Query 040623
Match_columns 443
No_of_seqs 136 out of 1345
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lwd_A Isocitrate dehydrogenas 100.0 7E-114 2E-118 891.0 33.2 409 31-440 3-413 (413)
2 3us8_A Isocitrate dehydrogenas 100.0 9E-114 3E-118 891.1 33.2 413 14-437 12-425 (427)
3 2qfy_A Isocitrate dehydrogenas 100.0 4E-111 1E-115 873.4 31.8 407 28-438 14-424 (427)
4 1zor_A Isocitrate dehydrogenas 100.0 6E-111 2E-115 866.4 32.8 394 30-435 1-397 (399)
5 2uxq_A Isocitrate dehydrogenas 100.0 9E-111 3E-115 865.3 31.2 397 32-434 2-398 (402)
6 4aoy_A Isocitrate dehydrogenas 100.0 3E-108 1E-112 843.9 31.6 399 30-434 1-399 (402)
7 3flk_A Tartrate dehydrogenase/ 100.0 1E-105 4E-110 815.6 28.7 348 36-434 5-361 (364)
8 1x0l_A Homoisocitrate dehydrog 100.0 3E-105 1E-109 804.2 30.6 327 37-434 2-331 (333)
9 3udu_A 3-isopropylmalate dehyd 100.0 3E-106 1E-110 818.3 23.1 341 37-435 7-357 (361)
10 3u1h_A 3-isopropylmalate dehyd 100.0 2E-105 5E-110 817.9 27.3 350 33-435 20-378 (390)
11 3vmk_A 3-isopropylmalate dehyd 100.0 9E-106 3E-110 818.3 24.6 350 36-434 13-372 (375)
12 3r8w_A 3-isopropylmalate dehyd 100.0 4E-105 1E-109 818.7 24.4 351 35-438 41-402 (405)
13 2y3z_A 3-isopropylmalate dehyd 100.0 7E-105 2E-109 808.4 23.2 338 37-436 4-350 (359)
14 3ty4_A Probable homoisocitrate 100.0 4E-104 1E-108 804.0 28.7 332 37-434 11-365 (366)
15 1cnz_A IPMDH, IMDH, protein (3 100.0 2E-104 8E-109 806.5 24.8 345 37-434 5-360 (363)
16 1wpw_A 3-isopropylmalate dehyd 100.0 2E-103 6E-108 792.5 27.8 327 37-433 2-335 (336)
17 3blx_B Isocitrate dehydrogenas 100.0 2E-103 6E-108 796.6 26.7 330 32-433 17-354 (354)
18 1vlc_A 3-isopropylmalate dehyd 100.0 1E-103 4E-108 800.4 24.5 341 37-435 13-364 (366)
19 3dms_A Isocitrate dehydrogenas 100.0 3E-103 1E-107 812.3 26.6 354 36-433 36-426 (427)
20 1a05_A IPMDH, IMDH, 3-isopropy 100.0 1E-103 5E-108 800.2 23.3 344 37-434 2-355 (358)
21 3blx_A Isocitrate dehydrogenas 100.0 9E-103 3E-107 790.2 25.0 330 32-434 13-347 (349)
22 2iv0_A Isocitrate dehydrogenas 100.0 2E-102 8E-107 802.7 27.4 355 31-434 20-410 (412)
23 2e0c_A 409AA long hypothetical 100.0 5E-102 2E-106 800.4 28.8 355 31-434 17-407 (409)
24 2d1c_A Isocitrate dehydrogenas 100.0 1E-101 4E-106 806.8 29.4 341 30-436 9-358 (496)
25 1w0d_A 3-isopropylmalate dehyd 100.0 8E-102 3E-106 781.2 24.6 332 37-433 2-337 (337)
26 2d4v_A Isocitrate dehydrogenas 100.0 2E-101 7E-106 798.4 28.0 349 37-433 27-429 (429)
27 1hqs_A Isocitrate dehydrogenas 100.0 2E-101 5E-106 798.8 26.8 356 31-433 12-422 (423)
28 1tyo_A Isocitrate dehydrogenas 100.0 6E-101 2E-105 796.0 29.1 349 37-434 36-422 (435)
29 1itw_A Isocitrate dehydrogenas 97.1 0.016 5.4E-07 61.5 17.3 184 205-399 453-644 (741)
30 2b0t_A NADP isocitrate dehydro 97.0 0.016 5.4E-07 61.5 16.7 184 205-399 449-640 (738)
31 4aty_A Terephthalate 1,2-CIS-d 90.2 0.15 5.1E-06 51.4 3.2 134 211-371 195-341 (349)
32 1yxo_A 4-hydroxythreonine-4-ph 89.9 0.17 5.8E-06 50.7 3.2 137 211-371 173-323 (328)
33 2hi1_A 4-hydroxythreonine-4-ph 89.7 0.17 6E-06 50.6 3.2 136 211-370 180-328 (330)
34 3lxy_A 4-hydroxythreonine-4-ph 89.6 0.18 6.2E-06 50.6 3.2 137 211-371 178-328 (334)
35 3tsn_A 4-hydroxythreonine-4-ph 87.4 0.3 1E-05 49.5 3.2 67 292-371 294-363 (367)
36 4aoy_A Isocitrate dehydrogenas 82.7 0.43 1.5E-05 49.1 1.7 17 170-187 125-141 (402)
37 3us8_A Isocitrate dehydrogenas 62.8 1.3 4.6E-05 45.7 -0.5 17 170-187 148-164 (427)
38 1itw_A Isocitrate dehydrogenas 48.4 27 0.00092 37.4 6.4 106 173-281 188-299 (741)
39 2uxq_A Isocitrate dehydrogenas 48.2 2.6 8.8E-05 43.2 -1.2 17 170-187 124-140 (402)
40 2b0t_A NADP isocitrate dehydro 43.7 27 0.00094 37.4 5.6 105 174-281 187-297 (738)
41 1nha_A TFIIF-alpha, transcript 40.2 30 0.001 27.6 4.1 48 389-440 21-69 (82)
42 1e2b_A Enzyme IIB-cellobiose; 38.2 87 0.003 25.4 6.9 54 38-104 5-59 (106)
43 1lwd_A Isocitrate dehydrogenas 28.2 9.2 0.00031 39.2 -1.0 17 170-187 126-142 (413)
44 1i27_A Transcription factor II 27.0 36 0.0012 26.6 2.4 48 389-440 12-60 (73)
45 2e0c_A 409AA long hypothetical 25.5 33 0.0011 35.1 2.6 20 155-174 143-162 (409)
46 2d4v_A Isocitrate dehydrogenas 23.7 33 0.0011 35.4 2.2 20 155-174 147-166 (429)
47 2iv0_A Isocitrate dehydrogenas 23.4 36 0.0012 34.9 2.4 20 155-174 143-162 (412)
48 1yxo_A 4-hydroxythreonine-4-ph 23.4 44 0.0015 33.2 3.0 19 37-55 3-23 (328)
49 1zor_A Isocitrate dehydrogenas 21.4 18 0.0006 36.9 -0.4 17 170-187 125-141 (399)
50 3s3t_A Nucleotide-binding prot 20.4 66 0.0022 26.0 3.1 27 215-241 15-41 (146)
51 2hi1_A 4-hydroxythreonine-4-ph 20.2 59 0.002 32.3 3.1 19 38-56 8-28 (330)
No 1
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=7.1e-114 Score=890.96 Aligned_cols=409 Identities=70% Similarity=1.168 Sum_probs=366.2
Q ss_pred ccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623 31 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV 110 (443)
Q Consensus 31 ~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~ 110 (443)
+||+|.+||++|||||||||||++++++|..++++|+|+++++|++++++||+++|++++++|+++|++||||++||.+.
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 68999999999999999999999999999988999999999999999999999999999999999999999999999865
Q ss_pred hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
.+|++.+.++|+|+|++||++||||+|+||+.|+++|+++|+++.|++++||||++.|.++|++++|||+.++.|.++.|
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 56543344578999999999999999999998889998889999999999999999999999999999987888998766
Q ss_pred CCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc
Q 040623 191 NQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~ 270 (443)
+++.......++. .+++++.++|+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++||++|.+
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~ 241 (413)
T 1lwd_A 163 SSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241 (413)
T ss_dssp CCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccccccccccCC-CcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccC
Confidence 4322222222222 345577899999999999999999999988999999999999999999999999954799988888
Q ss_pred CCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcC
Q 040623 271 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 350 (443)
Q Consensus 271 ~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iA 350 (443)
.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+|||||||+++++|
T Consensus 242 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~a 321 (413)
T 1lwd_A 242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 321 (413)
T ss_dssp TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred CeEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhc
Confidence 88999999999999999999999999999999999999999999999999999999987448999999999999999999
Q ss_pred CCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccC-CCCC-CCCccCHHHHHHH
Q 040623 351 GGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHG-PQVA-RPQYLNTEEFIDA 428 (443)
Q Consensus 351 Gk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G-~~~~-~~~~~sT~e~~da 428 (443)
||+++|||+|+|||++|||+|+|+.+.++++.++|++|++||.+++++|++|+|||++..| +++. .++.++|+||+|+
T Consensus 322 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~da 401 (413)
T 1lwd_A 322 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDT 401 (413)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHH
T ss_pred CCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHHH
Confidence 9996699999999999999999998888889999999999999999999999999732213 1111 1136899999999
Q ss_pred HHHHHHHHhhhh
Q 040623 429 VTETLKERMSIK 440 (443)
Q Consensus 429 V~~~l~~~~~~~ 440 (443)
|+++|++.|.+|
T Consensus 402 V~~~l~~~~~~~ 413 (413)
T 1lwd_A 402 IKSNLDRALGRQ 413 (413)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhhcC
Confidence 999998888776
No 2
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=8.8e-114 Score=891.13 Aligned_cols=413 Identities=68% Similarity=1.089 Sum_probs=363.5
Q ss_pred cCCccccccccccccccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHH
Q 040623 14 DCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQAT 93 (443)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~ 93 (443)
+-|++|---+ .+|.||+|.++|++|||||||||||++++++|.+++++|+|+++++|++++++||+++|++++++|
T Consensus 12 ~~~~~~~~~~----~~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~ai 87 (427)
T 3us8_A 12 DLGTENLYFQ----SMMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAI 87 (427)
T ss_dssp -----------------CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHH
T ss_pred ccCcceEEee----cccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHH
Confidence 4466654444 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEecccCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccE
Q 040623 94 LKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDA 173 (443)
Q Consensus 94 k~~da~LkG~v~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~ 173 (443)
+++||+||||++||.+++++++++..+|+|+|++|||+||||||+||+.|+++|..++++..|++++||||+|.|.++|+
T Consensus 88 k~~da~LkGav~tP~~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~ 167 (427)
T 3us8_A 88 KKHGVGVKCATITPDEGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDF 167 (427)
T ss_dssp HHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEE
T ss_pred HHCCEEEECCccCCCccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCcee
Confidence 99999999999999987666666777899999999999999999999878999988888889999999999999999999
Q ss_pred EEecCCceeEEEE-eCCCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHH
Q 040623 174 VIQGPGKLKLVFV-PDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRF 252 (443)
Q Consensus 174 vivrent~e~~y~-~~~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf 252 (443)
.++|+++ +.+|. .+.|. .....+.++++ .++++++++|+++++||+|+||+||++|++|||+|||+|||+.|||+|
T Consensus 168 ~~~~~~~-~~l~~~~~~G~-~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglf 244 (427)
T 3us8_A 168 KFPGKGK-LSIKFVGEDGQ-TIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRF 244 (427)
T ss_dssp EECSSEE-EEEEEEETTSC-EEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHH
T ss_pred EEecCCc-ceeeeeccccc-cccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHH
Confidence 9999998 55554 44442 11222223333 567788899999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHhhccCccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceE
Q 040623 253 KDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI 332 (443)
Q Consensus 253 ~~~~~ev~a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a 332 (443)
+++|+|||+++||++|++.+|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++
T Consensus 245 r~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a 324 (427)
T 3us8_A 245 KDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTV 324 (427)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCE
T ss_pred HHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeE
Confidence 99999996559999898889999999999999999999999999999999999999999999999999999999886459
Q ss_pred EEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCC
Q 040623 333 EAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGP 412 (443)
Q Consensus 333 ~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~ 412 (443)
||||+|||||||++++||||+++|||+|+|||++|||+|+|++++++++.++|++|++||.+++++|++|+|||+.+.
T Consensus 325 ~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~-- 402 (427)
T 3us8_A 325 EAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLIG-- 402 (427)
T ss_dssp EEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHC--
T ss_pred EEeCCCCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCcccccccc--
Confidence 999999999999999999999889999999999999999999888888899999999999999999999999985321
Q ss_pred CCCCCCccCHHHHHHHHHHHHHHHh
Q 040623 413 QVARPQYLNTEEFIDAVTETLKERM 437 (443)
Q Consensus 413 ~~~~~~~~sT~e~~daV~~~l~~~~ 437 (443)
...+.++|+||+|+|+++|++.|
T Consensus 403 --~~~~~~~T~e~~daV~~~l~~~l 425 (427)
T 3us8_A 403 --PDQPWLSTTGFLDKIDENLRKAM 425 (427)
T ss_dssp --TTCCCBCHHHHHHHHHHHHHHHC
T ss_pred --cCCcccCHHHHHHHHHHHHHHHh
Confidence 01347999999999999998765
No 3
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=3.6e-111 Score=873.39 Aligned_cols=407 Identities=65% Similarity=1.027 Sum_probs=359.3
Q ss_pred cccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCC
Q 040623 28 MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITP 107 (443)
Q Consensus 28 ~~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp 107 (443)
-+++||+|.++|++|||||||||||+++.+.+..++++|+|+++++|++++++||+++|++++++|+++|++||||++||
T Consensus 14 ~~~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP 93 (427)
T 2qfy_A 14 HAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITP 93 (427)
T ss_dssp --CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCC
T ss_pred cccccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCC
Confidence 34589999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEE-
Q 040623 108 DEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFV- 186 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~- 186 (443)
..+++++.++.++|+|+|+.||+.||||+|+||++|+++|+++|||++||++.||++++.|.++|++|+|||| |++|+
T Consensus 94 ~~~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnt-eg~Y~~ 172 (427)
T 2qfy_A 94 DEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGS-LELVYK 172 (427)
T ss_dssp CHHHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEE-EEEEEE
T ss_pred CCcccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCc-cceeee
Confidence 7544433344557999999999999999999999888999888999999999999999999999999999999 99998
Q ss_pred eCCCCCc--ceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhc
Q 040623 187 PDGLNQK--TEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQW 264 (443)
Q Consensus 187 ~~~g~~~--~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~ey 264 (443)
+++++|. .+++...+.+ .+++...++|+++++||+|+||+||++|++|||+|||+|||+.|||+||++|+||++++|
T Consensus 173 ~e~teG~~~~~~~~~~~~~-~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eY 251 (427)
T 2qfy_A 173 PSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQY 251 (427)
T ss_dssp ESCTTTSCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHT
T ss_pred ccccCCccccccccccCCC-ceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhC
Confidence 4553331 1222211112 455555899999999999999999999988999999999999999999999999954899
Q ss_pred cCccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEeccccccccc
Q 040623 265 KSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 344 (443)
Q Consensus 265 p~~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi 344 (443)
|++|++.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||||||
T Consensus 252 pd~~~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi 331 (427)
T 2qfy_A 252 KSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRH 331 (427)
T ss_dssp HHHHHHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHH
T ss_pred CCcccCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccc
Confidence 98887778999999999999999999999999999999999999999999999999999999986348999999999999
Q ss_pred chhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHh-cCCcccchhhhccCCCCCCCCccCHH
Q 040623 345 YRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVE-SGKMTKDLALLIHGPQVARPQYLNTE 423 (443)
Q Consensus 345 ~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~-~G~~T~Dlg~~~~G~~~~~~~~~sT~ 423 (443)
++.+|||||++|||+|+|||++|||+|+|+.++|+++.++|++|++||.++++ +|++|+|||++. |+ ..+.+.++|+
T Consensus 332 ~~~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~-g~-~~~~~~~~T~ 409 (427)
T 2qfy_A 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALAC-GN-NERSAYVTTE 409 (427)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-TC-CSGGGCCCHH
T ss_pred cchhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCCccccccccC-Cc-cccCCCCCHH
Confidence 88889999944999999999999999999998888899999999999999999 999999998421 30 0111247999
Q ss_pred HHHHHHHHHHHHHhh
Q 040623 424 EFIDAVTETLKERMS 438 (443)
Q Consensus 424 e~~daV~~~l~~~~~ 438 (443)
||+|+|+++|++.|.
T Consensus 410 e~~daV~~~l~~~l~ 424 (427)
T 2qfy_A 410 EFLDAVEKRLQKEIK 424 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999976654
No 4
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-111 Score=866.43 Aligned_cols=394 Identities=54% Similarity=0.911 Sum_probs=352.3
Q ss_pred cccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCc
Q 040623 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 30 ~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|.||+|.+||++|||||||||||++++++|.+++++|+|+++++|++++++||+++|++++++|+++|++||||++||.+
T Consensus 1 ~~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~ 80 (399)
T 1zor_A 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA 80 (399)
T ss_dssp CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
..+|++.+.++++|+|++|||+||||+|+||++|+++|+.+|+++.|++++||||++.|.++|++++||||.|+.|.++
T Consensus 81 ~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e- 159 (399)
T 1zor_A 81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNK- 159 (399)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESS-
T ss_pred ccCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEecc-
Confidence 5455433345789999999999999999999988899988899999999999999999999999999999988899875
Q ss_pred CCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHh---hccC
Q 040623 190 LNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEA---QWKS 266 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~---eyp~ 266 (443)
. + .++....++. .+++++.++|+++++||+|+||+||++|++|||+|||+|||+.|||+|+++|+|||++ +||
T Consensus 160 ~-~-~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp- 235 (399)
T 1zor_A 160 E-N-KTLLVHKFEG-NGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELE- 235 (399)
T ss_dssp S-C-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHH-
T ss_pred c-c-ccceeeccCC-ceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCC-
Confidence 1 1 1222222222 3455778899999999999999999999889999999999999999999999999542 777
Q ss_pred ccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccch
Q 040623 267 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 346 (443)
Q Consensus 267 ~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~ 346 (443)
+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||++
T Consensus 236 ---~~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~~fEpvHGSAPdi~~ 311 (399)
T 1zor_A 236 ---KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYY 311 (399)
T ss_dssp ---HTTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHHHH
T ss_pred ---CCcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCC-CeEEeCCCCcccccch
Confidence 235999999999999999999999999999999999999999999999999999999987 4899999999999999
Q ss_pred hhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHH
Q 040623 347 VHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 347 ~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
++||||+++|||+|+|||++|||+|+|+.+.+++|.++|++|++||.+++++|++|+|||++..|. +.+.++|+||+
T Consensus 312 ~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~---~~~~~~T~e~~ 388 (399)
T 1zor_A 312 RYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPP---IDKYVTLEEFI 388 (399)
T ss_dssp HHTTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSC---CCCCCCHHHHH
T ss_pred hhhcCCCCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCCCHHHHH
Confidence 999999955999999999999999999988777888999999999999999999999998532230 01248999999
Q ss_pred HHHHHHHHH
Q 040623 427 DAVTETLKE 435 (443)
Q Consensus 427 daV~~~l~~ 435 (443)
|+|+++|++
T Consensus 389 daV~~~l~~ 397 (399)
T 1zor_A 389 DEVKKNLEK 397 (399)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999954
No 5
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=8.6e-111 Score=865.34 Aligned_cols=397 Identities=50% Similarity=0.823 Sum_probs=352.4
Q ss_pred cccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 32 ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
||+|.++|++|||||||||||++++++|.+++++|+|+++++|++++++||+++|++++++|+++|++||||++||.++.
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
+|++++.++++|+|++||++||||+|+||++++++|+.+|+++.|++++||||++.|.++|+++.+++..+..+.++.|.
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~ 161 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK 161 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCc
Confidence 65544445789999999999999999999988899888888889999999999999999999986655545455544432
Q ss_pred CcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccC
Q 040623 192 QKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~ 271 (443)
+ ..++...++. .+++++.++|+++++||+|+||+||++|++|||+|||+|||+.|||+|+++|+|||+++||++|.+.
T Consensus 162 ~-~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 239 (402)
T 2uxq_A 162 E-TRQTIMEVDE-PAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAA 239 (402)
T ss_dssp E-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred c-ccccccccCC-CceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCC
Confidence 1 1112222222 4566778899999999999999999999889999999999999999999999999547999777777
Q ss_pred CeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCC
Q 040623 272 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 351 (443)
Q Consensus 272 ~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAG 351 (443)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||+++++||
T Consensus 240 ~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~lfEpvHGSAPdi~~~~~aG 318 (402)
T 2uxq_A 240 GIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKG 318 (402)
T ss_dssp TCCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCC-CeEEeCCCCChhhhhhhhhcC
Confidence 7999999999999999999999999999999999999999999999999999999987 489999999999999999999
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHH
Q 040623 352 GETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTE 431 (443)
Q Consensus 352 k~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 431 (443)
|+++|||+|+|||++|||+|+|+.+.++++.++|++|++||.+++++|++|+|||++..| .+++.++|+||+|+|++
T Consensus 319 k~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~~g---~~~~~~~T~e~~daI~~ 395 (402)
T 2uxq_A 319 ERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEP---AAIKVLDSIEFIDELGK 395 (402)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSS---CCSEECCHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCC---CCCCCcCHHHHHHHHHH
Confidence 995599999999999999999998888889999999999999999999999999843222 01125899999999999
Q ss_pred HHH
Q 040623 432 TLK 434 (443)
Q Consensus 432 ~l~ 434 (443)
+|+
T Consensus 396 ~l~ 398 (402)
T 2uxq_A 396 RLQ 398 (402)
T ss_dssp HHH
T ss_pred HHh
Confidence 994
No 6
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=3.3e-108 Score=843.93 Aligned_cols=399 Identities=56% Similarity=0.925 Sum_probs=332.7
Q ss_pred cccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCc
Q 040623 30 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 30 ~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
|.||+|++||++|||||||||+|+.+++++..++++|+|+++++|++++++||+++|++++++|+++||+||||++||.+
T Consensus 1 ~~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~ 80 (402)
T 4aoy_A 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNA 80 (402)
T ss_dssp -CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
++++++++.++|+|+|++|||.||||+|+||+.++++|+.+++|..|++++||||+|.|.++++.+..++..+..|..+.
T Consensus 81 ~~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (402)
T 4aoy_A 81 QRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSEN 160 (402)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETT
T ss_pred cccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccC
Confidence 76666666778999999999999999999998777888777777778888888888888888877655555565566554
Q ss_pred CCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 190 LNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
|.. +.+.+.++++ .+++++.++|+++++||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++||++|+
T Consensus 161 g~~-~~~~~~~~~~-~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~ 238 (402)
T 4aoy_A 161 GEV-SRQTIHEFDG-PGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238 (402)
T ss_dssp SCE-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred Ccc-cccccccccC-CeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCccccc
Confidence 422 1222233333 45668899999999999999999999999999999999999999999999999996559999999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhc
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 349 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~i 349 (443)
+.+|+++|++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .++|||+|||||||++++|
T Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~i 317 (402)
T 4aoy_A 239 AKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHL 317 (402)
T ss_dssp HTTCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC-------------
T ss_pred CCCeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999887 5899999999999999999
Q ss_pred CCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHH
Q 040623 350 KGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAV 429 (443)
Q Consensus 350 AGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 429 (443)
|||+++|||+|+|||++|||+|+|++++++++.++|++|++||.+++++|++|+|||+..+| ...+.++|+||+|+|
T Consensus 318 aGk~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~~T~Dlgg~~~~---~~~~~~~T~ef~~av 394 (402)
T 4aoy_A 318 KGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLSEV---PEKKIVNTEDFLKEI 394 (402)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTCCC---SCCEEECHHHHHHHH
T ss_pred cCCCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCCCCccccccccc---CCCCCcCHHHHHHHH
Confidence 99997799999999999999999999888888999999999999999999999999842211 113457999999999
Q ss_pred HHHHH
Q 040623 430 TETLK 434 (443)
Q Consensus 430 ~~~l~ 434 (443)
+++|+
T Consensus 395 ~~~l~ 399 (402)
T 4aoy_A 395 RKTFE 399 (402)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99985
No 7
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.3e-105 Score=815.57 Aligned_cols=348 Identities=18% Similarity=0.171 Sum_probs=311.5
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCc-hhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGL-PNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV 110 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~-~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~ 110 (443)
.++|++||||||||||+++++++|.+. +++|+|+++++|+ +++++||+++|++++++|+++|++||||+++|.|
T Consensus 5 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~- 83 (364)
T 3flk_A 5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK- 83 (364)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT-
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc-
Confidence 357999999999999999999988643 7999999999999 9999999999999999999999999999999985
Q ss_pred hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
++. . ..++|+|+.|||+||||||+||+ +++||+++|+. ++..+++|+||+|||| ||+|++..+
T Consensus 84 -~~~--~-~~~~s~~l~LR~~ldlyanvRP~------~~~pg~~splk------~~~~~~vD~vivREnt-eG~Y~g~~~ 146 (364)
T 3flk_A 84 -VPD--H-ISLWGSLLKFRREFDQYVNIRPV------RLFPGVPCALA------NRKVGDIDFVVVRENT-EGEYSSLGG 146 (364)
T ss_dssp -BCH--H-HHHHTTHHHHHHHTTCCEEEEEE------ECCTTCCCSBT------TCCTTSSEEEEEEECS-SBTCCCCEE
T ss_pred -CCC--C-cCcccchHHHHHHhCCeEEEEEE------eccCCcccccc------cccCCCCCEEEEeeCC-CceecCcCc
Confidence 111 0 11357899999999999999997 78889999972 3345789999999999 999996411
Q ss_pred CCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 191 NQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
...... ..+++ ++++||+++++||+|+||+||++|++ |||+|||+|||+.|+|||+++|+|| +++||
T Consensus 147 ------~~~~~~-~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~ev-a~eyp--- 215 (364)
T 3flk_A 147 ------IMFENT-ENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAM-AAHYP--- 215 (364)
T ss_dssp ------EESTTS-TTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHH-HTTCT---
T ss_pred ------eeccCC-CCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHH-HHHCC---
Confidence 110001 14677 67999999999999999999999987 6999999999999999999999999 68999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCc-eEEEecccccccccch
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYR 346 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~-~a~FEp~HGSApdi~~ 346 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+|||||||
T Consensus 216 ---dv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGSAPdi-- 290 (364)
T 3flk_A 216 ---HVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDI-- 290 (364)
T ss_dssp ---TCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTTT--
T ss_pred ---CceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCCchhh--
Confidence 99999999999999999999999 999999999999999999999999999999998862 49999999999998
Q ss_pred hhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHH
Q 040623 347 VHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 347 ~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
||||+ |||+|+|||++|||+|+|+++ +++.++|++|++||.+++++|++|+||| | .+||+||+
T Consensus 291 ---AGk~i-ANP~A~IlS~ammL~~lg~~~--~~~~~~A~~Ie~Av~~~l~~G~~T~Dlg----g-------~~~T~e~~ 353 (364)
T 3flk_A 291 ---FGKNI-ANPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMG----G-------TLSTQQVG 353 (364)
T ss_dssp ---TTSSC-CCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT----C-------CCCHHHHH
T ss_pred ---cCCCc-cCcHHHHHHHHHHHHHhCccc--chhHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHH
Confidence 99999 999999999999999999654 4467799999999999999999999998 7 89999999
Q ss_pred HHHHHHHH
Q 040623 427 DAVTETLK 434 (443)
Q Consensus 427 daV~~~l~ 434 (443)
|+|+++|+
T Consensus 354 ~aV~~~l~ 361 (364)
T 3flk_A 354 AAISDTLA 361 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999995
No 8
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=3.4e-105 Score=804.17 Aligned_cols=327 Identities=21% Similarity=0.211 Sum_probs=304.1
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
++|++||||||||||+++++++|.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
.+++|+|++|||+||||||+||+ +++| +++| ++++|+||+|||| ||+|++. ++
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~------~~~p-~~s~-----------~~~vD~vivREnt-eg~Y~g~------~~ 129 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA------KSRP-VPGS-----------RPGVDLVIVRENT-EGLYVEQ------ER 129 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE------ECCS-STTC-----------CSSCEEEEEEECG-GGTCCCC------EE
T ss_pred --cCccChhHHHHHHcCCEEEEEEE------eecc-CCCC-----------CCCCCEEEEecCc-cceeccc------cc
Confidence 25789999999999999999997 6777 7777 4689999999999 9999853 21
Q ss_pred eeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
. + ++++ ++++||+++++||+|+||+||++|+ +|||+|||+|||+.|||+|+++|+|| +++|| +|+
T Consensus 130 ~-----~-~~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~ev-a~eyp------~I~ 196 (333)
T 1x0l_A 130 R-----Y-LDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEV-AKDFP------LVN 196 (333)
T ss_dssp E-----E-TTEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHH-HTTCT------TSE
T ss_pred c-----C-CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHH-HHHCC------Cce
Confidence 1 2 4577 6799999999999999999999994 58999999999999999999999999 68999 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCC
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 353 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~ 353 (443)
++|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+||||||| ||||
T Consensus 197 ~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPdi-----aGk~ 269 (333)
T 1x0l_A 197 VQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPDI-----AGKG 269 (333)
T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGGG-----TTSS
T ss_pred EEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhhh-----cCCC
Confidence 99999999999999999999 99999999999999999999999999999999986 8999999999998 9999
Q ss_pred cccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 354 TSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 354 i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
+ |||+|+|||++|||+|+|+. ++|++|++||.+++++|++|+||| | +++|+||+|+|+++|
T Consensus 270 i-ANP~A~IlS~ammL~~lg~~-------~~A~~Ie~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~daV~~~l 330 (333)
T 1x0l_A 270 I-ANPTAAILSAAMMLDYLGEK-------EAAKRVEKAVDLVLERGPRTPDLG----G-------DATTEAFTEAVVEAL 330 (333)
T ss_dssp C-CCCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHSCCCGGGT----C-------CCCHHHHHHHHHHHH
T ss_pred C-cCcHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCCccCccC----C-------CCCHHHHHHHHHHHH
Confidence 9 99999999999999999854 499999999999999999999998 7 789999999999999
Q ss_pred H
Q 040623 434 K 434 (443)
Q Consensus 434 ~ 434 (443)
+
T Consensus 331 ~ 331 (333)
T 1x0l_A 331 K 331 (333)
T ss_dssp H
T ss_pred h
Confidence 5
No 9
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=3e-106 Score=818.28 Aligned_cols=341 Identities=21% Similarity=0.201 Sum_probs=307.2
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.|+++
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 56999999999999999999988654 79999999999999999999999999999999999999999999987544
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCC-CCCccEEEecCCceeEEEEeCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQ-YRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~-~~~id~vivrent~e~~y~~~~ 189 (443)
|. ..++++++|+.|||+||||||+||+ +++||++ +||. ++. ++++|+||||||| ||+|++.
T Consensus 87 ~~--~~~~~~~~~l~LRk~ldLyaNvRP~------~~~pg~~~~splk------~~~~~~~vD~vivREnT-eG~Y~g~- 150 (361)
T 3udu_A 87 PI--DQRPERASLLPLRKHFNLFANLRPC------KIYESLTHASPLK------NEIIQKGVDILCVRELT-GGIYFGK- 150 (361)
T ss_dssp CG--GGSHHHHHHHHHHHHHTCCEEEEEE------ECCGGGGGGSSBC------HHHHTTCCEEEEEEECS-SGGGTSC-
T ss_pred CC--CcCccccchHHHHHHcCCEEEEEEe------eccCCccccCCCc------cccccCCCcEEEEcccC-CCeecCc-
Confidence 32 2233444589999999999999997 7888986 8873 122 5789999999999 9999853
Q ss_pred CCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 190 LNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
+++. .+++ ++++||++++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+|| +++||
T Consensus 151 -----~~~~------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~ev-a~eyp--- 214 (361)
T 3udu_A 151 -----QDLG------KESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANV-AKDYQ--- 214 (361)
T ss_dssp -----EEEC------SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHH-GGGCT---
T ss_pred -----cCCc------CceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHH-HHHCC---
Confidence 1111 3456 67999999999999999999999988999999999997 999999999999 78999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~ 347 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 215 ---dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPdI--- 287 (361)
T 3udu_A 215 ---DINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAPDI--- 287 (361)
T ss_dssp ---TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCGGG---
T ss_pred ---CCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChhhh---
Confidence 99999999999999999999999 99999999999999999999999999999999876 69999999999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
||||+ |||+|+|||++|||+| +|+ .++|++|++||.+++++|++|+||| | .+.++|+||+
T Consensus 288 --AGk~i-ANP~A~IlS~amML~~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg----G-----~~~~~T~e~~ 348 (361)
T 3udu_A 288 --AHLNI-ANPIAQILSAALMLKYSFKE-------EQAAQDIENAISLALAQGKMTKDLN----A-----KSYLNTDEMG 348 (361)
T ss_dssp --TTSSC-CCCHHHHHHHHHHHHHTSCC-------HHHHHHHHHHHHHHHHTTCCCTTTC----S-----SSCCCHHHHH
T ss_pred --cCCCc-cCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHcCCcCcCCC----C-----CCccCHHHHH
Confidence 99999 9999999999999999 764 4599999999999999999999998 5 3479999999
Q ss_pred HHHHHHHHH
Q 040623 427 DAVTETLKE 435 (443)
Q Consensus 427 daV~~~l~~ 435 (443)
|+|+++|++
T Consensus 349 ~aV~~~l~~ 357 (361)
T 3udu_A 349 DCILEILKE 357 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999964
No 10
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.5e-105 Score=817.93 Aligned_cols=350 Identities=19% Similarity=0.200 Sum_probs=305.9
Q ss_pred ccccccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCC
Q 040623 33 IKVANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPD 108 (443)
Q Consensus 33 i~~~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~ 108 (443)
-+|.++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 20 ~~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~ 99 (390)
T 3u1h_A 20 GAMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPK 99 (390)
T ss_dssp ----CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCST
T ss_pred cCccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC
Confidence 356678999999999999999999988765 8999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCCCCCccEEEecCCceeEEEE
Q 040623 109 EVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQYRATDAVIQGPGKLKLVFV 186 (443)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~~~~id~vivrent~e~~y~ 186 (443)
|+.+|. ..+ ..+.|+.|||+||||||+||+ +++||++ +||. ++.++++|+||||||| ||+|+
T Consensus 100 ~~~~~~--~~~-~~~~ll~LRk~ldLyANvRP~------k~~pg~~~~splk------~~~~~~vD~vIVREnT-eG~Y~ 163 (390)
T 3u1h_A 100 WDQNPS--ELR-PEKGLLGIRKGLDLFANLRPV------KVYDSLADASPLK------KEVIEGVDLVIVRELT-GGLYF 163 (390)
T ss_dssp TTSSCC--SSS-SSCCHHHHHHHTTEEEEEEEE------ECCGGGTTSSSBC------HHHHSSCEEEEEEECS-SBSCC
T ss_pred cCCCCc--ccC-ccchHHHHHHHhCCeEEEEEe------eccCCccccCCcc------cccccCCcEEEEeeCC-CCeec
Confidence 754331 112 236789999999999999997 7888997 8872 1124689999999999 99999
Q ss_pred eCCCCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhcc
Q 040623 187 PDGLNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWK 265 (443)
Q Consensus 187 ~~~g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp 265 (443)
+... .. ...+ .+++ ++++|||++++||+|+||+||++|++|||+|||+||| .|||||+++|+|| +++||
T Consensus 164 g~~~------~~-~~~g-~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~ev-a~eYP 233 (390)
T 3u1h_A 164 GEPS------ER-YEEG-EEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEV-AKEYP 233 (390)
T ss_dssp --------------CTT-CSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHH-HTTCT
T ss_pred Cccc------cc-cCCC-CceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHH-HhHCC
Confidence 6421 11 0112 3456 6799999999999999999999998899999999999 6999999999999 68999
Q ss_pred CccccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEeccccccccc
Q 040623 266 SKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 344 (443)
Q Consensus 266 ~~f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi 344 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 234 ------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAPDI 306 (390)
T 3u1h_A 234 ------DVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGSAPDI 306 (390)
T ss_dssp ------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCCCTTT
T ss_pred ------CCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCChhhh
Confidence 99999999999999999999999 99999999999999999999999999999999875 59999999999998
Q ss_pred chhhcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHH
Q 040623 345 YRVHQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTE 423 (443)
Q Consensus 345 ~~~~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~ 423 (443)
||||+ |||+|+|||++|||+| +|+ .++|++|++||.+++++|++|+||+.. | .+.+||+
T Consensus 307 -----AGk~i-ANP~A~IlS~amML~~~lg~-------~~~A~~Ie~AV~~vl~~G~~T~Dl~~g--G-----~~~~~T~ 366 (390)
T 3u1h_A 307 -----AGKGI-ANPLATILSAAMMLRYSFGL-------EEEAKAIEKAVEKVLAEGYRTADIAKP--G-----GKYVSTT 366 (390)
T ss_dssp -----TTSSC-SCTHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHTCCBTTTSCS--S-----CCCBCHH
T ss_pred -----cCCCc-CCcHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHcCCcChhhccC--C-----CCccCHH
Confidence 99999 9999999999999999 775 459999999999999999999999310 3 2479999
Q ss_pred HHHHHHHHHHHH
Q 040623 424 EFIDAVTETLKE 435 (443)
Q Consensus 424 e~~daV~~~l~~ 435 (443)
||+|+|+++|+.
T Consensus 367 e~~daV~~~l~~ 378 (390)
T 3u1h_A 367 EMTDEVKAAVVD 378 (390)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999973
No 11
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=8.8e-106 Score=818.33 Aligned_cols=350 Identities=18% Similarity=0.184 Sum_probs=308.9
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|++||++|+++|+++|++||||+++|.|+.
T Consensus 13 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~ 92 (375)
T 3vmk_A 13 SYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEH 92 (375)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred cceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccC
Confidence 468999999999999999999888654 7999999999999999999999999999999999999999999998754
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCC-CCCccEEEecCCceeEEEEeC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQ-YRATDAVIQGPGKLKLVFVPD 188 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~-~~~id~vivrent~e~~y~~~ 188 (443)
+|. ..++++++|++|||+||||||+||+ +++||++ +||+ ++. ++++|+||+|||| ||+|++.
T Consensus 93 ~~~--~~~~~~~~~l~LRk~ldLyaNvRP~------~~~pg~~~~splk------~~~~~~~vD~vIvREnT-eG~Y~g~ 157 (375)
T 3vmk_A 93 LPP--NDQPERGALLPLRGHFELFCNMRPA------KLHPGLEHMSPLR------SDISEKGFDILCVRELT-GGIYFGK 157 (375)
T ss_dssp SCS--TTSHHHHHHHHHHHHTTCCEEEEEE------ECCTTCGGGSSBC------HHHHTTCCEEEEEEECS-SBTTTCS
T ss_pred CCc--cccccccchHHHHHHcCCeEEEEEE------eccCCCcccCCCC------cccccCCCCEEEEeeCC-CCEecCC
Confidence 431 3344566689999999999999998 7888986 8873 112 4689999999999 9999964
Q ss_pred CCCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCc
Q 040623 189 GLNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267 (443)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~ 267 (443)
.. +.....+ .+++ ++++||++++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+|| +++||
T Consensus 158 ~~------~~~~~~~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~ev-a~eyp-- 226 (375)
T 3vmk_A 158 PK------GRQGEGE-NEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEV-AKDYP-- 226 (375)
T ss_dssp SC------EEECCGG-GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH-HTTCT--
T ss_pred cc------ccccCCC-CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHH-HHHCC--
Confidence 11 1111112 3566 67999999999999999999999988999999999998 679999999999 68999
Q ss_pred cccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccch
Q 040623 268 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 346 (443)
Q Consensus 268 f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~ 346 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 227 ----dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPdI-- 299 (375)
T 3vmk_A 227 ----DVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSAPDI-- 299 (375)
T ss_dssp ----TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCTTT--
T ss_pred ----CceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCchhc--
Confidence 99999999999999999999999 99999999999999999999999999999999986 69999999999998
Q ss_pred hhcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHH
Q 040623 347 VHQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEF 425 (443)
Q Consensus 347 ~~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~ 425 (443)
||||+ |||+|+|||++|||+| +|+. ++|++|++||.+++++|++|+||++.+.| .+.++|+||
T Consensus 300 ---AGk~i-ANP~A~IlS~amML~~~lg~~-------~~A~~Ie~AV~~~l~~G~~T~Dl~g~~~G-----~~~~~T~e~ 363 (375)
T 3vmk_A 300 ---AGQGI-ANPVAQILSAALLLRHSLKLE-------DAALAIEAAVSKALSDGYLTCELLPASER-----SQAKSTSQM 363 (375)
T ss_dssp ---TTSSC-SCCHHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHTTCCCGGGSCGGGG-----GGCCCHHHH
T ss_pred ---cCCCc-cCcHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHcCCCCchhccCCCC-----CCccCHHHH
Confidence 99999 9999999999999999 8754 59999999999999999999999421112 237999999
Q ss_pred HHHHHHHHH
Q 040623 426 IDAVTETLK 434 (443)
Q Consensus 426 ~daV~~~l~ 434 (443)
+|+|+++|+
T Consensus 364 ~~aV~~~l~ 372 (375)
T 3vmk_A 364 GDYIAQAIA 372 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999985
No 12
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-105 Score=818.74 Aligned_cols=351 Identities=15% Similarity=0.173 Sum_probs=307.0
Q ss_pred ccccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623 35 VANPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV 110 (443)
Q Consensus 35 ~~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~ 110 (443)
+.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.|+
T Consensus 41 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~ 120 (405)
T 3r8w_A 41 KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWD 120 (405)
T ss_dssp CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCcc
Confidence 3468999999999999999999888654 799999999999999999999999999999999999999999999875
Q ss_pred hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCC--CCceeeeecccCCCCCCccEEEecCCceeEEEEeC
Q 040623 111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGW--TKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPD 188 (443)
Q Consensus 111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~--~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~ 188 (443)
+.|. ..++ .+.|+.|||+||||||+||+ +++||+ ++||. ++.++++|+||+|||| ||+|++.
T Consensus 121 ~~~~--~~~p-~~~ll~LRk~ldLyaNlRP~------k~~~gl~~~splk------~~~~~~vD~vIvREnT-eG~Y~G~ 184 (405)
T 3r8w_A 121 NNEK--HLRP-EKGLLQIRAALKVFANLRPA------TVLPQLVDASTLK------REVAEGVDLMVVRELT-GGIYFGE 184 (405)
T ss_dssp TSCG--GGSH-HHHHHHHHHHHTCCEEEEEE------ECCGGGGGGSSBC------HHHHTTCEEEEEEECS-CSTTTCS
T ss_pred CCcc--ccCc-ccchHHHHHHhCCeEEEEEe------eccCCccccCccc------cccCCCceEEEEeeCC-CCeecCC
Confidence 4432 1122 23589999999999999998 788898 58873 2235789999999999 9999964
Q ss_pred CCCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCc
Q 040623 189 GLNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267 (443)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~ 267 (443)
. ++........+++ ++++||++++|||+|+||+||++|++|||+|||+|||+.+ |||+++|+|| +++||
T Consensus 185 e------~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~s-glf~~~~~ev-a~eYP-- 254 (405)
T 3r8w_A 185 P------RGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEAS-ILWRKRVTAL-ASEYP-- 254 (405)
T ss_dssp S------CEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHH-HHHHHHHHHH-GGGST--
T ss_pred c------cccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhccc-cHHHHHHHHH-HhHCC--
Confidence 1 1111100113566 6799999999999999999999988899999999999954 9999999999 89999
Q ss_pred cccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccch
Q 040623 268 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 346 (443)
Q Consensus 268 f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~ 346 (443)
||+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 255 ----dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAPDI-- 327 (405)
T 3r8w_A 255 ----DVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGSAPDI-- 327 (405)
T ss_dssp ----TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCCCGGG--
T ss_pred ----CCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCChhhh--
Confidence 99999999999999999999999 99999999999999999999999999999999886 68999999999998
Q ss_pred hhcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccch--hhhccCCCCCCCCccCHH
Q 040623 347 VHQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDL--ALLIHGPQVARPQYLNTE 423 (443)
Q Consensus 347 ~~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dl--g~~~~G~~~~~~~~~sT~ 423 (443)
||||+ |||+|+|||++|||+| +|+.+ +|++|++||.+++++|++|+|| | | .+.++|+
T Consensus 328 ---AGk~i-ANP~A~IlS~amML~~slg~~~-------~A~~Ie~AV~~~l~~G~~T~Dl~~g----G-----~~~~~T~ 387 (405)
T 3r8w_A 328 ---AGQDK-ANPLATILSAAMLLKYGLGEEK-------AAKRIEDAVLVALNNGFRTGDIYSA----G-----TKLVGCK 387 (405)
T ss_dssp ---TTTTC-CCCHHHHHHHHHHHHHTTCCTT-------HHHHHHHHHHHHHHTTEECGGGCCT----T-----SEECCHH
T ss_pred ---CCCCC-CCcHHHHHHHHHHHHhhCccHH-------HHHHHHHHHHHHHHcCCcCccccCC----C-----CcccCHH
Confidence 99999 9999999999999999 88655 9999999999999999999999 6 6 1239999
Q ss_pred HHHHHHHHHHHHHhh
Q 040623 424 EFIDAVTETLKERMS 438 (443)
Q Consensus 424 e~~daV~~~l~~~~~ 438 (443)
||+|+|+++|++.+.
T Consensus 388 e~~~aV~~~l~~~~~ 402 (405)
T 3r8w_A 388 EMGEEVLKSVDSQVP 402 (405)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999976553
No 13
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=6.8e-105 Score=808.41 Aligned_cols=338 Identities=18% Similarity=0.190 Sum_probs=306.3
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.|..+
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 56999999999999999999988765 79999999999999999999999999999999999999999999987555
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
|+ ..+++++ |+.|||+||||||+||+ +++||+. +||. ++.++++|+||+|||| ||+|++..
T Consensus 84 ~~--~~~~~~~-~l~LR~~ldlyanvRP~------~~~pgl~~~splk------~~~~~~iD~vivREnt-eg~Y~g~e- 146 (359)
T 2y3z_A 84 PR--KIRPETG-LLSLRKSQDLFANLRPA------KVFPGLERLSPLK------EEIARGVDVLIVRELT-GGIYFGEP- 146 (359)
T ss_dssp CG--GGCHHHH-HHHHHHHTTEEEEEEEE------ECCTTCGGGSSSC------HHHHTTCEEEEEEECS-CSTTTCSS-
T ss_pred Cc--ccccchh-HHHHHHHhCCEEEEEEe------eccCCCCCCCCcc------cccCCCceEEEEecCc-cceEecCC-
Confidence 42 2234566 89999999999999997 7778883 7873 1235789999999999 99998531
Q ss_pred CCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 191 NQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
.+. + .+++ ++++||+++++||+|+||+||++|++|||+|||+|||+ ++|+|+++|+|| +++||
T Consensus 147 -----~~~----~-~~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~ev-a~eyp---- 210 (359)
T 2y3z_A 147 -----RGM----S-EAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEV-GRGYP---- 210 (359)
T ss_dssp -----CEE----C-SSCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH-HTTCT----
T ss_pred -----CcC----C-CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHH-HHHCC----
Confidence 111 2 3566 66999999999999999999999977999999999999 999999999999 59999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~ 348 (443)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||||
T Consensus 211 --dI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~--~~fEpvHGSAPdi---- 282 (359)
T 2y3z_A 211 --DVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGT--PVFEPVHGSAPDI---- 282 (359)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSC--CEEEESSCCCGGG----
T ss_pred --cEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCC--ceeecCCCChhhh----
Confidence 99999999999999999999999 99999999999999999999999999999999987 5999999999998
Q ss_pred cCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHH
Q 040623 349 QKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFID 427 (443)
Q Consensus 349 iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 427 (443)
||||+ |||+|+|||++|||+| +|+. ++|++|++||.+++++| +|+||| | ++||+||+|
T Consensus 283 -AGk~i-ANP~A~IlS~ammL~~slg~~-------~~A~~Ie~Av~~~l~~g-~T~Dlg----g-------~~~T~e~~d 341 (359)
T 2y3z_A 283 -AGKGI-ANPTAAILSAAMMLEHAFGLV-------ELARKVEDAVAKALLET-PPPDLG----G-------SAGTEAFTA 341 (359)
T ss_dssp -TTSSC-SCTHHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHHS-CCGGGT----C-------CCCHHHHHH
T ss_pred -CCCCC-cCCHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHcC-CCCccC----C-------CCCHHHHHH
Confidence 99999 9999999999999999 8754 49999999999999999 999998 7 689999999
Q ss_pred HHHHHHHHH
Q 040623 428 AVTETLKER 436 (443)
Q Consensus 428 aV~~~l~~~ 436 (443)
+|+++|++.
T Consensus 342 aV~~~l~~~ 350 (359)
T 2y3z_A 342 TVLRHLAAA 350 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999653
No 14
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=3.9e-104 Score=803.98 Aligned_cols=332 Identities=21% Similarity=0.253 Sum_probs=301.2
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHh-cCeEEEecccCCCcch
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLK-YNVAIKCATITPDEVR 111 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~-~da~LkG~v~tp~~~~ 111 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|++ +|++||||+++|.++.
T Consensus 11 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~~ 90 (366)
T 3ty4_A 11 IVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKV 90 (366)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCCC
Confidence 67999999999999999999998764 789999999999999999999999999999999 6999999999997642
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
. +++|+|+.|||+||||||+||+ +++||+. .+++|+||+|||| |++|++.
T Consensus 91 ~-------~~~s~~l~LRk~ldlyaNvRP~------~~~~g~~-------------~~~vD~vivREnT-eG~Y~g~--- 140 (366)
T 3ty4_A 91 A-------GYSSPIVALRKKMGLYANVRPV------KSLDGAK-------------GKPVDLVIVRENT-ECLYVKE--- 140 (366)
T ss_dssp T-------TCCCHHHHHHHHTTCCEEEEEE------ECCTTCS-------------SSCCEEEEEEECS-CBGGGCC---
T ss_pred c-------ccccchHHHHHHhCCeEEEEEE------eccCCCC-------------CCCCcEEEEeeCC-CCEeecC---
Confidence 1 5788999999999999999997 7777873 1358999999999 9999963
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCccccccchHHHHHHH
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQK-------------KWPLYLSTKNTILKNYDGRFKDIFQ 257 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-------------~~kVt~v~KaNvl~~tdglf~~~~~ 257 (443)
++......+ ++++ ++++||++++|||+|+||+||++| ++|||+|||+|||+.|+|||+++|+
T Consensus 141 ---e~~~~~~~~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 141 ---ERMVQNTPG-KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp ---EEEEECCTT-CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred ---cceeccCCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 221111112 4677 679999999999999999999998 5589999999999999999999999
Q ss_pred HHH--HhhccCccccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEE
Q 040623 258 EVY--EAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 334 (443)
Q Consensus 258 ev~--a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~F 334 (443)
||+ +++|| +|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||
T Consensus 217 ev~~~a~eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~f 288 (366)
T 3ty4_A 217 HAQSLDPSYA------SINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMS 288 (366)
T ss_dssp HHGGGCGGGT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSS--CEEE
T ss_pred HHHHhHhhCC------CceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCC--ceEE
Confidence 996 78999 99999999999999999999999 9999999999999999999999999999999976 4999
Q ss_pred ecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCC
Q 040623 335 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQ 413 (443)
Q Consensus 335 Ep~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~ 413 (443)
||+||||||| |||++ |||+|+|||++|||+|+|+. ++|++|++||.+++++| ++|+||| |
T Consensus 289 EpvHGSAPdI-----aGk~i-ANP~A~IlS~amML~~lg~~-------~~A~~Ie~Av~~~l~~G~~~T~Dlg----g-- 349 (366)
T 3ty4_A 289 EPVHGSAPDI-----AGRGI-ANPVATFRSVALMLEFMGHQ-------DAAADIYTAVDKVLTEGKVLTPDLG----G-- 349 (366)
T ss_dssp CCSSCCCTTT-----TTSSC-CCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHCSSCCGGGT----S--
T ss_pred ecCCCChhhc-----CCCCc-cCcHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHcCCccCcccC----C--
Confidence 9999999998 99999 99999999999999998754 59999999999999999 9999998 7
Q ss_pred CCCCCccCHHHHHHHHHHHHH
Q 040623 414 VARPQYLNTEEFIDAVTETLK 434 (443)
Q Consensus 414 ~~~~~~~sT~e~~daV~~~l~ 434 (443)
.++|+||+|+|+++|+
T Consensus 350 -----~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 350 -----KSGTNEITDAVLANIH 365 (366)
T ss_dssp -----CCCHHHHHHHHHHHC-
T ss_pred -----CcCHHHHHHHHHHHhh
Confidence 8999999999999874
No 15
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=2.5e-104 Score=806.46 Aligned_cols=345 Identities=17% Similarity=0.155 Sum_probs=307.3
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..+
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 57999999999999999999988765 79999999999999999999999999999999999999999999987544
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCCC-CCccEEEecCCceeEEEEeCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQY-RATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~~-~~id~vivrent~e~~y~~~~ 189 (443)
|. ..++++++|++|||+||||||+||+ +++||+. +||.- +.+ +++|+||+|||| |++|++..
T Consensus 85 ~~--~~~~e~~~~l~LR~~ldlyanvRP~------~~~pgl~~~splk~------~~~~~~vDivivREnt-eg~Y~g~~ 149 (363)
T 1cnz_A 85 PP--ESQPERGALLPLRKHFKLFSNLRPA------KLYQGLEAFCPLRA------DIAANGFDILCVRELT-GGIYFGQP 149 (363)
T ss_dssp CG--GGSTTHHHHHHHHHHHTCCEEEEEE------ECCTTCGGGCSBCH------HHHHHCCEEEEEEECS-SGGGTCSS
T ss_pred Cc--ccCcccchHHHHHHHcCCEEEEEEE------EecCCccCCCCCcc------cccCCCCCEEEEeccc-CCeecCCc
Confidence 43 2335667899999999999999998 7788983 78631 113 579999999999 99998641
Q ss_pred CCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 190 LNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
. +.....+ .+++ ++++||+++++||+|+||+||++|++|||+|||+|||+ ++|||+++|+|| +++||
T Consensus 150 ~------~~~~~~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~ev-a~eyp--- 217 (363)
T 1cnz_A 150 K------GREGSGQ-YEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDV-AKTYP--- 217 (363)
T ss_dssp C------EEECCGG-GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH-HTTCT---
T ss_pred C------ccccCCC-CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHH-HHHCC---
Confidence 1 1111111 3566 67999999999999999999999977999999999999 999999999999 69999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~ 347 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||
T Consensus 218 ---dI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPdi--- 290 (363)
T 1cnz_A 218 ---DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAPDI--- 290 (363)
T ss_dssp ---TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCGGG---
T ss_pred ---CceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChhhh---
Confidence 99999999999999999999999 99999999999999999999999999999999987 58999999999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccch-hhhccCCCCCCCCccCHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDL-ALLIHGPQVARPQYLNTEEF 425 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dl-g~~~~G~~~~~~~~~sT~e~ 425 (443)
||||+ |||+|+|||++|||+| ||+ .++|++|++||.+++++|++|+|| | | .+.++|+||
T Consensus 291 --AGk~i-ANP~A~IlS~ammL~~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g----G-----~~~~~T~e~ 351 (363)
T 1cnz_A 291 --AGKNI-ANPIAQILSLALLLRYSLDA-------NDAATAIEQAINRALEEGVRTGDLAR----G-----AAAVSTDEM 351 (363)
T ss_dssp --TTTTC-SCCHHHHHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHTTCCCGGGTT----T-----TTCCCHHHH
T ss_pred --cCCCc-cCcHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHhcCCcCcccCC----C-----CCCCCHHHH
Confidence 99999 9999999999999999 875 459999999999999999999999 5 4 113899999
Q ss_pred HHHHHHHHH
Q 040623 426 IDAVTETLK 434 (443)
Q Consensus 426 ~daV~~~l~ 434 (443)
+|+|+++|+
T Consensus 352 ~daV~~~l~ 360 (363)
T 1cnz_A 352 GDIIARYVA 360 (363)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999996
No 16
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=1.8e-103 Score=792.48 Aligned_cols=327 Identities=20% Similarity=0.204 Sum_probs=305.1
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 46999999999999999999988766 89999999999999999999999999999999999999999999952
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQ 192 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~ 192 (443)
. +|++|||+||||+|+||+ +++||+++| ++++|+||+|||| |++|++.
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~------~~~pg~~~~-----------~~~~D~vivREnt-eg~Y~g~---- 126 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA------KSIPGIDTK-----------YGNVDILIVRENT-EDLYKGF---- 126 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE------ECCTTTCCS-----------CSCCEEEEEEECS-SBTTTCC----
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE------eccCCCCCC-----------CCCCcEEEEecCc-cCeEcCC----
Confidence 1 689999999999999998 788899888 4689999999999 9999853
Q ss_pred cceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccC
Q 040623 193 KTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271 (443)
Q Consensus 193 ~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~ 271 (443)
++.. . ++++ .+++||+++++||+|+||+||++|++|||+|||+|||+.|||+|+++|+||+ ++
T Consensus 127 --~~~~----~-~~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva-~~-------- 190 (336)
T 1wpw_A 127 --EHIV----S-DGVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL-KG-------- 190 (336)
T ss_dssp --EEEE----E-TTEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHH-TT--------
T ss_pred --cccc----C-CCeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHH-Hh--------
Confidence 1111 2 4677 6699999999999999999999997799999999999999999999999994 43
Q ss_pred CeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcC
Q 040623 272 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 350 (443)
Q Consensus 272 ~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iA 350 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+||||||| |
T Consensus 191 ~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApdi-----a 263 (336)
T 1wpw_A 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFDI-----A 263 (336)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTTT-----T
T ss_pred CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchhh-----C
Confidence 79999999999999999999999 99999999999999999999999999999999986 8999999999998 9
Q ss_pred CCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHH
Q 040623 351 GGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAV 429 (443)
Q Consensus 351 Gk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 429 (443)
||++ |||+|+|||++|||+|+|++++|+++.++|++|++||.+++++| ++|+||| | +++|+||+|+|
T Consensus 264 Gk~i-ANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~Dlg----G-------~~~T~e~~dav 331 (336)
T 1wpw_A 264 GKNI-GNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG----G-------NATTDDLINEI 331 (336)
T ss_dssp TSSC-CCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT----C-------CCCHHHHHHHH
T ss_pred CCCC-cCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccC----C-------CCCHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999 7999998 7 78999999999
Q ss_pred HHHH
Q 040623 430 TETL 433 (443)
Q Consensus 430 ~~~l 433 (443)
+++|
T Consensus 332 ~~~l 335 (336)
T 1wpw_A 332 YNKL 335 (336)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9875
No 17
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=1.9e-103 Score=796.59 Aligned_cols=330 Identities=23% Similarity=0.242 Sum_probs=303.3
Q ss_pred cccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 32 ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
|+...++|++||||||||||+++++++|.+.+++|+|+++++|+++ +++|+++|++++++|+++|++||||+++|.+.
T Consensus 17 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~- 94 (354)
T 3blx_B 17 PSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIGK- 94 (354)
T ss_dssp TTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC----
T ss_pred hcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCCc-
Confidence 4444578999999999999999999999999999999999999999 99999999999999999999999999999642
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
+++|+|++|||+||||+|+||+ +++||+++| ++++|+||+|||| |++|++.
T Consensus 95 --------~~~s~~l~lR~~ldlyan~RP~------~~~pg~~s~-----------~~~vD~vivREnt-eg~Y~g~--- 145 (354)
T 3blx_B 95 --------GHRSLNLTLRKTFGLFANVRPA------KSIEGFKTT-----------YENVDLVLIRENT-EGEYSGI--- 145 (354)
T ss_dssp ---------CCCHHHHHHHHHTEEEEEEEE------ECCTTCCCS-----------SCSCEEEEEEECS-SEEEEEE---
T ss_pred --------cccCchHHHHHHcCCEEEEEEe------cccCCCCCC-----------CCCccEEEEecCc-CCcccCC---
Confidence 4788999999999999999997 778899888 3689999999999 9999963
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
++. .. .+++ ++++||+++++||+|+||+||++|+ +|||+|||+|||+.|||+|+++|+|| +++||
T Consensus 146 ---e~~----~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~ev-a~eyp---- 212 (354)
T 3blx_B 146 ---EHI----VC-PGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKEL-SKEYP---- 212 (354)
T ss_dssp ---EEE----CS-TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHH-GGGCT----
T ss_pred ---ccc----cc-CCEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHH-HHHCC----
Confidence 111 12 4577 6799999999999999999999994 58999999999999999999999999 68999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce---EEEecCCcccchhhhhhhh-cCCcccccceeeCCCCceEEEecccccccccc
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY---VWACKNYDGDVQSDFLAQG-FGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHY 345 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F---Viv~~NlfGDIlSDlaA~l-~GglGlapSanig~~~~~a~FEp~HGSApdi~ 345 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|++ +||+||+||+|+|+++ +||||+|||||||
T Consensus 213 --dI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPdi- 287 (354)
T 3blx_B 213 --DLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPDI- 287 (354)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGGG-
T ss_pred --CceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhhh-
Confidence 99999999999999999999999 9999999999999999999 9999999999999986 8999999999998
Q ss_pred hhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC--CcccchhhhccCCCCCCCCccCHH
Q 040623 346 RVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG--KMTKDLALLIHGPQVARPQYLNTE 423 (443)
Q Consensus 346 ~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G--~~T~Dlg~~~~G~~~~~~~~~sT~ 423 (443)
||||+ |||+|+|||++|||+|+|+. ++|++|++||.+++++| ++|+||| | .++|+
T Consensus 288 ----AGk~i-ANP~A~IlS~ammL~~lg~~-------~~A~~Ie~Av~~~l~~g~~~~T~Dlg----G-------~~~T~ 344 (354)
T 3blx_B 288 ----AGQDK-ANPTALLLSSVMMLNHMGLT-------NHADQIQNAVLSTIASGPENRTGDLA----G-------TATTS 344 (354)
T ss_dssp ----TTTTC-CCTHHHHHHHHHHHHHHTCH-------HHHHHHHHTHHHHHTSSTTSSCGGGT----C-------CCCHH
T ss_pred ----cCCCc-cCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHcCCCccCCCcC----C-------CCCHH
Confidence 99999 99999999999999998754 49999999999999999 8999998 7 78999
Q ss_pred HHHHHHHHHH
Q 040623 424 EFIDAVTETL 433 (443)
Q Consensus 424 e~~daV~~~l 433 (443)
||+|+|+++|
T Consensus 345 e~~dav~~~l 354 (354)
T 3blx_B 345 SFTEAVIKRL 354 (354)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhC
Confidence 9999999864
No 18
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.2e-103 Score=800.45 Aligned_cols=341 Identities=19% Similarity=0.159 Sum_probs=302.6
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
.+|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..+
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 58999999999999999999998876 89999999999999999999999999999999999999999999976433
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCCC-CCccEEEecCCceeEEEEeCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQY-RATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~~-~~id~vivrent~e~~y~~~~ 189 (443)
|. ..++++++|++|||+||||||+||+ +++||++ +|+.- +.. +++|+||+|||| ||+|++.
T Consensus 93 ~~--~~r~~~~~~l~LRk~ldlyaN~RP~------~~~pgl~~~splk~------~~~~~~vDivIvREnt-eG~Y~g~- 156 (366)
T 1vlc_A 93 PP--EKRPEIGGLLALRKMLNLYANIRPI------KVYRSLVHVSPLKE------KVIGSGVDLVTVRELS-YGVYYGQ- 156 (366)
T ss_dssp CS--TTSHHHHTHHHHHHHTTCCEEEEEE------ECCGGGGGGSSSCH------HHHTTCCEEEEEEECS-SGGGTEE-
T ss_pred Cc--ccCcccchhHHHHHHhCCEEEEEEc------cccCCCCCcCCCcc------cccCCCceEEEEEeCC-CCeecCC-
Confidence 31 1112233589999999999999998 7788986 67510 001 479999999999 9999853
Q ss_pred CCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcc
Q 040623 190 LNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKF 268 (443)
Q Consensus 190 g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f 268 (443)
++ ..+ .+++ ++++||+++++||+|+||+||++|++|||+|||+|||+ |||||+++|+|| +++||
T Consensus 157 -----~~----~~~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~ev-a~eyp--- 221 (366)
T 1vlc_A 157 -----PR----GLD-EEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEV-AREYP--- 221 (366)
T ss_dssp -----EE----EEC-SSCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH-HTTCT---
T ss_pred -----cc----ccC-CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHH-HHHCC---
Confidence 11 112 3566 67999999999999999999999977999999999999 999999999999 68999
Q ss_pred ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh
Q 040623 269 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 347 (443)
Q Consensus 269 ~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~ 347 (443)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+| +. +||||+|||||||
T Consensus 222 ---dV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~~--alfEpvHGSAPdI--- 292 (366)
T 1vlc_A 222 ---DVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DK--NLYEPAGGSAPDI--- 292 (366)
T ss_dssp ---TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SS--EEEEESSCCCTTT---
T ss_pred ---CceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-Cc--eeeecCCCchhhc---
Confidence 99999999999999999999999 99999999999999999999999999999999 64 9999999999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCc-cCHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQY-LNTEEF 425 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~-~sT~e~ 425 (443)
||||+ |||+|+|||++|||+| ||+. ++|++|++||.+++++|++|+|||.. | ++ +||+||
T Consensus 293 --AGk~i-ANP~A~IlS~ammL~~slg~~-------~~A~~Ie~Av~~~l~~g~~T~Dlg~~--g------g~~~~T~e~ 354 (366)
T 1vlc_A 293 --AGKNI-ANPIAQILSLAMMLEHSFGMV-------EEARKIERAVELVIEEGYRTRDIAED--P------EKAVSTSQM 354 (366)
T ss_dssp --TTTTC-SCCHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHTTCCCGGGCSS--G------GGCCCHHHH
T ss_pred --CCCCc-cCcHHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHcCCcccccccC--C------CCCcCHHHH
Confidence 99999 9999999999999999 8754 59999999999999999999999721 1 15 899999
Q ss_pred HHHHHHHHHH
Q 040623 426 IDAVTETLKE 435 (443)
Q Consensus 426 ~daV~~~l~~ 435 (443)
+|+|+++|+.
T Consensus 355 ~daV~~~l~~ 364 (366)
T 1vlc_A 355 GDLICKKLEE 364 (366)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999953
No 19
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=3.2e-103 Score=812.29 Aligned_cols=354 Identities=19% Similarity=0.183 Sum_probs=305.2
Q ss_pred cccEEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCC--cccHHHHHHHHhcCeEEEecccC
Q 040623 36 ANPIVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDD--QVTIQSAQATLKYNVAIKCATIT 106 (443)
Q Consensus 36 ~~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~etl~~~k~~da~LkG~v~t 106 (443)
+++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+ +||++|+++|+++|++||||++|
T Consensus 36 ~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~t 115 (427)
T 3dms_A 36 QPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTT 115 (427)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCC
T ss_pred CCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCCC
Confidence 467999999999999999999888753 389999999999999999999 99999999999999999999999
Q ss_pred CCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEE
Q 040623 107 PDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFV 186 (443)
Q Consensus 107 p~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~ 186 (443)
|.+. +++|+|++|||+||||||+||+ +++||+++|+.- .+++|+||+|||| ||+|+
T Consensus 116 P~~~---------~~~s~~l~LRk~LdLyaNlRPv------~~~pg~~splk~--------~~~vDivIvREnT-eG~Y~ 171 (427)
T 3dms_A 116 PVGG---------GIRSLNVALRQELDLYVCLRPI------QYFKGVPSPVRE--------PEKTNMVIFRENS-EDIYA 171 (427)
T ss_dssp CC-------------CCHHHHHHHHTTCCEEEEEE------CCCTTCCCSSSC--------GGGCCEEEEEECS-SGGGG
T ss_pred CCCc---------ccCChhHHHHHHhCCeEEEEEe------ecCCCCCCCCCC--------CCCceEEEEEECC-CCEec
Confidence 9753 4678999999999999999998 888899999731 2589999999999 99999
Q ss_pred eCCCC-Ccc-----------eeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchHH
Q 040623 187 PDGLN-QKT-----------EWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYDGRF 252 (443)
Q Consensus 187 ~~~g~-~~~-----------~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~tdglf 252 (443)
+.... +.- +.+......+.+++ .+++||+++++||+|+||+||++|++ |||+|||+|||+.|||||
T Consensus 172 G~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglf 251 (427)
T 3dms_A 172 GIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAF 251 (427)
T ss_dssp CCEECTTCHHHHHHHHHHHHTSCCCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHH
T ss_pred CcccccCCcccccccccccccccccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHH
Confidence 64100 000 00000000013456 45999999999999999999999965 899999999999999999
Q ss_pred HHHHHHHHHhhccCc-------------cccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcc
Q 040623 253 KDIFQEVYEAQWKSK-------------FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLG 318 (443)
Q Consensus 253 ~~~~~ev~a~eyp~~-------------f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglG 318 (443)
+++|+||++++||+. ++..+|+++++|||++|||||++|++| ||||+|||||||||++|+++||||
T Consensus 252 r~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslG 331 (427)
T 3dms_A 252 RDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIG 331 (427)
T ss_dssp HHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcc
Confidence 999999965589951 344579999999999999999999999 999999999999999999999999
Q ss_pred cccceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhc
Q 040623 319 LMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVES 398 (443)
Q Consensus 319 lapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~ 398 (443)
|+||+|+|+++ +||||+||||||| ||||+ |||+|+|||++|||+|+|+. ++|++|++||.+++++
T Consensus 332 l~pSanig~~~--a~fEpvHGSAPdI-----AGk~i-ANP~A~IlS~amML~~lg~~-------~~A~~Ie~AV~~vl~~ 396 (427)
T 3dms_A 332 IAPGANLSDSV--AMFEATHGTAPKY-----AGKDY-VNPGSEILSAEMMLRHLGWT-------EAADVIISAMEKSIKQ 396 (427)
T ss_dssp TCEEEEECSSC--EEEEECSCCCGGG-----TTSSC-SCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHH
T ss_pred ccceeeeCCCc--ceEEeccCChhhh-----cCCCc-CCcHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHc
Confidence 99999999875 9999999999998 99999 99999999999999998754 4999999999999999
Q ss_pred CCcccchhhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 399 GKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 399 G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
|++|+|||+...| .+.++|+||+|+|+++|
T Consensus 397 G~~T~Dlgg~~~g-----~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 397 KRVTYDFARLMEG-----ATQVSCSGFGQVLIENM 426 (427)
T ss_dssp TEECHHHHTTSSS-----CEECCHHHHHHHHHHTT
T ss_pred CCcchhhccccCC-----CCccCHHHHHHHHHHhh
Confidence 9999999843223 34799999999999876
No 20
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.4e-103 Score=800.19 Aligned_cols=344 Identities=20% Similarity=0.231 Sum_probs=304.0
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRV 112 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~ 112 (443)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|.|..+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 46999999999999999999988765 79999999999999999999999999999999999999999999987544
Q ss_pred hhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCC--CceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623 113 KEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWT--KPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL 190 (443)
Q Consensus 113 ~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~--~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g 190 (443)
|. ..+++++ |+.|||+||||||+||+ +++||+. +|+.- +.++++|+||+|||| |++|++..+
T Consensus 82 ~~--~~~~e~~-ll~lRk~ldlyanvRP~------~~~pgl~~~splk~------~~~~~vDivIvREnt-eg~Y~g~~~ 145 (358)
T 1a05_A 82 PP--AKRPEQG-LLRLRKGLDLYANLRPA------QIFPQLLDASPLRP------ELVRDVDILVVRELT-GDIYFGQPR 145 (358)
T ss_dssp CG--GGSHHHH-HHHHHHHHTCCEEEEEE------ECCTTSGGGCSBCH------HHHTTCEEEEEEECS-SSTTTCSSC
T ss_pred Cc--cccchhh-HHHHHHHcCCEEEEEEE------EecCCccCCCCCcc------ccCCCceEEEEEecC-CCcccCCcC
Confidence 42 2223455 89999999999999998 7788983 78631 124679999999999 999986411
Q ss_pred CCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 191 NQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 191 ~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
+.....+ .+++ ++++||+++++||+|+||+||++|++|||+|||+|||+ ++|+|+++|+|| +++||
T Consensus 146 ------~~~~~~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~ev-a~eyp---- 212 (358)
T 1a05_A 146 ------GLEVIDG-KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEV-ARDYP---- 212 (358)
T ss_dssp ------EEEEETT-EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH-GGGCT----
T ss_pred ------ccccCCC-CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHH-HHHCC----
Confidence 1111112 3466 67999999999999999999999977999999999999 899999999999 69999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 348 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~ 348 (443)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+| ++ ++||||+|||||||
T Consensus 213 --dI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPdi---- 284 (358)
T 1a05_A 213 --DVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPDI---- 284 (358)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGGG----
T ss_pred --CceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhHh----
Confidence 99999999999999999999999 99999999999999999999999999999999 54 59999999999998
Q ss_pred cCCCCcccChhhHHHHHHHHHHh-hcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCc-cCHHHHH
Q 040623 349 QKGGETSTNSIASIFAWSQGLAH-RAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQY-LNTEEFI 426 (443)
Q Consensus 349 iAGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~-~sT~e~~ 426 (443)
|||++ |||+|+|||++|||+| ||+ .++|++|++||.+++++|++|+||++. | .+ ++|+||+
T Consensus 285 -AGk~i-ANP~A~IlS~ammL~~~lg~-------~~~A~~Ie~Av~~~l~~g~~T~Dl~g~--g------~~~~~T~e~~ 347 (358)
T 1a05_A 285 -AGQDK-ANPLATILSVAMMLRHSLNA-------EPWAQRVEAAVQRVLDQGLRTADIAAP--G------TPVIGTKAMG 347 (358)
T ss_dssp -TTTTC-SCCHHHHHHHHHHHHHTSSC-------HHHHHHHHHHHHHHHHTTCCCGGGCCT--T------SCCCCHHHHH
T ss_pred -cCCCc-cCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCcccccC--C------CCCcCHHHHH
Confidence 99999 9999999999999999 874 459999999999999999999999621 2 14 8999999
Q ss_pred HHHHHHHH
Q 040623 427 DAVTETLK 434 (443)
Q Consensus 427 daV~~~l~ 434 (443)
|+|+++|+
T Consensus 348 daV~~~l~ 355 (358)
T 1a05_A 348 AAVVNALN 355 (358)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhh
Confidence 99999984
No 21
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=9.5e-103 Score=790.15 Aligned_cols=330 Identities=17% Similarity=0.177 Sum_probs=300.6
Q ss_pred cccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcch
Q 040623 32 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVR 111 (443)
Q Consensus 32 ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~ 111 (443)
|+...++|++||||||||||+++++++|.+.+++|+|+++++|+ ++|+++|++++++|+++|++||||+++|..
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-- 86 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-- 86 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH--
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC--
Confidence 44445789999999999999999999999889999999999997 899999999999999999999999999831
Q ss_pred hhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCC
Q 040623 112 VKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLN 191 (443)
Q Consensus 112 ~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~ 191 (443)
+ ++++|+|++|||+||||+|+||+ +++||+++| ++++|+||+|||| |++|++.
T Consensus 87 -~-----~~~~s~~l~lR~~ldlyan~RP~------~~~pg~~~~-----------~~~vD~vivREnt-eg~Y~g~--- 139 (349)
T 3blx_A 87 -Q-----TGHGSLNVALRKQLDIYANVALF------KSLKGVKTR-----------IPDIDLIVIRENT-EGEFSGL--- 139 (349)
T ss_dssp -H-----HTCHHHHHHHHHTSCEEEEEEEE------ECCTTCCCS-----------SCSCEEEEEEECS-SGGGGCE---
T ss_pred -C-----CCccCchHHHHHHcCCEEEEEEE------eccCCCCCC-----------CCCcCEEEEecCC-CCcEeCC---
Confidence 1 15678999999999999999998 778899887 3689999999999 9999852
Q ss_pred CcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHhhccCccc
Q 040623 192 QKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269 (443)
Q Consensus 192 ~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~ 269 (443)
++ ... .+++ ++++||+++++||+|+||+||++|+ +|||+|||+|||+.|||+|+++|+||++++||
T Consensus 140 ---e~----~~~-~gva~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp---- 207 (349)
T 3blx_A 140 ---EH----ESV-PGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP---- 207 (349)
T ss_dssp ---EE----ECS-TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCT----
T ss_pred ---ce----ecc-CCeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCC----
Confidence 11 112 4567 5799999999999999999999994 48999999999999999999999999448999
Q ss_pred cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEeccc-ccccccchh
Q 040623 270 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRV 347 (443)
Q Consensus 270 ~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~H-GSApdi~~~ 347 (443)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+| ||||||
T Consensus 208 --~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPdi--- 280 (349)
T 3blx_A 208 --DIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLDI--- 280 (349)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC-----
T ss_pred --CeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhhh---
Confidence 99999999999999999999999 99999999999999999999999999999999986 8999999 999998
Q ss_pred hcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHH
Q 040623 348 HQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFI 426 (443)
Q Consensus 348 ~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 426 (443)
||||+ |||+|+|||++|||+|+|+.+ +|++|++||.+++++| ++|+||| | .++|+||+
T Consensus 281 --AGk~i-ANP~A~IlS~ammL~~lg~~~-------~A~~Ie~Av~~~l~~G~~~T~Dlg----g-------~~~T~e~~ 339 (349)
T 3blx_A 281 --KGQNV-ANPTAMILSSTLMLNHLGLNE-------YATRISKAVHETIAEGKHTTRDIG----G-------SSSTTDFT 339 (349)
T ss_dssp --CCTTC-SCCHHHHHHHHHHHHHHTCCH-------HHHHHHHHHHHHHHSSSSCBGGGT----C-------CBCHHHHH
T ss_pred --cCCCC-CCcHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHHHHHcCCccCCCcC----C-------CCCHHHHH
Confidence 99999 999999999999999998644 9999999999999999 8999998 7 78999999
Q ss_pred HHHHHHHH
Q 040623 427 DAVTETLK 434 (443)
Q Consensus 427 daV~~~l~ 434 (443)
|+|+++|+
T Consensus 340 daI~~~l~ 347 (349)
T 3blx_A 340 NEIINKLS 347 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999995
No 22
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.4e-102 Score=802.65 Aligned_cols=355 Identities=22% Similarity=0.202 Sum_probs=310.4
Q ss_pred cccccc--ccEEEECCCcchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecc
Q 040623 31 QKIKVA--NPIVEMDGDEMTRVIWKLIKDKLINP----FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCAT 104 (443)
Q Consensus 31 ~ki~~~--~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v 104 (443)
+|+++. ++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 455552 46999999999999999999988766 899999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEE
Q 040623 105 ITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLV 184 (443)
Q Consensus 105 ~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~ 184 (443)
+||.+. +++|+|++|||+||||||+||+ +++||+++|+. + ..++|+||+|||| |++
T Consensus 100 ~tP~~~---------~~~s~~l~LR~~Ldlyan~RPv------~~~~g~~splk---~-----~~~vDivIvREnT-eg~ 155 (412)
T 2iv0_A 100 TTPVGG---------GYRSLNVTIRQVLDLYANVRPV------YYLKGVPSPIK---H-----PEKVNFVIFRENT-EDV 155 (412)
T ss_dssp CCCSSS---------SSSHHHHHHHHHTTCCEEEEEE------ECCTTSCCSBS---C-----GGGCEEEEEEECS-SSG
T ss_pred cCCCCc---------cccChhHHHHHHcCCeEEEEEE------EecCCCCCCCC---C-----cCCCCEEEEecCC-CCE
Confidence 999642 5788999999999999999998 88889999862 1 2479999999999 999
Q ss_pred EEeCCCCCcceeeeee-------------ecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccc
Q 040623 185 FVPDGLNQKTEWEVYS-------------FTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYD 249 (443)
Q Consensus 185 y~~~~g~~~~~~~~~~-------------~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~td 249 (443)
|++... ..+... .....+++ .+++||+++++||+|+||+||++|++ |||+|||+|||+.|+
T Consensus 156 Y~G~e~----~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~ 231 (412)
T 2iv0_A 156 YAGIEW----PRGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTE 231 (412)
T ss_dssp GGCCEE----CTTCHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTH
T ss_pred eCCccc----ccCCccccchhhcccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhh
Confidence 986411 000000 00013566 66999999999999999999999966 799999999999999
Q ss_pred hHHHHHHHHHHHhhccCcc--------------ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhc
Q 040623 250 GRFKDIFQEVYEAQWKSKF--------------EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGF 314 (443)
Q Consensus 250 glf~~~~~ev~a~eyp~~f--------------~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~ 314 (443)
|+|+++|+||++++||++| +..+|+++|+|||++|||||++|++| ||||+|||||||||++|+++
T Consensus 232 Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~ 311 (412)
T 2iv0_A 232 GAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALI 311 (412)
T ss_dssp HHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhc
Confidence 9999999999545999654 22349999999999999999999999 99999999999999999999
Q ss_pred CCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHH
Q 040623 315 GSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIA 394 (443)
Q Consensus 315 GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~ 394 (443)
||+||+||+|+|+. ++||||+||||||| ||||+ |||+|+|||++|||+|+|+. ++|++|++||.+
T Consensus 312 GslGlapsanig~~--~a~fEp~HGSAPdi-----AGk~i-ANP~A~IlS~amML~~lg~~-------~~A~~Ie~Av~~ 376 (412)
T 2iv0_A 312 GGLGIAPGSNIGDG--IGVFEPVHGSAPKY-----AGQNK-VNPTAEILTGALMFEYIGWK-------DASEMIKKAVEM 376 (412)
T ss_dssp TCGGGCEEEEEETT--EEEEEESSCCCSTT-----TTSSC-SCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CCccccceEEECCC--ceEEeCCCCChhhc-----CCCcc-cCcHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHH
Confidence 99999999999975 58999999999998 99999 99999999999999999864 499999999999
Q ss_pred HHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHHHH
Q 040623 395 TVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434 (443)
Q Consensus 395 ~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~ 434 (443)
++++|++|+|||.+. | .+.++|+||+|+|+++|+
T Consensus 377 ~l~~g~~T~Dl~~~~-G-----~~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 377 TISSGIVTYDIHRHM-G-----GTKVGTREFAEAVVENLQ 410 (412)
T ss_dssp HHHTTEECHHHHHHH-C-----SEECCHHHHHHHHHHHHH
T ss_pred HHHcCCccccccccc-C-----CCCcCHHHHHHHHHHHHh
Confidence 999999999997322 2 136899999999999995
No 23
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=4.7e-102 Score=800.36 Aligned_cols=355 Identities=20% Similarity=0.237 Sum_probs=304.5
Q ss_pred cccccc--ccEEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEE
Q 040623 31 QKIKVA--NPIVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIK 101 (443)
Q Consensus 31 ~ki~~~--~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 101 (443)
+|+.+. ++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|+++|++||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 455552 46999999999999999999988654 389999999999999999999999999999999999999
Q ss_pred ecccCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCce
Q 040623 102 CATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKL 181 (443)
Q Consensus 102 G~v~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~ 181 (443)
||++||... +++|+|++|||+||||||+||+ +++||+++|+. + ..++|+||+||||
T Consensus 97 Gav~tP~~~---------~~~s~~l~LR~~LdlyanvRPv------~~~~g~~splk---~-----~~~vDivIvREnt- 152 (409)
T 2e0c_A 97 GPLETPIGK---------GWKSVNVAIRLMLDLYANIRPV------KYIEGLESPLK---H-----PEKVDMIIFRENT- 152 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEE------ECCTTCCCSBS---C-----CTTCEEEEEEECS-
T ss_pred CCccCCCcc---------cccChhHHHHHHcCCEEEEEEE------eccCCCCCCCC---C-----ccCCcEEEEEcCC-
Confidence 999999532 4789999999999999999998 78889999862 1 2479999999999
Q ss_pred eEEEEeCCCCCcceeeee------e-------ecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCcccc
Q 040623 182 KLVFVPDGLNQKTEWEVY------S-------FTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILK 246 (443)
Q Consensus 182 e~~y~~~~g~~~~~~~~~------~-------~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~ 246 (443)
|++|++... +.+.. . .....+++ .+++||+++++||+|+||+||++|++ |||+|||+|||+
T Consensus 153 eg~Y~g~e~----~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk 228 (409)
T 2e0c_A 153 DDLYRGIEY----PFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMK 228 (409)
T ss_dssp SGGGGCCEE----CTTSHHHHHHHHHHHHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTST
T ss_pred CCEeCCccc----ccCCCcccchhhccchhccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchh
Confidence 999986411 00000 0 00013566 66999999999999999999999966 699999999999
Q ss_pred ccchHHHHHHHHHHHhhccCcc-----------ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhc
Q 040623 247 NYDGRFKDIFQEVYEAQWKSKF-----------EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGF 314 (443)
Q Consensus 247 ~tdglf~~~~~ev~a~eyp~~f-----------~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~ 314 (443)
.|+|+|+++|+||++++||++| ++.+|+++|+|||++|||||++|++| ||||+|||||||||++|+++
T Consensus 229 ~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~ 308 (409)
T 2e0c_A 229 YTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALI 308 (409)
T ss_dssp TTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhc
Confidence 9999999999999544999644 22349999999999999999999999 99999999999999999999
Q ss_pred CCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHH
Q 040623 315 GSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIA 394 (443)
Q Consensus 315 GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~ 394 (443)
||+||+||+|+|++ ++||||+||||||| ||||+ |||+|+|||++|||+|+|+. ++|++|++||.+
T Consensus 309 GslGl~pSanig~~--~a~fEp~HGSAPdi-----AGk~i-ANP~A~IlS~ammL~~lg~~-------~~A~~Ie~Av~~ 373 (409)
T 2e0c_A 309 GNIGMLGGANIGDE--GGMFEAIHGTAPKY-----AGKNV-ANPTGIIKAGELMLRWMGWN-------EAADLIEKAINM 373 (409)
T ss_dssp SCGGGCEEEEEETT--EEEEEESSCCCGGG-----TTTTC-SCTHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred CCcccCceEEECCC--ceEEecCCCChhhh-----cCCcc-cCcHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHH
Confidence 99999999999976 48999999999998 99999 99999999999999999864 499999999999
Q ss_pred HHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHHHH
Q 040623 395 TVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434 (443)
Q Consensus 395 ~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~ 434 (443)
++++|++|+|||++. | .+.++|+||+|+|+++|+
T Consensus 374 ~l~~g~~T~Dl~g~~-g-----~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 374 AIRDKKVTQDIARFM-G-----VKALGTKEYADELIKIMD 407 (409)
T ss_dssp HHHTTCCCHHHHHHH-T-----SCCCCHHHHHHHHHHHHT
T ss_pred HHHcCCccccccccC-C-----CCCcCHHHHHHHHHHHHh
Confidence 999999999997432 2 136899999999999994
No 24
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-101 Score=806.78 Aligned_cols=341 Identities=21% Similarity=0.209 Sum_probs=310.8
Q ss_pred ccccccc----ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccC-CcccHHHHHHHHhcCeEEEecc
Q 040623 30 FQKIKVA----NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATD-DQVTIQSAQATLKYNVAIKCAT 104 (443)
Q Consensus 30 ~~ki~~~----~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~etl~~~k~~da~LkG~v 104 (443)
.+||.|. ++|++||||||||||++++++++.+.+++|+|+++++|+++++++| +++|++++++|+++|++||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 3555554 7899999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEE
Q 040623 105 ITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLV 184 (443)
Q Consensus 105 ~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~ 184 (443)
++|.+. +++|+|++||++||||||+||+ +++||+++|+. .+++|+||+|||| ||+
T Consensus 89 gtP~~~---------~~~s~~l~LRk~LdLyaNlRP~------k~~pgl~splk---------~~~vD~vIVREnT-EG~ 143 (496)
T 2d1c_A 89 ETPVGY---------GEKSANVTLRKLFETYANVRPV------REFPNVPTPYA---------GRGIDLVVVRENV-EDL 143 (496)
T ss_dssp CCCSSS---------SSCCHHHHHHHHTTCCEEEEEE------ECBTTBCCTTT---------TSCCEEEEEEECS-SBG
T ss_pred cCCCcc---------cccChHHHHHHHhCCEEEEEEE------eecCCCCcccc---------CCCccEEEEeeCc-Cce
Confidence 999642 5789999999999999999997 77789988741 1589999999999 999
Q ss_pred EEeCCCCCcceeeeeeecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHHHHHHHHHh
Q 040623 185 FVPDGLNQKTEWEVYSFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNTILKNYDGRFKDIFQEVYEA 262 (443)
Q Consensus 185 y~~~~g~~~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvl~~tdglf~~~~~ev~a~ 262 (443)
|++. ++.. + ++++ .+++||+++++||+|+||+||++|+ +|||+|||+|||+.|+|+|+++|+|| ++
T Consensus 144 Y~G~------e~~~----~-~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eV-a~ 211 (496)
T 2d1c_A 144 YAGI------EHMQ----T-PSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQV-AQ 211 (496)
T ss_dssp GGCC------EEEE----E-TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHH-HT
T ss_pred Eece------eEec----C-CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHH-HH
Confidence 9853 2111 2 4677 5699999999999999999999994 58999999999999999999999999 78
Q ss_pred hccCccccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccc
Q 040623 263 QWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 341 (443)
Q Consensus 263 eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSA 341 (443)
+|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+||||
T Consensus 212 eYP------dI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHGSA 283 (496)
T 2d1c_A 212 EYP------DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHGSA 283 (496)
T ss_dssp TCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSCCC
T ss_pred HCC------CceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCCch
Confidence 999 99999999999999999999999 99999999999999999999999999999999986 8999999999
Q ss_pred cccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC-CcccchhhhccCCCCCCCCcc
Q 040623 342 TRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG-KMTKDLALLIHGPQVARPQYL 420 (443)
Q Consensus 342 pdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~ 420 (443)
||| |||++ |||+|+|||++|||+|+|+. ++|++|++||.+++++| ++|+||| |. .+.+
T Consensus 284 PDI-----AGk~i-ANP~A~IlSaamML~hlG~~-------~~A~~Ie~AV~~vl~~G~~~T~DLg----g~----~~~~ 342 (496)
T 2d1c_A 284 PKY-----AGKNV-INPTAVLLSAVMMLRYLEEF-------ATADLIENALLYTLEEGRVLTGDVV----GY----DRGA 342 (496)
T ss_dssp TTT-----TTSSC-CCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHTSSCBHHHH----CT----TTCB
T ss_pred hhh-----cCCCc-cCcHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHcCCeeccccC----CC----CCCc
Confidence 998 99999 99999999999999998864 49999999999999999 8999998 40 1258
Q ss_pred CHHHHHHHHHHHHHHH
Q 040623 421 NTEEFIDAVTETLKER 436 (443)
Q Consensus 421 sT~e~~daV~~~l~~~ 436 (443)
+|+||+|+|+++|++.
T Consensus 343 sT~e~~daV~~~L~~~ 358 (496)
T 2d1c_A 343 KTTEYTEAIIQNLGKT 358 (496)
T ss_dssp CHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999999999543
No 25
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=8.2e-102 Score=781.19 Aligned_cols=332 Identities=18% Similarity=0.190 Sum_probs=296.1
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcchhhhhh
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFN 116 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~~~~~~~ 116 (443)
++|++||||||||||+++++++|.+...+|+|+++++|+++++++|+++|++++++|+++|++||||+++|..+.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~----- 76 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS----- 76 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT-----
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 469999999999999999999988665579999999999999999999999999999999999999999996331
Q ss_pred hhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCCCCccee
Q 040623 117 LKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEW 196 (443)
Q Consensus 117 ~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g~~~~~~ 196 (443)
. ..++|+|++|||+||||||+||+ +++||+++|+. . ..+ +|+||+|||| |++|++. ++
T Consensus 77 ~-~~~~s~~l~lR~~ldlyan~RP~------~~~pg~~s~l~------~-~~~-~DivivREnt-eg~Y~g~------e~ 134 (337)
T 1w0d_A 77 G-VLERGLLLRLRFELDHHINLRPA------RLYPGVASPLS------G-NPG-IDFVVVREGT-EGPYTGN------GG 134 (337)
T ss_dssp T-HHHHHTHHHHHHHTTCCEEEEEE------ECCTTCCCSBT------T-CCC-CEEEEEEECS-CSGGGCC------EE
T ss_pred c-ccccchHHHHHHHcCCEEEEEEe------ecCCCCCCccc------C-CCC-CcEEEEecCC-CCeecCC------cc
Confidence 0 13568899999999999999998 77889988861 0 112 9999999999 9999853 11
Q ss_pred eeeeecC-CcceE-EEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCccccCCeE
Q 040623 197 EVYSFTG-AGGVA-LSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIW 274 (443)
Q Consensus 197 ~~~~~~~-~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~ 274 (443)
.. ..+ ..+++ ++++||+++++||+|+||+||++|++|||+|||+|||+.|||+|+++|+|| +++|| +|+
T Consensus 135 ~~--~~g~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~ev-a~eyp------~i~ 205 (337)
T 1w0d_A 135 AI--RVGTPNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEV-GECYP------DVE 205 (337)
T ss_dssp EE--STTSTTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHH-HTTCT------TSE
T ss_pred ee--cCCCCCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHH-HHHCC------ceE
Confidence 11 112 24577 679999999999999999999999779999999999999999999999999 68999 999
Q ss_pred EeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCc-eEEEecccccccccchhhcCCC
Q 040623 275 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGG 352 (443)
Q Consensus 275 ~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~-~a~FEp~HGSApdi~~~~iAGk 352 (443)
++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+||||||| |||
T Consensus 206 ~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPdi-----AGk 280 (337)
T 1w0d_A 206 VAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDI-----AGQ 280 (337)
T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGG-----TTS
T ss_pred EEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhhh-----CCC
Confidence 99999999999999999999 999999999999999999999999999999998652 58999999999998 999
Q ss_pred CcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHH
Q 040623 353 ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTET 432 (443)
Q Consensus 353 ~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 432 (443)
|+ |||+|+|||++|||+|+|+. ++|++|++||.+++++| | | .++||+||+|+|+++
T Consensus 281 ~i-ANP~A~IlS~ammL~~lg~~-------~~A~~Ie~Av~~~l~~g------g----g------~~~~T~e~~~av~~~ 336 (337)
T 1w0d_A 281 GI-ADPTAAIMSVALLLSHLGEH-------DAAARVDRAVEAHLATR------G----S------ERLATSDVGERIAAA 336 (337)
T ss_dssp SC-SCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHC------T----T------CCCCHHHHHHHHHHT
T ss_pred CC-cCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHcC------C----C------CCcCHHHHHHHHHhh
Confidence 99 99999999999999998754 49999999999999998 5 4 157999999999986
Q ss_pred H
Q 040623 433 L 433 (443)
Q Consensus 433 l 433 (443)
|
T Consensus 337 l 337 (337)
T 1w0d_A 337 L 337 (337)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=2.1e-101 Score=798.45 Aligned_cols=349 Identities=21% Similarity=0.193 Sum_probs=305.7
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCC--cccHHHHHHHHhcCeEEEecccCC
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDD--QVTIQSAQATLKYNVAIKCATITP 107 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~etl~~~k~~da~LkG~v~tp 107 (443)
++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++|++||||++||
T Consensus 27 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~tP 106 (429)
T 2d4v_A 27 PIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETP 106 (429)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccCC
Confidence 56999999999999999999988654 389999999999999999999 999999999999999999999999
Q ss_pred CcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEe
Q 040623 108 DEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~ 187 (443)
... +++|+|++|||+||||||+||+ +++||+++|+. + .+++|+||+|||| |++|++
T Consensus 107 ~~~---------~~~s~~l~LRk~LdLyanvRPv------~~~~gv~splk---~-----~~~vDivIvREnT-eg~Y~G 162 (429)
T 2d4v_A 107 VGG---------GIRSLNVAMRQDLDLYVCLRPV------RYFEGTPSPMR---H-----PEKVDMVIFRENS-EDIYAG 162 (429)
T ss_dssp SSS---------SSCCHHHHHHHHTTCCEEEEEE------ECCTTCCCSBS---C-----GGGCEEEEEEECS-CGGGGC
T ss_pred Ccc---------cccChhHHHHHHcCCEEEEEEE------EecCCCCCCCC---C-----cCCCCEEEEEeCC-CCeecC
Confidence 532 5789999999999999999998 78889999862 1 2479999999999 999986
Q ss_pred CCCCCcceeeee----------------eecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccc
Q 040623 188 DGLNQKTEWEVY----------------SFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKKW-PLYLSTKNTILKNYD 249 (443)
Q Consensus 188 ~~g~~~~~~~~~----------------~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~~-kVt~v~KaNvl~~td 249 (443)
... ..+.. ....+.+++ .+++||+++++||+|+||+||++|++ |||+|||+|||+.|+
T Consensus 163 ~e~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~td 238 (429)
T 2d4v_A 163 IEW----PAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTE 238 (429)
T ss_dssp CEE----CTTCHHHHHHHHHHHHTSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTH
T ss_pred ccc----ccCCcccccceeccccccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhh
Confidence 411 00000 000013566 56999999999999999999999966 799999999999999
Q ss_pred hHHHHHHHHHHHhhccCccc--------------------------cCCeEEeeeehhHHHHHHhhCCCce-EEEecCCc
Q 040623 250 GRFKDIFQEVYEAQWKSKFE--------------------------AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYD 302 (443)
Q Consensus 250 glf~~~~~ev~a~eyp~~f~--------------------------~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~Nlf 302 (443)
|+|+++|+||++++||+.|. +.+|+++|+|||++|||||++|++| ||||+|||
T Consensus 239 Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~Nlf 318 (429)
T 2d4v_A 239 GGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLN 318 (429)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcc
Confidence 99999999995459996441 2349999999999999999999999 99999999
Q ss_pred ccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchH
Q 040623 303 GDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLL 382 (443)
Q Consensus 303 GDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~ 382 (443)
||||||++|+++|||||+||+|+|++. +||||+||||||| ||||+ |||+|+|||++|||+|+|+.
T Consensus 319 GDILSD~aA~l~GslGl~pSanig~~~--a~fEpvHGSAPdi-----AGk~i-ANP~A~IlS~amML~hlg~~------- 383 (429)
T 2d4v_A 319 GDYVSDALAAEVGGIGMAPGANLSDTH--AIFEATHGTAPDI-----AGQGK-ANPSSLILSAVMMLEHLGWG------- 383 (429)
T ss_dssp HHHHHHHHHHHTTCGGGCCCEEECSSC--EEEECSCCCCTTT-----TTTTC-CCCHHHHHHHHHHHHHTTCH-------
T ss_pred cHHHHHHHHHhcCCHhhcCeeEECCCc--eEEecCCCChhHh-----cCCCC-cCcHHHHHHHHHHHHHcCCH-------
Confidence 999999999999999999999999764 8999999999998 99999 99999999999999999864
Q ss_pred HHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 383 DFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 383 ~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
++|++|++||.+++++|.+|+|||++++| .+.++|+||+|+|+++|
T Consensus 384 ~~A~~Ie~Av~~~l~~g~~T~Dlg~~~~g-----~~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 384 EAAQAIVAAMNATIAAGEVTGDLAALRGD-----VPALSTTEFTAALIRRF 429 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCEEHHHHTTCTT-----CCEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCccccccccCCC-----CCCcCHHHHHHHHHhhC
Confidence 49999999999999999999999854334 23589999999999864
No 27
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=1.6e-101 Score=798.76 Aligned_cols=356 Identities=22% Similarity=0.229 Sum_probs=308.3
Q ss_pred ccccc--cccEEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEE
Q 040623 31 QKIKV--ANPIVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIK 101 (443)
Q Consensus 31 ~ki~~--~~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 101 (443)
+|+.+ .++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||
T Consensus 12 ~~~~vp~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lk 91 (423)
T 1hqs_A 12 GVLNVPNNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIK 91 (423)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEE
Confidence 34444 256999999999999999999888654 389999999999999999999999999999999999999
Q ss_pred ecccCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCce
Q 040623 102 CATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKL 181 (443)
Q Consensus 102 G~v~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~ 181 (443)
||++||... +++|+|++|||+||||||+||+ +++||+++|+. + ..++|+||+||||
T Consensus 92 Gav~tP~~~---------~~~s~nl~LRk~LdlyanvRPv------~~~pg~~splk---~-----~~~vDivIvREnt- 147 (423)
T 1hqs_A 92 GPLTTPVGG---------GIRSLNVALRQELDLFVCLRPV------RYFTGVPSPVK---R-----PEDTDMVIFRENT- 147 (423)
T ss_dssp CCCCCCSSS---------SSCCHHHHHHHHTTCCEEEEEE------ECCTTCCCSBS---C-----GGGCEEEEEEECS-
T ss_pred CCccCCCCc---------CcCChhHHHHHHcCCEEEEEEE------eccCCCCCCCC---C-----CCCCcEEEEecCC-
Confidence 999999532 5789999999999999999998 78889999962 1 2479999999999
Q ss_pred eEEEEeCCCCCcceeeee----------------eecCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCc
Q 040623 182 KLVFVPDGLNQKTEWEVY----------------SFTGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNT 243 (443)
Q Consensus 182 e~~y~~~~g~~~~~~~~~----------------~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaN 243 (443)
|++|++... ..+.. ....+++++ .+++||+++++||+|+||+||++|+ ++||+|||+|
T Consensus 148 eg~Y~G~e~----~~g~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaN 223 (423)
T 1hqs_A 148 EDIYAGIEY----AKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGN 223 (423)
T ss_dssp CGGGGCCEE----CTTCHHHHHHHHHHHHHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTT
T ss_pred CCeeccccc----ccCCccccceeccccccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence 999986411 00000 000013567 5699999999999999999999984 4899999999
Q ss_pred cccccchHHHHHHHHHHHhhccCc-c-------------------------ccCCeEEeeeehhHHHHHHhhCCCce-EE
Q 040623 244 ILKNYDGRFKDIFQEVYEAQWKSK-F-------------------------EAAGIWYEHRLIDDMVAYALKSEGGY-VW 296 (443)
Q Consensus 244 vl~~tdglf~~~~~ev~a~eyp~~-f-------------------------~~~~I~~~~~~VDa~~~~Lv~~P~~F-Vi 296 (443)
||+.|+|+|+++|+||++++||+. | ++.+|+++|+|||+||||||++|++| ||
T Consensus 224 Vlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVi 303 (423)
T 1hqs_A 224 IMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVV 303 (423)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred cchhhhHHHHHHHHHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEE
Confidence 999999999999999954599952 1 33459999999999999999999999 99
Q ss_pred EecCCcccchhhhhhhhcCCcccccceeeCC-CCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHHHhhccc
Q 040623 297 ACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP-DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKL 375 (443)
Q Consensus 297 v~~NlfGDIlSDlaA~l~GglGlapSanig~-~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~ 375 (443)
||+|||||||||++|+++|||||+||+|||+ ++ ++||||+||||||| ||||+ |||+|+|||++|||+|||+.
T Consensus 304 vt~NlfGDILSD~aA~l~GslGl~pSanigp~~~-~alfEp~HGSAPdi-----AGk~i-ANP~A~IlS~amML~hlg~~ 376 (423)
T 1hqs_A 304 ATMNLNGDYISDALAAQVGGIGIAPGANINYETG-HAIFEATHGTAPKY-----AGLDK-VNPSSVILSGVLLLEHLGWN 376 (423)
T ss_dssp EECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTC-CEEEEESCCCCGGG-----TTTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred EECCcchHHHHHHHHhhcCCcccCccceecCCCC-ceEEecCCCChhhh-----CCCCC-cCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999994 33 58999999999998 99999 99999999999999999864
Q ss_pred CCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCCCCCccCHHHHHHHHHHHH
Q 040623 376 DGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETL 433 (443)
Q Consensus 376 ~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 433 (443)
++|++|++||.+++++|.+|+|||++++| .+.++|+||+|+|+++|
T Consensus 377 -------~~A~~Ie~Av~~~l~~g~~T~Dl~g~~~g-----~~~~~T~e~~daV~~~l 422 (423)
T 1hqs_A 377 -------EAADLVIKSMEKTIASKVVTYDFARLMDG-----ATEVKCSEFGEELIKNM 422 (423)
T ss_dssp -------HHHHHHHHHHHHHHHTTEECHHHHTTSSS-----CEECCHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHHcCCcccccccccCC-----CCCcCHHHHHHHHHHhh
Confidence 49999999999999999999999854333 23689999999999876
No 28
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=6.4e-101 Score=796.04 Aligned_cols=349 Identities=20% Similarity=0.173 Sum_probs=306.7
Q ss_pred ccEEEECCCcchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCc
Q 040623 37 NPIVEMDGDEMTRVIWKLIKDKLINP-------FLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDE 109 (443)
Q Consensus 37 ~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~ 109 (443)
++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||++||..
T Consensus 36 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~ 115 (435)
T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCc
Confidence 56999999999999999999988654 38999999999999999999999999999999999999999999964
Q ss_pred chhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCC
Q 040623 110 VRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDG 189 (443)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~ 189 (443)
. +++|+|++|||+||||||+||+ +++ |+++|+. + ..++|+||+|||| |++|++..
T Consensus 116 ~---------~~~s~~l~LRk~LdlyanlRPv------~~~-gv~splk---~-----~~~vDivIvREnT-eg~Y~G~e 170 (435)
T 1tyo_A 116 T---------GYRSLNVAIRQALDLYANIRPV------RYY-GQPAPHK---Y-----ADRVDMVIFRENT-EDVYAGIE 170 (435)
T ss_dssp S---------CTTHHHHHHHHHHTCCEEEEEE------ECC-SCCCSBT---T-----GGGCEEEEEEECS-SSGGGCCE
T ss_pred c---------cccChhHHHHHHcCCEEEeEEE------Eec-CCCCCCC---C-----cCCCcEEEEecCC-CCeecccc
Confidence 2 5788999999999999999998 778 8888861 1 2479999999999 99998641
Q ss_pred CCCcceeeee------ee-------cCCcceE-EEEeecHHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchHHHH
Q 040623 190 LNQKTEWEVY------SF-------TGAGGVA-LSMYNTDESICSFAEASMNTAYQKK-WPLYLSTKNTILKNYDGRFKD 254 (443)
Q Consensus 190 g~~~~~~~~~------~~-------~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvl~~tdglf~~ 254 (443)
. ..+.. .+ ....+++ .+++||+++++||+|+||+||++|+ ++||+|||+|||+.|+|+|++
T Consensus 171 ~----~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~ 246 (435)
T 1tyo_A 171 W----PHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMR 246 (435)
T ss_dssp E----CTTSHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHH
T ss_pred c----ccCCccccceeccchhhccccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHH
Confidence 1 00000 00 0013566 6799999999999999999999984 479999999999999999999
Q ss_pred HHHHHHHhhccC-cc-------------ccCCeEEeeeehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCccc
Q 040623 255 IFQEVYEAQWKS-KF-------------EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGL 319 (443)
Q Consensus 255 ~~~ev~a~eyp~-~f-------------~~~~I~~~~~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGl 319 (443)
+|+||++++||+ .| ++.+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||
T Consensus 247 ~~~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl 326 (435)
T 1tyo_A 247 WAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGM 326 (435)
T ss_dssp HHHHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCccc
Confidence 999995459996 23 33459999999999999999999999 9999999999999999999999999
Q ss_pred ccceeeCCCCceEEEecccccccccchhhcCCCCcccChhhHHHHHHHHH-HhhcccCCCcchHHHHHHHHHHHHHHHhc
Q 040623 320 MTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGL-AHRAKLDGNPRLLDFTEKLEAACIATVES 398 (443)
Q Consensus 320 apSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL-~~lG~~~~~~~l~~~A~~I~~Av~~~l~~ 398 (443)
+||+|+|+++ +||||+||||||| ||||+ |||+|+|||++||| +|||+. ++|++|++||.+++++
T Consensus 327 apSanig~~~--a~fEpvHGSAPdi-----AGk~i-ANP~A~IlS~amML~~hlg~~-------~~A~~Ie~Av~~~l~~ 391 (435)
T 1tyo_A 327 AAGMNMGDGI--AVAEPVHGTAPKY-----AGKDL-INPSAEILSASLLIGEFMGWR-------EVKSIVEYAIRKAVQS 391 (435)
T ss_dssp CEEEEECSSC--EEEEESSCCCGGG-----TTSSC-SCCHHHHHHHHHHHHTTSCCH-------HHHHHHHHHHHHHHHT
T ss_pred CceeeECCCc--eeeecCCCChHHh-----cCCCC-cCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHc
Confidence 9999999875 8999999999998 99999 99999999999999 998764 4999999999999999
Q ss_pred CCcccchhhhccCCCCCCCCccCHHHHHHHHHHHHH
Q 040623 399 GKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK 434 (443)
Q Consensus 399 G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~ 434 (443)
|.+|+|||++++| .+.++|+||+|+|+++|+
T Consensus 392 g~~T~Dlgg~~~g-----~~~~~T~e~~daV~~~l~ 422 (435)
T 1tyo_A 392 KKVTQDLARHMPG-----VQPLRTSEYTETLIAYID 422 (435)
T ss_dssp TCCBHHHHTTSTT-----CCCBCHHHHHHHHHHHHH
T ss_pred CCcCccccccCCC-----CCCcCHHHHHHHHHHHHh
Confidence 9999999854334 246899999999999995
No 29
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.10 E-value=0.016 Score=61.51 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=128.8
Q ss_pred cceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEE-EeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeee-hhH
Q 040623 205 GGVALSMYNTDESICSFAEASMNTAYQKKWPLYL-STKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRL-IDD 282 (443)
Q Consensus 205 ~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~-v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~-VDa 282 (443)
.++|..+..-..-++-+++.|.++||..+-+... .++ | +.-| .+....| +.|=.+++..|++++-+- +++
T Consensus 453 GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~--RaHD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~A 524 (741)
T 1itw_A 453 GDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDP-A--RAHD---AQVIAKV--ERYLKDYDTSGLDIRILSPVEA 524 (741)
T ss_dssp TCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCT-T--SHHH---HHHHHHH--HHHHTTSCCTTCCEEEECHHHH
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-C--CccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 4678666667888999999999999999876443 332 2 1122 3444455 334334556677777774 444
Q ss_pred HHH--HHhhCCCceEEEecCCcccchhhhhh--hhcCCcccccceeeCCCCceEEEec-ccccccccchhhc-CCCCccc
Q 040623 283 MVA--YALKSEGGYVWACKNYDGDVQSDFLA--QGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETST 356 (443)
Q Consensus 283 ~~~--~Lv~~P~~FViv~~NlfGDIlSDlaA--~l~GglGlapSanig~~~~~a~FEp-~HGSApdi~~~~i-AGk~i~A 356 (443)
+-. .-+++-..-+-||.|..=|+|+||.- .|.-|.=|..=.=+=..| +|||. .-||||.++.+-+ -|-=. =
T Consensus 525 ~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLR-W 601 (741)
T 1itw_A 525 TRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYLR-W 601 (741)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCCC-C
T ss_pred HHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccc-h
Confidence 432 23444444589999999999999997 544443333222222233 79999 5689999975544 33333 7
Q ss_pred ChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC
Q 040623 357 NSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG 399 (443)
Q Consensus 357 NP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G 399 (443)
+.+|-+||.+--|+|+|...+|++..-.|+.|.+|..+.|+++
T Consensus 602 DSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~ 644 (741)
T 1itw_A 602 DSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNN 644 (741)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999999999998889888888999999999999876
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.05 E-value=0.016 Score=61.47 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=128.5
Q ss_pred cceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEE-EeCCccccccchHHHHHHHHHHHhhccCccccCCeEEeeee-hhH
Q 040623 205 GGVALSMYNTDESICSFAEASMNTAYQKKWPLYL-STKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRL-IDD 282 (443)
Q Consensus 205 ~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~-v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~~~I~~~~~~-VDa 282 (443)
.++|..+..-..-++-+++.|.++||..+-+... .++ | +.-| .+....| +.|=.+++..|++++-+- +++
T Consensus 449 GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~--RaHD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~A 520 (738)
T 2b0t_A 449 NDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDP-E--RAHD---RNLASLV--EKYLADHDTEGLDIQILSPVEA 520 (738)
T ss_dssp TCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCT-T--CHHH---HHHHHHH--HHHHTTSCCTTCCEEEECHHHH
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-C--CccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 4677666667888999999999999999876443 332 2 1122 3444455 334334556677777774 444
Q ss_pred HHH--HHhhCCCceEEEecCCcccchhhhhh--hhcCCcccccceeeCCCCceEEEec-ccccccccchhhc-CCCCccc
Q 040623 283 MVA--YALKSEGGYVWACKNYDGDVQSDFLA--QGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETST 356 (443)
Q Consensus 283 ~~~--~Lv~~P~~FViv~~NlfGDIlSDlaA--~l~GglGlapSanig~~~~~a~FEp-~HGSApdi~~~~i-AGk~i~A 356 (443)
+-. .-+++-..-+-||.|..=|+|+||.- .|.-|.=|..=.=+=..| +|||. .-||||.++.+-+ -|-=. =
T Consensus 521 ~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLR-W 597 (738)
T 2b0t_A 521 TQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHLR-W 597 (738)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCCC-C
T ss_pred HHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccc-h
Confidence 432 23444444589999999999999997 544443333222222233 79999 5689999975544 33333 7
Q ss_pred ChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcC
Q 040623 357 NSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESG 399 (443)
Q Consensus 357 NP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G 399 (443)
+.+|-+||.+--|+|+|...+|++..-.|+.|.+|..+.|+++
T Consensus 598 DSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~ 640 (738)
T 2b0t_A 598 DSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEE 640 (738)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999999999998888888888999999999999876
No 31
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=90.16 E-value=0.15 Score=51.35 Aligned_cols=134 Identities=11% Similarity=-0.009 Sum_probs=77.3
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC---CEEEEeCCccccccchHH-HH-------HHHHHHHhhccCccccCCeEEe-ee
Q 040623 211 MYNTDESICSFAEASMNTAYQKKW---PLYLSTKNTILKNYDGRF-KD-------IFQEVYEAQWKSKFEAAGIWYE-HR 278 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~---kVt~v~KaNvl~~tdglf-~~-------~~~ev~a~eyp~~f~~~~I~~~-~~ 278 (443)
+.+|.+.+.+.++...+.-++.+. |+-+. ==|==..-+|+| +| +.++. .++ ++.+. ..
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l-~~~--------gi~v~GP~ 264 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKL-RDD--------GMTVIGPQ 264 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHH-HHC---------CCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHH-HHC--------CCeEeCCC
Confidence 567888888777776665555432 43322 122222223444 11 23332 221 55444 45
Q ss_pred ehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccC
Q 040623 279 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 357 (443)
Q Consensus 279 ~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~AN 357 (443)
=.|++- .+.+| ++|+ || -|++-.-+=-+++--+.|+--.--.----|-||||-|| ||||+ ||
T Consensus 265 paDt~F-----~~~~~D~vla--MY----HDQgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~di-----agkg~-a~ 327 (349)
T 4aty_A 265 GADLLL-----TNPDIDVFVA--MY----HDQGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFDI-----AGTLL-AD 327 (349)
T ss_dssp CHHHHT-----TCTTCSEEEE--SS----HHHHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTTS-----TTTTC-CC
T ss_pred chhhhh-----ccCCCCEEEE--cc----cccchHHHHhcccCCcEEEecCCCeeEeCCCCChhhhh-----ccCCC-CC
Confidence 566653 23578 6665 44 67775555556666677754211011235889999998 99999 99
Q ss_pred hhhHHHHHHHHHHh
Q 040623 358 SIASIFAWSQGLAH 371 (443)
Q Consensus 358 P~A~IlS~ammL~~ 371 (443)
|.+++-|.-|...-
T Consensus 328 ~~s~~~Ai~~a~~~ 341 (349)
T 4aty_A 328 PAPLLGAIRLVTTG 341 (349)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHh
Confidence 99999888776653
No 32
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=89.87 E-value=0.17 Score=50.69 Aligned_cols=137 Identities=13% Similarity=0.001 Sum_probs=85.7
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CCC---CEEEEeCCccccccchHHH--------HHHHHHHHhhccCccccCCeEEe-e
Q 040623 211 MYNTDESICSFAEASMNTAYQ-KKW---PLYLSTKNTILKNYDGRFK--------DIFQEVYEAQWKSKFEAAGIWYE-H 277 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~-r~~---kVt~v~KaNvl~~tdglf~--------~~~~ev~a~eyp~~f~~~~I~~~-~ 277 (443)
..+|.+.+.+.++...+--++ -+- |+ .|-==|==..-.|+|= -+.++. .+ .++.+. .
T Consensus 173 ~~it~e~i~~~i~~~~~~L~~~fgi~~PrI-aV~GLNPHAGE~G~~G~EE~~iI~Pai~~~-r~--------~Gi~~~GP 242 (328)
T 1yxo_A 173 DAISDERLTRVARILHADLRDKFGIAHPRI-LVCGLNPHAGEGGHLGREEIEVIEPCLERL-RG--------EGLDLIGP 242 (328)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCCSSCEE-EEECSSGGGGTTTTTCSHHHHTHHHHHHHH-HT--------TTCEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCCCE-EEEecCCCCCCCCCCCHhHHHHHHHHHHHH-HH--------CCCceeCC
Confidence 568899999888888875554 232 33 2222332222234441 222332 22 267764 6
Q ss_pred eehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCccc
Q 040623 278 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETST 356 (443)
Q Consensus 278 ~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~A 356 (443)
.=-|++-.+-.+ ++| ++|+ || -|++-.-.=-+|+--+.|+--.--.----|-||||-|| |||++ |
T Consensus 243 ~paDT~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDI-----AGkG~-A 308 (328)
T 1yxo_A 243 LPADTLFTPKHL--EHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDL-----AGSGR-I 308 (328)
T ss_dssp ECHHHHTSHHHH--TTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGG-----TTTCC-C
T ss_pred CCchhhcccccc--cCCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCCCccccc-----cCCCC-C
Confidence 667777555444 577 5554 34 58887777788888888865221001235889999998 99999 9
Q ss_pred ChhhHHHHHHHHHHh
Q 040623 357 NSIASIFAWSQGLAH 371 (443)
Q Consensus 357 NP~A~IlS~ammL~~ 371 (443)
||.+|+-|.-+..+.
T Consensus 309 ~~~Sl~~Ai~~A~~~ 323 (328)
T 1yxo_A 309 DSGSLQVALETAYQM 323 (328)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999988776654
No 33
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=89.74 E-value=0.17 Score=50.62 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=85.6
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCC---CEEEEeCCccccccchHH-HH-------HHHHHHHhhccCccccCCeEEe-ee
Q 040623 211 MYNTDESICSFAEASMNTAYQKKW---PLYLSTKNTILKNYDGRF-KD-------IFQEVYEAQWKSKFEAAGIWYE-HR 278 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~r~~---kVt~v~KaNvl~~tdglf-~~-------~~~ev~a~eyp~~f~~~~I~~~-~~ 278 (443)
..+|.+.+.+.++...++-++-+- |+ .|-==|==..-.|+| +| ..++. . +.++.+. ..
T Consensus 180 ~~it~e~i~~~i~~~~~L~~~fgi~~PrI-aV~GLNPHAGE~G~~G~EE~~iI~PAi~~~-r--------~~Gi~~~GP~ 249 (330)
T 2hi1_A 180 DTLSTARVETVIGIADTFLKRVGYVKPRI-AVAGVNPHAGENGLFGDEETRILTPAITDA-R--------AKGMDVYGPC 249 (330)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCSSCEE-EEECSSGGGSSTTSCCHHHHHTHHHHHHHH-H--------TTTCEEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCCCCCCE-EEEecCCCCCCCCCCCHhHHHHHHHHHHHH-H--------HCCCceeCCC
Confidence 568999999999999883332332 33 222233222223444 22 22222 2 2277764 66
Q ss_pred ehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCcccC
Q 040623 279 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 357 (443)
Q Consensus 279 ~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~AN 357 (443)
=-|++-.+-.+ ++| ++|| || -|++-.-+=-+|+--+.|+--.--.----|-||||-|| |||++ ||
T Consensus 250 paDT~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDI-----AGkG~-A~ 315 (330)
T 2hi1_A 250 PPDTVFLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDI-----AWTGK-AK 315 (330)
T ss_dssp CHHHHHHHHHT--TSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTTT-----TTTTC-CC
T ss_pred Cchhhcccccc--ccCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCCCccccc-----cCCCC-CC
Confidence 67887655544 678 5554 34 58888888888888889965221012235889999998 99999 99
Q ss_pred hhhHHHHHHHHHH
Q 040623 358 SIASIFAWSQGLA 370 (443)
Q Consensus 358 P~A~IlS~ammL~ 370 (443)
|.+++-|.-+..+
T Consensus 316 ~~Sl~~Ai~~A~~ 328 (330)
T 2hi1_A 316 SESMAVSIKLAMQ 328 (330)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999988876554
No 34
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=89.59 E-value=0.18 Score=50.59 Aligned_cols=137 Identities=14% Similarity=-0.018 Sum_probs=86.9
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC---CCEEEEeCCccccccchH--------HHHHHHHHHHhhccCccccCCeEEe-e
Q 040623 211 MYNTDESICSFAEASMNTAYQ-KK---WPLYLSTKNTILKNYDGR--------FKDIFQEVYEAQWKSKFEAAGIWYE-H 277 (443)
Q Consensus 211 ~~~T~~~~eRiar~AFe~A~~-r~---~kVt~v~KaNvl~~tdgl--------f~~~~~ev~a~eyp~~f~~~~I~~~-~ 277 (443)
..+|.+.+.+.++.+.+--++ -+ .|+-+.- =|=-..-.|+ .+-..++. .++ |++++ .
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~l-r~~--------Gi~~~GP 247 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTL-RQQ--------GINLIGP 247 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHH-HHT--------TCCEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHH-HHC--------CCceeCC
Confidence 567899999999888876665 23 2565441 1111111233 33444443 222 66554 6
Q ss_pred eehhHHHHHHhhCCCce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcCCCCccc
Q 040623 278 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETST 356 (443)
Q Consensus 278 ~~VDa~~~~Lv~~P~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iAGk~i~A 356 (443)
+-.|++-.+-.+ ++| ++|+.+. |++-.-.--+++--+.|+--.--.----|-||||-|| |||++ |
T Consensus 248 ~paDt~F~~~~~--~~~D~vlaMYH------DQGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDI-----AGkG~-A 313 (334)
T 3lxy_A 248 LPADTLFQPKYL--QHADAVLAMYH------DQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALEL-----AATGT-A 313 (334)
T ss_dssp ECHHHHTSHHHH--TTCSEEEESSH------HHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGG-----TTTTC-S
T ss_pred CChHHhcChhhh--ccCCEEEEccc------chhhHhHHhcccCccEEEecCCCeeeecCCCCcchhh-----ccCCC-C
Confidence 778887655544 678 8887655 6766666667777778864211001235889999998 99999 9
Q ss_pred ChhhHHHHHHHHHHh
Q 040623 357 NSIASIFAWSQGLAH 371 (443)
Q Consensus 357 NP~A~IlS~ammL~~ 371 (443)
||.+++-|.-+..+.
T Consensus 314 ~~~S~~~Ai~~A~~~ 328 (334)
T 3lxy_A 314 DVGSFITALNLAIKM 328 (334)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999888776654
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=87.38 E-value=0.3 Score=49.51 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=47.9
Q ss_pred Cce-EEEecCCcccchhhhhhhhcCCcccccceeeCCCCce-EEEecccccccccchhhcCCCC-cccChhhHHHHHHHH
Q 040623 292 GGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGE-TSTNSIASIFAWSQG 368 (443)
Q Consensus 292 ~~F-Viv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~-a~FEp~HGSApdi~~~~iAGk~-i~ANP~A~IlS~amm 368 (443)
++| .+|| || -|++-.-.=-+|+--+.|+--.- + ----|-||||-|| |||+ + |||.+|+-|.-+.
T Consensus 294 ~~~D~vlA--MY----HDQGliplK~l~F~~gVNvTlGL-P~IRTSvDHGTAfDI-----AGkG~~-Ad~~Sl~~Ai~~A 360 (367)
T 3tsn_A 294 KNCNRLVA--MY----HDLALAPLKALYFDKSINVSLNL-PIIRVSVDHGTAFDK-----AYKNAK-INTKSYFEAAKFA 360 (367)
T ss_dssp HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEEESS-SSCEEECCCCSCTTS-----CSSCCC-CCCHHHHHHHHHH
T ss_pred cCCCEEEE--cc----ccCcchhhhhcccCccEEEecCC-CeeeecCCCCcchhh-----cCCCCc-CChHHHHHHHHHH
Confidence 456 5554 33 67877777777777888865221 1 1235889999998 9999 9 9999999988776
Q ss_pred HHh
Q 040623 369 LAH 371 (443)
Q Consensus 369 L~~ 371 (443)
.+.
T Consensus 361 ~~~ 363 (367)
T 3tsn_A 361 INL 363 (367)
T ss_dssp HHS
T ss_pred HHh
Confidence 653
No 36
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=82.69 E-value=0.43 Score=49.05 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=10.0
Q ss_pred CccEEEecCCceeEEEEe
Q 040623 170 ATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 170 ~id~vivrent~e~~y~~ 187 (443)
++|+||+|||| |++|++
T Consensus 125 ~~DivIvREnt-eg~Y~g 141 (402)
T 4aoy_A 125 KKPISIARHAY-GDVYKN 141 (402)
T ss_dssp CBCCEEEEC-------CC
T ss_pred CCCEEEEEecc-CCeecC
Confidence 69999999999 999995
No 37
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=62.76 E-value=1.3 Score=45.69 Aligned_cols=17 Identities=0% Similarity=-0.070 Sum_probs=15.5
Q ss_pred CccEEEecCCceeEEEEe
Q 040623 170 ATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 170 ~id~vivrent~e~~y~~ 187 (443)
++|+||+|||| |++|++
T Consensus 148 ~~DivIvREnt-eg~Y~g 164 (427)
T 3us8_A 148 TKPIIVGRHAF-GDQYRA 164 (427)
T ss_dssp CSCEEEEEECS-SGGGGC
T ss_pred CCCEEEEEeCC-CCccCC
Confidence 59999999999 999985
No 38
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=48.42 E-value=27 Score=37.43 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=69.2
Q ss_pred EEEecCCceeEEEEeCCCCCcceeeeeeec-CCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchH
Q 040623 173 AVIQGPGKLKLVFVPDGLNQKTEWEVYSFT-GAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGR 251 (443)
Q Consensus 173 ~vivrent~e~~y~~~~g~~~~~~~~~~~~-~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdgl 251 (443)
+++-...++...+++.+|... .. ....+ ...++.++.++|.+.-+.+.+...+-|++.+--..+=-|++-||.+|-.
T Consensus 188 ~t~~~a~~~~ie~~~~~G~~~-vL-K~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSlHlKATMMKVSDPI 265 (741)
T 1itw_A 188 ALIGAPGSVKIELIAKDGSST-VL-KAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVLLSVHLKATMMKVSDPI 265 (741)
T ss_dssp EECCSSEEEEEEEEETTSCEE-EE-EEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEECBCTTTSTTHHHH
T ss_pred EEecCCCeEEEEEEcCCCcEE-Ee-cCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeehhhhhccccccCcc
Confidence 333455556677887665421 11 11111 1256778999999999999999999998876544444599999999864
Q ss_pred H----HHH-HHHHHHhhccCccccCCeEEeeeehh
Q 040623 252 F----KDI-FQEVYEAQWKSKFEAAGIWYEHRLID 281 (443)
Q Consensus 252 f----~~~-~~ev~a~eyp~~f~~~~I~~~~~~VD 281 (443)
. -++ |+++| +.|.+.|++.||..+.=+-|
T Consensus 266 iFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlgd 299 (741)
T 1itw_A 266 MFGQIVSEFYKDAL-TKHAEVLKQIGFDVNNGIGD 299 (741)
T ss_dssp HHHHHHHHHTHHHH-HHTHHHHHHTTCCGGGCHHH
T ss_pred cccchhhhhhHHHH-HHHHHHHHHcCCCcccCHHH
Confidence 4 233 45554 45777788888876654433
No 39
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=48.24 E-value=2.6 Score=43.22 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=15.3
Q ss_pred CccEEEecCCceeEEEEe
Q 040623 170 ATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 170 ~id~vivrent~e~~y~~ 187 (443)
++|+||+|||| +++|++
T Consensus 124 ~~divIvRE~t-eg~Y~g 140 (402)
T 2uxq_A 124 QKPIVVGRHAY-GDFYKN 140 (402)
T ss_dssp CSCCEEEEECS-CGGGGC
T ss_pred CCCeEEEeccC-CCcccC
Confidence 59999999999 999984
No 40
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=43.72 E-value=27 Score=37.37 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=67.4
Q ss_pred EEecCCceeEEEEeCCCCCcceeeeeeec-CCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHH
Q 040623 174 VIQGPGKLKLVFVPDGLNQKTEWEVYSFT-GAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRF 252 (443)
Q Consensus 174 vivrent~e~~y~~~~g~~~~~~~~~~~~-~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf 252 (443)
++-...++...+++.+|... .. ....+ ...++.++.++|.+.-+.+.+...+-|++.+--..+=-|++-||.+|-..
T Consensus 187 t~~~a~~~~ie~~~~~G~~~-vL-K~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSlHlKATMMKVSDPIi 264 (738)
T 2b0t_A 187 ILDAADEVQIKHIAADGTET-IL-KDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFSAHLKATMMKVSDPII 264 (738)
T ss_dssp ECSSCEEEEEEEECSSCCEE-EE-EEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEECBCTTTSTTHHHHH
T ss_pred EecCCCeEEEEEEcCCCcEE-Ee-cCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeehhhhhccccccCccc
Confidence 33445556667777655321 11 01111 12567789999999999999999999988765444445999999998643
Q ss_pred ----HHH-HHHHHHhhccCccccCCeEEeeeehh
Q 040623 253 ----KDI-FQEVYEAQWKSKFEAAGIWYEHRLID 281 (443)
Q Consensus 253 ----~~~-~~ev~a~eyp~~f~~~~I~~~~~~VD 281 (443)
-++ |+++| +.|.+.|++.||..+.=+-|
T Consensus 265 FGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlgd 297 (738)
T 2b0t_A 265 FGHVVRAYFADVF-AQYGEQLLAAGLNGENGLAA 297 (738)
T ss_dssp HHHHHHHHTHHHH-HHHHHHHHHTTCSSTTHHHH
T ss_pred ccchhhhhhHHHH-HHHHHHHHHcCCCcccCHHH
Confidence 222 44554 45667777778776644433
No 41
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=40.17 E-value=30 Score=27.61 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHHHHHHHHhhhh
Q 040623 389 EAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIK 440 (443)
Q Consensus 389 ~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~~~~~~~ 440 (443)
|++|+++|... +.|.||-..|+. +.+..+++|..+.+.+.|++.-+.|
T Consensus 21 Ee~VRryL~rkPmTT~dLl~KFK~----r~~~~~~~e~v~~~a~ILKki~p~q 69 (82)
T 1nha_A 21 EDAVRRYLTRKPMTTKDLLKKFQT----KKTGLSSEQTVNVLAQILKRLNPER 69 (82)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHTTS----SCCSSCHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHhCCccHHHHHHHHHH----hcccCCCHHHHHHHHHHHHHcCHHh
Confidence 58899999876 679999876665 2345799999999999998765544
No 42
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=38.16 E-value=87 Score=25.43 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=40.3
Q ss_pred cEEEECCCcchHHHHHH-HHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecc
Q 040623 38 PIVEMDGDEMTRVIWKL-IKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCAT 104 (443)
Q Consensus 38 ~I~vi~GDGIGpEv~~~-~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v 104 (443)
+|.+.=|-|++-.++.. +.+.+.+.|++++.+.++++.. .+ .+.++|++|.||-
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~---------~~----~~~~~Dvil~~pq 59 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA---------GE----KGQNADVVLLGPQ 59 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSST---------TH----HHHHCSEEEECTT
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHH---------Hh----hccCCCEEEEccc
Confidence 49999999999887654 4456667799999888887642 22 2467999998873
No 43
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=28.18 E-value=9.2 Score=39.25 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=14.9
Q ss_pred CccEEEecCCceeEEEEe
Q 040623 170 ATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 170 ~id~vivrent~e~~y~~ 187 (443)
.+|++|+|||| +++|.+
T Consensus 126 ~~divIvRe~t-~g~Y~g 142 (413)
T 1lwd_A 126 TKPITIGRHAH-GDQYKA 142 (413)
T ss_dssp CSCEEEEEECS-SGGGGC
T ss_pred CCceEEEeccc-CCccCC
Confidence 59999999999 998874
No 44
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=27.00 E-value=36 Score=26.62 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHHhcC-CcccchhhhccCCCCCCCCccCHHHHHHHHHHHHHHHhhhh
Q 040623 389 EAACIATVESG-KMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIK 440 (443)
Q Consensus 389 ~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~~~~~~~ 440 (443)
|++|+++|... ..|.||-..|+. +.+..+++|..+.+.+.|++.-+.|
T Consensus 12 Ee~VrryL~rkPmTt~dLl~KFK~----r~~~~~~~e~v~~~a~ILkki~p~q 60 (73)
T 1i27_A 12 EDAVRRYLTRKPMTTKDLLKKFQT----KKTGLSSEQTVNVLAQILKRLNPER 60 (73)
T ss_dssp HHHHHHHHHHSCBCHHHHHHTSCH----HHHCCCHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHcCCccHHHHHHHHHH----hcccCCCHHHHHHHHHHHHHcCHHh
Confidence 58999999876 679999755443 1124699999999999998765544
No 45
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=25.46 E-value=33 Score=35.08 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=17.2
Q ss_pred CceeeeecccCCCCCCccEE
Q 040623 155 KPICIGRHAFGDQYRATDAV 174 (443)
Q Consensus 155 ~pl~~~R~~~~d~~~~id~v 174 (443)
.+++++||||++.|.+.++.
T Consensus 143 vDivIvREnteg~Y~g~e~~ 162 (409)
T 2e0c_A 143 VDMIIFRENTDDLYRGIEYP 162 (409)
T ss_dssp CEEEEEEECSSGGGGCCEEC
T ss_pred CcEEEEEcCCCCEeCCcccc
Confidence 57899999999999988763
No 46
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=23.66 E-value=33 Score=35.35 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.9
Q ss_pred CceeeeecccCCCCCCccEE
Q 040623 155 KPICIGRHAFGDQYRATDAV 174 (443)
Q Consensus 155 ~pl~~~R~~~~d~~~~id~v 174 (443)
.+++++||||++.|.+.++.
T Consensus 147 vDivIvREnTeg~Y~G~e~~ 166 (429)
T 2d4v_A 147 VDMVIFRENSEDIYAGIEWP 166 (429)
T ss_dssp CEEEEEEECSCGGGGCCEEC
T ss_pred CCEEEEEeCCCCeecCcccc
Confidence 57889999999999888763
No 47
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=23.40 E-value=36 Score=34.90 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.7
Q ss_pred CceeeeecccCCCCCCccEE
Q 040623 155 KPICIGRHAFGDQYRATDAV 174 (443)
Q Consensus 155 ~pl~~~R~~~~d~~~~id~v 174 (443)
.+++++||||++.|.+.++.
T Consensus 143 vDivIvREnTeg~Y~G~e~~ 162 (412)
T 2iv0_A 143 VNFVIFRENTEDVYAGIEWP 162 (412)
T ss_dssp CEEEEEEECSSSGGGCCEEC
T ss_pred CCEEEEecCCCCEeCCcccc
Confidence 47889999999999888753
No 48
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=23.37 E-value=44 Score=33.18 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=15.3
Q ss_pred ccEEEECCC--cchHHHHHHH
Q 040623 37 NPIVEMDGD--EMTRVIWKLI 55 (443)
Q Consensus 37 ~~I~vi~GD--GIGpEv~~~~ 55 (443)
..|++-.|| ||||||+-.+
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 3 LRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCEEEECCSTTSSHHHHHHHH
T ss_pred CEEEEcCCCCcchhHHHHHHH
Confidence 358899998 9999987654
No 49
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=21.45 E-value=18 Score=36.94 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=14.7
Q ss_pred CccEEEecCCceeEEEEe
Q 040623 170 ATDAVIQGPGKLKLVFVP 187 (443)
Q Consensus 170 ~id~vivrent~e~~y~~ 187 (443)
.+|++|+|||| +++|.+
T Consensus 125 ~~divi~Re~t-~g~Y~g 141 (399)
T 1zor_A 125 KKPIIIGRHAY-GDIYNA 141 (399)
T ss_dssp CSCCEEEECCS-SGGGGC
T ss_pred Cccceeeeccc-CCCcCC
Confidence 48999999999 888874
No 50
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=20.35 E-value=66 Score=26.04 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 040623 215 DESICSFAEASMNTAYQKKWPLYLSTK 241 (443)
Q Consensus 215 ~~~~eRiar~AFe~A~~r~~kVt~v~K 241 (443)
.+.+++.+++|.++|++.+.+|+++|=
T Consensus 15 s~~s~~al~~A~~la~~~~a~l~ll~v 41 (146)
T 3s3t_A 15 SDAAQAAFTEAVNIAQRHQANLTALYV 41 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 355889999999999988777777653
No 51
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=20.21 E-value=59 Score=32.32 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=15.7
Q ss_pred cEEEECCC--cchHHHHHHHH
Q 040623 38 PIVEMDGD--EMTRVIWKLIK 56 (443)
Q Consensus 38 ~I~vi~GD--GIGpEv~~~~~ 56 (443)
||++-.|| ||||||+-.+.
T Consensus 8 ~iaIT~GDpaGIGpEii~ka~ 28 (330)
T 2hi1_A 8 TVAITMGDPAGIGPEIIVKAL 28 (330)
T ss_dssp CEEEECCCTTTTHHHHHHHHH
T ss_pred CEEEcCCCCcchhHHHHHHHH
Confidence 49999998 99999876553
Done!