Query 040627
Match_columns 267
No_of_seqs 145 out of 1076
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02700 homoserine dehydrogen 100.0 1.4E-84 3E-89 615.5 31.7 267 1-267 111-377 (377)
2 COG0460 ThrA Homoserine dehydr 100.0 4.5E-78 9.8E-83 561.1 26.0 240 2-267 81-331 (333)
3 PRK09466 metL bifunctional asp 100.0 2E-75 4.3E-80 598.6 30.3 263 1-266 543-810 (810)
4 PRK09436 thrA bifunctional asp 100.0 5.2E-75 1.1E-79 597.5 29.7 264 1-266 549-816 (819)
5 PRK06813 homoserine dehydrogen 100.0 1.1E-74 2.3E-79 544.4 27.7 237 2-265 89-339 (346)
6 PRK08374 homoserine dehydrogen 100.0 1.2E-73 2.5E-78 536.1 28.3 239 2-267 94-333 (336)
7 PRK06392 homoserine dehydrogen 100.0 1.1E-71 2.4E-76 520.6 24.5 231 2-265 84-324 (326)
8 PRK06349 homoserine dehydrogen 100.0 5.9E-71 1.3E-75 532.1 27.9 238 2-265 75-320 (426)
9 PRK06270 homoserine dehydrogen 100.0 2.1E-70 4.5E-75 514.8 26.8 238 2-266 92-338 (341)
10 KOG0455 Homoserine dehydrogena 100.0 2.1E-66 4.5E-71 463.1 26.3 264 1-266 90-363 (364)
11 PF00742 Homoserine_dh: Homose 100.0 1.6E-59 3.4E-64 405.4 16.0 173 62-260 1-179 (179)
12 PF03447 NAD_binding_3: Homose 99.1 3.2E-11 7E-16 96.3 2.1 53 2-54 62-117 (117)
13 PRK13303 L-aspartate dehydroge 97.5 0.00018 3.8E-09 65.8 5.7 68 2-69 64-134 (265)
14 PRK05447 1-deoxy-D-xylulose 5- 95.9 0.018 3.8E-07 55.8 6.2 133 2-149 94-238 (385)
15 PRK11579 putative oxidoreducta 94.5 0.29 6.4E-06 45.9 9.7 80 2-83 67-151 (346)
16 PRK10206 putative oxidoreducta 93.4 0.57 1.2E-05 44.2 9.5 81 2-84 67-152 (344)
17 COG0673 MviM Predicted dehydro 92.6 0.78 1.7E-05 42.2 9.1 83 2-86 70-157 (342)
18 PRK13302 putative L-aspartate 91.5 0.35 7.5E-06 44.4 5.3 65 2-70 70-135 (271)
19 TIGR00036 dapB dihydrodipicoli 91.4 0.33 7.1E-06 44.4 5.0 60 2-61 71-131 (266)
20 PRK13304 L-aspartate dehydroge 91.4 0.42 9.1E-06 43.6 5.7 75 2-81 64-141 (265)
21 PLN02696 1-deoxy-D-xylulose-5- 91.3 0.22 4.8E-06 49.2 3.9 95 2-107 152-255 (454)
22 COG1712 Predicted dinucleotide 89.8 0.75 1.6E-05 41.8 5.6 66 2-68 63-132 (255)
23 PF01113 DapB_N: Dihydrodipico 89.7 0.3 6.6E-06 39.4 2.9 52 2-54 70-121 (124)
24 PRK00048 dihydrodipicolinate r 89.1 0.65 1.4E-05 42.2 4.9 59 2-61 63-121 (257)
25 TIGR03855 NAD_NadX aspartate d 88.9 0.85 1.8E-05 41.1 5.4 64 2-70 40-108 (229)
26 PRK13301 putative L-aspartate 87.6 0.9 2E-05 42.0 4.8 65 2-67 65-133 (267)
27 PF01408 GFO_IDH_MocA: Oxidore 83.5 2.7 5.8E-05 32.6 5.1 42 2-45 65-106 (120)
28 TIGR01921 DAP-DH diaminopimela 81.8 2.2 4.8E-05 40.5 4.7 70 2-72 63-137 (324)
29 COG4091 Predicted homoserine d 78.9 10 0.00022 36.9 8.0 134 2-143 104-239 (438)
30 PLN02819 lysine-ketoglutarate 66.2 22 0.00049 38.9 8.0 54 2-57 651-705 (1042)
31 TIGR01761 thiaz-red thiazoliny 61.7 9.4 0.0002 36.4 3.7 67 8-79 75-142 (343)
32 TIGR03215 ac_ald_DH_ac acetald 61.3 9.7 0.00021 35.5 3.7 189 2-223 67-264 (285)
33 COG1102 Cmk Cytidylate kinase 58.3 3.9 8.5E-05 35.5 0.5 37 88-131 31-69 (179)
34 COG1922 WecG Teichoic acid bio 49.2 22 0.00049 32.6 3.9 71 4-81 17-92 (253)
35 PRK08300 acetaldehyde dehydrog 44.3 25 0.00054 33.1 3.5 29 2-30 73-101 (302)
36 KOG2741 Dimeric dihydrodiol de 43.7 1.5E+02 0.0033 28.6 8.7 82 6-91 79-165 (351)
37 PF03435 Saccharop_dh: Sacchar 42.4 74 0.0016 30.1 6.5 84 2-88 70-157 (386)
38 PRK04207 glyceraldehyde-3-phos 41.9 29 0.00062 33.0 3.6 67 2-71 81-156 (341)
39 PRK15059 tartronate semialdehy 37.9 1.6E+02 0.0034 27.1 7.7 99 2-113 88-195 (292)
40 PRK12464 1-deoxy-D-xylulose 5- 37.3 48 0.001 32.4 4.3 83 14-107 101-192 (383)
41 PF05402 PqqD: Coenzyme PQQ sy 37.0 32 0.0007 24.1 2.4 29 83-111 14-42 (68)
42 TIGR00243 Dxr 1-deoxy-D-xylulo 34.9 60 0.0013 31.7 4.6 84 14-107 108-200 (389)
43 PF13021 DUF3885: Domain of un 33.3 13 0.00028 24.3 -0.2 24 21-44 6-29 (38)
44 COG1748 LYS9 Saccharopine dehy 32.2 1.7E+02 0.0037 28.6 7.2 78 2-81 71-149 (389)
45 PF01118 Semialdhyde_dh: Semia 31.7 56 0.0012 25.7 3.3 32 2-33 69-100 (121)
46 TIGR03128 RuMP_HxlA 3-hexulose 30.3 3.4E+02 0.0074 23.0 8.6 72 2-76 105-181 (206)
47 PLN02775 Probable dihydrodipic 29.6 1E+02 0.0022 28.9 5.0 66 1-69 82-148 (286)
48 TIGR02130 dapB_plant dihydrodi 29.4 68 0.0015 29.9 3.8 64 2-68 72-136 (275)
49 PRK06256 biotin synthase; Vali 29.4 2.1E+02 0.0045 26.6 7.1 133 12-154 96-240 (336)
50 COG0743 Dxr 1-deoxy-D-xylulose 28.8 71 0.0015 31.1 3.9 120 15-149 105-236 (385)
51 PRK00436 argC N-acetyl-gamma-g 28.2 71 0.0015 30.2 3.8 32 2-33 71-102 (343)
52 COG3367 Uncharacterized conser 28.0 46 0.00099 31.9 2.4 36 14-49 88-123 (339)
53 PF10649 DUF2478: Protein of u 26.1 18 0.00039 31.0 -0.6 47 14-69 84-132 (159)
54 TIGR01244 conserved hypothetic 25.9 57 0.0012 26.5 2.4 98 15-115 19-128 (135)
55 COG0289 DapB Dihydrodipicolina 25.5 1.4E+02 0.0031 27.7 5.1 65 2-67 72-136 (266)
56 PLN02389 biotin synthase 24.8 4.6E+02 0.01 25.3 8.8 97 14-113 123-227 (379)
57 PF00482 T2SF: Type II secreti 24.5 17 0.00038 27.3 -0.9 46 56-106 8-53 (124)
58 KOG3333 Mitochondrial/chloropl 24.2 74 0.0016 27.4 2.8 40 13-52 111-155 (188)
59 TIGR00433 bioB biotin syntheta 23.5 4.9E+02 0.011 23.3 8.4 94 15-113 70-172 (296)
60 PHA00368 internal virion prote 23.4 26 0.00055 38.3 -0.2 15 83-97 986-1000(1315)
61 PRK04151 IMP cyclohydrolase; P 22.1 73 0.0016 28.3 2.4 26 83-108 70-96 (197)
62 TIGR03450 mycothiol_INO1 inosi 21.5 5.9E+02 0.013 24.7 8.5 73 8-82 134-212 (351)
63 PF15594 Imm30: Immunity prote 20.9 3.4E+02 0.0073 21.6 6.0 38 208-245 42-79 (124)
64 PF07755 DUF1611: Protein of u 20.5 65 0.0014 30.4 1.9 35 14-49 53-88 (301)
65 PRK08508 biotin synthase; Prov 20.4 4.5E+02 0.0097 24.0 7.4 95 14-113 47-151 (279)
No 1
>PLN02700 homoserine dehydrogenase family protein
Probab=100.00 E-value=1.4e-84 Score=615.54 Aligned_cols=267 Identities=84% Similarity=1.258 Sum_probs=258.2
Q ss_pred CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
.|+||||+|.+.+.+|++||++|+|||||||.++|.++++|+++++++++|+||||||||+|||+++++++.+||+|++|
T Consensus 111 ~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~~~~~yEatVgaGlPiI~tl~~ll~sGd~I~~I 190 (377)
T PLN02700 111 LVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPRRIRHESTVGAGLPVIASLNRILSSGDPVHRI 190 (377)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcCCeEEEEeeeeeccchHHHHHHHhhccCCEEEE
Confidence 48999999988899999999999999999999999999999999998899999999999999999999999889999999
Q ss_pred EEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCCCCCCC
Q 040627 81 VGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPN 160 (267)
Q Consensus 81 ~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~~~~~~ 160 (267)
+||||||+||||++|++|.+|+|||++||++|||||||++||+|+|+|+|++||||++|.+++++||+++|+.|+++...
T Consensus 191 ~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEpDP~~Dl~G~D~ArKl~ILAr~~G~~~~~~dv~v~~l~p~~~~~~ 270 (377)
T PLN02700 191 VGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEPDPRDDLGGMDVARKALILARLLGKRINMDSIKVESLYPEEMGPD 270 (377)
T ss_pred EEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCccccccHhHHHHHHHHHHHhCCCCChhhEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988644
Q ss_pred CCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeCCcceE
Q 040627 161 IMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV 240 (267)
Q Consensus 161 ~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~ 240 (267)
..+.+||+..||+.+|..|.++++.|+++|+++||||++++++++|+|+.+|++|||++++|++|+|.|+|++|+++|++
T Consensus 271 ~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~Va~~~~~~~~V~~~~vp~~hpla~v~g~~N~v~~~t~~~~~~plv 350 (377)
T PLN02700 271 LMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYVCVIEGSSCQVGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLV 350 (377)
T ss_pred ccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEEEEEECCeEEEEEEEECCCCccccCCCCceEEEEEecccCCcceE
Confidence 46889999878999999999999999999999999999998899999999999999999999999999999999988999
Q ss_pred EEeCCCChHHHHHHHHHHHHHHhhhCC
Q 040627 241 IQGAGAGNDTTAAGVLADILDIQDLFP 267 (267)
Q Consensus 241 i~G~GAG~~~TA~av~~Dll~i~~~~~ 267 (267)
++|+|||+.+||+|||+||+++++.||
T Consensus 351 v~G~GAG~~~TA~~vl~Dll~i~~~~~ 377 (377)
T PLN02700 351 IQGAGAGNDTTAAGVLADILDLQDLFH 377 (377)
T ss_pred EEcCCCChhHhHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999886
No 2
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-78 Score=561.11 Aligned_cols=240 Identities=34% Similarity=0.597 Sum_probs=220.2
Q ss_pred eEEEcCCCh-HH---HHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASS-ET---VEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~-~~---~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
||||+++.+ +. +.+|++||++|||||||||+++|.+|.++.++|++ ++.|+||||||||+|||+++|+.+. ||+
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~~l~-g~~ 159 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRELLA-GDE 159 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHhhcc-cCc
Confidence 678887763 33 45689999999999999999999999999999875 6799999999999999999999995 999
Q ss_pred EEEEEEEeccchHHHhhcccC-CCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVED-GKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYP 154 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~-g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p 154 (267)
|++|+|||||||||||++|++ +.||+|+|+|||++||||+||++||+|+|+|||++||||+ ||.+++++||+++||.|
T Consensus 160 I~~i~GIlNGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~DPt~DleG~DaA~Kl~ILa~~~~g~~~~~~DV~veGI~~ 239 (333)
T COG0460 160 ILSIRGILNGTTNYILTRMEEGGLSFEDALAEAQELGYAEADPTDDLEGIDAARKLVILARLAFGTPETLDDVEVEGITP 239 (333)
T ss_pred eEEEEEEEeccHHHHHHHHHccCCCHHHHHHHHHHcCCCCCCCCCCccchHHHHHHHHHHHHHcCCCCChhheEEecCcC
Confidence 999999999999999999975 5599999999999999999999999999999999999995 99999999999999864
Q ss_pred CCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE-CC---eEEEEEEeecCCCCcccccCCCeEEEEE
Q 040627 155 EEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE-GS---RCTVGIQELPKNSPLGRLRGSDNVLEIY 230 (267)
Q Consensus 155 ~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~-~~---~~~V~p~~v~~~~pla~v~g~~N~v~i~ 230 (267)
++ .++++.|+++|+++||||+++ ++ .++|+|+++|.+|||++|+|.+|++.|+
T Consensus 240 --------------------i~---~~d~~~A~~~G~~iklvg~~~~~~~~~~~~V~p~~vp~~~pLa~V~g~~Nav~i~ 296 (333)
T COG0460 240 --------------------IT---PEDIEFAKELGYVIKLVGIADKTGKGIEARVHPTLVPKDHPLASVNGVMNAVAIE 296 (333)
T ss_pred --------------------CC---HHHHHHHHhCCcEEEEEEEEEecCCceEEEEEeEEeCCCCcceecCCcceEEEEE
Confidence 22 246889999999999999998 32 4899999999999999999999999999
Q ss_pred eeeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhhCC
Q 040627 231 SRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP 267 (267)
Q Consensus 231 t~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~~ 267 (267)
|+.++ |++++|||||+.+||+||++|+++++++.+
T Consensus 297 td~~g--~l~~~G~GAG~~~TAsaV~sDli~i~~~~~ 331 (333)
T COG0460 297 TDAYG--PLVLYGPGAGGEVTASAVLSDLLRIARLKV 331 (333)
T ss_pred eeccc--eEEEEeCCCCcchhHHHHHHHHHHHHHhcc
Confidence 99994 899999999999999999999999998754
No 3
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=2e-75 Score=598.61 Aligned_cols=263 Identities=35% Similarity=0.568 Sum_probs=250.8
Q ss_pred CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccC---CCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLT---STKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a---~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
.||||||++.+.+.+|++||++|+|||||||+++| .+|+++.++++ +++.|+||||||||+|||+++++++.+||+
T Consensus 543 ~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l~~l~~~gd~ 622 (810)
T PRK09466 543 LVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTVRDLRNSGDS 622 (810)
T ss_pred cEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHHHHHHhccCc
Confidence 38999999999999999999999999999999876 57888888876 567999999999999999999998878999
Q ss_pred EEEEEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEE 156 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~~ 156 (267)
|++|+|||||||||||++|++|.+|+|||++||++|||||||++||+|+|+|+|++||||++|.+++++||+++||+|++
T Consensus 623 i~~i~GIlnGT~nyi~~~~~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~D~a~Kl~ILa~~~g~~~~~~dv~~~~l~p~~ 702 (810)
T PRK09466 623 ILAISGIFSGTLSWLFLQFDGSVPFSELVDQAWQQGLTEPDPRDDLSGRDVMRKLVILAREAGYEIEPDDVRVESLVPAH 702 (810)
T ss_pred EEEEEEEEccHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCccccccHHHHHHHHHHHHHhCCCCChheEEEeecCCcc
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE-CCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeC
Q 040627 157 MGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE-GSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYS 235 (267)
Q Consensus 157 ~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~-~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~ 235 (267)
+. +++.+||+.. |+.+|..|.++++.|+++|+++||||+++ +++++|+|+.+|++||||+++|++|++.|+|++|+
T Consensus 703 i~--~i~~~df~~~-l~~~d~~~~~~i~~A~~~g~~lrlva~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~~~t~~~~ 779 (810)
T PRK09466 703 LE--DGSLDQFFEN-GDELDEQMLQRLEAAAEQGKVLRYVARFDANGKARVGVEAVRPDHPLANLLPCDNVFAIESRWYR 779 (810)
T ss_pred cc--cCCHHHHhhh-hhhhhhhHHHHHHHHHHCCCEEEEEEEEEeCCEEEEEEEEECCCCcccccCCCceEEEEEecccc
Confidence 87 7899999986 99999999999999999999999999998 57999999999999999999999999999999998
Q ss_pred CcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 236 EQPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 236 ~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
++|++++|||||+.+||+||++||+++++.|
T Consensus 780 ~~~l~~~G~GAG~~~TA~aVlsDll~i~~~~ 810 (810)
T PRK09466 780 DNPLVIRGPGAGREVTAGAIQSDLNRLAQLL 810 (810)
T ss_pred CCceEEEcCCCChHHhHHHHHHHHHHHHhhC
Confidence 8899999999999999999999999999876
No 4
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=5.2e-75 Score=597.45 Aligned_cols=264 Identities=44% Similarity=0.743 Sum_probs=251.0
Q ss_pred CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCC---CHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTS---TKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~---~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
.|+||||++.+.+.+|++||++|+|||||||+++|. +|+++.+++++ ++.|+||||||||+|||+++++++++||+
T Consensus 549 ~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~~~~~~g~~ 628 (819)
T PRK09436 549 PVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQNLLNAGDE 628 (819)
T ss_pred CEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHHHHHhccCc
Confidence 389999999999999999999999999999999995 67888888764 67999999999999999999999877999
Q ss_pred EEEEEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEE 156 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~~ 156 (267)
|++|+|||||||||||++|++|.+|+|||++||++|||||||++||+|+|+|+|++||||++|.+++++||+++||.|++
T Consensus 629 i~~i~GilnGT~nyIl~~~~~g~~f~~al~~Aq~~GyaE~DP~~Dl~G~D~a~Kl~ILa~~~g~~~~~~dv~~~gi~~~~ 708 (819)
T PRK09436 629 LLKFEGILSGSLSFIFGKLDEGMSFSEATRLAKEKGYTEPDPRDDLSGMDVARKLLILAREAGYELELEDIEVESVLPEE 708 (819)
T ss_pred EEEEEEEEeChHHHHhhhhhcCCCHHHHHHHHHHcCCCCCCCcccccchHHHHHHHHHHHHhCCCCChhheeecccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeCC
Q 040627 157 MGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSE 236 (267)
Q Consensus 157 ~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~ 236 (267)
+. ..++++||+.. ++.+|..|.++++.|+++|+++||||++++++++|+|+.+|++||||+++|++|+|.|+|++|++
T Consensus 709 ~~-~~~~~~~~~~~-~~~~d~~~~~~~~~a~~~g~~lr~va~~~~~~~~v~~~~v~~~~~la~v~g~~n~v~~~t~~~~~ 786 (819)
T PRK09436 709 FD-ASGSVDEFMAR-LPELDAEFAARVAKARAEGKVLRYVGQIEDGKCRVGIAEVDANHPLYKVKGGENALAFYTRYYQP 786 (819)
T ss_pred hc-ccccHHHHHhh-chhhhhHHHHHHHHHHHCCCEEEEEEEEeCCeEEEEEEEECCCCccccCCCCceEEEEEecccCc
Confidence 65 34688999986 99999999999999999999999999999889999999999999999999999999999999998
Q ss_pred cceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 237 QPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 237 ~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
.|++++|||||+.+||+|||+||+++++++
T Consensus 787 ~~~~~~G~gAG~~~TA~av~~Dll~i~~~~ 816 (819)
T PRK09436 787 IPLVLRGYGAGNEVTAAGVFADLLRTLSWK 816 (819)
T ss_pred eeeEEEcCCCChHHhHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999865
No 5
>PRK06813 homoserine dehydrogenase; Validated
Probab=100.00 E-value=1.1e-74 Score=544.41 Aligned_cols=237 Identities=24% Similarity=0.405 Sum_probs=218.9
Q ss_pred eEEEcCCCh----HHHHHH-HHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCC
Q 040627 2 AFVDCSASS----ETVEIL-TQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGD 75 (267)
Q Consensus 2 vvVd~t~~~----~~~~~~-~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd 75 (267)
||||||+++ +++..| ++||++|+|||||||+++|.+++++.++|++ ++.|+||||||||+|||++++..+ +||
T Consensus 89 VvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l~~~~-~g~ 167 (346)
T PRK06813 89 VLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIGQFSL-AGC 167 (346)
T ss_pred EEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHHhhhc-ccC
Confidence 899999876 777665 9999999999999999999999999999975 679999999999999999998777 799
Q ss_pred cEEEEEEEeccchHHHhhccc-CCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHH-HhCCCCCCCceEeeecC
Q 040627 76 PVHRIVGSLSGTLGYVMSEVE-DGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILAR-LLGMRINIDSIKIESLY 153 (267)
Q Consensus 76 ~I~~i~GIlNGT~NyILs~m~-~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~gi~ 153 (267)
+|++|+|||||||||||++|+ +|.+|+|||++||++||||+||++||+|+|+|+|++|||+ +||.+++++||+++||
T Consensus 168 ~I~~i~GIlNGT~NyIL~~m~~~g~~f~eal~~Aq~lGyaE~DP~~Dl~G~D~A~Kl~ILA~~~~G~~i~~~dv~~eGI- 246 (346)
T PRK06813 168 HIEKIEGILNGTTNYILTKMNEEDITFEEALKEAQSKGIAETNPILDVSGSDSACKLLLLTNSLMGTENKLTDIHIKGI- 246 (346)
T ss_pred cEEEEEEEEechHHHHHhhhhhcCCCHHHHHHHHHHcCCCCCCCccccccHHHHHHHHHHHHHHcCCCCChHheEeecc-
Confidence 999999999999999999995 8999999999999999999999999999999999999996 7999999999999975
Q ss_pred CCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--C-Ce--EEEEEEeecCCCCcccccCCCeEEE
Q 040627 154 PEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--G-SR--CTVGIQELPKNSPLGRLRGSDNVLE 228 (267)
Q Consensus 154 p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~-~~--~~V~p~~v~~~~pla~v~g~~N~v~ 228 (267)
++++ .++++.|+++|+++||||++. + ++ ++|+|+++|++|||++|+|++|++.
T Consensus 247 -------------------~~i~---~~~i~~A~~~g~~iklva~~~~~~~~~~~~~V~p~~vp~~~pla~v~g~~N~v~ 304 (346)
T PRK06813 247 -------------------EHVT---KQQIRNAKEQNKIIKLIASAYKDNEGNVNLNVEPYKIEKNHPLANVNGTEKGIT 304 (346)
T ss_pred -------------------ccCC---HHHHHHHHHCCCEEEEEEEEEEcCCCeEEEEEEEEEECCCCccccCCCCceEEE
Confidence 4455 478999999999999999985 3 44 4899999999999999999999999
Q ss_pred EEeeeeCCcceEEEeCCCC-hHHHHHHHHHHHHHHhhh
Q 040627 229 IYSRCYSEQPLVIQGAGAG-NDTTAAGVLADILDIQDL 265 (267)
Q Consensus 229 i~t~~~~~~~l~i~G~GAG-~~~TA~av~~Dll~i~~~ 265 (267)
|+|++++ +++++| ||| +.|||+||++||+++++.
T Consensus 305 ~~td~~g--~~~~~G-gag~~~~TAsavl~Dii~i~~~ 339 (346)
T PRK06813 305 FFTDTMG--QVTTIG-GASNPRGAAAAALKDIINLYRK 339 (346)
T ss_pred EEeeecC--cEEEEc-CCCCCcccHHHHHHHHHHHHhh
Confidence 9999997 589999 666 799999999999999874
No 6
>PRK08374 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-73 Score=536.10 Aligned_cols=239 Identities=31% Similarity=0.496 Sum_probs=225.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
|+||||++......+++||++|+||||+||+++|.+++++.+++++ +.+|+||++|++|+|||+++|+++ +||+|++|
T Consensus 94 VvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l-~g~~i~~i 172 (336)
T PRK08374 94 IVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLLRENL-LGDTVKRI 172 (336)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc-cccceEEE
Confidence 7899997776667789999999999999999999999999999875 569999999999999999999999 79999999
Q ss_pred EEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCCCCCCC
Q 040627 81 VGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPN 160 (267)
Q Consensus 81 ~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~~~~~~ 160 (267)
+|||||||||||++|++|.+|+|||++||++||||+||++||+|+|+|+|++||||+.+.+++++||+++||
T Consensus 173 ~GIlnGT~nyIl~~m~~g~~f~eal~eAq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~~~~~~~~dv~~~gi-------- 244 (336)
T PRK08374 173 EAVVNATTTFILTRMEQGKTFEEALKEAQTLGIAERDPSKDIDGIDAGYKATILHWVAFPPITFEEVGIRGI-------- 244 (336)
T ss_pred EEEEechHHHHHHHhhCCCCHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHhCCCCChhheeeecc--------
Confidence 999999999999999999999999999999999999999999999999999999997559999999999875
Q ss_pred CCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeCCcceE
Q 040627 161 IMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV 240 (267)
Q Consensus 161 ~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~ 240 (267)
++++ .++++.|+++|+++||||++++++++|+|+.+|++|||+ ++|++|++.|+|++++ +++
T Consensus 245 ------------~~i~---~~~i~~a~~~g~~lklv~~~~~~~~~V~p~~v~~~~pl~-v~g~~n~v~~~t~~~g--~~~ 306 (336)
T PRK08374 245 ------------KDVT---EGEIERAKAKGRNVRLVATVEEGRISVKPKKLPENSPLA-VEGVENAAVIKTDLLG--ELV 306 (336)
T ss_pred ------------ccCC---HHHHHHHHHCCCEEEEEEEEECCeEEEEEEEECCCCCee-eCCCceEEEEEccccC--cEE
Confidence 4455 478999999999999999998778999999999999999 9999999999999997 599
Q ss_pred EEeCCCChHHHHHHHHHHHHHHhhhCC
Q 040627 241 IQGAGAGNDTTAAGVLADILDIQDLFP 267 (267)
Q Consensus 241 i~G~GAG~~~TA~av~~Dll~i~~~~~ 267 (267)
++|+|||+.+||+||++||+++++.+|
T Consensus 307 ~~G~GAG~~~TA~avl~Dll~~~~~~~ 333 (336)
T PRK08374 307 LKGPGAGGKETASGVVTDIIKAALKFP 333 (336)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999876
No 7
>PRK06392 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-71 Score=520.63 Aligned_cols=231 Identities=25% Similarity=0.374 Sum_probs=212.5
Q ss_pred eEEEcCCChH----HHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASSE----TVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~~----~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
|+||||++++ ...+|++||++|+|||||||+++|.+++++.++|++ +++|+||||||||+|||++++..+ +||+
T Consensus 84 VvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~~~~~-~g~~ 162 (326)
T PRK06392 84 VIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLRDYST-LPSR 162 (326)
T ss_pred EEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhhhhhc-ccCC
Confidence 7999998643 335679999999999999999999999999999875 579999999999999999998777 6999
Q ss_pred EEEEEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPE 155 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~ 155 (267)
|++|+|||||||||||++|++|.+|+|||++||++||||+||++||+|+|+|+|++||||+ ||.+++++||+++||
T Consensus 163 i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~lG~aE~DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~dv~~~gi--- 239 (326)
T PRK06392 163 IKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKMGIAETNYSDDLMGLDAARKSVILANHLFGKDYTLRDVTYDGI--- 239 (326)
T ss_pred EEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHcCCCCCHHHeeecCc---
Confidence 9999999999999999999999999999999999999999999999999999999999996 899999999999986
Q ss_pred CCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CC--eEEEEEEeecCCCCcccccCCCeEEEEEe
Q 040627 156 EMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GS--RCTVGIQELPKNSPLGRLRGSDNVLEIYS 231 (267)
Q Consensus 156 ~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t 231 (267)
++++. ++++++|||+++. ++ +++|+|+.+|++|||++++|.+|++.|+|
T Consensus 240 -----------------~~i~~----------~~~~~~kli~~~~~~~~~~~~~V~p~~~~~~~pla~v~g~~n~~~~~t 292 (326)
T PRK06392 240 -----------------ENIDR----------SSMDNERLVTEVAMINGGPHAESRIRSLSRNDFLGMIGPLSLGYQMET 292 (326)
T ss_pred -----------------cccCH----------hhCCceEEEEEEEEeCCcEEEEEEEEEcCCCCcchhcCCCceEEEEEe
Confidence 34442 3578899999986 33 58899999999999999999999999999
Q ss_pred eeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 232 RCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 232 ~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
|.++ +++++|+|||+.+||+||++|+++++.+
T Consensus 293 d~~g--~~~~~G~gaG~~~Ta~a~l~Dl~~~~~~ 324 (326)
T PRK06392 293 DING--TINVSDNYDGPYETAGAVVNDVMLLSKY 324 (326)
T ss_pred cccC--cEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 9987 5999999999999999999999999875
No 8
>PRK06349 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-71 Score=532.14 Aligned_cols=238 Identities=28% Similarity=0.466 Sum_probs=221.3
Q ss_pred eEEEcCCChHHHHHH-HHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCcEEE
Q 040627 2 AFVDCSASSETVEIL-TQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVHR 79 (267)
Q Consensus 2 vvVd~t~~~~~~~~~-~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~~ 79 (267)
||||||++.+++..+ ++||++||||||+||.+++.+++++.++|++ ++.|+|||+|+||+|+|+++++.+ .+++|.+
T Consensus 75 vVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l-~~~~I~~ 153 (426)
T PRK06349 75 IVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL-AANRITR 153 (426)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc-ccCCeeE
Confidence 789999887776554 8999999999999999999999999999875 568999999999999999999998 6899999
Q ss_pred EEEEeccchHHHhhccc-CCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCCCC
Q 040627 80 IVGSLSGTLGYVMSEVE-DGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPEEM 157 (267)
Q Consensus 80 i~GIlNGT~NyILs~m~-~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~~~ 157 (267)
|+|||||||||||++|+ +|.+|+|||++||++||||+||++||+|+|+|+|++||||+ ||.+++++||+++||
T Consensus 154 I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~~i~~~gi----- 228 (426)
T PRK06349 154 VMGIVNGTTNYILTKMTEEGLSFEDALKEAQRLGYAEADPTFDVEGIDAAHKLAILASLAFGTRVDFDDVYVEGI----- 228 (426)
T ss_pred EEEEEeCcHHHHHhhhhhcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCCChhheeeeCc-----
Confidence 99999999999999995 89999999999999999999999999999999999999996 899999999999986
Q ss_pred CCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE---CC-eEEEEEEeecCCCCcccccCCCeEEEEEeee
Q 040627 158 GPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE---GS-RCTVGIQELPKNSPLGRLRGSDNVLEIYSRC 233 (267)
Q Consensus 158 ~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~---~~-~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~ 233 (267)
++++ .++++.|+++|+++||||+++ ++ +++|+|+++|++|||++++|++|+|.|+|++
T Consensus 229 ---------------~~i~---~~di~~a~~~g~~iklv~~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~~~~~~ 290 (426)
T PRK06349 229 ---------------SKIT---AEDIAYAKELGYRIKLLGIAERTEEGIELRVHPTLIPKSHPLANVNGVMNAVFVEGDA 290 (426)
T ss_pred ---------------ccCC---HHHHHHHHHCCCeEEEEEEEEEcCCcEEEEEEEEEECCCCcceeCCCCceEEEEEecc
Confidence 3344 356899999999999999997 23 5889999999999999999999999999999
Q ss_pred eCCcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 234 YSEQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 234 ~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
++ |++++|||||+.|||+||++||+++++.
T Consensus 291 ~g--~~~~~G~GAG~~~Ta~av~~Di~~~~~~ 320 (426)
T PRK06349 291 VG--ETMFYGPGAGGLPTASAVVADLVDIARN 320 (426)
T ss_pred cc--cEEEEeCCCChHHHHHHHHHHHHHHHHh
Confidence 95 7999999999999999999999999875
No 9
>PRK06270 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-70 Score=514.79 Aligned_cols=238 Identities=29% Similarity=0.524 Sum_probs=220.7
Q ss_pred eEEEcCCCh----HHHH-HHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCC
Q 040627 2 AFVDCSASS----ETVE-ILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGD 75 (267)
Q Consensus 2 vvVd~t~~~----~~~~-~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd 75 (267)
||||||++. +++. ++++||++|+||||+||+|++.+++++.+++++ ++.|+||++|++|+|+|+++++++ .|+
T Consensus 92 vVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l-~g~ 170 (341)
T PRK06270 92 VVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAMPIINLAKETL-AGN 170 (341)
T ss_pred EEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhc-ccC
Confidence 799999874 3344 459999999999999999999999999999875 669999999999999999999998 599
Q ss_pred cEEEEEEEeccchHHHhhcc-cCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecC
Q 040627 76 PVHRIVGSLSGTLGYVMSEV-EDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLY 153 (267)
Q Consensus 76 ~I~~i~GIlNGT~NyILs~m-~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~ 153 (267)
+|.+|+|||||||||||++| ++|.+|+|||++||++||||+||++||+|+|+|+|++||||+ ||.+++++||+++||
T Consensus 171 ~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G~aE~DP~~D~~G~D~a~Kl~Ila~~~~g~~~~~~~v~~~gi- 249 (341)
T PRK06270 171 DIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELGYAEADPTYDVEGIDAALKVVILANSILGADLTIKDVEVEGI- 249 (341)
T ss_pred ceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHHcCCCCCHHHeeecCc-
Confidence 99999999999999999999 789999999999999999999999999999999999999996 899999999999986
Q ss_pred CCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCe-EEEEEEeecCCCCcccccCCCeEEEEEee
Q 040627 154 PEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSR-CTVGIQELPKNSPLGRLRGSDNVLEIYSR 232 (267)
Q Consensus 154 p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~-~~V~p~~v~~~~pla~v~g~~N~v~i~t~ 232 (267)
+.++ +++++.|+++|+++||||+++..+ ++|+|+++|++|||+ ++|++|++.|+|+
T Consensus 250 -------------------~~~~---~~~~~~a~~~g~~~r~v~~~~~~~~~~V~~~~~~~~~~l~-~~g~~n~~~~~~~ 306 (341)
T PRK06270 250 -------------------TKIT---PEAIELAAKEGYRIKLIGEVSREKDLSVSPRLVPLDHPLA-VSGTLNAATFETD 306 (341)
T ss_pred -------------------ccCC---HHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEECCCCCcE-ECCCceEEEEEec
Confidence 3344 467899999999999999998544 999999999999999 9999999999999
Q ss_pred eeCCcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 233 CYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 233 ~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
+++ |++++|+|||+.+||+||++||+++++..
T Consensus 307 ~~~--~~~~~G~gaG~~~Ta~av~~Dl~~i~~~~ 338 (341)
T PRK06270 307 LAG--DVTVVGRGAGSIETASAILSDLIAIHDRY 338 (341)
T ss_pred ccC--CEEEEeCCCChHHHHHHHHHHHHHHHHhh
Confidence 997 79999999999999999999999998754
No 10
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-66 Score=463.11 Aligned_cols=264 Identities=59% Similarity=0.933 Sum_probs=253.0
Q ss_pred CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC---CCceEEeeeccccccchHHHHHhhcCCCcE
Q 040627 1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR---PRRIRYESTVGAGLPVIASLNRILSSGDPV 77 (267)
Q Consensus 1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~---~~~~~yEatVggGiPii~~l~~~~~~gd~I 77 (267)
+++||||+|.+.++.|.++++.|+.++|+||.+++...+-|+.|+.+ ++.++.|||||+|+|||.+|++.+.+||+|
T Consensus 90 ~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAGLPiIs~L~eiI~tGDev 169 (364)
T KOG0455|consen 90 LILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAGLPIISSLNEIISTGDEV 169 (364)
T ss_pred eEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCCchhHHHHHHHHhcCCce
Confidence 58999999999999999999999999999999999999999999875 668899999999999999999999999999
Q ss_pred EEEEEEeccchHHHhhcccCC----CCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCC-CCceEeeec
Q 040627 78 HRIVGSLSGTLGYVMSEVEDG----KPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRIN-IDSIKIESL 152 (267)
Q Consensus 78 ~~i~GIlNGT~NyILs~m~~g----~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~-~~dv~~~gi 152 (267)
.+|+||||||+.|||++++.| .+|+|.++.|+++||+||||++|+.|+|+|||..||+|+.|+.++ ++.++++++
T Consensus 170 ~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKvtIl~Ri~Gv~ves~~Sfpv~SL 249 (364)
T KOG0455|consen 170 HKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILARILGVRVESMDSFPVESL 249 (364)
T ss_pred eEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcccccccchhhhhhhhhhhhccceeecccccchhhc
Confidence 999999999999999999754 579999999999999999999999999999999999999999988 999999999
Q ss_pred CCCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CCeEEEEEEeecCCCCcccccCCCeEEEEE
Q 040627 153 YPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GSRCTVGIQELPKNSPLGRLRGSDNVLEIY 230 (267)
Q Consensus 153 ~p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~~~~V~p~~v~~~~pla~v~g~~N~v~i~ 230 (267)
.|+.+. ..++.+||+. ||.++|.+|.++.++|..+|+++|||+.++ +....|+.+.++++|||+++.|++|.|.|+
T Consensus 250 iPepl~-s~~sadeFL~-gl~~~D~~~~~~~keA~~egkVlRfvg~~dva~ksv~Vgiekyd~shPfa~L~gSDNiisi~ 327 (364)
T KOG0455|consen 250 IPEPLP-SLMSADEFLH-GLVKLDQNIEERVKEASSEGKVLRFVGVIDVANKSVQVGIEKYDKSHPFARLRGSDNIISIY 327 (364)
T ss_pred CCcccc-ccccHHHHHh-hhhhhhhhHHHHHHHhhccCcEEEEEEEEecccceEEeeeEeccccCchhhhcCCCceEEEE
Confidence 999884 6789999998 899999999999999999999999999999 668999999999999999999999999999
Q ss_pred eeeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 231 SRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 231 t~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
|++|..+|++++|.|||...||++|+.|+++|+..|
T Consensus 328 tkrY~t~PlViqGAGAGaavTAAGVLgDiIki~~~~ 363 (364)
T KOG0455|consen 328 TKRYKTQPLVIQGAGAGAAVTAAGVLGDIIKIQDLF 363 (364)
T ss_pred eeecccCceEEEccCCcchhhhhHHHHHHHHHHHhh
Confidence 999988999999999999999999999999999876
No 11
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the catalytic domain of homoserine dehydrogenase.; GO: 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2EJW_E 3ING_A 3JSA_A 3C8M_A 1TVE_A 1EBU_D 1EBF_B 1Q7G_A 3DO5_A 3MTJ_A.
Probab=100.00 E-value=1.6e-59 Score=405.44 Aligned_cols=173 Identities=39% Similarity=0.714 Sum_probs=155.4
Q ss_pred cchHHHHHhhcCCCcEEEEEEEeccchHHHhhcccC-CCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hC
Q 040627 62 PVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVED-GKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LG 139 (267)
Q Consensus 62 Pii~~l~~~~~~gd~I~~i~GIlNGT~NyILs~m~~-g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g 139 (267)
|||+++++++ +||+|++|+|||||||||||++|++ |.+|+|||++||++||||+||++||+|+|+++|++||||+ ||
T Consensus 1 Pii~~l~~~~-~~~~I~~i~GIlNGT~NyIL~~m~~~g~~f~~al~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~~~g 79 (179)
T PF00742_consen 1 PIINTLRNLL-AGDKIKRIEGILNGTTNYILTRMEEEGLSFSEALKEAQELGYAEADPSDDVDGWDAARKLVILARLAFG 79 (179)
T ss_dssp SHHHHHHHCC-TTSCEEEEEEE--HHHHHHHHHHHTHT--HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred CchhHHhhhc-ccCceEEEEEEEcCHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCcccCCCCHhHHHHHHHHhHHHHC
Confidence 9999999997 7999999999999999999999976 9999999999999999999999999999999999999997 99
Q ss_pred CCCCCCceEeeecCCCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--C--CeEEEEEEeecCCC
Q 040627 140 MRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--G--SRCTVGIQELPKNS 215 (267)
Q Consensus 140 ~~i~~~dv~~~gi~p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~--~~~~V~p~~v~~~~ 215 (267)
.+++++||+++||. .++ .++++.|+++|+++||||+++ + ..++|+|+++|++|
T Consensus 80 ~~~~~~dv~~~gI~--------------------~i~---~~~i~~a~~~g~~~klva~~~~~~~~~~~~V~p~~v~~~~ 136 (179)
T PF00742_consen 80 VDLDPEDVPVEGIR--------------------DIT---PEDIAYAKKEGKVLKLVASADRENGGIQASVKPELVPKDH 136 (179)
T ss_dssp TT-SGGGSEE--ST--------------------TGG---HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTS
T ss_pred CCCCccceeecCCC--------------------CcC---HHHHHHHHHCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCC
Confidence 99999999999874 333 367999999999999999998 3 36899999999999
Q ss_pred CcccccCCCeEEEEEeeeeCCcceEEEeCCCChHHHHHHHHHHHH
Q 040627 216 PLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADIL 260 (267)
Q Consensus 216 pla~v~g~~N~v~i~t~~~~~~~l~i~G~GAG~~~TA~av~~Dll 260 (267)
||++++|++|++.|+|+++ ++++++|+|||+.+||+||++||+
T Consensus 137 pla~v~g~~N~v~i~t~~~--g~~~~~G~GAG~~~TA~avl~Dll 179 (179)
T PF00742_consen 137 PLASVKGSENAVEIETDYY--GPLVLYGPGAGPLPTASAVLSDLL 179 (179)
T ss_dssp GGGGSSTTEEEEEEEESSS--EEEEEEECSSSHHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEEEcccc--ccEEEEcCCCChHHHHHHHHHhhC
Confidence 9999999999999999998 489999999999999999999996
No 12
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.09 E-value=3.2e-11 Score=96.34 Aligned_cols=53 Identities=30% Similarity=0.465 Sum_probs=44.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccC--CCHHHHHHHHhC-CCceEEe
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLT--STKEDYDKLVSR-PRRIRYE 54 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a--~~~~~l~~la~~-~~~~~yE 54 (267)
||||||++....+++++||++|+||||+||.+++ .+++++.+++++ |.+|+||
T Consensus 62 vvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~e 117 (117)
T PF03447_consen 62 VVVECTSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYYE 117 (117)
T ss_dssp EEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEEG
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEeC
Confidence 7999988887788899999999999999999999 778888888764 6699997
No 13
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.49 E-value=0.00018 Score=65.81 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=56.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHhC-CCceEEeeeccccccchHHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVSR-PRRIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~~-~~~~~yEatVggGiPii~~l~~ 69 (267)
++||||+...+.++..++|++|+|||+.+..+++.. .+.+.+++++ +..+++.+...+|+++++..+.
T Consensus 64 vVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~~~~~ 134 (265)
T PRK13303 64 LVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALAAAKE 134 (265)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHHHHHh
Confidence 689999988777778999999999999999988754 4667777764 5688888888899999888764
No 14
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.88 E-value=0.018 Score=55.75 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=86.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccc---hHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPV---IASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPi---i~~l~~~~~~gd-- 75 (267)
+||.++.+.........||++||+|.+|||..+....+++.+++++ +.++ +|| -+.+..++..++
T Consensus 94 ~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i---------~PVDSEh~ai~q~l~~~~~~ 164 (385)
T PRK05447 94 VVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQI---------LPVDSEHSAIFQCLPGEKQE 164 (385)
T ss_pred EEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeE---------EEECHHHHHHHHHhcCCCcc
Confidence 5777787765556678999999999999999999999999888865 5566 688 778888886442
Q ss_pred cEEEEEEEeccc--hHHHhhcccCCCCHHHHHHHH-HHcCCCCCCcCCCCCCcchHHHHH--HHHH-HhCCCCCCCceEe
Q 040627 76 PVHRIVGSLSGT--LGYVMSEVEDGKPLSQVVKAA-KSLGYTEPDPRDDLSGMDVARKAL--ILAR-LLGMRINIDSIKI 149 (267)
Q Consensus 76 ~I~~i~GIlNGT--~NyILs~m~~g~~f~eal~~A-q~~GyaE~DP~~Dl~G~Daa~Kl~--ILa~-~~g~~i~~~dv~~ 149 (267)
+|.++-=-=||= -+|=+++|+ ..+.++|++.= |.+|- ...++--=.+.|.. |=|+ +||.+.+-=+|-+
T Consensus 165 ~i~~iilTASGGpFr~~~~~~l~-~vt~~~al~HPnW~MG~-----kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvI 238 (385)
T PRK05447 165 GVEKIILTASGGPFRDWPLEELA-NVTPEQALKHPNWSMGR-----KITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 238 (385)
T ss_pred ccceEEEecCCCcccCCCHHHHh-cCCHHHHhcCCCCCCCC-----ceeecHHHHhcchHHHHhHHHHcCCChhhEEEEE
Confidence 466665322332 344455554 78888888765 55541 22332212234543 3366 5886554333333
No 15
>PRK11579 putative oxidoreductase; Provisional
Probab=94.46 E-value=0.29 Score=45.91 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=56.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+...+||++||||.. -+|++...++.++| ++++....+.+-.--=-|.+..+++.+..|. +
T Consensus 67 ~V~I~tp~~~H~~~~~~al~aGkhVl~--EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~ 144 (346)
T PRK11579 67 LIVIPTPNDTHFPLAKAALEAGKHVVV--DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGE 144 (346)
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEE--eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCC
Confidence 467789888888888999999999995 45777777655555 4444333444434445689999999987652 5
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 145 i~~~~~~ 151 (346)
T PRK11579 145 VAYFESH 151 (346)
T ss_pred eEEEEEE
Confidence 6666544
No 16
>PRK10206 putative oxidoreductase; Provisional
Probab=93.37 E-value=0.57 Score=44.21 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=54.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||.. -+|++...++.++| ++++....+.+-..==-|-+..+++++..|. +
T Consensus 67 ~V~I~tp~~~H~~~~~~al~aGkhVl~--EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~g~iG~ 144 (344)
T PRK10206 67 LVVVCTHADSHFEYAKRALEAGKNVLV--EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGE 144 (344)
T ss_pred EEEEeCCchHHHHHHHHHHHcCCcEEE--ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHcCCCCC
Confidence 356689888888888999999999998 66788777666655 4333222222222222388999999987653 5
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++.-+
T Consensus 145 i~~i~~~~ 152 (344)
T PRK10206 145 IVEVESHF 152 (344)
T ss_pred eEEEEEEe
Confidence 66666543
No 17
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.62 E-value=0.78 Score=42.20 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=59.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCC--Cc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSG--DP 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~g--d~ 76 (267)
+|+-||+...+.+...+||++||||.. -+|+|...++.++| +++.......+=.---.|.+..+++++..| -+
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~--EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~ 147 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLC--EKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGE 147 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEE--cCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCc
Confidence 467788888888888999999999987 57889888776655 444433444444444459999999999765 26
Q ss_pred EEEEEEEecc
Q 040627 77 VHRIVGSLSG 86 (267)
Q Consensus 77 I~~i~GIlNG 86 (267)
|..+++-++.
T Consensus 148 v~~~~~~~~~ 157 (342)
T COG0673 148 VVSVQASFSR 157 (342)
T ss_pred eEEEEEEeec
Confidence 6666655443
No 18
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=91.49 E-value=0.35 Score=44.42 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=43.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHh
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRI 70 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~ 70 (267)
+||+|++...+.+...++|++|+||+..+...++ ..+++.++++ ++.++..-.--.+|+ +.++..
T Consensus 70 ~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~-~~~~L~~~A~~~g~~l~v~sGa~~g~---d~l~~g 135 (271)
T PRK13302 70 IVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALL-RNEDLIDLARQNGGQIIVPTGALLGL---DAVTAA 135 (271)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCcEEEecchhHH-hHHHHHHHHHHcCCEEEEcchHHHhH---HHHHHH
Confidence 6899998887777779999999999986544443 3355555554 566766643333443 555443
No 19
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.45 E-value=0.33 Score=44.41 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=41.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGL 61 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGi 61 (267)
|+||||+.....+.++.++++|+|||..-.+.-....+++.+++++ +..+.|.....=|+
T Consensus 71 vVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv 131 (266)
T TIGR00036 71 VLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGV 131 (266)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHH
Confidence 6899997776777789999999999976654322235556666554 45666655554444
No 20
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=91.38 E-value=0.42 Score=43.61 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=48.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|++|++...+.++.+++|++|+||+......++.. .+++.+++++ +..+...+-..+|+ +.++... . .++.
T Consensus 64 vVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~---d~i~a~~-~-G~i~ 138 (265)
T PRK13304 64 LVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL---DGIKAAS-L-GEIK 138 (265)
T ss_pred EEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH---HHHHHHh-c-CCcc
Confidence 689999777666777999999999999776665432 4566666655 55776644333344 5554432 2 3455
Q ss_pred EEE
Q 040627 79 RIV 81 (267)
Q Consensus 79 ~i~ 81 (267)
++.
T Consensus 139 ~V~ 141 (265)
T PRK13304 139 SVT 141 (265)
T ss_pred EEE
Confidence 444
No 21
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=91.26 E-value=0.22 Score=49.20 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccc---hHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPV---IASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPi---i~~l~~~~~~gd-- 75 (267)
+||..+.+...-..-..||++||+|.+|||..+....+++..++++ +.++. || =+.|-.++. |.
T Consensus 152 iVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il---------PVDSEHsAIfQ~L~-g~~~ 221 (454)
T PLN02696 152 TVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL---------PADSEHSAIFQCIQ-GLPE 221 (454)
T ss_pred EEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe---------ecchhhHHHHHHcc-CCCc
Confidence 3555555543333348999999999999999999999999888764 44554 33 122333442 32
Q ss_pred -cEEEEEEEeccc--hHHHhhcccCCCCHHHHHHH
Q 040627 76 -PVHRIVGSLSGT--LGYVMSEVEDGKPLSQVVKA 107 (267)
Q Consensus 76 -~I~~i~GIlNGT--~NyILs~m~~g~~f~eal~~ 107 (267)
.|.+|.=-=||= -+|=+++|+ ..+.+|||+.
T Consensus 222 ~~v~kiiLTASGGpFr~~~~e~l~-~vT~~~ALkH 255 (454)
T PLN02696 222 GGLRRIILTASGGAFRDWPVEKLK-EVKVADALKH 255 (454)
T ss_pred cCccEEEEECCchhccCCCHHHHh-CCCHHHHhhC
Confidence 366665223331 244444554 7888888874
No 22
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.76 E-value=0.75 Score=41.82 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=46.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHhCCC-ceEE-eeeccccccchHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVSRPR-RIRY-ESTVGAGLPVIASLN 68 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~~~~-~~~y-EatVggGiPii~~l~ 68 (267)
++|||-+..-.-++..++|++|+||+-..-++++.. .+.+.++++.+. ++++ ++++ ||+=+++.+|
T Consensus 63 lvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAi-GGlD~l~aar 132 (255)
T COG1712 63 LVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAI-GGLDALAAAR 132 (255)
T ss_pred eeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccc-hhHHHHHHhh
Confidence 578998544444556999999999999999999964 355666777654 5554 5554 5666655554
No 23
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=89.72 E-value=0.3 Score=39.41 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=36.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEe
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYE 54 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yE 54 (267)
|+||+|..+.....++.++++|+++|+..-+.-....+++++++++ ..+.|.
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a 121 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIA 121 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEe
Confidence 7899994444456679999999999999888766666777776665 455543
No 24
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=89.13 E-value=0.65 Score=42.19 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=37.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGL 61 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGi 61 (267)
++||||+.+...+..+.++++|+|||..+-+......+++.+.+ ++..+.|.....=|.
T Consensus 63 vVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~~~~v~~s~n~s~g~ 121 (257)
T PRK00048 63 VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-KKIPVVIAPNFSIGV 121 (257)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-cCCCEEEECcchHHH
Confidence 68999977766777899999999999774333322344444433 444555544444333
No 25
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=88.86 E-value=0.85 Score=41.07 Aligned_cols=64 Identities=9% Similarity=0.151 Sum_probs=43.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCC-C---HHHHHHHHhC-CCceEEeeeccccccchHHHHHh
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTS-T---KEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRI 70 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~-~---~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~ 70 (267)
+|++||+...+.++..++|++||||+.- .+.|. . .+++.+++++ +.++.-- -|.+-.++.|+..
T Consensus 40 aVviatp~~~H~e~a~~aL~aGkhVl~~--s~gAlad~e~~~~l~~aA~~~g~~l~i~---sGai~g~d~l~a~ 108 (229)
T TIGR03855 40 IVVEAASQEAVKEYAEKILKNGKDLLIM--SVGALADRELRERLREVARSSGRKVYIP---SGAIGGLDALKAA 108 (229)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEE--CCcccCCHHHHHHHHHHHHhcCCEEEEC---hHHHHHHHHHHhc
Confidence 5899999998888889999999999993 34333 2 3445555554 4454433 2666666777653
No 26
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=87.61 E-value=0.9 Score=42.01 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=46.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHhCC-CceE-EeeeccccccchHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVSRP-RRIR-YESTVGAGLPVIASL 67 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~~~-~~~~-yEatVggGiPii~~l 67 (267)
+||||-+..-..++..+.|++|+|+|...-++++.. ++.+.++++++ .+++ -.++++ |+=.|++.
T Consensus 65 lVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAig-GlD~l~aa 133 (267)
T PRK13301 65 LVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIA-GLDYLQAV 133 (267)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHH-hHHHHHHh
Confidence 689999766666667999999999999999999963 56677777654 4444 455554 44444444
No 27
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.54 E-value=2.7 Score=32.59 Aligned_cols=42 Identities=31% Similarity=0.476 Sum_probs=35.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV 45 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la 45 (267)
+++-||+...+....+++|++|+||+. -+|++...+++++|.
T Consensus 65 ~V~I~tp~~~h~~~~~~~l~~g~~v~~--EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 65 AVIIATPPSSHAEIAKKALEAGKHVLV--EKPLALTLEEAEELV 106 (120)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTSEEEE--ESSSSSSHHHHHHHH
T ss_pred EEEEecCCcchHHHHHHHHHcCCEEEE--EcCCcCCHHHHHHHH
Confidence 467788888888888999999999987 478888888777765
No 28
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=81.79 E-value=2.2 Score=40.48 Aligned_cols=70 Identities=6% Similarity=-0.056 Sum_probs=44.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCC---CHHHHHHHHhC-CCceEEeee-ccccccchHHHHHhhc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTS---TKEDYDKLVSR-PRRIRYEST-VGAGLPVIASLNRILS 72 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~---~~~~l~~la~~-~~~~~yEat-VggGiPii~~l~~~~~ 72 (267)
+++-||++..+.+....+|++|+|||++ |-+-+. +.+.+.+++++ +....+.+= ==|-.+|.+++-+.+.
T Consensus 63 VViIctPs~th~~~~~~~L~aG~NVV~s-~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~l 137 (324)
T TIGR01921 63 VLILCMGSATDIPEQAPYFAQFANTVDS-FDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVL 137 (324)
T ss_pred EEEEcCCCccCHHHHHHHHHcCCCEEEC-CCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccC
Confidence 5677898887777789999999999999 554232 35666676775 333222211 1133456666655443
No 29
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=78.90 E-value=10 Score=36.85 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=88.9
Q ss_pred eEEEcCCChHHHHHH-HHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeecccccc-chHHHHHhhcCCCcEEE
Q 040627 2 AFVDCSASSETVEIL-TQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLP-VIASLNRILSSGDPVHR 79 (267)
Q Consensus 2 vvVd~t~~~~~~~~~-~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiP-ii~~l~~~~~~gd~I~~ 79 (267)
||||+|+-.+.+..+ ..|+.+|||||--|-.+=..-...|+..+.+. -+-|+.+-|.==- +.++++-.-+.|-+|..
T Consensus 104 vIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-GviyS~~~GDeP~~~mEL~efa~a~G~evv~ 182 (438)
T COG4091 104 VIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAA-GVIYSGGAGDEPSSCMELYEFASALGFEVVS 182 (438)
T ss_pred EEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhc-CeEEeccCCCCcHHHHHHHHHHHhcCCeEEe
Confidence 789999998886555 99999999999999988777788888887643 3445544443222 23333332234545444
Q ss_pred EEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCC
Q 040627 80 IVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRIN 143 (267)
Q Consensus 80 i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~ 143 (267)
.-==.|--.|| + .+=+..=+||.+.++.-.=-..-.+|.-++.-..++||..|...+
T Consensus 183 aGKGkNnpl~~--~-----a~Pdt~~eeA~r~~~n~~Ml~sF~DGsKtmvEMaavANaTGl~pd 239 (438)
T COG4091 183 AGKGKNNPLNI--D-----ANPDTYEEEAKRRNMNPRMLVSFQDGSKTMVEMAAVANATGLVPD 239 (438)
T ss_pred ccCCcCCCCcc--C-----CCCchHHHHHhhcCCChHHhhhhhcccHHHHHHHHHhcccCCCCC
Confidence 32112223333 1 122335568888888776667788999999999999998777543
No 30
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.23 E-value=22 Score=38.91 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=38.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeec
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTV 57 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatV 57 (267)
+||-|++..-+....+.|+++|+|||++. -......++.+.++ .++.+.-+.-+
T Consensus 651 aVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~Gl 705 (1042)
T PLN02819 651 VVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGL 705 (1042)
T ss_pred EEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCcc
Confidence 57889988777777899999999999995 33333445555554 45566666543
No 31
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=61.65 E-value=9.4 Score=36.45 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHcCCcEEccCCcccCC-CHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEE
Q 040627 8 ASSETVEILTQAVDLGCCIVLANKKPLTS-TKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHR 79 (267)
Q Consensus 8 ~~~~~~~~~~~aL~~G~hVVTaNK~~~a~-~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~ 79 (267)
++..+.+..++||++||||.. =| |++. ..+++.++++++...... .-=-|-+..+|+.+..|..|..
T Consensus 75 P~~~H~e~a~~aL~aGkHVL~-EK-Pla~~Ea~el~~~A~~~g~~l~v---~~f~p~~~~vr~~i~~~~~i~~ 142 (343)
T TIGR01761 75 VGGQGSALARALLARGIHVLQ-EH-PLHPRDIQDLLRLAERQGRRYLV---NTFYPHLPAVRRFIEYARQLHH 142 (343)
T ss_pred CCccHHHHHHHHHhCCCeEEE-cC-CCCHHHHHHHHHHHHHcCCEEEE---EecCHHHHHHHHHHHcchhHhh
Confidence 345566777999999999985 34 4442 233444445443333332 3356888888888766533333
No 32
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=61.27 E-value=9.7 Score=35.46 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=93.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCccc----CCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPL----TSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~----a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
++++||+...+.++...++++||||+- +|-+. ....=-++++.+ .++.+ -..--...+|++-.+++....+ -
T Consensus 67 aV~iaTp~~~H~e~a~~al~aGk~VId-ekPa~~~plvvp~VN~~~~~~~~~~~i-v~c~~~atip~~~al~r~~d~~-~ 143 (285)
T TIGR03215 67 IVFDATSAKAHARHARLLAELGKIVID-LTPAAIGPYVVPAVNLDEHLDAPNVNM-VTCGGQATIPIVAAISRVAPVH-Y 143 (285)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCEEEE-CCccccCCccCCCcCHHHHhcCcCCCE-EEcCcHHHHHHHHHHHHhhccc-c
Confidence 589999998888888999999999984 33322 121111333332 22221 1222345899999999876432 2
Q ss_pred EEEEEEEeccch-HHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCc-eEeeecCC
Q 040627 77 VHRIVGSLSGTL-GYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDS-IKIESLYP 154 (267)
Q Consensus 77 I~~i~GIlNGT~-NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~d-v~~~gi~p 154 (267)
+.=+.-+-+++. -+=-..|+ .|.+.-+.+++ + .|--..-|..|.-+=..-++.+.| |.+..
T Consensus 144 ~~iv~ti~s~S~g~g~r~~id---el~~~t~~~~~----~-------~gG~~~~k~~~~~~~a~p~~~~~~~~~~~~--- 206 (285)
T TIGR03215 144 AEIVASIASRSAGPGTRANID---EFTETTSRALE----Q-------VGGAKKGKAIIILNPAEPPLMMRDTIYCLV--- 206 (285)
T ss_pred EEEEEEEEeeccCCCchhHHH---HHHHHHHHHHH----H-------cCCcccceEEEEecCCCCCccceeeEEEec---
Confidence 221122222221 11111111 12222222211 1 233334455554442222333322 22211
Q ss_pred CCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHh--CCCeeEEEEEEECCeEEEEEEeecCCCCcccccCC
Q 040627 155 EEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASL--NGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGS 223 (267)
Q Consensus 155 ~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~--~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~ 223 (267)
...+.+.+ .....++++.-++ -||+||.=-.+++.+++|-++.-...|.|=.-.|+
T Consensus 207 -----~~~~~~~~--------~~~~~~~~~~~~~~vpgy~~~~~~~~~~~~~~~~~~v~~~~~~lp~~agn 264 (285)
T TIGR03215 207 -----EDPDEDAI--------EASVEEMVAEVQKYVPGYRLKQEPQFDGLRVSVFLEVEGAGDYLPKYAGN 264 (285)
T ss_pred -----CCCCHHHH--------HHHHHHHHHHHHhhCCCEEeeeceEEeCcEEEEEEEEecCccccccCCCc
Confidence 12222322 2333445555444 68888877777777888888888887777654443
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=58.35 E-value=3.9 Score=35.50 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=28.3
Q ss_pred hHHHhhcc--cCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHH
Q 040627 88 LGYVMSEV--EDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKA 131 (267)
Q Consensus 88 ~NyILs~m--~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl 131 (267)
+.+||-+| +.|+|++|--+ |||.||..|.+ +|-..|-
T Consensus 31 aG~iFR~~A~e~gmsl~ef~~------~AE~~p~iD~~-iD~rq~e 69 (179)
T COG1102 31 AGTIFREMARERGMSLEEFSR------YAEEDPEIDKE-IDRRQKE 69 (179)
T ss_pred ccHHHHHHHHHcCCCHHHHHH------HHhcCchhhHH-HHHHHHH
Confidence 34799999 46999999877 88999999975 4444443
No 34
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=49.16 E-value=22 Score=32.65 Aligned_cols=71 Identities=21% Similarity=0.436 Sum_probs=50.9
Q ss_pred EEcCCChHHHHHHHHHHHcCCc--EEccCCcc--cCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEE-
Q 040627 4 VDCSASSETVEILTQAVDLGCC--IVLANKKP--LTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH- 78 (267)
Q Consensus 4 Vd~t~~~~~~~~~~~aL~~G~h--VVTaNK~~--~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~- 78 (267)
||++.-++....+...++++++ |||+|-.. .|.+-.++.++-++... -+..|+||+-..|.++ |....
T Consensus 17 v~~~~~~~~~~~i~~~~~~~~~~~vv~~N~e~~~~a~~d~e~~~~i~~A~l-----i~pDG~gvV~~ar~~~--g~~~~~ 89 (253)
T COG1922 17 VDNVTWDEAVALILGRIEQGKPTTVVTLNAEKVLLARKDPEFREILNQADL-----ILPDGIGVVRAARRLL--GQPLPE 89 (253)
T ss_pred eecCCHHHHHHHHHHHHhcCCccEEEEcCHHHHHHhccCHHHHHHHhhcCE-----EccCchhHHHHHHHHh--CccCcc
Confidence 6777777777788899999998 99999654 44455577776544322 3568999999998776 56664
Q ss_pred EEE
Q 040627 79 RIV 81 (267)
Q Consensus 79 ~i~ 81 (267)
++.
T Consensus 90 rv~ 92 (253)
T COG1922 90 RVA 92 (253)
T ss_pred cCC
Confidence 544
No 35
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=44.35 E-value=25 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLAN 30 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaN 30 (267)
++++||+...+.++.+.++++|+||+--.
T Consensus 73 iVf~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 73 IVFDATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 58899988877777899999999998644
No 36
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.71 E-value=1.5e+02 Score=28.56 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=54.9
Q ss_pred cCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHH---HHhCCCceEEeeeccccccchHHHHHhhcCCC--cEEEE
Q 040627 6 CSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDK---LVSRPRRIRYESTVGAGLPVIASLNRILSSGD--PVHRI 80 (267)
Q Consensus 6 ~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~---la~~~~~~~yEatVggGiPii~~l~~~~~~gd--~I~~i 80 (267)
.|+...+.+....+|++||| |-+-| |++...++.++ +|+.+.-++-|+.-.==.|....+|+++..|. +|+.+
T Consensus 79 ~~~~~qH~evv~l~l~~~K~-VL~EK-Pla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~~~~~Gdvk~v 156 (351)
T KOG2741|consen 79 STPNPQHYEVVMLALNKGKH-VLCEK-PLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLSSGVLGDVKSV 156 (351)
T ss_pred CCCCccHHHHHHHHHHcCCc-EEecc-cccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHhccccccceEE
Confidence 34445556667999999999 56666 55665554444 45555567777777777899999999986332 56666
Q ss_pred EEEeccchHHH
Q 040627 81 VGSLSGTLGYV 91 (267)
Q Consensus 81 ~GIlNGT~NyI 91 (267)
+= ..+.+|.
T Consensus 157 ~~--~~~f~~~ 165 (351)
T KOG2741|consen 157 EV--EFGFPFP 165 (351)
T ss_pred EE--ecCCCcc
Confidence 63 3444444
No 37
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.43 E-value=74 Score=30.08 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccch---HHHHHhhcCCCcE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVI---ASLNRILSSGDPV 77 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii---~~l~~~~~~gd~I 77 (267)
|||.|.+........+.|++.|+|.|...= +......+++.++ ++..+..++-..-|+.=+ ..++++-..++++
T Consensus 70 vVin~~gp~~~~~v~~~~i~~g~~yvD~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v 147 (386)
T PF03435_consen 70 VVINCAGPFFGEPVARACIEAGVHYVDTSY--VTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDAEGDEV 147 (386)
T ss_dssp EEEE-SSGGGHHHHHHHHHHHT-EEEESS---HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEE
T ss_pred EEEECCccchhHHHHHHHHHhCCCeeccch--hHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhhhcccc
Confidence 689999777445556999999999999110 1223445555554 677888887666665522 3334443345588
Q ss_pred EEEEEEeccch
Q 040627 78 HRIVGSLSGTL 88 (267)
Q Consensus 78 ~~i~GIlNGT~ 88 (267)
.++. +..|=.
T Consensus 148 ~~~~-~~~g~~ 157 (386)
T PF03435_consen 148 ESVD-IYVGGL 157 (386)
T ss_dssp EEEE-EEEEEE
T ss_pred eEEE-EEEccc
Confidence 8887 655544
No 38
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=41.94 E-value=29 Score=32.96 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=44.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCC--cccCC-------CHHHHHHHHhCCCceEEeeeccccccchHHHHHhh
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANK--KPLTS-------TKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRIL 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK--~~~a~-------~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~ 71 (267)
+++|||+.....+..+.++++|+.||...- ...+. .++.+ ...+.-=--.++.-+=.|++..|++.+
T Consensus 81 VVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~v~~vN~~~~---~~~~~v~~~sCtT~~l~~~l~~L~~~f 156 (341)
T PRK04207 81 IVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSFNALANYEEA---LGKDYVRVVSCNTTGLCRTLCALDRAF 156 (341)
T ss_pred EEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcEEeeECHHHh---CCCCcEEccChHHHHHHHHHHHHHHhc
Confidence 689999888777777999999999997763 32111 23322 212211123777788889999998754
No 39
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=37.89 E-value=1.6e+02 Score=27.13 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=58.4
Q ss_pred eEEEcCCChH-HHHHH-HHHHHcCCcEEccCCcccCCCHHHHHHHHhCCC-ceEEeeeccccccchHHHHHhhc-CCCcE
Q 040627 2 AFVDCSASSE-TVEIL-TQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPR-RIRYESTVGAGLPVIASLNRILS-SGDPV 77 (267)
Q Consensus 2 vvVd~t~~~~-~~~~~-~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~-~~~yEatVggGiPii~~l~~~~~-~gd~I 77 (267)
++||||..+. ..+.+ ..+-++|.+.|.+ |++..... ++++. .+. ++|--..+..++.++. -|.++
T Consensus 88 ivvd~sT~~p~~~~~~~~~~~~~G~~~vda---PVsGg~~~----a~~g~l~~~----~gG~~~~~~~~~p~l~~~g~~~ 156 (292)
T PRK15059 88 TIVDMSSISPIETKRFARQVNELGGDYLDA---PVSGGEIG----AREGTLSIM----VGGDEAVFERVKPLFELLGKNI 156 (292)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEe---cCCCCHHH----HhcCcEEEE----EcCCHHHHHHHHHHHHHHcCCc
Confidence 6899986653 34555 6666789998886 77775432 23443 333 3444444555555332 36788
Q ss_pred EEEEEEeccch-----HHHhhcccCCCCHHHHHHHHHHcCC
Q 040627 78 HRIVGSLSGTL-----GYVMSEVEDGKPLSQVVKAAKSLGY 113 (267)
Q Consensus 78 ~~i~GIlNGT~-----NyILs~m~~g~~f~eal~~Aq~~Gy 113 (267)
..+-+.=+|+. |+++.-+ =..+.|++.-|++.|.
T Consensus 157 ~~~G~~G~g~~~Kl~~N~l~~~~--~~a~~Ea~~la~~~Gl 195 (292)
T PRK15059 157 TLVGGNGDGQTCKVANQIIVALN--IEAVSEALLFASKAGA 195 (292)
T ss_pred EEeCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC
Confidence 88876534432 5555322 1237778877777765
No 40
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=37.28 E-value=48 Score=32.37 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccch---HHHHHhhcCCC---cEEEEEEEecc
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVI---ASLNRILSSGD---PVHRIVGSLSG 86 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii---~~l~~~~~~gd---~I~~i~GIlNG 86 (267)
.....||++||.|-.|||.-+....+.+..++++ +.++. ||= +.|=+++. |. +|.+|.=-=||
T Consensus 101 ~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~ii---------PVDSEHsAIfQ~L~-~~~~~~v~kiiLTASG 170 (383)
T PRK12464 101 LPTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLI---------PVDSEHSAIFQCLN-GENNKEIDKLIVTASG 170 (383)
T ss_pred HHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEE---------eechhHHHHHHHcc-CCCcccccEEEEECCC
Confidence 4458999999999999999999999999887764 44443 331 23333442 33 36666522233
Q ss_pred c--hHHHhhcccCCCCHHHHHHH
Q 040627 87 T--LGYVMSEVEDGKPLSQVVKA 107 (267)
Q Consensus 87 T--~NyILs~m~~g~~f~eal~~ 107 (267)
= .+|=+++|+ ..+.+|||+.
T Consensus 171 GpFr~~~~e~l~-~vT~~~AL~H 192 (383)
T PRK12464 171 GAFRDKTREEMA-TLTAKDALKH 192 (383)
T ss_pred cccCCCCHHHHh-CCCHHHHhcC
Confidence 1 344445554 7888888874
No 41
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=36.96 E-value=32 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.3
Q ss_pred EeccchHHHhhcccCCCCHHHHHHHHHHc
Q 040627 83 SLSGTLGYVMSEVEDGKPLSQVVKAAKSL 111 (267)
Q Consensus 83 IlNGT~NyILs~m~~g~~f~eal~~Aq~~ 111 (267)
.||+|..||+..++.+.|.++.++.-.+.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 69999999999998889999999876554
No 42
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=34.90 E-value=60 Score=31.74 Aligned_cols=84 Identities=23% Similarity=0.216 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccc---hHHHHHhhcCC---CcEEEEEEEecc
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPV---IASLNRILSSG---DPVHRIVGSLSG 86 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPi---i~~l~~~~~~g---d~I~~i~GIlNG 86 (267)
.....||++||.|-.|||.-+....+.+..++++ +.++. || =+.|=.++..| .+|.+|.=-=||
T Consensus 108 ~pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~---------PVDSEHsAIfQ~L~~g~~~~~v~kiiLTASG 178 (389)
T TIGR00243 108 LPTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLL---------PVDSEHNAIFQSLQHGLEELGVVSIILTASG 178 (389)
T ss_pred HHHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEE---------eecchHhHHHHHcccCCCcccccEEEEECCC
Confidence 4458999999999999999999999998877764 43443 33 12233344223 246666522233
Q ss_pred c--hHHHhhcccCCCCHHHHHHH
Q 040627 87 T--LGYVMSEVEDGKPLSQVVKA 107 (267)
Q Consensus 87 T--~NyILs~m~~g~~f~eal~~ 107 (267)
= .++=+++|+ ..+.+|||+.
T Consensus 179 GpFr~~~~e~l~-~vt~~~AL~H 200 (389)
T TIGR00243 179 GAFRDTPLEDLP-TVTPQQALKH 200 (389)
T ss_pred cccCCCCHHHHh-CCCHHHHhcC
Confidence 1 244444554 7888888864
No 43
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=33.26 E-value=13 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=19.3
Q ss_pred HcCCcEEccCCcccCCCHHHHHHH
Q 040627 21 DLGCCIVLANKKPLTSTKEDYDKL 44 (267)
Q Consensus 21 ~~G~hVVTaNK~~~a~~~~~l~~l 44 (267)
.||+.|++.||..+..-+..++..
T Consensus 6 DRGcdvia~~~~~i~~ly~~y~~W 29 (38)
T PF13021_consen 6 DRGCDVIANNKERIRPLYEKYNDW 29 (38)
T ss_pred CCCcEEeeCCHHHHHHHHHHHHHH
Confidence 489999999999888777766653
No 44
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=32.20 E-value=1.7e+02 Score=28.59 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=48.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
++|.|.+.......++.|++.|+|+|+.+--.-. +..++..++ .+.....++=+.=|+==+=.-+......|+|++|
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~--~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si 148 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP--PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESI 148 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch--hhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEE
Confidence 5777887776666679999999998765433333 255555554 4557777777766664333333322234577776
Q ss_pred E
Q 040627 81 V 81 (267)
Q Consensus 81 ~ 81 (267)
.
T Consensus 149 ~ 149 (389)
T COG1748 149 D 149 (389)
T ss_pred E
Confidence 5
No 45
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=31.68 E-value=56 Score=25.70 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=24.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKP 33 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~ 33 (267)
+++.|+++....+...+++++|+.||...-..
T Consensus 69 vvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 69 VVFLALPHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp EEEE-SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred EEEecCchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 67889987767777789999999999876543
No 46
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.33 E-value=3.4e+02 Score=23.02 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=35.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcc-----cCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKP-----LTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~-----~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
+++++.+..+....++.+.+.|.+.|+.+-.- .-...+.++++.+.-....+ .|-||+ -.+++++++..|..
T Consensus 105 ~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i--~v~GGI-~~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 105 VQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARV--AVAGGI-NLDTIPDVIKLGPD 181 (206)
T ss_pred EEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcE--EEECCc-CHHHHHHHHHcCCC
Confidence 45564333334445666677788877765211 11233445555442222223 333666 44666666655543
No 47
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.55 E-value=1e+02 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=46.8
Q ss_pred CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHH
Q 040627 1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~ 69 (267)
+|+||-|.-+-.-+.++.++++|+++|..--+.- .++++++++. +..+.|-....=|+=++.-+-.
T Consensus 82 ~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~---~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~ 148 (286)
T PLN02775 82 LIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGD---RDRLLKDVEESGVYAVIAPQMGKQVVAFQAAME 148 (286)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 3899999666556678999999999998877743 3456666554 4577777777666665554443
No 48
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=29.40 E-value=68 Score=29.87 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=43.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLN 68 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~ 68 (267)
|+||-|..+-.-..++.++++|+++|..-.+.-.. +++++.+ .+..+.|.....-|+=++.-+-
T Consensus 72 VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~---~~~~l~~~~~i~~l~apNfSiGv~ll~~~~ 136 (275)
T TIGR02130 72 ICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDRE---ALAKLVADAKHPAVIAPNMAKQIVAFLAAI 136 (275)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHH---HHHHHHHhcCCCEEEECcccHHHHHHHHHH
Confidence 78999966655667899999999999988875444 4444443 2356666666665555544433
No 49
>PRK06256 biotin synthase; Validated
Probab=29.35 E-value=2.1e+02 Score=26.60 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCC---cEEccCCcccCCCHHHHHHHHh---CCCceEEeeeccccccchHHHHHhhcCCCcEEEEEEEec
Q 040627 12 TVEILTQAVDLGC---CIVLANKKPLTSTKEDYDKLVS---RPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLS 85 (267)
Q Consensus 12 ~~~~~~~aL~~G~---hVVTaNK~~~a~~~~~l~~la~---~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i~GIlN 85 (267)
..+.++.+.+.|. +++++...+.....+.+.++.+ +...+.+.++ .|+.-=+.++.+...|.. ++..=+.
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~--~g~l~~e~l~~LkeaG~~--~v~~~lE 171 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICAC--LGLLTEEQAERLKEAGVD--RYNHNLE 171 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEec--CCcCCHHHHHHHHHhCCC--EEecCCc
Confidence 3445577777885 4667777665442233333322 2233444444 455555677777666533 3332244
Q ss_pred cchHHHhhcccCCCCHH---HHHHHHHHcCCCCCCcC--CCC-CCcchHHHHHHHHHHhCCCCCCCceEeeecCC
Q 040627 86 GTLGYVMSEVEDGKPLS---QVVKAAKSLGYTEPDPR--DDL-SGMDVARKALILARLLGMRINIDSIKIESLYP 154 (267)
Q Consensus 86 GT~NyILs~m~~g~~f~---eal~~Aq~~GyaE~DP~--~Dl-~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p 154 (267)
+ +.=++.+|..+.+++ ++++.|++.|+- -... .-+ +-++-..++.-..+.++ ++.|.+..+.|
T Consensus 172 t-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~-v~~~~I~GlgEt~ed~~~~~~~l~~l~----~~~v~i~~l~P 240 (336)
T PRK06256 172 T-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIE-PCSGGIIGMGESLEDRVEHAFFLKELD----ADSIPINFLNP 240 (336)
T ss_pred c-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCe-eccCeEEeCCCCHHHHHHHHHHHHhCC----CCEEeeccccc
Confidence 4 666788887777886 778899999972 2211 111 11223334333334343 45566666655
No 50
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=28.82 E-value=71 Score=31.13 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=66.4
Q ss_pred HHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEE---eeeccccccchHHHHHhhcCCCcEEEEEEEeccc---
Q 040627 15 ILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRY---ESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGT--- 87 (267)
Q Consensus 15 ~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~y---EatVggGiPii~~l~~~~~~gd~I~~i~GIlNGT--- 87 (267)
.-..|+++||.+--|||..+......+.+++++ |.++.. |=+ -|++.|+.-. -+.|.+|- |.++
T Consensus 105 pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~-----AifQ~L~~~~--~~~v~~ii--LTASGGp 175 (385)
T COG0743 105 PTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHN-----AIFQCLQGET--QKGVKKII--LTASGGP 175 (385)
T ss_pred HHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhH-----HHHHHcCccc--cCcceEEE--EecCCCC
Confidence 347999999999999999999999988888765 445531 110 0233333221 12455553 4333
Q ss_pred -hHHHhhcccCCCCHHHHHHHH-HHcCCCCCCcCCCCCCcchHHHHH--HHHH-HhCCCCCCCceEe
Q 040627 88 -LGYVMSEVEDGKPLSQVVKAA-KSLGYTEPDPRDDLSGMDVARKAL--ILAR-LLGMRINIDSIKI 149 (267)
Q Consensus 88 -~NyILs~m~~g~~f~eal~~A-q~~GyaE~DP~~Dl~G~Daa~Kl~--ILa~-~~g~~i~~~dv~~ 149 (267)
-++=+.+|+ .++-++|++.= |.|| +..-|+---.+.|.+ |=|+ +||.+.+.=||-+
T Consensus 176 FR~~~~~~L~-~VT~eqAl~HPnWsMG-----~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvI 236 (385)
T COG0743 176 FRDKSLEELA-NVTPEQALKHPNWSMG-----RKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 236 (385)
T ss_pred cCCCCHHHHc-cCCHHHHhcCCCCCCC-----CcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEE
Confidence 233444444 67777777641 1111 222333333445543 3466 4777655444444
No 51
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=28.23 E-value=71 Score=30.21 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=25.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKP 33 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~ 33 (267)
+++-|+++....+...+++++|+|||...-..
T Consensus 71 ~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 71 VVFLALPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEEECCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 45668988877777799999999999877543
No 52
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=46 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCC
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPR 49 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~ 49 (267)
..+++||++|++|||.=-..++...+..+.+.+.|+
T Consensus 88 ~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~ 123 (339)
T COG3367 88 EYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGV 123 (339)
T ss_pred HHHHHHHHhCchhhhhhHHHhhcChHHHHHHHHcCC
Confidence 346999999999999998887766666665556665
No 53
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=26.12 E-value=18 Score=30.96 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCC--ceEEeeeccccccchHHHHH
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPR--RIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~--~~~yEatVggGiPii~~l~~ 69 (267)
..++++|+.|.+++--|| +-+....++ .-.+..++..||||+-.+..
T Consensus 84 ~~l~~al~~~~DLlivNk---------FGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 84 AALRRALAEGADLLIVNK---------FGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHHHhcCCCEEEEcc---------cHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 457999999999999999 333333444 44578899999999876654
No 54
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=25.93 E-value=57 Score=26.51 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=49.5
Q ss_pred HHHHHHHcCCcEEccCCccc----CCCHHHHHHHHh-CCCceEEeeecccccc---chHHHHHhhcCCC-cEEEEEEEec
Q 040627 15 ILTQAVDLGCCIVLANKKPL----TSTKEDYDKLVS-RPRRIRYESTVGAGLP---VIASLNRILSSGD-PVHRIVGSLS 85 (267)
Q Consensus 15 ~~~~aL~~G~hVVTaNK~~~----a~~~~~l~~la~-~~~~~~yEatVggGiP---ii~~l~~~~~~gd-~I~~i~GIlN 85 (267)
.+...-+.|+..|--|...- .-......+.++ .+..+.+ -.|..+-+ -+..+++.+...+ .|.-- +=+
T Consensus 19 d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~-iPv~~~~~~~~~v~~f~~~~~~~~~pvL~H--C~s 95 (135)
T TIGR01244 19 DAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHH-QPVTAGDITPDDVETFRAAIGAAEGPVLAY--CRS 95 (135)
T ss_pred HHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEE-eecCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCC
Confidence 45555667888887776542 112333344433 3443321 12222322 2334444443211 22211 223
Q ss_pred cc---hHHHhhcccCCCCHHHHHHHHHHcCCCC
Q 040627 86 GT---LGYVMSEVEDGKPLSQVVKAAKSLGYTE 115 (267)
Q Consensus 86 GT---~NyILs~m~~g~~f~eal~~Aq~~GyaE 115 (267)
|+ .=|-|.....|++.++++++|++.||-=
T Consensus 96 G~Rt~~l~al~~~~~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 96 GTRSSLLWGFRQAAEGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 43 2223344457999999999999999953
No 55
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=25.49 E-value=1.4e+02 Score=27.69 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=46.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASL 67 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l 67 (267)
|+||-|...-....++.++++|+..|-.-.+.-....+.+++++++ ..+.+.+...=|+=++.-+
T Consensus 72 V~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~-v~vv~a~NfSiGvnll~~l 136 (266)
T COG0289 72 VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK-VPVVIAPNFSLGVNLLFKL 136 (266)
T ss_pred EEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh-CCEEEeccchHHHHHHHHH
Confidence 7899996665567789999999999988888777777777777766 5555555554454444333
No 56
>PLN02389 biotin synthase
Probab=24.79 E-value=4.6e+02 Score=25.33 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCc---EEccCCcccCC--CHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEEEEEeccch
Q 040627 14 EILTQAVDLGCC---IVLANKKPLTS--TKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTL 88 (267)
Q Consensus 14 ~~~~~aL~~G~h---VVTaNK~~~a~--~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i~GIlNGT~ 88 (267)
+..+++.+.|.. +||+-+...-. .++.+.++.+.-.....+.++.-|+-.-+.++.+... -+.++.+.|.++-
T Consensus 123 ~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeA--Gld~~~~~LeTs~ 200 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEA--GLTAYNHNLDTSR 200 (379)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHc--CCCEEEeeecCCh
Confidence 444566666654 45543332221 2344433332111112234577788888999988754 5667888888853
Q ss_pred HHHhhcccCCCCHH---HHHHHHHHcCC
Q 040627 89 GYVMSEVEDGKPLS---QVVKAAKSLGY 113 (267)
Q Consensus 89 NyILs~m~~g~~f~---eal~~Aq~~Gy 113 (267)
+ .+.++..+.+|+ ++++.|++.|+
T Consensus 201 ~-~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 201 E-YYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred H-HhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 3 445565566898 88899999997
No 57
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=24.52 E-value=17 Score=27.32 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=27.3
Q ss_pred eccccccchHHHHHhhcCCCcEEEEEEEeccchHHHhhcccCCCCHHHHHH
Q 040627 56 TVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVK 106 (267)
Q Consensus 56 tVggGiPii~~l~~~~~~gd~I~~i~GIlNGT~NyILs~m~~g~~f~eal~ 106 (267)
.+.+|+|+.+.++..... .+ .|-+.--...+..+|+.|.++++|++
T Consensus 8 ll~sG~~l~~al~~~~~~-~~----~~~l~~~~~~~~~~l~~G~~~~~al~ 53 (124)
T PF00482_consen 8 LLKSGIPLSEALEILAEE-SD----SGPLREELQKIRRRLRNGGSLEEALE 53 (124)
T ss_dssp HHHCT--HHHHHHHHCCC--S----SHHHHHHHHHHHHHHHTT--HHHHHC
T ss_pred HHHcCCCHHHHHHHHHhH-cC----CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356899999999976532 22 22333334555666778999999998
No 58
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=24.18 E-value=74 Score=27.37 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHH-HHHHHcCCcEEccCCcccCCCHH----HHHHHHhCCCceE
Q 040627 13 VEIL-TQAVDLGCCIVLANKKPLTSTKE----DYDKLVSRPRRIR 52 (267)
Q Consensus 13 ~~~~-~~aL~~G~hVVTaNK~~~a~~~~----~l~~la~~~~~~~ 52 (267)
++-+ .++|++|+|..+.|-.+-+.... +++.+.+.|+.|+
T Consensus 111 GRVLAqRCLqsGI~fm~~~~t~ea~~~s~~q~l~~a~~e~Gv~lk 155 (188)
T KOG3333|consen 111 GRVLAQRCLQSGINFMVYQPTPEAAASSSMQRLQSAMTEGGVVLK 155 (188)
T ss_pred HHHHHHHHHHhCcceeccCCChhhccchHHHHHHHHHHhCCeeec
Confidence 3444 88999999999999544444333 3344444554443
No 59
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.50 E-value=4.9e+02 Score=23.35 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=55.0
Q ss_pred HHHHHHHcCC---cEEccCCcccCCC-HHHHHHHHh--CCCceEEeeeccccccchHHHHHhhcCCCcEEEEEEEeccch
Q 040627 15 ILTQAVDLGC---CIVLANKKPLTST-KEDYDKLVS--RPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTL 88 (267)
Q Consensus 15 ~~~~aL~~G~---hVVTaNK~~~a~~-~~~l~~la~--~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i~GIlNGT~ 88 (267)
.++++-+.|. +++++...+.-.. .+.+.++.+ ....+....++ |..--+.++.+..+|...-.+. +. +.
T Consensus 70 ~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~--g~~~~e~l~~Lk~aG~~~v~i~--~E-~~ 144 (296)
T TIGR00433 70 EARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL--GLLDPEQAKRLKDAGLDYYNHN--LD-TS 144 (296)
T ss_pred HHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC--CCCCHHHHHHHHHcCCCEEEEc--cc-CC
Confidence 3444455675 4667666655433 334444432 12233333443 5666788888776775554443 55 45
Q ss_pred HHHhhcccCCCCHHH---HHHHHHHcCC
Q 040627 89 GYVMSEVEDGKPLSQ---VVKAAKSLGY 113 (267)
Q Consensus 89 NyILs~m~~g~~f~e---al~~Aq~~Gy 113 (267)
.=++.++..+.++++ +++.+++.|+
T Consensus 145 ~~~~~~i~~~~s~~~~~~ai~~l~~~Gi 172 (296)
T TIGR00433 145 QEFYSNIISTHTYDDRVDTLENAKKAGL 172 (296)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHcCC
Confidence 557777766667765 5888999897
No 60
>PHA00368 internal virion protein D
Probab=23.37 E-value=26 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.9
Q ss_pred EeccchHHHhhcccC
Q 040627 83 SLSGTLGYVMSEVED 97 (267)
Q Consensus 83 IlNGT~NyILs~m~~ 97 (267)
+||||+||||+.=+.
T Consensus 986 ~ln~ttNYilDa~Rq 1000 (1315)
T PHA00368 986 LLNGTTNYILDAARQ 1000 (1315)
T ss_pred HhccchHHHHHHHhh
Confidence 589999999976443
No 61
>PRK04151 IMP cyclohydrolase; Provisional
Probab=22.06 E-value=73 Score=28.27 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred Eeccc-hHHHhhcccCCCCHHHHHHHH
Q 040627 83 SLSGT-LGYVMSEVEDGKPLSQVVKAA 108 (267)
Q Consensus 83 IlNGT-~NyILs~m~~g~~f~eal~~A 108 (267)
+=||+ |-.|-.+|+.|.+|.|||..+
T Consensus 70 VtNG~qTDtI~e~l~~g~~~rdALa~s 96 (197)
T PRK04151 70 VTNGSHTDPIAEKLELGYPARDALAYS 96 (197)
T ss_pred EcCCCcchHHHHHHHcCCCHHHHHHhh
Confidence 45776 899999999999999999876
No 62
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=21.51 E-value=5.9e+02 Score=24.68 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=48.3
Q ss_pred CChHHHHHH-HHHHHcCCcEEccCCcccCCCHHHHHHHH-hCCCceE---EeeeccccccchHHHHHhhc-CCCcEEEEE
Q 040627 8 ASSETVEIL-TQAVDLGCCIVLANKKPLTSTKEDYDKLV-SRPRRIR---YESTVGAGLPVIASLNRILS-SGDPVHRIV 81 (267)
Q Consensus 8 ~~~~~~~~~-~~aL~~G~hVVTaNK~~~a~~~~~l~~la-~~~~~~~---yEatVggGiPii~~l~~~~~-~gd~I~~i~ 81 (267)
+|.+..+.| ..||+.|+..|-+--..++... ++.+++ +++..+. +- |=.|.+++=+.|-.++. .|-++.++.
T Consensus 134 Gs~~A~~~YA~AAl~aG~afVN~~P~~ia~~p-~~a~~f~e~glPi~GDD~K-sq~GaTi~h~vLa~lf~~Rgl~v~~~y 211 (351)
T TIGR03450 134 GSEEADKFYAQCAIDAGVAFVNALPVFIASDP-EWAKKFTDAGVPIVGDDIK-SQVGATITHRVLAKLFEDRGVRLDRTM 211 (351)
T ss_pred chHHHHHHHHHHHHHcCCceEeccCccccCCH-HHHHHHHHCCCCEeccccc-ccCCCchHHHHHHHHHHHcCCceeeEE
Confidence 445556777 8999999999988888888544 455554 4554333 22 22367778788877663 566666665
Q ss_pred E
Q 040627 82 G 82 (267)
Q Consensus 82 G 82 (267)
.
T Consensus 212 q 212 (351)
T TIGR03450 212 Q 212 (351)
T ss_pred E
Confidence 3
No 63
>PF15594 Imm30: Immunity protein 30
Probab=20.86 E-value=3.4e+02 Score=21.61 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEeecCCCCcccccCCCeEEEEEeeeeCCcceEEEeCC
Q 040627 208 IQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAG 245 (267)
Q Consensus 208 p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~i~G~G 245 (267)
....|.+.|-....+..|.+.++-...+-..+.+.|-|
T Consensus 42 ~~~~p~~~P~kW~~~~~n~~~v~l~F~~V~~l~i~g~~ 79 (124)
T PF15594_consen 42 TKEFPDNPPKKWSPNKFNAVYVTLSFFDVSDLEISGWG 79 (124)
T ss_pred ECCCCCCCCceeccCCCeEEEEEEEEEEeeEEEEEecc
Confidence 34566666666666667776655555554455665543
No 64
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.55 E-value=65 Score=30.38 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CC
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PR 49 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~ 49 (267)
..+.+|+++|++||+-=-..++. .+++.+++++ |+
T Consensus 53 ~~i~~Ai~~Gl~IvsGLH~~L~d-dpel~~~A~~~g~ 88 (301)
T PF07755_consen 53 PVILEAIEAGLDIVSGLHDFLSD-DPELAAAAKKNGV 88 (301)
T ss_dssp HHHHHHHHTT-EEEE-SSS-HCC-HHHHHCCHHCCT-
T ss_pred HHHHHHHHcCCCEEecChhhhcc-CHHHHHHHHHcCC
Confidence 45799999999999988875554 4555556654 44
No 65
>PRK08508 biotin synthase; Provisional
Probab=20.36 E-value=4.5e+02 Score=23.95 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC---cEEccCCcccCCCHHHHHH----HHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEEEEEecc
Q 040627 14 EILTQAVDLGC---CIVLANKKPLTSTKEDYDK----LVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSG 86 (267)
Q Consensus 14 ~~~~~aL~~G~---hVVTaNK~~~a~~~~~l~~----la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i~GIlNG 86 (267)
+..+++.++|. ++|++...+--...+.+.+ +.++...+..-+ ..|..--+.++.+...| +.++.+=+..
T Consensus 47 ~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~--s~G~~~~e~l~~Lk~aG--ld~~~~~lEt 122 (279)
T PRK08508 47 QEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIA--CNGTASVEQLKELKKAG--IFSYNHNLET 122 (279)
T ss_pred HHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEe--cCCCCCHHHHHHHHHcC--CCEEcccccc
Confidence 34455555665 4555555432223333333 333332333322 35777888999887654 3444433434
Q ss_pred chHHHhhcccCCCCHHH---HHHHHHHcCC
Q 040627 87 TLGYVMSEVEDGKPLSQ---VVKAAKSLGY 113 (267)
Q Consensus 87 T~NyILs~m~~g~~f~e---al~~Aq~~Gy 113 (267)
.+-++.++..+.+|++ .++.|++.|+
T Consensus 123 -~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 123 -SKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred -hHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4666888877899999 6678999997
Done!