=140 Identities=10% Similarity=-0.060 Sum_probs=82.9
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--C-CEEEEeCCccccccchHH-HH-------HHHHHHHhhccCccccCCeEEe-e
Q 040623 211 MYNTDESICSFAEASMNTAYQ-KK--W-PLYLSTKNTILKNYDGRF-KD-------IFQEVYEAQWKSKFEAAGIWYE-H 277 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~-r~--~-kVt~v~KaNvl~~tdglf-~~-------~~~ev~a~eyp~~f~~~~I~~~-~ 277 (443)
+.+|.+.+.+-++.+.+.-++ -+ + |+-+. ==|==..-.|+| +| ..++. .++.+ ++++. .
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI~PAIe~~-r~~g~------g~~v~GP 250 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIA-GLNPHAGEQGQLGTEEKDWLIPWLESW-RQKNP------DIQLLGP 250 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEE-eeCCCCCCCCCCcHHHHHHHHHHHHHH-HhcCC------CceeeCC
Confidence 667888888877777665553 22 2 43221 122222223555 22 22332 22222 34443 4
Q ss_pred eehhHHHHHHhhC------CCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhc
Q 040623 278 RLIDDMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 278 ~~VDa~~~~Lv~~------P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~i 349 (443)
.=-|++-.+..+. .++| ++|| || -|++-.=+=-+++-.+.|+--.- +. ---|-||||-||
T Consensus 251 ~paDt~F~~~~~~~~~~~~~~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-P~iRTS~DHGTAfDI----- 318 (345)
T PRK02746 251 IPPDTCWVSPAQAWYGKGVAEAPDGYLA--LY----HDQGLIPVKLMAFDRAVNTTIGL-PFIRTSPDHGTAFDI----- 318 (345)
T ss_pred CCchhhccccccccccccccCCCCEEEE--Cc----ccCCChhheeeccCcceEEecCC-CeeEeCCCCcchhhh-----
Confidence 4556665554442 2457 5555 33 57777777778888888865321 22 225789999998
Q ss_pred CCCCcccChhhHHHHHHHHHHh
Q 040623 350 KGGETSTNSIASIFAWSQGLAH 371 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~ 371 (443)
|||++ |||.+|+-|.-+..+.
T Consensus 319 AGkg~-A~~~S~~~Ai~lA~~l 339 (345)
T PRK02746 319 AGKGI-ARPQSMKAAIKLAWEL 339 (345)
T ss_pred hcCCC-CCHHHHHHHHHHHHHH
Confidence 99999 9999999988876654
No 43
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=87.81 E-value=0.37 Score=49.52 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=78.8
Q ss_pred EeecHHHHHHHHHHHHHHHHhC-C--C-CEE-EEeCCccccccchHH-HHHHHHHHH---hhccCccccCCeEEe-eeeh
Q 040623 211 MYNTDESICSFAEASMNTAYQK-K--W-PLY-LSTKNTILKNYDGRF-KDIFQEVYE---AQWKSKFEAAGIWYE-HRLI 280 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r-~--~-kVt-~v~KaNvl~~tdglf-~~~~~ev~a---~eyp~~f~~~~I~~~-~~~V 280 (443)
+.+|.+.+.+-++.+.+.-++. + + |+- +.-..+. .-.|+| +|..+-+ . ++.. +.++.++ ..=.
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHA--GE~G~~G~EE~~iI-~PAI~~~~----~~G~~v~GP~pa 241 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHA--GEGGHLGREEIDII-IPALEALR----AEGIDLIGPLPA 241 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCC--CCCCCCcHHHHHHH-HHHHHHHH----HCCCcccCCCCc
Confidence 5688898988888888776632 2 2 432 2222222 123555 3322211 1 0000 1133332 3344
Q ss_pred hHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE-EEecccccccccchhhcCCCCcccCh
Q 040623 281 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI-EAEAAHGTVTRHYRVHQKGGETSTNS 358 (443)
Q Consensus 281 Da~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a-~FEp~HGSApdi~~~~iAGk~i~ANP 358 (443)
|++-.+-.+ ++| ++|+ || -|++-.=.=.+++--+.|+--.- +- ---|-||||-|| |||++ |||
T Consensus 242 Dt~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGL-PiiRTS~DHGTAfDI-----AGkg~-A~~ 306 (320)
T TIGR00557 242 DTLFHPAAL--AKYDAVLA--MY----HDQGLIPLKYLGFDEGVNVTLGL-PFIRTSPDHGTAFDI-----AGKGK-ADP 306 (320)
T ss_pred hhhcccccc--cCCCEEEE--Cc----ccccchhheecccCcceEEecCC-CeeEeCCCCcchhhh-----hcCCC-CCH
Confidence 554333222 456 5554 33 57777667778888888865321 22 224789999998 99999 999
Q ss_pred hhHHHHHHHHHH
Q 040623 359 IASIFAWSQGLA 370 (443)
Q Consensus 359 ~A~IlS~ammL~ 370 (443)
.+|+-|.-+..+
T Consensus 307 ~S~~~Ai~~A~~ 318 (320)
T TIGR00557 307 GSLIAAIKLAIE 318 (320)
T ss_pred HHHHHHHHHHHH
Confidence 999888776544
No 44
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=87.65 E-value=0.37 Score=49.40 Aligned_cols=58 Identities=21% Similarity=0.078 Sum_probs=42.3
Q ss_pred hhhhhhhcCCcccccceeeCCCCce-EEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHh
Q 040623 307 SDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAH 371 (443)
Q Consensus 307 SDlaA~l~GglGlapSanig~~~~~-a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~ 371 (443)
-|++---.-=+|+--|.|+.-.- + ----|-||||-|| ||||+ |||.+++-|..+.-+.
T Consensus 267 HDQgliplK~l~Fd~~VNvtlGL-PfiRTS~DHGTAfDi-----AgkGi-A~~~S~~~Ai~lA~~l 325 (332)
T COG1995 267 HDQGLIPLKYLGFDRGVNVTLGL-PFIRTSVDHGTAFDI-----AGKGI-ADPGSLIAAIKLAAKL 325 (332)
T ss_pred ccccchhhhhhccccceEEecCC-CeeeecCCccchhhh-----hcCCc-CCchHHHHHHHHHHHH
Confidence 46665556667777788876432 2 1235789999998 99999 9999998887765554
No 45
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=49.62 E-value=8.4 Score=40.51 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=23.3
Q ss_pred cccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEe
Q 040623 148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 148 ~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~ 187 (443)
+.+||+++|+. | ...+|+||.|||| |.+|.+
T Consensus 122 ~y~~gvPspvk--~------pe~~dmVIfRent-eDiYag 152 (407)
T COG0538 122 RYFPGVPSPVK--R------PEKVDMVIFRENT-EDIYAG 152 (407)
T ss_pred EecCCCCCCCC--C------cccCCeEEEeccc-cchhhe
Confidence 34567777752 1 2579999999999 999985
No 46
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=42.33 E-value=14 Score=39.43 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=12.4
Q ss_pred CceeeeecccCCCCC
Q 040623 155 KPICIGRHAFGDQYR 169 (443)
Q Consensus 155 ~pl~~~R~~~~d~~~ 169 (443)
-.+++.||||++.|.
T Consensus 154 id~vivRENTEg~ye 168 (410)
T PLN00103 154 LKLVFVPEGKDEKTE 168 (410)
T ss_pred eEEEEEecCCCceeE
Confidence 347899999999983
No 47
>PRK12861 malic enzyme; Reviewed
Probab=36.44 E-value=1.6e+02 Score=34.04 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CEEEEeCCcc---ccccchHHHHHHHHHHHhhccCccccCCeEEe-eeehhHHHHHHh
Q 040623 215 DESICSFAEASMNTAYQKKW--PLYLSTKNTI---LKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYE-HRLIDDMVAYAL 288 (443)
Q Consensus 215 ~~~~eRiar~AFe~A~~r~~--kVt~v~KaNv---l~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~-~~~VDa~~~~Lv 288 (443)
-+.-..|+..|.++|+.-+- ||-+..=+|. -.......++..+-+ .+++| ++.++ ++..|++.-.-+
T Consensus 612 aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~-~~~~p------d~~vdGemq~DaAl~~e~ 684 (764)
T PRK12861 612 AEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIV-REQAP------DLEADGEMHGDCALDEGL 684 (764)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHH-HhhCC------CcEEEecCcHHHhCCHHH
Confidence 44455577888888887654 6666553333 222334577777654 66789 77776 667786643322
Q ss_pred ---hCCCc-e-----EEEecCC-cccchhhhhhhhcCC
Q 040623 289 ---KSEGG-Y-----VWACKNY-DGDVQSDFLAQGFGS 316 (443)
Q Consensus 289 ---~~P~~-F-----Viv~~Nl-fGDIlSDlaA~l~Gg 316 (443)
+-|.. + |+|+||+ =|||+-.+.-.+.|+
T Consensus 685 a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 685 RARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred HHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 22322 2 9999999 899999988877654
No 48
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=35.17 E-value=83 Score=25.32 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhcc
Q 040623 218 ICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWK 265 (443)
Q Consensus 218 ~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp 265 (443)
...+++.|+++|++++.||.. ++..-...+++ ..+|.
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~--hpey~ 76 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVP---------TCSYVAKYFRR--HPEYQ 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGGT
T ss_pred HHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHh--Ccccc
Confidence 678999999999999988754 56666666665 34565
No 49
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=34.42 E-value=1.5e+02 Score=34.29 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CEEEE---eCCccccccchHHHHHHHHHHHhhccCccccCCeEEe-eeehhHHHHHH
Q 040623 214 TDESICSFAEASMNTAYQKKW--PLYLS---TKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYE-HRLIDDMVAYA 287 (443)
Q Consensus 214 T~~~~eRiar~AFe~A~~r~~--kVt~v---~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~-~~~VDa~~~~L 287 (443)
|-+.--.|+..|-++|+.-+. ||-+. ++-|--....-.-++..+-+ ++.+| ++.++ ++..|++.-.-
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~ll-k~~~~------~l~~dGemq~D~Al~~~ 674 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELL-RERAP------DLEVDGEMHGDAALNEE 674 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHH-HhhCC------CcEEEEechHHHhCCHH
Confidence 345556688888899987654 77777 55443222333455666554 56678 77777 56778774322
Q ss_pred h---hCCCc-e-----EEEecCCc-ccchhhhhhhhcCCc
Q 040623 288 L---KSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGSL 317 (443)
Q Consensus 288 v---~~P~~-F-----Viv~~Nlf-GDIlSDlaA~l~Ggl 317 (443)
+ +-|.. . |+|.||+. |||+--+.--+.|+.
T Consensus 675 va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 675 IRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 2 23322 2 99999996 999998887776653
No 50
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=32.32 E-value=1.3e+02 Score=33.86 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=62.5
Q ss_pred cCCCCCC-ccEEEecCCceeEEEEeCCCCCcceeeeeeec-CCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 040623 164 FGDQYRA-TDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFT-GAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTK 241 (443)
Q Consensus 164 ~~d~~~~-id~vivrent~e~~y~~~~g~~~~~~~~~~~~-~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~K 241 (443)
-+|-|.+ .-+++-...++...|++.+|... .. ....+ ...++.++.+++.+.-+.+.+...+-|++.+--..+=-|
T Consensus 174 ~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~~-vL-K~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vLfSlHlK 251 (735)
T PF03971_consen 174 GGDFYGNEKSVTVDKATTVRIEFVGKDGSVT-VL-KEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVLFSLHLK 251 (735)
T ss_dssp SSSHHHH-EEEE-SSSEEEEEEEEETTS-EE-EE-EEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE-B-
T ss_pred CCCCCCCceEEEecCCCeEEEEEEcCCCCEE-ec-cCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCeEEeeeh
Confidence 3444432 23333344455667777655321 11 11111 124677889999999999999999999988755555559
Q ss_pred CccccccchH-HHHH----HHHHHHhhccCccccCCeEEe
Q 040623 242 NTILKNYDGR-FKDI----FQEVYEAQWKSKFEAAGIWYE 276 (443)
Q Consensus 242 aNvl~~tdgl-f~~~----~~ev~a~eyp~~f~~~~I~~~ 276 (443)
++-||.+|-. |-.. |++|| +.|.+.|.+.||..+
T Consensus 252 ATMMKVSDPIiFGhaV~v~f~~vF-~k~~~~~~~~Gvn~n 290 (735)
T PF03971_consen 252 ATMMKVSDPIIFGHAVKVFFKDVF-EKHGDTFKELGVNPN 290 (735)
T ss_dssp TTTSTTHHHHHHHHHHHHHCHHHH-HHCHHHHHHCT-SCC
T ss_pred hhhhhccCccHHHHHHHHHHHHHH-HHHHHHHHHcCCCcc
Confidence 9999999853 3222 24454 456677777777444
No 51
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=26.88 E-value=2.4e+02 Score=28.85 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhCC-C--CEEEE---eCCccccccchHHHHHHHHHHHhhccCccccCCeEEe-eeehhHHHHHH
Q 040623 215 DESICSFAEASMNTAYQKK-W--PLYLS---TKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYE-HRLIDDMVAYA 287 (443)
Q Consensus 215 ~~~~eRiar~AFe~A~~r~-~--kVt~v---~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~-~~~VDa~~~~L 287 (443)
.+.--.|+..|-++|+.-+ . ||-+. +|.|--..+.-..++.+.-+ .+++| ++.++ ++-+|++.-.=
T Consensus 158 ~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~-~~~~~------~~~vdG~l~~D~Al~~~ 230 (303)
T TIGR00651 158 AEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIA-KEKRP------DLTIDGELQFDAAFVEK 230 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHH-hccCC------CeEEEecCchhhhCCHH
Confidence 4445567888899998765 2 55544 33332222233556666554 56788 77776 55667774221
Q ss_pred ---hhCCCc-e-----EEEecCCc-ccchhhhhhhhcCC
Q 040623 288 ---LKSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGS 316 (443)
Q Consensus 288 ---v~~P~~-F-----Viv~~Nlf-GDIlSDlaA~l~Gg 316 (443)
.+-|.. + |+|+||++ |||+--+.-.+.|+
T Consensus 231 ~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 231 VAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 223432 2 99999998 78877776666544
No 52
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=26.52 E-value=36 Score=32.86 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.9
Q ss_pred cccccceeeCCCCceEEEeccccccccc
Q 040623 317 LGLMTSVLVCPDGKTIEAEAAHGTVTRH 344 (443)
Q Consensus 317 lGlapSanig~~~~~a~FEp~HGSApdi 344 (443)
||..|-+|-|+.+ ..|-|.|||--|+
T Consensus 156 LGCVp~~~AGd~g--g~~CPCHGSHYda 181 (210)
T KOG1671|consen 156 LGCVPIANAGDYG--GYYCPCHGSHYDA 181 (210)
T ss_pred ccccccccccccC--ceecccccccccc
Confidence 6888999999887 7899999998886
No 53
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=34 Score=36.13 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeeehhHHHHHHhhCCCce----
Q 040623 219 CSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY---- 294 (443)
Q Consensus 219 eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~F---- 294 (443)
-|++|..|++|+++.--+.. -+....++++.|- .=.--+.=|-...|+|+..=.+|
T Consensus 230 aRlVRelF~lArekaPsIIF--------------iDEIDAIg~kR~d------~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 230 ARLVRELFELAREKAPSIIF--------------IDEIDAIGAKRFD------SGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEE--------------Eechhhhhccccc------CCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 48999999999987544444 3445556555443 22234455667779999988888
Q ss_pred ---EEEecCCcccchh
Q 040623 295 ---VWACKNYDGDVQS 307 (443)
Q Consensus 295 ---Viv~~NlfGDIlS 307 (443)
||.++|-. |||-
T Consensus 290 nvKVI~ATNR~-D~LD 304 (406)
T COG1222 290 NVKVIMATNRP-DILD 304 (406)
T ss_pred CeEEEEecCCc-cccC
Confidence 99999995 6653
No 54
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=25.59 E-value=73 Score=26.05 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 040623 215 DESICSFAEASMNTAYQKKWPLYLST 240 (443)
Q Consensus 215 ~~~~eRiar~AFe~A~~r~~kVt~v~ 240 (443)
.+.+++.+++|+++|+..+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45678999999999999877766655
No 55
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.80 E-value=58 Score=33.89 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=15.9
Q ss_pred cEEEECCC--cchHHHHHHHH
Q 040623 38 PIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 38 ~I~vi~GD--GIGpEv~~~~~ 56 (443)
+|++-.|| ||||||+-.++
T Consensus 5 ~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 5 PLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred eEEEeCCCCcchHHHHHHHHH
Confidence 58888998 99999887664
No 56
>PRK12862 malic enzyme; Reviewed
Probab=24.73 E-value=3.4e+02 Score=31.50 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=64.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC--CEEEEeCCccc---cccchHHHHHHHHHHHhhccCccccCCeEEe-eeehhHHH
Q 040623 211 MYNTDESICSFAEASMNTAYQKKW--PLYLSTKNTIL---KNYDGRFKDIFQEVYEAQWKSKFEAAGIWYE-HRLIDDMV 284 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~--kVt~v~KaNvl---~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~-~~~VDa~~ 284 (443)
.-.|.+...++++.+.++++.-+. ||-+..-+|.- ....-.-++.++.. .+++| |+.++ ++-.|++.
T Consensus 607 ~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiell-r~~~~------g~~VdGPl~aDtAf 679 (763)
T PRK12862 607 EDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEIL-RERAP------DLEVDGEMHGDAAL 679 (763)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHH-HhcCC------CcEEEcCCCHHHHc
Confidence 445678888999999999997653 66666333432 22333556666665 67888 77776 66778885
Q ss_pred HHHhh---CC-----Cce-EEEecCCc-ccchhhhhhhhcCC
Q 040623 285 AYALK---SE-----GGY-VWACKNYD-GDVQSDFLAQGFGS 316 (443)
Q Consensus 285 ~~Lv~---~P-----~~F-Viv~~Nlf-GDIlSDlaA~l~Gg 316 (443)
..-+. .| +.| |+|++|+. |+|.--+..-+.|+
T Consensus 680 ~~~~~~~K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~gv 721 (763)
T PRK12862 680 DEELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAGN 721 (763)
T ss_pred CHHHHhhcCCCCccCCCCCEEEecChhHhhHHHHHHHHhccC
Confidence 44222 22 225 99999986 78877776665543
No 57
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.41 E-value=2e+02 Score=30.02 Aligned_cols=112 Identities=17% Similarity=0.082 Sum_probs=65.9
Q ss_pred hhccCccccCCeEEeeeehhHHHHHHhh--CCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccc
Q 040623 262 AQWKSKFEAAGIWYEHRLIDDMVAYALK--SEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 339 (443)
Q Consensus 262 ~eyp~~f~~~~I~~~~~~VDa~~~~Lv~--~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HG 339 (443)
++||.||.+. .-+.-+.-....++.. +++.-++||..-|-+++.+....+- ++... .-+.||
T Consensus 21 ~~~PKQFl~L--~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~----------~~~~~-~illEP--- 84 (333)
T COG0836 21 KDYPKQFLKL--FGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEID----------IENAA-GIILEP--- 84 (333)
T ss_pred ccCCccceee--CCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhh----------hcccc-ceEecc---
Confidence 5688888533 2245555555556655 3445588999999999999887642 22111 158999
Q ss_pred cccccchhhcCCCCcccChhhHHHHHHHHHHhhcc-----c---CCCcchHHHHHHHHHHHHHHHhcCCcc
Q 040623 340 TVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAK-----L---DGNPRLLDFTEKLEAACIATVESGKMT 402 (443)
Q Consensus 340 SApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~-----~---~~~~~l~~~A~~I~~Av~~~l~~G~~T 402 (443)
.|||. |.-+| +|+....++-|. + +-=.+..++.+++++|...+-+..++|
T Consensus 85 ----------~gRnT-ApAIA--~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 85 ----------EGRNT-APAIA--LAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred ----------CCCCc-HHHHH--HHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 68888 65444 355555555331 0 000114567888888876554433455
No 58
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=23.65 E-value=1.4e+02 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhcc
Q 040623 223 EASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWK 265 (443)
Q Consensus 223 r~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp 265 (443)
.||+|+|+ ||-+|.++. + +-.-..++.+|+ +++|+
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI-~~~~~ 98 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEI-EEKYK 98 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHH-HHHhC
Confidence 36788886 566777765 2 445566777777 56665
No 59
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.35 E-value=3.6e+02 Score=25.32 Aligned_cols=82 Identities=9% Similarity=0.006 Sum_probs=52.2
Q ss_pred EEEECC-CcchHHHHHHHHHHHhcCCCceEEEEEe-c---Cchh----hhccCCcccH----HHHHHHHhcCeEEEeccc
Q 040623 39 IVEMDG-DEMTRVIWKLIKDKLINPFLELDIKYFD-L---GLPN----RDATDDQVTI----QSAQATLKYNVAIKCATI 105 (443)
Q Consensus 39 I~vi~G-DGIGpEv~~~~~~~~~~~~~~i~~~~~~-~---G~~~----~~~~g~~lp~----etl~~~k~~da~LkG~v~ 105 (443)
|...|= +|-.-.+.+++++-+.+.|.+.+...+. . +... +.+....+++ +.++.+.++|++++|.
T Consensus 6 I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs-- 83 (207)
T COG0655 6 INGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS-- 83 (207)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC--
Confidence 333443 8888899999998888788887777654 1 2222 1212245554 4555599999999864
Q ss_pred CCCcchhhhhhhhccCCCcchhhhhhcCc
Q 040623 106 TPDEVRVKEFNLKRMWKSPNGTIRNILNG 134 (443)
Q Consensus 106 tp~~~~~~~~~~~~~~~s~~~~LR~~ldl 134 (443)
|.+ +..+..+|+.-+|-
T Consensus 84 -Pvy-----------~g~vsa~~K~fiDR 100 (207)
T COG0655 84 -PVY-----------FGNVSAQMKAFIDR 100 (207)
T ss_pred -Cee-----------cCCchHHHHHHHhh
Confidence 432 23345677777773
No 60
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.30 E-value=2.3e+02 Score=21.34 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcCCcccchh
Q 040623 383 DFTEKLEAACIATVESGKMTKDLA 406 (443)
Q Consensus 383 ~~A~~I~~Av~~~l~~G~~T~Dlg 406 (443)
....++.+++.+.+.+|.-||+|+
T Consensus 10 tlG~aL~dtLDeli~~~~I~p~La 33 (49)
T PF02268_consen 10 TLGIALTDTLDELIQEGKITPQLA 33 (49)
T ss_dssp HHHHHHHHHHHHHHHTTSS-HHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHH
Confidence 367789999999999998888886
No 61
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=22.23 E-value=1e+02 Score=25.57 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCc
Q 040623 216 ESICSFAEASMNTAYQKKWPLYLSTKNT 243 (443)
Q Consensus 216 ~~~eRiar~AFe~A~~r~~kVt~v~KaN 243 (443)
+.+++++++|+.+|++.+.+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEEe
Confidence 5688999999999998777877766433
No 62
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=21.86 E-value=72 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=16.4
Q ss_pred ccEEEECCC--cchHHHHHHHH
Q 040623 37 NPIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 37 ~~I~vi~GD--GIGpEv~~~~~ 56 (443)
++|++--|| ||||||+-.++
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 468888898 99999987664
No 63
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=21.71 E-value=75 Score=33.03 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.8
Q ss_pred ccEEEECCC--cchHHHHHHHH
Q 040623 37 NPIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 37 ~~I~vi~GD--GIGpEv~~~~~ 56 (443)
.+|++--|| ||||||+-.++
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHH
Confidence 468999998 99999987765
No 64
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=21.57 E-value=2e+02 Score=28.28 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHhCCC--CEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeeehhHHH-HHHhhCCCce
Q 040623 226 MNTAYQKKW--PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMV-AYALKSEGGY 294 (443)
Q Consensus 226 Fe~A~~r~~--kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~VDa~~-~~Lv~~P~~F 294 (443)
.+||.+.++ +|.+++--.-...|-.| +.+| .+.|+ .|.++.+.-|++. ..++++-..|
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l----~d~V-ekkY~------~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRL----FDAV-EKKYG------NIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHH----HHHH-HHhcC------ceEEEEEcchhHHHHHHHHhccch
Confidence 577887766 78888766666666544 5567 78999 9999999999995 6688877665
No 65
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.92 E-value=78 Score=33.09 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=16.9
Q ss_pred ccEEEECCC--cchHHHHHHHH
Q 040623 37 NPIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 37 ~~I~vi~GD--GIGpEv~~~~~ 56 (443)
.+|++-.|| ||||||+-.++
T Consensus 10 p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 10 PRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CcEEEeCCCCcchHHHHHHHHH
Confidence 468999998 99999987765
No 66
>PRK15005 universal stress protein F; Provisional
Probab=20.85 E-value=1.2e+02 Score=25.88 Aligned_cols=23 Identities=9% Similarity=-0.150 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 040623 218 ICSFAEASMNTAYQKKWPLYLST 240 (443)
Q Consensus 218 ~eRiar~AFe~A~~r~~kVt~v~ 240 (443)
+++.+++|+++|++.+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 67899999999998777777655
No 67
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.76 E-value=81 Score=32.74 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=16.8
Q ss_pred ccEEEECCC--cchHHHHHHHH
Q 040623 37 NPIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 37 ~~I~vi~GD--GIGpEv~~~~~ 56 (443)
.+|++-.|| ||||||+-.++
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 468899998 99999987775
No 68
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=20.66 E-value=4.2e+02 Score=30.02 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=69.9
Q ss_pred cCCCCCCccEEEe-cCCceeEEEEeCCCCCcceeeeee-ecC-CcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 040623 164 FGDQYRATDAVIQ-GPGKLKLVFVPDGLNQKTEWEVYS-FTG-AGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLST 240 (443)
Q Consensus 164 ~~d~~~~id~viv-rent~e~~y~~~~g~~~~~~~~~~-~~~-~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~ 240 (443)
.+|-|.+---+++ ...++...|++.+|... . .+. .+- ..++.++.++|.+.-+.+.+..++-|++.+--..+=-
T Consensus 178 ~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~-v--LK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHl 254 (741)
T TIGR00178 178 NGDFYGSEKSATIDAAGSVKIELIAKDGSST-V--LKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHL 254 (741)
T ss_pred CCCCcCCceeEEecCCCeEEEEEEcCCCCEE-E--ecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeee
Confidence 3555544333333 44456667777655321 0 111 111 2457788999999999999999999998865455555
Q ss_pred CCccccccchH-H---HH-HHHHHHHhhccCccccCCeEEeeeehh
Q 040623 241 KNTILKNYDGR-F---KD-IFQEVYEAQWKSKFEAAGIWYEHRLID 281 (443)
Q Consensus 241 KaNvl~~tdgl-f---~~-~~~ev~a~eyp~~f~~~~I~~~~~~VD 281 (443)
|++-||.+|-. | -+ -|+++| +.|.+.|.+.|+..+.=+-|
T Consensus 255 KATMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGlgd 299 (741)
T TIGR00178 255 KATMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGIGD 299 (741)
T ss_pred hheeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcchHH
Confidence 99999988842 2 12 233443 44666777778777764444
No 69
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.52 E-value=2.8e+02 Score=26.07 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=45.6
Q ss_pred EEEECC----CcchHHHHHHHHHHHhcCCCceEEEEE-ecCchhhh--ccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 39 IVEMDG----DEMTRVIWKLIKDKLINPFLELDIKYF-DLGLPNRD--ATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 39 I~vi~G----DGIGpEv~~~~~~~~~~~~~~i~~~~~-~~G~~~~~--~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
|.+|.| .+--.-+.+.+.+.+.+.+.++++... ++..+... ..+.+--.+..+.++++|+++++ +|.|
T Consensus 3 Il~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y-- 77 (191)
T PRK10569 3 VITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY-- 77 (191)
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc--
Confidence 455544 334455666666666656655544332 22111111 12233344677888999999965 5654
Q ss_pred hhhhhhhccCCCcchhhhhhcCce
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGT 135 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldly 135 (443)
+.|....|..-||..
T Consensus 78 ---------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ---------KASFSGALKTLLDLL 92 (191)
T ss_pred ---------CCCCCHHHHHHHHhC
Confidence 234446777778753
Done!