BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040624
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 6/251 (2%)
Query: 15 YGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARE--NGSYDGYMNHIIDSKDQA 72
+G + +INHGI M++V + G++FF L +EEK+KYA + G GY + + ++
Sbjct: 77 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 73 FDWIDRLHLVTKPEDKRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEEN 132
+W D + PE+KR L +WP+ P + E EY + L + KA++ L LE +
Sbjct: 137 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD 196
Query: 133 CFLDMYG--EEASMLSIFNLYPPCPRPDLAIGLKPHADASVFTYLIQDKEVEGLQFQKDD 190
G EE + N YP CP+P+LA+G++ H D S T+++ + V GLQ +
Sbjct: 197 RLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEG 255
Query: 191 QWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVVTNTERGRMSLVMFCFPNPNKEI-E 249
+W +P + V+++GD +EI+SNG +KS +HR + N E+ R+S +FC P +K + +
Sbjct: 256 KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLK 315
Query: 250 PVKGLVTGTRP 260
P+ +V+ P
Sbjct: 316 PLPEMVSVESP 326
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 6/251 (2%)
Query: 15 YGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARE--NGSYDGYMNHIIDSKDQA 72
+G + +INHGI M++V + G++FF L +EEK+KYA + G GY + + ++
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135
Query: 73 FDWIDRLHLVTKPEDKRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEEN 132
+W D + PE+KR L +WP+ P + E EY + L + KA++ L LE +
Sbjct: 136 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD 195
Query: 133 CFLDMYG--EEASMLSIFNLYPPCPRPDLAIGLKPHADASVFTYLIQDKEVEGLQFQKDD 190
G EE + N YP CP+P+LA+G++ H D S T+++ + V GLQ +
Sbjct: 196 RLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEG 254
Query: 191 QWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVVTNTERGRMSLVMFCFPNPNKEI-E 249
+W +P + V+++GD +EI+SNG +KS +HR + N E+ R+S +FC P +K + +
Sbjct: 255 KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLK 314
Query: 250 PVKGLVTGTRP 260
P+ +V+ P
Sbjct: 315 PLPEMVSVESP 325
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 131/236 (55%), Gaps = 5/236 (2%)
Query: 15 YGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARE--NGSYDGYMNHIIDSKDQA 72
+G +INHGI ++V + G++FF L +EEK+KYA + G GY + + ++
Sbjct: 77 WGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 73 FDWIDRLHLVTKPEDKRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEEN 132
+W D + PE+KR L +WP+ P + E EY + L + KA++ L LE +
Sbjct: 137 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD 196
Query: 133 CFLDMYG--EEASMLSIFNLYPPCPRPDLAIGLKPHADASVFTYLIQDKEVEGLQFQKDD 190
G EE + N YP CP+P+LA+G++ H D S T+++ + V GLQ +
Sbjct: 197 RLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX-VPGLQLFYEG 255
Query: 191 QWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVVTNTERGRMSLVMFCFPNPNK 246
+W +P + V ++GD +EI+SNG +KS +HR + N E+ R+S +FC P +K
Sbjct: 256 KWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK 311
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 9/243 (3%)
Query: 15 YGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARENGSYDGYMNHIIDSKDQAFD 74
+G +++NHGI D V++ K + E++ K + + +G + D D
Sbjct: 31 WGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTDX-----D 85
Query: 75 WIDRLHLVTKPEDKRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEENCF 134
W L P + P+ + +RE+ ++ ++EKL E LL + L LE+
Sbjct: 86 WESTFFLKHLP--ISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYL 143
Query: 135 LD-MYGEEASMLSI-FNLYPPCPRPDLAIGLKPHADASVFTYLIQDKEVEGLQFQKDDQW 192
+ YG + + YPPCP+PDL GL+ H DA L QD +V GLQ KD QW
Sbjct: 144 KNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQW 203
Query: 193 YRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVVTNTERGRMSLVMFCFPNPNKEIEPVK 252
VP + V+N+GDQ+E+++NG +KS HRV+ + R SL F P + I P
Sbjct: 204 IDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAP 263
Query: 253 GLV 255
LV
Sbjct: 264 ALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 14/273 (5%)
Query: 3 FAQRLYSALRALYGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARENGSYDGYM 62
FAQ L ++ YG + ++ +D A +D + K FF LP+E KK+YA G GY+
Sbjct: 22 FAQELGASFER-YGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 63 NHIIDSKDQA--FDWIDRLHLVTKPEDKRQLK------LWPENPQSFREILHEYTAKIEK 114
+++ A +D + H + + +WP +F+ + ++
Sbjct: 81 PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDG 140
Query: 115 LNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLAIGLKPHADASVFTY 174
+L+AIA L LE + F + S+L + + YPP P+ + H D + T
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLH-YPPIPKDATGVRAGAHGDINTITL 199
Query: 175 LIQDKEVEGLQFQKDDQWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVVT--NTERG 232
L+ +E +D QW + PG VIN+GD +E ++N + S +HRVV RG
Sbjct: 200 LLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 233 --RMSLVMFCFPNPNKEIEPVKGLVTGTRPRLY 263
R S F + EI+ ++ VT P Y
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 25/255 (9%)
Query: 4 AQRLYSALRALYGAVKIINHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARENGSYDGYMN 63
A+R +LR G + NH ID ++++ + FF + + + RE ++DG+
Sbjct: 15 AKRFVESLRET-GFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRE--THDGFFP 71
Query: 64 HIIDSKDQAFDWIDRLHLVTKPEDKRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAI 123
I + H V ++ + W P S R + Y K L LL+ I
Sbjct: 72 ASISETAKG-------HTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWI 124
Query: 124 ARALNLEENCFLDM------YGEEASMLSIFNLYPPCPRPDL--AIGLKPHADASVFTYL 175
E + ++L I + YPP + AI H D ++ T L
Sbjct: 125 ETYSPDEIKAKFSIPLPEXIANSHKTLLRILH-YPPXTGDEEXGAIRAAAHEDINLITVL 183
Query: 176 IQDKEVEGLQFQ-KDDQWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRVV----TNTE 230
E GLQ + KD W VP G +IN+GD ++ S+G F S HRV+ T+
Sbjct: 184 PTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKT 242
Query: 231 RGRMSLVMFCFPNPN 245
+ R+SL +F P+P+
Sbjct: 243 KSRISLPLFLHPHPS 257
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 89 RQLKLWPENPQ--SFREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLS 146
++ +WP+ + F++ +Y + L+ LLK A AL EEN F + + ++ S
Sbjct: 124 HEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS 183
Query: 147 IFNLYPPC--PRPDLAI---------GLKPHADASVFTYLIQDKEVEGLQFQKDDQWYRV 195
+ + P P P+ AI + H D S+ T L Q V+ LQ + + +
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDI 242
Query: 196 PVIPGAFVINVGDQIEIMSNGIFKSPIHRV-VTNTERGRMSLVMFCFPNPNKEIEP 250
++IN G + ++N +K+PIHRV N E R SL F + I+P
Sbjct: 243 EADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 89 RQLKLWPENPQ--SFREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLS 146
++ +WP+ + F++ +Y + L+ LLK A AL EEN F + + ++ S
Sbjct: 124 HEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS 183
Query: 147 IFNLYPPC--PRPDLAI---------GLKPHADASVFTYLIQDKEVEGLQFQKDDQWYRV 195
+ + P P P+ AI + H D S+ T L Q V+ LQ + + +
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDI 242
Query: 196 PVIPGAFVINVGDQIEIMSNGIFKSPIHRV-VTNTERGRMSLVMFCFPNPNKEIEP 250
++IN G + ++N +K+PIHRV N E R SL F + I+P
Sbjct: 243 EADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 92 KLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLY 151
L+P F I +Y + + + + + RA E + ++ + + +L F +
Sbjct: 128 NLFPSG--DFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR-FRYF 184
Query: 152 PPCPRPDLA----IGLKPHADASVFTYLIQDKEVEG---LQFQKDDQWYRVPVIPGAFVI 204
P P A + + PH D S+ T + Q G LQ + + +P P A ++
Sbjct: 185 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 244
Query: 205 NVGDQIEIMSNGIFKSPIHRVVTN-----TERGRMSLVMFCFPNPN 245
G +++ G K+P H V R S V F PN +
Sbjct: 245 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 101 FREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLA 160
F I +Y + + + + + RA E + ++ + + +L F +P P A
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR-FRYFPQVPEHRSA 173
Query: 161 ----IGLKPHADASVFTYLIQDKEVEG---LQFQKDDQWYRVPVIPGAFVINVGDQIEIM 213
+ + PH D S+ T + Q G LQ + + +P P A ++ G ++
Sbjct: 174 EEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLV 233
Query: 214 SNGIFKSPIHRVVTNTE-----RGRMSLVMFCFPNPN 245
+ G K+P H V R S V F PN +
Sbjct: 234 TGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 101 FREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLA 160
F I +Y + + + + + RA E + ++ + + +L F +P P A
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR-FRYFPQVPEHRSA 173
Query: 161 ----IGLKPHADASVFTYLIQDKEVEG---LQFQKDDQWYRVPVIPGAFVINVGDQIEIM 213
+ + PH D S+ T + Q G LQ + + +P P A ++ G ++
Sbjct: 174 EEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLV 233
Query: 214 SNGIFKSPIHRVVTNTE-----RGRMSLVMFCFPNPN 245
+ G K+P H V R S V F PN +
Sbjct: 234 TGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 101 FREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLA 160
F I +Y + + + + + RA E + ++ + + +L F +P P A
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR-FRYFPQVPEHRSA 173
Query: 161 ----IGLKPHADASVFTYLIQDKEVEG---LQFQKDDQWYRVPVIPGAFVINVGDQIEIM 213
+ + PH D S+ T + Q G LQ + + +P P A ++ G ++
Sbjct: 174 EEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLV 233
Query: 214 SNGIFKSPIHRVVTN-----TERGRMSLVMFCFPNPN 245
+ G K+P H V R S V F PN +
Sbjct: 234 TGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 101 FREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLA 160
F I +Y + + + + + RA E + ++ + + +L F +P P A
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR-FRYFPQVPEHRSA 173
Query: 161 ----IGLKPHADASVFTYLIQDKEVEG---LQFQKDDQWYRVPVIPGAFVINVGDQIEIM 213
+ + PH D S+ T + Q G LQ + + +P P A ++ G ++
Sbjct: 174 EEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLV 233
Query: 214 SNGIFKSPIHRVVTN-----TERGRMSLVMFCFPNPN 245
+ G K+P H V + S V F PN +
Sbjct: 234 TGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|2X1X|E Chain E, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|A Chain A, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|B Chain B, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|C Chain C, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|D Chain D, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 110
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 189 DDQWYRVPVIPGAFVINVGDQIEIMSNGIFKSPIHRV 225
D++W + +P I+VG + + +N FK P V
Sbjct: 12 DNEWRKTQCMPREVAIDVGKEFGVATNTFFKPPCVSV 48
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 92 KLWPENP-QSFREILHEYTAKIEKLNEMLLKAIA 124
KL P P ++F+ I EY +EKLNE+ +K A
Sbjct: 253 KLMPREPFETFKRITKEYGYDVEKLNELKIKRYA 286
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 92 KLWPENP-QSFREILHEYTAKIEKLNEMLLKAIA 124
KL P P ++F+ I EY +EKLNE+ +K A
Sbjct: 230 KLXPREPFETFKRITKEYGYDVEKLNELKIKRYA 263
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 88 KRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSI 147
KR + NP SF + + EY K+ + ++++ + + + N F+++Y E + +
Sbjct: 322 KRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVES-SGEVTVNRNKFVELYNELTQIFTE 380
Query: 148 FN 149
FN
Sbjct: 381 FN 382
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 88 KRQLKLWPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEENCFLDMYGEEASMLSI 147
KR + NP SF + + EY K+ + ++++ + + + N F+++Y E + +
Sbjct: 302 KRLNSITTANPSSFNKYIGEYKQKLIRKYRFVVES-SGEVTVNRNKFVELYNELTQIFTE 360
Query: 148 FN 149
FN
Sbjct: 361 FN 362
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 37 GKQFFG--LPLEEKKKYARENGSYDGYMNHII-DSKDQAFDWIDRLHLVTKPEDKRQLKL 93
G F+G + L K+K + G++ Y I K A W+ K +K+ +L
Sbjct: 1289 GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVREL 1348
Query: 94 WPENPQSFREILHEYTAKIEKLNEMLLKAIARALNLEENCF----LDMYGEEASMLSIFN 149
NP S + ++ ++E KA+A AL E F + GE+ SM +
Sbjct: 1349 LLSNPNSTTGATGAMSGRMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM-DVET 1407
Query: 150 LYPPCPRPDLAIG 162
+ D+A+G
Sbjct: 1408 ISTGSLSLDIALG 1420
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 125 RALNLEENCFLDMYGEEASMLSIFNLYPPCPRPDLAIGLKPHADASVFTYLIQDKEVEGL 184
L L +NC+ + +++ + L PP P P +A + H DA + Y KE
Sbjct: 278 HCLKLLKNCYAALPDHGKVIVAEYIL-PPSPDPSIATKVVIHTDALMLAYNPGGKERTEK 336
Query: 185 QFQ 187
+FQ
Sbjct: 337 EFQ 339
>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport)
Length = 252
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 22 NHGIDPAFMDKVDEVGKQFFGLPLEEKKKYARENGSYDGYMNHIIDSKDQAFDWIDRLHL 81
N + P F+ K D G G + K + DG + + D D W++++ L
Sbjct: 155 NEQVVPLFLSKQDAQG--LLGQVKPKHPKADIQVLDIDGVLQTLQDKND---TWLNQVVL 209
Query: 82 VTKPEDKRQLKLWPENPQS 100
V PE + ++ P+ P +
Sbjct: 210 VPSPESREYIRTLPKPPNT 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,466,377
Number of Sequences: 62578
Number of extensions: 360904
Number of successful extensions: 1038
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 21
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)