Query 040627
Match_columns 267
No_of_seqs 145 out of 1076
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ebf_A Homoserine dehydrogenas 100.0 1E-75 3.5E-80 552.7 21.7 262 2-266 87-358 (358)
2 3do5_A HOM, homoserine dehydro 100.0 9.7E-72 3.3E-76 520.0 20.7 237 2-265 83-325 (327)
3 3ing_A Homoserine dehydrogenas 100.0 1.5E-69 5.3E-74 504.8 17.5 228 2-265 85-323 (325)
4 2ejw_A HDH, homoserine dehydro 100.0 1.5E-67 5.1E-72 492.8 22.1 235 2-266 69-309 (332)
5 3mtj_A Homoserine dehydrogenas 100.0 1.1E-67 3.8E-72 510.1 19.6 238 2-265 81-326 (444)
6 3c8m_A Homoserine dehydrogenas 100.0 3.9E-67 1.3E-71 489.1 19.6 231 2-265 89-329 (331)
7 1r0k_A 1-deoxy-D-xylulose 5-ph 98.7 1.3E-08 4.4E-13 96.5 5.3 126 2-150 96-239 (388)
8 3upl_A Oxidoreductase; rossman 98.2 1.1E-06 3.8E-11 84.6 5.9 137 2-146 110-248 (446)
9 3oqb_A Oxidoreductase; structu 96.9 0.0015 5E-08 60.4 6.5 81 2-84 86-171 (383)
10 1lc0_A Biliverdin reductase A; 96.6 0.004 1.4E-07 55.8 7.4 73 2-77 68-143 (294)
11 1ydw_A AX110P-like protein; st 96.5 0.0077 2.6E-07 55.1 8.3 82 2-85 74-161 (362)
12 1f06_A MESO-diaminopimelate D- 96.3 5.3E-05 1.8E-09 69.3 -7.5 66 2-71 61-130 (320)
13 3cea_A MYO-inositol 2-dehydrog 96.3 0.021 7.2E-07 51.5 9.8 81 2-84 74-160 (346)
14 1j5p_A Aspartate dehydrogenase 96.1 0.019 6.4E-07 51.3 8.5 73 2-81 63-139 (253)
15 4ew6_A D-galactose-1-dehydroge 96.0 0.023 7.8E-07 51.7 8.9 83 2-87 84-169 (330)
16 2glx_A 1,5-anhydro-D-fructose 96.0 0.022 7.7E-07 51.0 8.6 83 2-86 65-152 (332)
17 3kux_A Putative oxidoreductase 95.7 0.037 1.3E-06 50.4 8.9 81 2-84 70-155 (352)
18 3i23_A Oxidoreductase, GFO/IDH 95.6 0.037 1.3E-06 50.4 8.6 81 2-84 68-153 (349)
19 3gdo_A Uncharacterized oxidore 95.6 0.027 9.3E-07 51.5 7.6 82 2-85 68-154 (358)
20 1zh8_A Oxidoreductase; TM0312, 95.6 0.05 1.7E-06 49.4 9.3 82 2-85 85-171 (340)
21 2dc1_A L-aspartate dehydrogena 95.5 0.014 4.8E-07 50.4 5.0 66 2-67 53-121 (236)
22 2ho3_A Oxidoreductase, GFO/IDH 95.5 0.056 1.9E-06 48.5 9.2 81 2-85 65-148 (325)
23 3dty_A Oxidoreductase, GFO/IDH 95.4 0.059 2E-06 50.0 9.4 82 2-85 88-174 (398)
24 3e9m_A Oxidoreductase, GFO/IDH 95.3 0.05 1.7E-06 49.1 8.3 82 2-85 70-156 (330)
25 3o9z_A Lipopolysaccaride biosy 95.3 0.043 1.5E-06 49.5 7.7 82 2-85 75-159 (312)
26 3rc1_A Sugar 3-ketoreductase; 95.2 0.075 2.6E-06 48.5 9.1 82 2-85 92-178 (350)
27 3evn_A Oxidoreductase, GFO/IDH 95.2 0.059 2E-06 48.5 8.3 82 2-85 70-156 (329)
28 3e82_A Putative oxidoreductase 95.1 0.074 2.5E-06 48.8 8.8 82 2-85 70-156 (364)
29 3mz0_A Inositol 2-dehydrogenas 95.1 0.093 3.2E-06 47.5 9.3 80 2-83 69-154 (344)
30 3ip3_A Oxidoreductase, putativ 95.0 0.071 2.4E-06 48.2 8.3 82 2-85 70-158 (337)
31 1h6d_A Precursor form of gluco 95.0 0.071 2.4E-06 50.3 8.6 81 2-84 153-238 (433)
32 1xea_A Oxidoreductase, GFO/IDH 94.9 0.053 1.8E-06 48.7 7.0 80 2-83 66-150 (323)
33 2nvw_A Galactose/lactose metab 94.9 0.11 3.8E-06 49.8 9.6 82 2-85 111-204 (479)
34 2p2s_A Putative oxidoreductase 94.8 0.088 3E-06 47.4 8.5 80 2-83 69-154 (336)
35 3c1a_A Putative oxidoreductase 94.8 0.055 1.9E-06 48.4 7.0 81 2-84 72-155 (315)
36 3f4l_A Putative oxidoreductase 94.8 0.07 2.4E-06 48.4 7.8 81 2-84 68-153 (345)
37 3fhl_A Putative oxidoreductase 94.8 0.088 3E-06 48.1 8.5 82 2-85 68-154 (362)
38 3v5n_A Oxidoreductase; structu 94.6 0.076 2.6E-06 49.7 7.7 82 2-85 113-199 (417)
39 3ohs_X Trans-1,2-dihydrobenzen 94.6 0.12 4E-06 46.6 8.7 82 2-85 69-155 (334)
40 2yfq_A Padgh, NAD-GDH, NAD-spe 94.5 0.00058 2E-08 65.3 -7.2 95 2-113 295-397 (421)
41 4had_A Probable oxidoreductase 94.0 0.12 4.2E-06 46.6 7.5 82 2-85 89-175 (350)
42 3euw_A MYO-inositol dehydrogen 94.0 0.16 5.5E-06 45.8 8.3 81 2-84 68-153 (344)
43 3moi_A Probable dehydrogenase; 94.0 0.084 2.9E-06 48.7 6.4 80 2-83 67-151 (387)
44 3db2_A Putative NADPH-dependen 93.8 0.14 4.7E-06 46.5 7.4 81 2-84 69-154 (354)
45 3m2t_A Probable dehydrogenase; 93.7 0.11 3.8E-06 47.5 6.6 80 2-83 71-155 (359)
46 3ezy_A Dehydrogenase; structur 93.7 0.18 6.1E-06 45.6 7.8 80 2-83 67-151 (344)
47 4hkt_A Inositol 2-dehydrogenas 93.6 0.21 7.2E-06 44.7 8.2 80 2-83 66-150 (331)
48 3e18_A Oxidoreductase; dehydro 93.6 0.13 4.5E-06 47.0 6.9 82 2-85 68-154 (359)
49 3oa2_A WBPB; oxidoreductase, s 93.6 0.16 5.6E-06 45.7 7.5 82 2-85 76-162 (318)
50 2ixa_A Alpha-N-acetylgalactosa 93.5 0.2 6.7E-06 47.2 8.1 81 2-85 94-180 (444)
51 4gqa_A NAD binding oxidoreduct 93.3 0.21 7.3E-06 46.2 8.0 82 2-85 99-185 (412)
52 4fb5_A Probable oxidoreductase 93.0 0.41 1.4E-05 43.1 9.3 82 2-85 97-183 (393)
53 3u3x_A Oxidoreductase; structu 92.9 0.22 7.5E-06 45.6 7.3 80 2-83 91-176 (361)
54 3btv_A Galactose/lactose metab 92.8 0.44 1.5E-05 44.9 9.4 82 2-85 92-184 (438)
55 4h3v_A Oxidoreductase domain p 92.8 0.45 1.5E-05 42.9 9.2 81 2-84 78-166 (390)
56 3ec7_A Putative dehydrogenase; 92.6 0.43 1.5E-05 43.5 8.8 80 2-83 90-175 (357)
57 3q2i_A Dehydrogenase; rossmann 92.6 0.29 1E-05 44.3 7.5 81 2-84 78-163 (354)
58 3bio_A Oxidoreductase, GFO/IDH 92.5 0.075 2.6E-06 47.8 3.4 68 2-73 68-139 (304)
59 4f3y_A DHPR, dihydrodipicolina 92.4 0.1 3.5E-06 46.7 4.2 65 2-67 76-140 (272)
60 1tlt_A Putative oxidoreductase 91.7 0.3 1E-05 43.5 6.4 75 2-81 68-145 (319)
61 3a06_A 1-deoxy-D-xylulose 5-ph 89.1 0.22 7.6E-06 46.8 3.2 51 2-52 88-139 (376)
62 3uuw_A Putative oxidoreductase 88.8 0.64 2.2E-05 41.1 6.0 68 2-71 69-139 (308)
63 3ijp_A DHPR, dihydrodipicolina 88.5 0.4 1.4E-05 43.3 4.4 65 2-67 91-155 (288)
64 1p9l_A Dihydrodipicolinate red 86.8 0.66 2.3E-05 40.8 4.7 68 2-69 48-117 (245)
65 1nvm_B Acetaldehyde dehydrogen 85.7 0.31 1E-05 44.3 2.0 69 2-71 74-148 (312)
66 1dih_A Dihydrodipicolinate red 84.5 0.77 2.7E-05 40.8 4.0 54 2-56 75-128 (273)
67 3qy9_A DHPR, dihydrodipicolina 78.4 0.85 2.9E-05 40.0 2.0 65 2-69 57-121 (243)
68 2czc_A Glyceraldehyde-3-phosph 76.4 2 6.7E-05 39.1 3.9 30 2-32 82-111 (334)
69 2tmg_A Protein (glutamate dehy 66.9 0.14 4.9E-06 48.7 -6.3 95 2-113 288-390 (415)
70 1vm6_A DHPR, dihydrodipicolina 62.6 8.2 0.00028 33.7 4.6 67 2-69 56-122 (228)
71 3abi_A Putative uncharacterize 58.4 12 0.00041 33.8 5.2 61 2-64 80-141 (365)
72 4ina_A Saccharopine dehydrogen 57.2 34 0.0011 31.5 8.1 77 2-81 79-166 (405)
73 1cf2_P Protein (glyceraldehyde 51.0 12 0.00042 33.9 4.0 29 2-30 81-109 (337)
74 2whn_A PILC, pilus assembly pr 44.4 5.2 0.00018 29.8 0.3 49 55-108 24-72 (116)
75 3c1q_A General secretion pathw 42.1 5.4 0.00018 30.3 0.0 47 56-107 24-70 (123)
76 2khv_A Phage integrase; soluti 38.5 23 0.00079 25.3 3.1 35 86-126 65-100 (106)
77 2obn_A Hypothetical protein; s 35.0 36 0.0012 31.3 4.4 35 14-49 94-128 (349)
78 2yyy_A Glyceraldehyde-3-phosph 34.9 16 0.00056 33.3 2.1 28 2-29 84-112 (343)
79 2g0t_A Conserved hypothetical 33.3 34 0.0012 31.4 3.9 38 14-52 110-148 (350)
80 2z2v_A Hypothetical protein PH 32.6 50 0.0017 30.0 5.0 60 2-66 80-140 (365)
81 2ep5_A 350AA long hypothetical 31.8 29 0.001 31.4 3.2 30 2-31 80-109 (350)
82 3lys_A Prophage PI2 protein 01 29.6 42 0.0014 24.1 3.3 22 101-122 79-100 (112)
83 4gmf_A Yersiniabactin biosynth 28.1 43 0.0015 30.7 3.7 46 3-50 70-121 (372)
84 1ys4_A Aspartate-semialdehyde 27.9 37 0.0013 30.7 3.2 30 2-31 86-115 (354)
85 2kjs_A Putative acyl carrier p 27.6 36 0.0012 24.5 2.5 30 118-147 27-59 (87)
86 2nu8_A Succinyl-COA ligase [AD 27.4 49 0.0017 29.1 3.8 25 2-26 67-91 (288)
87 2yv1_A Succinyl-COA ligase [AD 24.3 57 0.0019 28.8 3.7 46 2-47 73-119 (294)
88 2yv2_A Succinyl-COA synthetase 24.2 66 0.0022 28.4 4.1 46 2-47 74-120 (297)
89 2kob_A Uncharacterized protein 23.6 56 0.0019 22.7 2.9 33 86-124 64-96 (108)
90 2f46_A Hypothetical protein; s 23.3 45 0.0015 26.1 2.5 28 87-114 116-143 (156)
91 2ozp_A N-acetyl-gamma-glutamyl 22.4 52 0.0018 29.7 3.1 30 2-31 71-100 (345)
92 2amw_A Hypothetical protein NE 21.6 1.2E+02 0.004 20.8 4.2 29 121-149 33-64 (83)
93 2oxo_A Integrase; DNA-binding 21.4 66 0.0022 21.6 2.8 32 86-123 65-96 (103)
94 3b1j_A Glyceraldehyde 3-phosph 21.0 61 0.0021 29.4 3.3 29 2-30 94-124 (339)
95 2kiw_A INT protein; alpha, str 20.7 78 0.0027 22.2 3.2 32 86-123 63-94 (111)
96 2x5j_O E4PDH, D-erythrose-4-ph 20.2 67 0.0023 29.2 3.3 29 2-30 95-125 (339)
97 1b7g_O Protein (glyceraldehyde 20.1 81 0.0028 28.4 3.8 28 2-29 80-107 (340)
No 1
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Probab=100.00 E-value=1e-75 Score=552.65 Aligned_cols=262 Identities=39% Similarity=0.651 Sum_probs=244.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHH--HHhC-CCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDK--LVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~--la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
||||||++.++++.+.+||++||||||+||+|+|.++.++++ ++++ ++.|+||++||+|+|+|+++|+++.+|++|.
T Consensus 87 vVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~~A~~~gv~~~~Ea~vg~giPii~~l~~~l~~G~~I~ 166 (358)
T 1ebf_A 87 ILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVE 166 (358)
T ss_dssp EEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGGTTTTSSCHHHHHHHHHHTCCEE
T ss_pred EEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHHHHHHcCCEEEEccccccCCcHHHHHHHHHHcCCCeE
Confidence 799999999888888899999999999999999966544444 5544 5699999999999999999999997799999
Q ss_pred EEEEEeccchHHHhhcc----cCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCc-eEeeecC
Q 040627 79 RIVGSLSGTLGYVMSEV----EDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDS-IKIESLY 153 (267)
Q Consensus 79 ~i~GIlNGT~NyILs~m----~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~d-v~~~gi~ 153 (267)
+|+||+|||+||||++| ++|.+|+|+|++||++||||+||++||+|+|+|+|++||||+.|.+++++| |+++||.
T Consensus 167 ~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~d~v~~egi~ 246 (358)
T 1ebf_A 167 KIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLI 246 (358)
T ss_dssp EEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCSSTHHHHTCHHHHHHHHHHHHHTTCCCCCTTSSCBCCCS
T ss_pred EEEEEEeecceeeecccccccccCCCHHHHHHHHHHcCCCCCCcccCCCChhHHHHHHHHHHhcCCCCCCCCeeEEeccc
Confidence 99999999999999999 889999999999999999999999999999999999999998899999999 9999999
Q ss_pred CCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEEC-C-eEEEEEEeecCCCCcccccCCCeEEEEEe
Q 040627 154 PEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEG-S-RCTVGIQELPKNSPLGRLRGSDNVLEIYS 231 (267)
Q Consensus 154 p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~-~-~~~V~p~~v~~~~pla~v~g~~N~v~i~t 231 (267)
|+++. +..+.++|+.+ |+.+|..|.+++++|+++|+++||||+++. + +++|+|+.+|++|||++|+|++|+|.|+|
T Consensus 247 p~~~~-~~~~~~~f~~~-l~~~d~~~~~~~~~A~~~g~~iklv~~~~~~~~~~~v~~~~v~~~~pla~v~g~~N~v~~~~ 324 (358)
T 1ebf_A 247 PKPLE-SVKSADEFLEK-LSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKT 324 (358)
T ss_dssp CGGGS-TTSCTHHHHHH-HGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSGGGGCCTTCEEEEEEE
T ss_pred ccccc-ccccHHHHHhc-CcccchhhHHHHHHHHHCCCEEEEEEEEEeCCCeEEEEEEEECCCCccccCCCCCEEEEEec
Confidence 99887 33489999987 999999999999999999999999999984 4 79999999999999999999999999999
Q ss_pred eeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 232 RCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 232 ~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
++| ++|++|+|+|||+.+||+||++||+++++++
T Consensus 325 ~~~-~~~~~~~G~GAG~~~TA~av~~Dii~i~~~~ 358 (358)
T 1ebf_A 325 KRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 358 (358)
T ss_dssp SSC-SSCEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccc-CccEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence 999 6799999999999999999999999999875
No 2
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.7e-72 Score=519.99 Aligned_cols=237 Identities=26% Similarity=0.488 Sum_probs=220.5
Q ss_pred eEEEcCCChHH----HHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASSET----VEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~~~----~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
||||||++..+ .+++.+||++||||||+||++++.+++++.++++ +++.|+||++|++|+|+|+++++++ +|++
T Consensus 83 vVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~~l-~~~~ 161 (327)
T 3do5_A 83 VLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYL-ALCE 161 (327)
T ss_dssp EEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHTTT-TTSC
T ss_pred EEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHHHh-hCCC
Confidence 79999987754 4667999999999999999999999999999886 5678999999999999999999998 6999
Q ss_pred EEEEEEEeccchHHHhhccc-CCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVE-DGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPE 155 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~-~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~ 155 (267)
|.+|+||+|||+||||++|+ +|.+|+|+|++||++||||+||++||+|+|+|+|++||||+.|.+++++||+++||.
T Consensus 162 I~~I~GIlnGT~nyilt~m~~~g~~f~~~l~~Aq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~dv~~~gi~-- 239 (327)
T 3do5_A 162 IESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGIT-- 239 (327)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSCSSCHHHHTSHHHHHHHHHHHHHTTCCCCGGGSEECCST--
T ss_pred ccEEEEEECCCcCcchhhcCcCCcCHHHHHHHHHHcCCCCCCchhhcCChhHHHHHHHHHHhhCCCCCHHHeeeeCCC--
Confidence 99999999999999999995 799999999999999999999999999999999999999988999999999999863
Q ss_pred CCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeC
Q 040627 156 EMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYS 235 (267)
Q Consensus 156 ~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~ 235 (267)
.++ .+++++|+++|+++||||++++++++|+|+++|++|||+ |+|++|+|.|+|++++
T Consensus 240 ------------------~i~---~~~~~~A~~~g~~iklv~~~~~~~~~V~p~~v~~~~pla-v~g~~N~v~~~~~~~g 297 (327)
T 3do5_A 240 ------------------QIT---PEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLA-IKGTMNAAMFKTDTAG 297 (327)
T ss_dssp ------------------TCC---HHHHHHHHTTTEEEEEEEEESSSCEEEEEEEEETTSGGG-CCSSCEEEEEEESSSC
T ss_pred ------------------CCC---HHHHHHHHHCCCEEEEEEEEECCeEEEEEEEECCCCceE-ECCCceEEEEEecccC
Confidence 344 367899999999999999999778999999999999999 9999999999999996
Q ss_pred CcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 236 EQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 236 ~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
|++|+|+|||+.+||+||++||+++++.
T Consensus 298 --~~~~~G~GAG~~~TA~av~~Di~~i~~~ 325 (327)
T 3do5_A 298 --SIFVAGRGAGKEETASAILSDLYEIYAG 325 (327)
T ss_dssp --EEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred --cEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999863
No 3
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.5e-69 Score=504.84 Aligned_cols=228 Identities=28% Similarity=0.407 Sum_probs=209.3
Q ss_pred eEEEcCCCh---HHH-HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASS---ETV-EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~---~~~-~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
||||||++. +.+ +++++||++||||||+||.+++.+++++.+++++ ++.|+|||+||+|+|+|+++++++ +|++
T Consensus 85 vVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~~l-~g~~ 163 (325)
T 3ing_A 85 LLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDYSI-LPSK 163 (325)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHHTC-TTCC
T ss_pred EEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHHHh-hCCC
Confidence 799999875 333 5579999999999999999999899999999864 679999999999999999999998 7999
Q ss_pred EEEEEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPE 155 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~ 155 (267)
|.+|+|||||||||||++|++|.+|+|+|+|||++||||+||++||+|+|+|+|++||||+ ||.+++++||+++||.
T Consensus 164 I~~i~Gi~nGT~nyil~~m~~g~~f~~~l~~Aq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~~v~~~gi~-- 241 (325)
T 3ing_A 164 VKRFRGIVSSTINYVIRNMANGRSLRDVVDDAIKKGIAESNPQDDLNGLDAARKSVILVNHIFGTEYTLNDVEYSGVD-- 241 (325)
T ss_dssp EEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSSTHHHHTTHHHHHHHHHHHHHHHCCCCCGGGSBCCCCC--
T ss_pred eeEEEEEEEeeeeEEeecccCCCCHHHHHHHHHHcCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCHHHeeeeCcC--
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999999874
Q ss_pred CCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CCeEEEEEEee--cCCCCcccccCCCeEE-EEE
Q 040627 156 EMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GSRCTVGIQEL--PKNSPLGRLRGSDNVL-EIY 230 (267)
Q Consensus 156 ~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~~~~V~p~~v--~~~~pla~v~g~~N~v-~i~ 230 (267)
+++.+| ++ ||||+++ +++++|+|+++ |++|||+ ++|++|+| .|+
T Consensus 242 -----~~~~~~----------------~~---------k~v~~~~~~~~~~~V~p~~~~~~~~~pla-v~g~~n~v~~~~ 290 (325)
T 3ing_A 242 -----ERSYNA----------------ND---------RLVTEVYVDDRRPVAVSRIISLNKDDFLM-SIGMDGLGYQIE 290 (325)
T ss_dssp -----SSCCCT----------------TE---------EEEEEEEEETTEEEEEEEEEECCTTCGGG-GSCTTCCEEEEE
T ss_pred -----cCCHHH----------------Hh---------CceEEEEecCCEEEEEEEEEcCCCCCcee-eCCCceEEEEEE
Confidence 232221 11 9999996 67899999999 9999999 99999999 999
Q ss_pred eeeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 231 SRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 231 t~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
|++++ |++++|+|||+.+||+||++||++++++
T Consensus 291 ~~~~g--~~~~~G~GAG~~~TA~av~~Di~~~~~~ 323 (325)
T 3ing_A 291 TDSNG--TVNVSDIYDGPYETAGAVVNDILLLSKV 323 (325)
T ss_dssp ESSSC--EEEEECSCCCHHHHHHHHHHHHHHHHTC
T ss_pred ccccC--cEEEEcCCCChHHHHHHHHHHHHHHHhh
Confidence 99996 7999999999999999999999999875
No 4
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-67 Score=492.78 Aligned_cols=235 Identities=31% Similarity=0.483 Sum_probs=220.6
Q ss_pred eEEEcCCChHHHH-HHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 2 AFVDCSASSETVE-ILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 2 vvVd~t~~~~~~~-~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
||||||++.+++. ++++||++||||||+||++++.+++++.++|+++ .++||++|++|+|+|++++ .+ .+++|.+|
T Consensus 69 vVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~-~~~~Ea~vg~giPii~~l~-~l-~~~~I~~I 145 (332)
T 2ejw_A 69 LVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG-LIYHEASVMAGTPALSFLE-TL-RGSELLEL 145 (332)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT-CEECGGGTTTTSSSHHHHH-HH-TTSEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC-CeEEEEEcccCCHHHHHHH-Hh-cCCCcceE
Confidence 7999999887765 4589999999999999999999999999999888 9999999999999999999 77 68999999
Q ss_pred EEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCCCCCC
Q 040627 81 VGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPEEMGP 159 (267)
Q Consensus 81 ~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~~~~~ 159 (267)
+||+|||+||||++|++|.+|+|+|++||++||||+||++|++|+|+++|+.|||++ ||.+++++||+++||
T Consensus 146 ~gI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~dP~~Dv~G~d~a~Kl~iLa~~~~G~~~~~~~v~~egi------- 218 (332)
T 2ejw_A 146 HGILNGTTLYILQEMEKGRTYAEALLEAQRLGYAEADPTLDVEGIDAAHKLTLLARLLVDPGFPFAEVEAQGI------- 218 (332)
T ss_dssp EEECCHHHHHHHHHHHTTCCHHHHHHHHHHTTSSCSSCHHHHTTHHHHHHHHHHHHHHTCTTCCGGGCEECCS-------
T ss_pred EEEEecccccccCccccCCCHHHHHHHHHHCCCCCCCCccccCchhHHHHHHHHHHHHhCCCCCHHHeEecCc-------
Confidence 999999999999999999999999999999999999999999999999999999997 999999999999976
Q ss_pred CCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CC--eEEEEEEeecCCCCcccccCCCeEEEEEeeeeC
Q 040627 160 NIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GS--RCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYS 235 (267)
Q Consensus 160 ~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~ 235 (267)
++++ .+++++|++.|+++||||+++ ++ .++|+|+++|++|||++++| |+|.|+|++++
T Consensus 219 -------------~~i~---~~di~~a~~~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v~g--N~v~~~~~~~g 280 (332)
T 2ejw_A 219 -------------ARLT---PEVLQKAEARGERVRLVASLFGEGGRWRAAVAPRRLPQDHPLARARG--NALWVRARPLG 280 (332)
T ss_dssp -------------TTCC---HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSHHHHCSS--EEEEEEEETTE
T ss_pred -------------CcCC---HHHHHHHHHCCCEEEEEEEEEecCCcEEEEEEEEEECCCChhhcCCC--CEEEeeccccC
Confidence 4455 367899999999999999997 45 58999999999999999999 99999999996
Q ss_pred CcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627 236 EQPLVIQGAGAGNDTTAAGVLADILDIQDLF 266 (267)
Q Consensus 236 ~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~ 266 (267)
|++++|+|||+.+||+||++||+++++.+
T Consensus 281 --~~~~~G~GAG~~~TAsav~~Di~~i~~~~ 309 (332)
T 2ejw_A 281 --EAFVTGPGAGGGATASGLFADLLRFLSGA 309 (332)
T ss_dssp --EEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred --cEEEEeCCCChHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999864
No 5
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=100.00 E-value=1.1e-67 Score=510.12 Aligned_cols=238 Identities=27% Similarity=0.463 Sum_probs=219.2
Q ss_pred eEEEcCCChH-HHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCcEEE
Q 040627 2 AFVDCSASSE-TVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDPVHR 79 (267)
Q Consensus 2 vvVd~t~~~~-~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~ 79 (267)
+||+||++.+ +.+.+++||++||||||+||.+.+.+++++.++++ +++.|+||++|++|+|+|+++++++ .+++|.+
T Consensus 81 vVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL-~~~~Ig~ 159 (444)
T 3mtj_A 81 IVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGL-TANRIEW 159 (444)
T ss_dssp EEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTT-TTSCEEE
T ss_pred EEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHH-hCCCCce
Confidence 6899999844 44567999999999999999988888888888886 5779999999999999999999998 6899999
Q ss_pred EEEEeccchHHHhhccc-CCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCCCC
Q 040627 80 IVGSLSGTLGYVMSEVE-DGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPEEM 157 (267)
Q Consensus 80 i~GIlNGT~NyILs~m~-~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~~~ 157 (267)
|+||+|||+||||++|+ +|.+|+|+|++||++||||+||++||+|+|+|+|++||||+ ||.+++++||+++||
T Consensus 160 I~GIlnGT~nyilt~m~~~g~~f~~~l~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~a~g~~~~~~dv~~egi----- 234 (444)
T 3mtj_A 160 LAGIINGTSNFILSEMRDKGAAFDDVLKEAQRLGYAEADPTFDIEGIDAAHKLTILSAIAFGIPMQFERAYTEGI----- 234 (444)
T ss_dssp EEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHTSSCSSCHHHHTSHHHHHHHHHHHHHHHTCCCCGGGCEECCS-----
T ss_pred EEEEEcCCcccccccCCCCCCCHHHHHHHHHHcCCCcCCccceecChhHHHHHHHHHHHHcCCCCCHHHeeeecC-----
Confidence 99999999999999995 69999999999999999999999999999999999999996 899999999999986
Q ss_pred CCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--C-C-eEEEEEEeecCCCCcccccCCCeEEEEEeee
Q 040627 158 GPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--G-S-RCTVGIQELPKNSPLGRLRGSDNVLEIYSRC 233 (267)
Q Consensus 158 ~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~-~-~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~ 233 (267)
++++ .+++++|++.|+++||||.++ + + +++|+|+++|++||||+|+|++|+|.|+|++
T Consensus 235 ---------------~~i~---~~d~~~A~~~g~~ikl~~~~~~~~~~~~~~V~p~~vp~~~pla~v~g~~Nav~~~~~~ 296 (444)
T 3mtj_A 235 ---------------SQLT---REDVRYAEELGYRIKLLGIARRAENGIELRVHPTLIPERRLIANVDGAMNAVLVKGDA 296 (444)
T ss_dssp ---------------TTCC---HHHHHHHHHTTEEEEEEEEEEECSSSEEEEEEEEEEETTSTGGGCCTTEEEEEEEETT
T ss_pred ---------------CCCC---HHHHHHHHHCCCEEEEEEEEEEcCCcEEEEEEEEEECCCCccccCCCCceEEEEEecc
Confidence 3444 356889999999999999986 3 3 6899999999999999999999999999999
Q ss_pred eCCcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 234 YSEQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 234 ~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
++ |++++|+|||+.|||+||++||+++++.
T Consensus 297 ~g--~~~~~G~GAG~~~TAsaV~~Dii~i~~~ 326 (444)
T 3mtj_A 297 VG--PTLYYGAGAGSEPTASAVVADLVDVTRL 326 (444)
T ss_dssp TE--EEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cC--cEEEEcCCCCHHHHHHHHHHHHHHHHhh
Confidence 85 8999999999999999999999999985
No 6
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=100.00 E-value=3.9e-67 Score=489.08 Aligned_cols=231 Identities=24% Similarity=0.343 Sum_probs=213.5
Q ss_pred eEEEcCCCh---HHH-HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccchHHHHHhhcCCCc
Q 040627 2 AFVDCSASS---ETV-EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVIASLNRILSSGDP 76 (267)
Q Consensus 2 vvVd~t~~~---~~~-~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii~~l~~~~~~gd~ 76 (267)
||||||++. +.+ +++++||++||||||+||.+++.+++++.++++ +++.|+||++|++|+|+|+++++++ .|++
T Consensus 89 vVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l~~~l-~g~~ 167 (331)
T 3c8m_A 89 IVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFIDYSV-LPSR 167 (331)
T ss_dssp EEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHHHS-TTCC
T ss_pred EEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHHHHHh-hcCc
Confidence 799999985 444 567999999999999999999988999998886 4669999999999999999999999 5999
Q ss_pred EEEEEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH-hCCCCCCCceEeeecCCC
Q 040627 77 VHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL-LGMRINIDSIKIESLYPE 155 (267)
Q Consensus 77 I~~i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~gi~p~ 155 (267)
|.+|+||+|||+||||++|++|.+|+|++++||++||||+||++|++|+|+++|++||||+ ||.+++++||+++||
T Consensus 168 I~~I~GI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~dP~~Dv~G~D~a~Kl~iLa~~a~g~~~~~~~v~~~gi--- 244 (331)
T 3c8m_A 168 IKKFRGIVSLTINYFIRELANKREFDDVLSEATKLGIVEKNYKDDLTGLDAARKSVILCNHLYGSSYRLSDVFYEGI--- 244 (331)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTSSCSSCHHHHTTHHHHHHHHHHHHHHHCCCCCGGGSEECCC---
T ss_pred ccEEEEEEeccceeEecchhcCCCHHHHHHHHHHcCCCCCCcccCCCCccHHHHHHHHHHHHhCCCCChhheEEeCc---
Confidence 9999999999999999999999999999999999999999999999999999999999996 999999999999986
Q ss_pred CCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CC--eEEEEEEeecCCCCcccccCCCeEEEEEe
Q 040627 156 EMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GS--RCTVGIQELPKNSPLGRLRGSDNVLEIYS 231 (267)
Q Consensus 156 ~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t 231 (267)
++++.+ .|+++||||+++ ++ +++|+|+++|++|||++++|++|+|.|+|
T Consensus 245 -----------------~~~~~~----------~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~~~~ 297 (331)
T 3c8m_A 245 -----------------LDQDRS----------FGKNERLVTETGIVNGKPSAESRIKSLDSNDYLLTLGKGSLGYQLQT 297 (331)
T ss_dssp -----------------C-CCCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCTTCGGGGSCTTCCEEEEEC
T ss_pred -----------------ccCChh----------cCCEEEEEEEEEEcCCcEEEEEEEEEECCCCccccCCCCcEEEEeec
Confidence 444432 899999999997 45 68999999999999999999999999999
Q ss_pred eeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhh
Q 040627 232 RCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDL 265 (267)
Q Consensus 232 ~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~ 265 (267)
++++ |++++|+|||+.+||+||++||+++++.
T Consensus 298 ~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~ 329 (331)
T 3c8m_A 298 DTNG--TLNVSDLYDGPYETAGAVMNDLVILSMF 329 (331)
T ss_dssp SSSC--EEEEECSSCCHHHHHHHHHHHHHHHHC-
T ss_pred cccC--cEEEEeCCCChHHhHHHHHHHHHHHHhc
Confidence 9995 7999999999999999999999999874
No 7
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=98.68 E-value=1.3e-08 Score=96.54 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=89.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccc---hHHHHHhhcCCCcE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPV---IASLNRILSSGDPV 77 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPi---i~~l~~~~~~gd~I 77 (267)
+||+|+.+........+||++||||++|||..++.+.+++.+++++ |+.+ +|| .+.+.+++ .|+++
T Consensus 96 vVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~l---------iPVDseh~Ai~q~L-~g~~i 165 (388)
T 1r0k_A 96 WTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTL---------LPVDSEHNAIFQCF-PHHNR 165 (388)
T ss_dssp EEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEE---------EECSHHHHHHHHHC-CTTCG
T ss_pred EEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEE---------EEechhHHHHHHHh-hCCCc
Confidence 6899997765556669999999999999999999999999998864 5666 899 88999999 48887
Q ss_pred EEEEEE-eccch----HHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCC---CcchHHHH-----HHHHH-HhCCCCC
Q 040627 78 HRIVGS-LSGTL----GYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLS---GMDVARKA-----LILAR-LLGMRIN 143 (267)
Q Consensus 78 ~~i~GI-lNGT~----NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~---G~Daa~Kl-----~ILa~-~~g~~i~ 143 (267)
.+|+|| +.++. +|.+.+| ...++++|++ +|+.+-. -+|+|.-. +|=|+ +||.+
T Consensus 166 ~~v~~IilTaSGGpfr~~~~~~l-~~vt~~~Al~----------hp~W~mG~KitiDSAtm~NkglevIEa~~Lf~~~-- 232 (388)
T 1r0k_A 166 DYVRRIIITASGGPFRTTSLAEM-ATVTPERAVQ----------HPNWSMGAKISIDSATMMNKGLELIEAFHLFQIP-- 232 (388)
T ss_dssp GGEEEEEEEECCCTTTTCCHHHH-TTCCHHHHHC----------------CHHHHHHHHHTHHHHHHHHHHHHHHCCC--
T ss_pred cceeEEEEEeecccccCCCHHHH-hcCCHHHhcc----------CCCCCCcchhhhHHHHHHcCcCccccccccCCCC--
Confidence 777774 56655 6777777 4788887664 3432211 13554333 45577 47876
Q ss_pred CCceEee
Q 040627 144 IDSIKIE 150 (267)
Q Consensus 144 ~~dv~~~ 150 (267)
+++|++-
T Consensus 233 ~~~I~vv 239 (388)
T 1r0k_A 233 LEKFEIL 239 (388)
T ss_dssp GGGEEEE
T ss_pred HHHeeee
Confidence 4566653
No 8
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=98.22 E-value=1.1e-06 Score=84.64 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=103.4
Q ss_pred eEEEcCCChHH-HHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceEEeeeccccccchHHHHHhhcCCCcEEE
Q 040627 2 AFVDCSASSET-VEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVHR 79 (267)
Q Consensus 2 vvVd~t~~~~~-~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~~ 79 (267)
+||+||++.+. .+...+||++||||++.||.+.+...+++.+++++ |+.+.+-..-- --++++.++....-|-++..
T Consensus 110 aVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdq-p~~~~eLv~~a~~~G~~~v~ 188 (446)
T 3upl_A 110 VIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDE-PSSCMELIEFVSALGYEVVS 188 (446)
T ss_dssp EEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSH-HHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcc-hHHHHHHHHHHHhCCCeEEE
Confidence 68999988654 56679999999999999998777777888888865 55666543211 23377888776655666666
Q ss_pred EEEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCc
Q 040627 80 IVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDS 146 (267)
Q Consensus 80 i~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~d 146 (267)
+. -|+-|.... -.+.+..-++|++.|+...-.+..++|..++..+.++||..|..++...
T Consensus 189 ~G---kg~~~~~~~----~~t~~~~~~~a~~~~~~~~m~~sf~dgtk~~~Em~~vaNatGl~p~~~g 248 (446)
T 3upl_A 189 AG---KGKNNPLNF----DATPDDYRQEADRRNMNVRLLVEFIDGSKTMVEMAAIANATGLVPDIAG 248 (446)
T ss_dssp EE---EEESSCCCT----TCCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHCCBCSSTT
T ss_pred ec---cCcCCcccC----CCChhHHHHHHHHCCCChHHhhhhccccHHHHHHHHHHhhcCCCCCCCC
Confidence 55 566543333 3456777889999999888888899999999999999999988766543
No 9
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=96.87 E-value=0.0015 Score=60.38 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=63.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHH---HHHHHhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKED---YDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~---l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+..++||++||||+ +.| |++...++ +.+++++.....+.+...-..|.+..+++.+..|. +
T Consensus 86 ~V~i~tp~~~h~~~~~~al~~Gk~V~-~EK-P~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 163 (383)
T 3oqb_A 86 MFFDAATTQARPGLLTQAINAGKHVY-CEK-PIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLRDSGFFGR 163 (383)
T ss_dssp EEEECSCSSSSHHHHHHHHTTTCEEE-ECS-CSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTSS
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEE-EcC-CCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHHHcCCCCC
Confidence 57889998888888899999999998 887 55555544 44445544456788999999999999999997653 7
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..+++.+
T Consensus 164 i~~~~~~~ 171 (383)
T 3oqb_A 164 ILSVRGEF 171 (383)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEe
Confidence 88888654
No 10
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=96.63 E-value=0.004 Score=55.80 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=59.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPV 77 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I 77 (267)
+|+.||+...+.+..++||++||||+. .| |++...++.+++ ++++....+++...-..|.+..+++.+. +.+|
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~-EK-Pla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~-~g~i 143 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQFLQAGKHVLV-EY-PMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVL-GKEL 143 (294)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-ES-CSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHT-TCCE
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEEE-eC-CCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHh-cCCe
Confidence 578899988888888999999999997 56 888887665555 4444455799999999999999999986 4555
No 11
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=96.47 E-value=0.0077 Score=55.13 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=62.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC---
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--- 75 (267)
+|+.||+...+.+...+||++||||+. .| |++...++.++| ++++....+++...---|.+..+++++..|.
T Consensus 74 ~V~i~tp~~~h~~~~~~al~aGk~V~~-EK-P~a~~~~e~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~~iG 151 (362)
T 1ydw_A 74 ALYVPLPTSLHVEWAIKAAEKGKHILL-EK-PVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTALLKEFLSDSERFG 151 (362)
T ss_dssp EEEECCCGGGHHHHHHHHHTTTCEEEE-CS-SCSSSHHHHHHHHHHHHTTTCCEEECCCGGGSGGGTTTTTGGGCTTTTC
T ss_pred EEEEcCChHHHHHHHHHHHHCCCeEEE-ec-CCcCCHHHHHHHHHHHHHcCCEEEEEEeeccCHHHHHHHHHHHhcCCcc
Confidence 678899888888888999999999996 66 777776655554 4555555567766677899999999887654
Q ss_pred cEEEEEEEec
Q 040627 76 PVHRIVGSLS 85 (267)
Q Consensus 76 ~I~~i~GIlN 85 (267)
+|..+++.++
T Consensus 152 ~i~~v~~~~~ 161 (362)
T 1ydw_A 152 QLKTVQSCFS 161 (362)
T ss_dssp SEEEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 7888886653
No 12
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=96.26 E-value=5.3e-05 Score=69.28 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=43.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCC--CHHHHHHHHhCCC--ceEEeeeccccccchHHHHHhh
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTS--TKEDYDKLVSRPR--RIRYESTVGAGLPVIASLNRIL 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~--~~~~l~~la~~~~--~~~yEatVggGiPii~~l~~~~ 71 (267)
++|+||+...+.+.+..+|++|+|||......+.. .++++.++++++. .+.|. +-.|-+..+++.+
T Consensus 61 vViiatp~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~----~~~p~~~~l~~~l 130 (320)
T 1f06_A 61 VLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVST----GWDPGMFSINRVY 130 (320)
T ss_dssp EEEECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSC----SBTTBHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEec----CChHHHHHHHHHH
Confidence 68999988877777899999999999987654432 1255566665443 33333 3455555555444
No 13
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=96.25 E-value=0.021 Score=51.53 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=63.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCC-CceEEeeeccccccchHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRP-RRIRYESTVGAGLPVIASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~-~~~~yEatVggGiPii~~l~~~~~~gd-- 75 (267)
+|+.||+...+.+...++|++|+||+. .| |++...++.+++ ++++ ....+.+....-.|.+..+++++..|.
T Consensus 74 ~V~i~tp~~~h~~~~~~al~~G~~v~~-eK-p~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG 151 (346)
T 3cea_A 74 AIFIVAPTPFHPEMTIYAMNAGLNVFC-EK-PLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIG 151 (346)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-CS-CCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTC
T ss_pred EEEEeCChHhHHHHHHHHHHCCCEEEE-cC-CCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCCC
Confidence 588999988888888999999999996 55 777777665444 4555 555678888888999999999987665
Q ss_pred cEEEEEEEe
Q 040627 76 PVHRIVGSL 84 (267)
Q Consensus 76 ~I~~i~GIl 84 (267)
+|..++...
T Consensus 152 ~i~~v~~~~ 160 (346)
T 3cea_A 152 KIIYMRGYG 160 (346)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 788887653
No 14
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=96.11 E-value=0.019 Score=51.28 Aligned_cols=73 Identities=15% Similarity=0.306 Sum_probs=51.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHhCCC-ceEE-eeeccccccchHHHHHhhcCCCcE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVSRPR-RIRY-ESTVGAGLPVIASLNRILSSGDPV 77 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~~~~-~~~y-EatVggGiPii~~l~~~~~~gd~I 77 (267)
+||||.+.....+++.++|++|++||+..-.+++.. .+.+.++++++. +++. .++++| ++.++-.. ..|
T Consensus 63 ~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G----lD~l~aa~---g~l 135 (253)
T 1j5p_A 63 TVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG----LDVLSSIK---DFV 135 (253)
T ss_dssp EEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC----HHHHHHHG---GGE
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc----hhHHHHhc---CCc
Confidence 689999666666678999999999999998887753 356666677654 6553 444444 67775432 577
Q ss_pred EEEE
Q 040627 78 HRIV 81 (267)
Q Consensus 78 ~~i~ 81 (267)
.++.
T Consensus 136 ~~V~ 139 (253)
T 1j5p_A 136 KNVR 139 (253)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 7754
No 15
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=96.01 E-value=0.023 Score=51.65 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=65.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|+.||+...+.+..++||++||||+ +-| |++...++.+++ +++.....+.+...--.|.+..+++.+.. .+|-
T Consensus 84 ~V~i~tp~~~H~~~~~~al~aGkhVl-~EK-P~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~-g~iG 160 (330)
T 4ew6_A 84 AVSLCMPPQYRYEAAYKALVAGKHVF-LEK-PPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLAS-TTIK 160 (330)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEE-ECS-SSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHHS-SCEE
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEE-EeC-CCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHhc-CCce
Confidence 57889988878888899999999999 566 777777665555 44444567889999999999999999975 5788
Q ss_pred EEEEEeccc
Q 040627 79 RIVGSLSGT 87 (267)
Q Consensus 79 ~i~GIlNGT 87 (267)
++..++...
T Consensus 161 ~v~~~~~~~ 169 (330)
T 4ew6_A 161 SVHVIWKED 169 (330)
T ss_dssp EEEEEEECB
T ss_pred EEEEEEccC
Confidence 887666544
No 16
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=95.98 E-value=0.022 Score=51.03 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=64.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...++|++|+||+. .| |++...++.++| ++++....+.+....-.|.+..+++.+..|. +
T Consensus 65 ~V~i~tp~~~h~~~~~~al~~Gk~v~~-ek-P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG~ 142 (332)
T 2glx_A 65 AVYVSTTNELHREQTLAAIRAGKHVLC-EK-PLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIGR 142 (332)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-CS-SSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCChhHhHHHHHHHHHCCCeEEE-eC-CCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCCCC
Confidence 578899888888888999999999986 55 777777665555 4444445677888888999999999987664 7
Q ss_pred EEEEEEEecc
Q 040627 77 VHRIVGSLSG 86 (267)
Q Consensus 77 I~~i~GIlNG 86 (267)
|..++..++.
T Consensus 143 i~~v~~~~~~ 152 (332)
T 2glx_A 143 PIAARVFHAV 152 (332)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEEcc
Confidence 8888877654
No 17
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=95.70 E-value=0.037 Score=50.41 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=61.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+. -+|++...++.++| +++.....+.+...---|.+..+++++..|. +
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGkhV~~--EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 147 (352)
T 3kux_A 70 LIVIPTPNDTHFPLAQSALAAGKHVVV--DKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGN 147 (352)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEE--CSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCS
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEE--ECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhcCCCCc
Confidence 578899988888888999999999997 45777776665555 4444445566777777899999999886543 6
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++.-+
T Consensus 148 i~~~~~~~ 155 (352)
T 3kux_A 148 VVYFESHF 155 (352)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 77777654
No 18
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=95.62 E-value=0.037 Score=50.38 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=61.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+. -+|++...++.++| ++++....+.+...--.|.+..+++++..|. +
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGk~Vl~--EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 145 (349)
T 3i23_A 68 LITICTPAHTHYDLAKQAILAGKSVIV--EKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQGFLGE 145 (349)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--CSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCS
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCEEEE--ECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence 578899888888888999999999997 45777776665555 4444445567777778899999999887553 6
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++..+
T Consensus 146 i~~~~~~~ 153 (349)
T 3i23_A 146 INEVETHI 153 (349)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 77777544
No 19
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=95.59 E-value=0.027 Score=51.53 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=63.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+. -+|++...++.++|. +++....+.+-..---|.+..+++++..|. +
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~--EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 145 (358)
T 3gdo_A 68 LVIVTTPSGLHYEHTMACIQAGKHVVM--EKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLED 145 (358)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEE--ESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTSSCS
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEE--ecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHhcCCCCc
Confidence 578899998888888999999999997 567888777666553 443445556667777899999999987664 6
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++..++
T Consensus 146 i~~~~~~~~ 154 (358)
T 3gdo_A 146 INTYQVSYN 154 (358)
T ss_dssp CCEEEEECC
T ss_pred eEEEEEEEe
Confidence 888876543
No 20
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=95.58 E-value=0.05 Score=49.38 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=65.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+..++||++||||..= +|++...++.++|. +++....+.+...--.|.+..+++++..|. +
T Consensus 85 ~V~i~tp~~~H~~~~~~al~aGkhVl~E--KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~ 162 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALRKGVHVICE--KPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVESGAIGD 162 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEE--SSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCCchHHHHHHHHHHHCCCcEEEe--CCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence 5778998888888889999999999984 58888877766654 445556778888888999999999987664 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++....
T Consensus 163 i~~v~~~~~ 171 (340)
T 1zh8_A 163 PVFMNWQIW 171 (340)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEe
Confidence 888886543
No 21
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=95.51 E-value=0.014 Score=50.35 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=50.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCC--HHHHHHHHh-CCCceEEeeeccccccchHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTST--KEDYDKLVS-RPRRIRYESTVGAGLPVIASL 67 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~--~~~l~~la~-~~~~~~yEatVggGiPii~~l 67 (267)
++++||+...+.+.+..+|++|+|||.......... .+++.++++ ++..+.+++.+.||++.+...
T Consensus 53 vVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~ 121 (236)
T 2dc1_A 53 VAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSA 121 (236)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHh
Confidence 689999887777778999999999999876555443 256666665 466888999999998776644
No 22
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=95.51 E-value=0.056 Score=48.48 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=64.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|+.||+...+.....+||++||||+. .| |++...++.+++ ++++....+.+...--.|.+..+++.+.. -+|.
T Consensus 65 ~V~i~tp~~~h~~~~~~al~~gk~V~~-EK-P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~-G~i~ 141 (325)
T 2ho3_A 65 LVYIASPNSLHFAQAKAALSAGKHVIL-EK-PAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD-XQVL 141 (325)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-ES-SCCSSHHHHHHHHHHHHHTTCCEEEECTTTTCHHHHHHHHHHTT-SCEE
T ss_pred EEEEeCChHHHHHHHHHHHHcCCcEEE-ec-CCcCCHHHHHHHHHHHHHcCCEEEEEEhhhcChHHHHHHHHhhh-cCcc
Confidence 688999888888888999999999997 45 677777655555 44444556888888899999999999976 5888
Q ss_pred EEEEEec
Q 040627 79 RIVGSLS 85 (267)
Q Consensus 79 ~i~GIlN 85 (267)
.++..+.
T Consensus 142 ~v~~~~~ 148 (325)
T 2ho3_A 142 GADFNYA 148 (325)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8887654
No 23
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=95.44 E-value=0.059 Score=50.02 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=64.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+. -+|++...++.++| +++.....+.+-..-..|.+..+++++..|. +
T Consensus 88 ~V~i~tp~~~H~~~~~~al~aGkhVl~--EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~G~iG~ 165 (398)
T 3dty_A 88 AVSIATPNGTHYSITKAALEAGLHVVC--EKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAAGELGD 165 (398)
T ss_dssp EEEEESCGGGHHHHHHHHHHTTCEEEE--CSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEE--eCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence 577899888888888999999999998 56888877666555 3444455578888888999999999997654 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..+++-+.
T Consensus 166 i~~v~~~~~ 174 (398)
T 3dty_A 166 VRMVHMQFA 174 (398)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 888887653
No 24
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=95.34 E-value=0.05 Score=49.14 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=65.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+.-. |++...++.+++ ++++....+.+...--.|.+..+++++..|. +
T Consensus 70 ~V~i~tp~~~h~~~~~~al~~gk~vl~EK--P~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 147 (330)
T 3e9m_A 70 IIYIPTYNQGHYSAAKLALSQGKPVLLEK--PFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLGE 147 (330)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCCEEECS--SCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTCS
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCCC
Confidence 57889999888888899999999998643 677776665555 4455567788888889999999999997654 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++..+.
T Consensus 148 i~~i~~~~~ 156 (330)
T 3e9m_A 148 ILWVQSVTA 156 (330)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 888887764
No 25
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=95.29 E-value=0.043 Score=49.45 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=63.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|+-||+...+.+..++||++||||+ +- +|++...++.++| +++.....+.+-..---|.+..+++.+..|-+|.
T Consensus 75 ~V~I~tP~~~H~~~~~~al~aGkhVl-~E-KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~gG~i~ 152 (312)
T 3o9z_A 75 YLSIASPNHLHYPQIRMALRLGANAL-SE-KPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLGQEKGAK 152 (312)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEE-EC-SSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTCCSCE
T ss_pred EEEECCCchhhHHHHHHHHHCCCeEE-EE-CCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHHcCCCEE
Confidence 47789998888888899999999999 44 4777777666655 4444455566777777899999999998877888
Q ss_pred EEEEEec
Q 040627 79 RIVGSLS 85 (267)
Q Consensus 79 ~i~GIlN 85 (267)
.++..+.
T Consensus 153 ~v~~~~~ 159 (312)
T 3o9z_A 153 DVVLTYV 159 (312)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8886654
No 26
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=95.19 E-value=0.075 Score=48.45 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=63.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+. -| |++...++.++| +++.....+++-.---.|.+..+++++..|. +
T Consensus 92 ~V~i~tp~~~h~~~~~~al~aGk~Vl~-EK-P~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 169 (350)
T 3rc1_A 92 AVYVPLPAVLHAEWIDRALRAGKHVLA-EK-PLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIGE 169 (350)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEE-ES-SSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCcEEE-eC-CCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence 577899988888888999999999884 44 777777666555 4444556678888888899999999987653 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..+++.+.
T Consensus 170 i~~v~~~~~ 178 (350)
T 3rc1_A 170 IRSFAASFT 178 (350)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 888887654
No 27
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=95.18 E-value=0.059 Score=48.55 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=63.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+..+.||++||||+.- +|++...++.+++ ++++....+++-..--.|.+..+++++..|. +
T Consensus 70 ~V~i~tp~~~h~~~~~~al~aGk~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 147 (329)
T 3evn_A 70 VIYVATINQDHYKVAKAALLAGKHVLVE--KPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGE 147 (329)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEE--SSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEc--cCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCCC
Confidence 5788999888888889999999999964 3777777665555 4444455678888888999999999987553 6
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++..+.
T Consensus 148 i~~v~~~~~ 156 (329)
T 3evn_A 148 VISISSTTA 156 (329)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 777776543
No 28
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=95.10 E-value=0.074 Score=48.78 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=60.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+. -+|++...++.+++ +++.....+.+-..---|.+..+++++..|. +
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGk~Vl~--EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 147 (364)
T 3e82_A 70 LVVIASPNATHAPLARLALNAGKHVVV--DKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGA 147 (364)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--CSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHTTTCS
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEE--eCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHcCCCcc
Confidence 578899998888888999999999997 46778777666555 3333334444555556799999999887553 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..+++.++
T Consensus 148 i~~~~~~~~ 156 (364)
T 3e82_A 148 VKHFESHFD 156 (364)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEee
Confidence 888876543
No 29
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=95.08 E-value=0.093 Score=47.45 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=63.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---h-CCCceEEeeeccccccchHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---S-RPRRIRYESTVGAGLPVIASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~-~~~~~~yEatVggGiPii~~l~~~~~~gd-- 75 (267)
+|+-||+...+.+...++|++||||+. -+|++...++.+++. + +++.+++.+-..--.|.+..+++.+..|.
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~Gk~vl~--EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 146 (344)
T 3mz0_A 69 AVLVTSWGPAHESSVLKAIKAQKYVFC--EKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVIG 146 (344)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--CSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHTTTTS
T ss_pred EEEECCCchhHHHHHHHHHHCCCcEEE--cCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHcCCCC
Confidence 578899888888888999999999996 557888777665553 3 45567688888888999999999987653
Q ss_pred cEEEEEEE
Q 040627 76 PVHRIVGS 83 (267)
Q Consensus 76 ~I~~i~GI 83 (267)
+|..++..
T Consensus 147 ~i~~v~~~ 154 (344)
T 3mz0_A 147 EPLMIHCA 154 (344)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 67777754
No 30
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=95.02 E-value=0.071 Score=48.19 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=62.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---Hh-CCCc-eEEeeeccccccchHHHHHhhcCCC-
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VS-RPRR-IRYESTVGAGLPVIASLNRILSSGD- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~-~~~~-~~yEatVggGiPii~~l~~~~~~gd- 75 (267)
+|+-||+...+.+..++||++||||. +-| |++...++.+++ ++ +++. +.+.+-..--.|.+..+++++..|.
T Consensus 70 ~V~I~tp~~~H~~~~~~al~aGkhVl-~EK-Pla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~g~i 147 (337)
T 3ip3_A 70 ILVINTVFSLNGKILLEALERKIHAF-VEK-PIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSEGAV 147 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEE-ECS-SSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHHTTT
T ss_pred EEEEeCCcchHHHHHHHHHHCCCcEE-EeC-CCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhcCCc
Confidence 46778888878888899999999987 666 777776665555 33 3444 3678888888999999999987554
Q ss_pred -cEEEEEEEec
Q 040627 76 -PVHRIVGSLS 85 (267)
Q Consensus 76 -~I~~i~GIlN 85 (267)
+|..+++.++
T Consensus 148 G~i~~i~~~~~ 158 (337)
T 3ip3_A 148 GEIRLVNTQKS 158 (337)
T ss_dssp SSEEEEEEEEE
T ss_pred cceEEEEEEec
Confidence 7888876543
No 31
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=95.00 E-value=0.071 Score=50.30 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=63.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+....||++||||+. -| |++...++.++|. ++.....+.+...--.|.+..+++++..|. +
T Consensus 153 ~V~iatp~~~h~~~~~~al~aGk~Vl~-EK-Pla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 230 (433)
T 1h6d_A 153 AVYIILPNSLHAEFAIRAFKAGKHVMC-EK-PMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGK 230 (433)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-CS-SCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHTTSSCS
T ss_pred EEEEcCCchhHHHHHHHHHHCCCcEEE-cC-CCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHHcCCCCC
Confidence 688899988888888999999999986 55 7888777655553 343445578788888899999999987654 7
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++..+
T Consensus 231 i~~v~~~~ 238 (433)
T 1h6d_A 231 LGMVTTDN 238 (433)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 88887654
No 32
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=94.88 E-value=0.053 Score=48.67 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...++|++||||+. .| |++...++.+++ ++++....+.+...--.|.+..+++.+..|. +
T Consensus 66 ~V~i~tp~~~h~~~~~~al~~Gk~V~~-EK-P~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 143 (323)
T 1xea_A 66 AVMIHAATDVHSTLAAFFLHLGIPTFV-DK-PLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQECGA 143 (323)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCCEEE-ES-CSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHHTSCTT
T ss_pred EEEEECCchhHHHHHHHHHHCCCeEEE-eC-CCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhcCCcCC
Confidence 578899888788888999999999985 55 777776655444 4444445677777788899999999887553 5
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 144 i~~v~~~ 150 (323)
T 1xea_A 144 LRSLRWE 150 (323)
T ss_dssp CSEEEEE
T ss_pred ceEEEEE
Confidence 6666643
No 33
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=94.86 E-value=0.11 Score=49.82 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=65.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcC------CcEEccCCcccCCCHHHHHHH---HhCCC-ceEEeeeccccccchHHHHHhh
Q 040627 2 AFVDCSASSETVEILTQAVDLG------CCIVLANKKPLTSTKEDYDKL---VSRPR-RIRYESTVGAGLPVIASLNRIL 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G------~hVVTaNK~~~a~~~~~l~~l---a~~~~-~~~yEatVggGiPii~~l~~~~ 71 (267)
+|+-||+...+.+...+||++| |||+. .| |++...++.++| +++.. ...+.+-..--.|.+..+++++
T Consensus 111 ~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~-EK-Pla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i 188 (479)
T 2nvw_A 111 MIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYV-EW-ALAASVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELI 188 (479)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEE-ES-SSSSSHHHHHHHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEE-eC-CCcCCHHHHHHHHHHHHHcCCeEEEEEeccccCHHHHHHHHHH
Confidence 5788998888888889999999 99987 56 788877655554 45555 6678888889999999999999
Q ss_pred cCCC--cEEEEEEEec
Q 040627 72 SSGD--PVHRIVGSLS 85 (267)
Q Consensus 72 ~~gd--~I~~i~GIlN 85 (267)
..|. +|..++..++
T Consensus 189 ~~G~iG~i~~v~~~~~ 204 (479)
T 2nvw_A 189 SEGCIGDINSIEISGN 204 (479)
T ss_dssp HTTTTCSEEEEEEEEE
T ss_pred HcCCCCCeEEEEEEec
Confidence 7665 7888887654
No 34
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=94.85 E-value=0.088 Score=47.39 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=60.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccc-hHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPV-IASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPi-i~~l~~~~~~gd-- 75 (267)
+|+-||+...+.+...+||++||||+. .| |++...++.++|. +++....+.+-..--.|- +..+++.+..|.
T Consensus 69 ~V~i~tp~~~h~~~~~~al~aGkhVl~-EK-P~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~g~iG 146 (336)
T 2p2s_A 69 LIACAVIPCDRAELALRTLDAGKDFFT-AK-PPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQRGEIG 146 (336)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-CS-SCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHTTTTS
T ss_pred EEEEeCChhhHHHHHHHHHHCCCcEEE-eC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhCCCCC
Confidence 577899888888888999999999986 55 7888776655553 443344566666667787 999999887664
Q ss_pred cEEEEEEE
Q 040627 76 PVHRIVGS 83 (267)
Q Consensus 76 ~I~~i~GI 83 (267)
+|..++..
T Consensus 147 ~i~~v~~~ 154 (336)
T 2p2s_A 147 RVIQTMGV 154 (336)
T ss_dssp SEEEEEEE
T ss_pred ceEEEEEE
Confidence 78888754
No 35
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=94.85 E-value=0.055 Score=48.38 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=60.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|+.||+...+.+...+||++||||+ +.| |++...++.+++ +++.....+.+...--.|.+..+++.+..--+|.
T Consensus 72 ~V~i~tp~~~h~~~~~~al~~Gk~v~-~eK-P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~lG~i~ 149 (315)
T 3c1a_A 72 AVIIATPPATHAEITLAAIASGKAVL-VEK-PLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSIGPIL 149 (315)
T ss_dssp EEEEESCGGGHHHHHHHHHHTTCEEE-EES-SSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHHCSEE
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEE-EcC-CCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHcCCeE
Confidence 57889988888888899999999999 456 777776655554 4444445688888889999999999874112677
Q ss_pred EEEEEe
Q 040627 79 RIVGSL 84 (267)
Q Consensus 79 ~i~GIl 84 (267)
.++.-+
T Consensus 150 ~v~~~~ 155 (315)
T 3c1a_A 150 AVRSEA 155 (315)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877554
No 36
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=94.84 E-value=0.07 Score=48.37 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=61.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+...+||++||||+.- +|++...++.+++. ++.....+.+-..--.|.+..+++.+..|. +
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGk~Vl~E--KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 145 (345)
T 3f4l_A 68 LVVVCTHADSHFEYAKRALEAGKNVLVE--KPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGE 145 (345)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC--SSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHSTTCS
T ss_pred EEEEcCChHHHHHHHHHHHHcCCcEEEe--CCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhcCCCCC
Confidence 5788998888888889999999999976 78888877666553 333344466777777899999999887553 7
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++.-+
T Consensus 146 i~~~~~~~ 153 (345)
T 3f4l_A 146 IVEVESHF 153 (345)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEe
Confidence 77777543
No 37
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=94.82 E-value=0.088 Score=48.10 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+. -+|++...++.++|. ++.....+.+-..---|.+..+++++..|. +
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~--EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 145 (362)
T 3fhl_A 68 LIVVNTPDNTHYEYAGMALEAGKNVVV--EKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAKSLLGR 145 (362)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--ESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCChHHHHHHHHHHHHCCCeEEE--ecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHcCCCCC
Confidence 578899998888888999999999997 467888877766654 333344455666666899999999987653 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++..++
T Consensus 146 i~~v~~~~~ 154 (362)
T 3fhl_A 146 LVEYESTFA 154 (362)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 888886653
No 38
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=94.64 E-value=0.076 Score=49.72 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=64.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+.= +|++...++.++| +++.....+.+-..-.-|.+..+++++..|. +
T Consensus 113 ~V~I~tp~~~H~~~~~~al~aGkhVl~E--KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 190 (417)
T 3v5n_A 113 AVAIVTPNHVHYAAAKEFLKRGIHVICD--KPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIENGDIGA 190 (417)
T ss_dssp EEEECSCTTSHHHHHHHHHTTTCEEEEE--SSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHTTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHhCCCeEEEE--CCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence 5778999888888889999999999864 3777776665555 4444455578888888999999999997765 8
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..+++.+.
T Consensus 191 i~~v~~~~~ 199 (417)
T 3v5n_A 191 VRLVQMEYP 199 (417)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 888887664
No 39
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=94.64 E-value=0.12 Score=46.59 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=64.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+.= +|++...++.++| ++++..+.+++-..--.|.+..+++.+..|. +
T Consensus 69 ~V~i~tp~~~H~~~~~~al~~GkhVl~E--KP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 146 (334)
T 3ohs_X 69 VAYVGTQHPQHKAAVMLCLAAGKAVLCE--KPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQGTLGD 146 (334)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEE--SSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHHTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEE--CCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhcCCCCC
Confidence 5778898888888889999999998863 4788877666555 4455567788888889999999999886543 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++.-+.
T Consensus 147 i~~v~~~~~ 155 (334)
T 3ohs_X 147 LRVARAEFG 155 (334)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEcc
Confidence 888876554
No 40
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=94.54 E-value=0.00058 Score=65.28 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=64.6
Q ss_pred eEEEcCCChHH-HHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 2 AFVDCSASSET-VEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 2 vvVd~t~~~~~-~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
|++.|....+. .+...+ | +.++||.+++.+++...+++ |++++..+ +.-+.... -|-.+..+
T Consensus 295 IliP~A~~n~i~~~~A~~-l-~ak~VvEgAN~P~t~ea~~i--l~~~GI~~------------~Pd~~aNa-GGV~vS~~ 357 (421)
T 2yfq_A 295 IIVPAALENVITGERAKT-I-NAKLVCEAANGPTTPEGDKV--LTERGINL------------TPDILTNS-GGVLVSYY 357 (421)
T ss_dssp CEEECSCSSCSCHHHHTT-C-CCSEEECCSSSCSCHHHHHH--HHHHTCEE------------ECHHHHTT-HHHHHHHH
T ss_pred EEEEcCCcCcCCcccHHH-c-CCeEEEeCCccccCHHHHHH--HHHCCCEE------------EChHHHhC-CCeEEEEE
Confidence 57888765533 222222 2 78999999999997444333 34555432 22222222 25566677
Q ss_pred EEEeccchHH-----HhhcccC--CCCHHHHHHHHHHcCC
Q 040627 81 VGSLSGTLGY-----VMSEVED--GKPLSQVVKAAKSLGY 113 (267)
Q Consensus 81 ~GIlNGT~Ny-----ILs~m~~--g~~f~eal~~Aq~~Gy 113 (267)
|++.|+|.+| |+++|++ +.+|.+++++||+.|+
T Consensus 358 E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~A~~~g~ 397 (421)
T 2yfq_A 358 EWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNV 397 (421)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 8889999999 9999976 7899999999999885
No 41
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=94.04 E-value=0.12 Score=46.57 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=60.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+=||+...+.+...+||++||||.. -+|++...++.++| +++.......+-.----|.+..+++++..|. +
T Consensus 89 aV~I~tP~~~H~~~~~~al~aGkhVl~--EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG~ 166 (350)
T 4had_A 89 AVYIPLPTSQHIEWSIKAADAGKHVVC--EKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGS 166 (350)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--CSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCCCchhHHHHHHHHhcCCEEEE--eCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCCCc
Confidence 466789888888888999999999986 46777766555554 4444444555555566799999999998765 8
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..|++-++
T Consensus 167 i~~i~~~~~ 175 (350)
T 4had_A 167 LRHVQGAFT 175 (350)
T ss_dssp EEEEEEEEE
T ss_pred ceeeeEEEe
Confidence 888887553
No 42
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=94.03 E-value=0.16 Score=45.78 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=62.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+....||++|+||+.- +|++...++.+++ +++.....+.+...--.|.+..+++++..|. +
T Consensus 68 ~V~i~tp~~~h~~~~~~al~~gk~v~~E--KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 145 (344)
T 3euw_A 68 GIVIGSPTSTHVDLITRAVERGIPALCE--KPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGN 145 (344)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCCEEEC--SCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCCchhhHHHHHHHHHcCCcEEEE--CCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCc
Confidence 5788999888888889999999999965 3677776665554 4455567788888888999999999987653 6
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++...
T Consensus 146 i~~v~~~~ 153 (344)
T 3euw_A 146 LEQLVIIS 153 (344)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 77777543
No 43
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=93.98 E-value=0.084 Score=48.75 Aligned_cols=80 Identities=26% Similarity=0.308 Sum_probs=59.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+.- +|++...++.++| +++.....+.+...--.|.+..+++++..|. +
T Consensus 67 ~V~i~tp~~~H~~~~~~al~aGk~Vl~E--KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~ 144 (387)
T 3moi_A 67 AVYIASPHQFHCEHVVQASEQGLHIIVE--KPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQEGSVGR 144 (387)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC--SCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHHCTTCC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCceeee--CCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhcCCCCC
Confidence 5788998888888889999999999964 3667666555544 4444455577888888899999999987542 6
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 145 i~~~~~~ 151 (387)
T 3moi_A 145 VSMLNCF 151 (387)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6666653
No 44
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=93.80 E-value=0.14 Score=46.50 Aligned_cols=81 Identities=11% Similarity=0.217 Sum_probs=63.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...+||++||||+.- +|++...++.+++ +++.....+.+-..--.|.+..+++++..|. +
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~E--KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~ 146 (354)
T 3db2_A 69 MVIITVPNDKHAEVIEQCARSGKHIYVE--KPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGE 146 (354)
T ss_dssp EEEECSCTTSHHHHHHHHHHTTCEEEEE--SSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTTCC
T ss_pred EEEEeCChHHHHHHHHHHHHcCCEEEEc--cCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCCCC
Confidence 5788999988888889999999999864 3777776666555 4444455678888888999999999987654 6
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++..+
T Consensus 147 i~~v~~~~ 154 (354)
T 3db2_A 147 VSSIEAVF 154 (354)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 78777665
No 45
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=93.70 E-value=0.11 Score=47.50 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=60.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||.. -+|++...++.+++ +++.....+.+...--.|.+..+++.+..|. +
T Consensus 71 ~V~i~tp~~~H~~~~~~al~aGkhVl~--EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~ 148 (359)
T 3m2t_A 71 AVVMAGPPQLHFEMGLLAMSKGVNVFV--EKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQVDEFGE 148 (359)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEE--CSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHTSGGGCC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEE--ECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHHCCCCCC
Confidence 577889888888888999999999987 45888887766655 3443455677777788899999999986542 6
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 149 i~~~~~~ 155 (359)
T 3m2t_A 149 TLHIQLN 155 (359)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6766643
No 46
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=93.66 E-value=0.18 Score=45.58 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=61.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.....++|++|+||+ +-| |++...++.+++ +++.....+.+...--.|.+..+++++..|. +
T Consensus 67 ~V~i~tp~~~h~~~~~~al~~gk~v~-~EK-P~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 144 (344)
T 3ezy_A 67 AVLVCSSTNTHSELVIACAKAKKHVF-CEK-PLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTIGK 144 (344)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEE-EES-CSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTTSS
T ss_pred EEEEcCCCcchHHHHHHHHhcCCeEE-EEC-CCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCCCC
Confidence 57889988888888899999999998 444 777776665555 4444456677777888899999999987664 7
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 145 i~~~~~~ 151 (344)
T 3ezy_A 145 PHVLRIT 151 (344)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 8888765
No 47
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=93.62 E-value=0.21 Score=44.75 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+.||+...+.+...++|++||||+.- +|++...++.+++ +++.....+.+...--.|.+..+++++..|. +
T Consensus 66 ~V~i~tp~~~h~~~~~~al~~gk~v~~E--KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~ 143 (331)
T 4hkt_A 66 AVVICTPTDTHADLIERFARAGKAIFCE--KPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGE 143 (331)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC--SCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred EEEEeCCchhHHHHHHHHHHcCCcEEEe--cCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCc
Confidence 5788998888888889999999999864 3777777665555 4444455678888888999999999987654 6
Q ss_pred EEEEEEE
Q 040627 77 VHRIVGS 83 (267)
Q Consensus 77 I~~i~GI 83 (267)
|..++..
T Consensus 144 i~~~~~~ 150 (331)
T 4hkt_A 144 VEMVTIT 150 (331)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 7776643
No 48
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=93.62 E-value=0.13 Score=47.01 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=61.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+...+||++||||+. -| |++...++.++| +++.....+.+-..--.|.+..+++++..|. +
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGkhVl~-EK-P~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 145 (359)
T 3e18_A 68 AVLIATPNDSHKELAISALEAGKHVVC-EK-PVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGE 145 (359)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE-ES-SCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTTSS
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEe-eC-CCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCCCC
Confidence 578899988888888999999999994 33 777776665555 4444455677777788899999999887553 6
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++.-+.
T Consensus 146 i~~~~~~~~ 154 (359)
T 3e18_A 146 MFHLESRVH 154 (359)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 777776543
No 49
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=93.60 E-value=0.16 Score=45.72 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=62.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+..++||++||||+.= +|++...++.++|. ++.....+.+-..---|.+..+++.+..|. +
T Consensus 76 ~V~I~tP~~~H~~~~~~al~aGkhVl~E--KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~ 153 (318)
T 3oa2_A 76 YVSICSPNYLHYPHIAAGLRLGCDVICE--KPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKSPH 153 (318)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC--SSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHS-CSS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEE--CCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhcCCCCc
Confidence 4678898888888889999999998864 47888877666654 444455567777778899999999987663 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++..+.
T Consensus 154 i~~v~~~~~ 162 (318)
T 3oa2_A 154 KYEVDLTYI 162 (318)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 888886654
No 50
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=93.48 E-value=0.2 Score=47.24 Aligned_cols=81 Identities=12% Similarity=-0.041 Sum_probs=57.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---h-CCCceEEeeeccccccchHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---S-RPRRIRYESTVGAGLPVIASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~-~~~~~~yEatVggGiPii~~l~~~~~~gd-- 75 (267)
+|+.||+...+.+...+||++||||+.- +|++...++.++|. + +++.+. -+-..--.|.+..+++++..|.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~E--KP~a~~~~ea~~l~~~a~~~g~~~~-v~~~~r~~p~~~~~~~~i~~G~iG 170 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGME--VSGAITLEECWDYVKVSEQTGVPLM-ALENVCYRRDVMAILNMVRKGMFG 170 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEC--CCCCSSHHHHHHHHHHHHHHCCCEE-ECCGGGGCHHHHHHHHHHHTTTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEe--CCCcCCHHHHHHHHHHHHHhCCeEE-EEeccccCHHHHHHHHHHHcCCCC
Confidence 5788999888888889999999999985 57888877666553 3 344432 1222233488899999887654
Q ss_pred cEEEEEEEec
Q 040627 76 PVHRIVGSLS 85 (267)
Q Consensus 76 ~I~~i~GIlN 85 (267)
+|..+++.+.
T Consensus 171 ~i~~v~~~~~ 180 (444)
T 2ixa_A 171 ELVHGTGGYQ 180 (444)
T ss_dssp SEEEEEECCB
T ss_pred CeEEEEEEEe
Confidence 7888886544
No 51
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=93.33 E-value=0.21 Score=46.18 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+...+||++||||.. -+|++...++.++|. ++.......+-..=--|.+..+++++..|. +
T Consensus 99 ~V~I~tp~~~H~~~~~~al~aGkhVl~--EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~ 176 (412)
T 4gqa_A 99 VVDITSPNHLHYTMAMAAIAAGKHVYC--EKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIARGDIGE 176 (412)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--ESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHHHHTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHHcCCCeEe--ecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHHhcCCcCC
Confidence 466789888888888999999999986 568888877666654 333344455566667799999999987665 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..+++.++
T Consensus 177 i~~~~~~~~ 185 (412)
T 4gqa_A 177 PVRFRGTFD 185 (412)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 888887664
No 52
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=93.03 E-value=0.41 Score=43.12 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=61.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+=||+...+.+...+||++||||.. -+|+|...++.++|. ++.......+-.-=--|.+..+++.+..|. +
T Consensus 97 aV~IatP~~~H~~~a~~al~aGkhVl~--EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G~iG~ 174 (393)
T 4fb5_A 97 VVSVTTPNQFHAEMAIAALEAGKHVWC--EKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDGVIGR 174 (393)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--CSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred EEEECCChHHHHHHHHHHHhcCCeEEE--ccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcCCCcc
Confidence 467789888888888999999999987 678888887766654 333344455555566699999999987654 7
Q ss_pred EEEEEEEec
Q 040627 77 VHRIVGSLS 85 (267)
Q Consensus 77 I~~i~GIlN 85 (267)
|..++.-+.
T Consensus 175 i~~v~~~~~ 183 (393)
T 4fb5_A 175 VNHVRVEMD 183 (393)
T ss_dssp EEEEEEEEE
T ss_pred ccceeeeec
Confidence 777775543
No 53
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=92.92 E-value=0.22 Score=45.58 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=57.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeecccc-ccchHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAG-LPVIASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggG-iPii~~l~~~~~~gd-- 75 (267)
+|+-||+...+.+...+||++||||+.= +|++...++.++| +++.....+.+-.--- .|.+..+++++..|.
T Consensus 91 ~V~I~tp~~~H~~~~~~al~aGkhVl~E--KPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~g~iG 168 (361)
T 3u3x_A 91 LIVSAAVSSERAELAIRAMQHGKDVLVD--KPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIG 168 (361)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEE--SCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHTTTTS
T ss_pred EEEEeCChHHHHHHHHHHHHCCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHcCCCC
Confidence 4677888887888889999999999974 3677776665555 4454444555554444 799999999987653
Q ss_pred cEEEEEEE
Q 040627 76 PVHRIVGS 83 (267)
Q Consensus 76 ~I~~i~GI 83 (267)
+|..+++.
T Consensus 169 ~i~~~~~~ 176 (361)
T 3u3x_A 169 EVVHIVGL 176 (361)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEe
Confidence 67777754
No 54
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=92.85 E-value=0.44 Score=44.85 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=64.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcC------CcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhc
Q 040627 2 AFVDCSASSETVEILTQAVDLG------CCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILS 72 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G------~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~ 72 (267)
+|+.||+...+.+....||++| |||+.- +|++...++.++| +++.....+.+-..--.|.+..+++++.
T Consensus 92 ~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~E--KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 169 (438)
T 3btv_A 92 MIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVE--WALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS 169 (438)
T ss_dssp EEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEE--SSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCCcccceeEEec--CcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence 5788998888888889999999 999973 4788887665555 4455566677777778899999999987
Q ss_pred CCC--cEEEEEEEec
Q 040627 73 SGD--PVHRIVGSLS 85 (267)
Q Consensus 73 ~gd--~I~~i~GIlN 85 (267)
.|. +|..++...+
T Consensus 170 ~G~iG~i~~v~~~~~ 184 (438)
T 3btv_A 170 QGYIGDINSIEIAGN 184 (438)
T ss_dssp TTTTCSEEEEEEEEE
T ss_pred cCCCCCcEEEEEEEc
Confidence 665 7888887653
No 55
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=92.84 E-value=0.45 Score=42.86 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=60.1
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---Hh---CCCceEEeeeccccccchHHHHHhhcCCC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VS---RPRRIRYESTVGAGLPVIASLNRILSSGD 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~---~~~~~~yEatVggGiPii~~l~~~~~~gd 75 (267)
+|+=||+...+.+...+||++||||.. -+|++...++.++| ++ ++......+-..=--|.+..+++++..|.
T Consensus 78 aV~I~tP~~~H~~~~~~al~aGkhVl~--EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~ 155 (390)
T 4h3v_A 78 LVDVCTPGDSHAEIAIAALEAGKHVLC--EKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVADGK 155 (390)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE--ESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHTTS
T ss_pred EEEEeCChHHHHHHHHHHHHcCCCcee--ecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHHcCC
Confidence 466789888888888999999999986 46888888877776 32 23344445555556799999999987654
Q ss_pred --cEEEEEEEe
Q 040627 76 --PVHRIVGSL 84 (267)
Q Consensus 76 --~I~~i~GIl 84 (267)
+|..+++-+
T Consensus 156 iG~i~~v~~~~ 166 (390)
T 4h3v_A 156 IGTVRHVRAQY 166 (390)
T ss_dssp SCSEEEEEEEE
T ss_pred CCcceeeEEEE
Confidence 677777644
No 56
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=92.62 E-value=0.43 Score=43.51 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=62.2
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---h-CCCceEEeeeccccccchHHHHHhhcCCC--
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---S-RPRRIRYESTVGAGLPVIASLNRILSSGD-- 75 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~-~~~~~~yEatVggGiPii~~l~~~~~~gd-- 75 (267)
+|+-||+...+.+...+||++||||+.- +|++...++.+++. + +++.+.+.+...--.|.+..+++++..|.
T Consensus 90 ~V~i~tp~~~h~~~~~~al~aGk~Vl~E--KPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~g~iG 167 (357)
T 3ec7_A 90 VVIITASNEAHADVAVAALNANKYVFCE--KPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIG 167 (357)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEE--SSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHHTTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEee--cCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhcCCCC
Confidence 5778998888888889999999999853 37888877666654 3 45567688888889999999999887543
Q ss_pred cEEEEEEE
Q 040627 76 PVHRIVGS 83 (267)
Q Consensus 76 ~I~~i~GI 83 (267)
+|..++..
T Consensus 168 ~i~~v~~~ 175 (357)
T 3ec7_A 168 QPLMVHGR 175 (357)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEE
Confidence 67777653
No 57
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=92.56 E-value=0.29 Score=44.31 Aligned_cols=81 Identities=10% Similarity=0.128 Sum_probs=60.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCC--c
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGD--P 76 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd--~ 76 (267)
+|+-||+...+.+...+||++||||+.- +|++...++.+++ +++.....+.+-..--.|.+..+++++..|. +
T Consensus 78 ~V~i~tp~~~h~~~~~~al~~gk~v~~E--KP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 155 (354)
T 3q2i_A 78 IVILTTPSGLHPTQSIECSEAGFHVMTE--KPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGR 155 (354)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC--SSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCCEEEe--CCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCc
Confidence 5788998888888889999999999964 4777776665555 4443444567777778899999999987654 6
Q ss_pred EEEEEEEe
Q 040627 77 VHRIVGSL 84 (267)
Q Consensus 77 I~~i~GIl 84 (267)
|..++.-+
T Consensus 156 i~~v~~~~ 163 (354)
T 3q2i_A 156 IYMVNVNV 163 (354)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 77776544
No 58
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=92.49 E-value=0.075 Score=47.80 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=46.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCH---HHHHHHHhC-CCceEEeeeccccccchHHHHHhhcC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTK---EDYDKLVSR-PRRIRYESTVGAGLPVIASLNRILSS 73 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~---~~l~~la~~-~~~~~yEatVggGiPii~~l~~~~~~ 73 (267)
+|++||+...+.+...+++++|+||+.- |-+.+... .++.+++++ +..+.+ +. +-.|-+..+++.+..
T Consensus 68 vViiatp~~~h~~~~~~al~aG~~Vi~e-kP~~a~~~~~~~~l~~~a~~~g~~~~v-~~--~~~p~~~~~~~~i~~ 139 (304)
T 3bio_A 68 VALVCSPSREVERTALEILKKGICTADS-FDIHDGILALRRSLGDAAGKSGAAAVI-AS--GWDPGSDSVVRTLMQ 139 (304)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEC-CCCGGGHHHHHHHHHHHHHHHTCEEEC-SC--BBTTBHHHHHHHHHH
T ss_pred EEEECCCchhhHHHHHHHHHcCCeEEEC-CCCCCCCHHHHHHHHHHHHhCCCEEEE-eC--CCCHHHHHHHHHHHC
Confidence 6889999888888889999999999975 43324443 444444443 444333 32 567889988888754
No 59
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=92.41 E-value=0.1 Score=46.74 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=46.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASL 67 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l 67 (267)
|+||+|+.......++.++++|+|||+.+.+.-....+++++++++ ..+.|.+...=|+=++.-+
T Consensus 76 VVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~-~~vv~a~N~s~Gv~l~~~~ 140 (272)
T 4f3y_A 76 YLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK-IALVFSANMSVGVNVTMKL 140 (272)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT-SEEEECSCCCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEECCCCHHHHHHHHH
Confidence 7899996665566779999999999999987543334555555544 4678887777776655444
No 60
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=91.65 E-value=0.3 Score=43.52 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=56.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHH---HhCCCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL---VSRPRRIRYESTVGAGLPVIASLNRILSSGDPVH 78 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~l---a~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~ 78 (267)
+|+.||+...+.+....||++|+||+. .| |++...++.+++ +++.....+.+-..--.|.+..+++.+. ++.
T Consensus 68 ~V~i~tp~~~h~~~~~~al~~G~~v~~-eK-P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~k~~i~---~~~ 142 (319)
T 1tlt_A 68 AVFVHSSTASHFDVVSTLLNAGVHVCV-DK-PLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLA---TAA 142 (319)
T ss_dssp EEEECSCTTHHHHHHHHHHHTTCEEEE-ES-SSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCHHHHHHTTTGG---GCC
T ss_pred EEEEeCCchhHHHHHHHHHHcCCeEEE-eC-CCCCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHhC---CCc
Confidence 578999988888888999999999995 44 777776665554 4444455677888888999999999872 355
Q ss_pred EEE
Q 040627 79 RIV 81 (267)
Q Consensus 79 ~i~ 81 (267)
.++
T Consensus 143 ~i~ 145 (319)
T 1tlt_A 143 SLR 145 (319)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 61
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=89.09 E-value=0.22 Score=46.75 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=42.0
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIR 52 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~ 52 (267)
+|+-++.+...-.....|+++||||..|||..+....+++.+++++ +.++.
T Consensus 88 ~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~ll 139 (376)
T 3a06_A 88 ITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELI 139 (376)
T ss_dssp EEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEE
Confidence 5677787776666678999999999999999999999999888764 55663
No 62
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=88.83 E-value=0.64 Score=41.09 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=52.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH---hCCCceEEeeeccccccchHHHHHhh
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV---SRPRRIRYESTVGAGLPVIASLNRIL 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la---~~~~~~~yEatVggGiPii~~l~~~~ 71 (267)
+|+-||+...+.+...++|++|+||+ +-| |++...++.+++. +++....+.+-.----|.+..+++.+
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl-~EK-P~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i 139 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLNLGVHVY-VDK-PLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKNNA 139 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEE-ECS-SSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHC
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEE-EcC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHHHc
Confidence 57789998888888899999999987 444 7778776666553 44444557777777789999999976
No 63
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=88.48 E-value=0.4 Score=43.35 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=46.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASL 67 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l 67 (267)
|+||+|........++.++++|++||+..-+.-....+++++++++ ..+.|.+...=|+=++.-+
T Consensus 91 VvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~-~~~~~a~N~SiGv~ll~~l 155 (288)
T 3ijp_A 91 GILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKY-TTIVKSGNMSLGVNLLANL 155 (288)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTT-SEEEECSCCCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCc-CCEEEECCCcHHHHHHHHH
Confidence 7899996555556789999999999999887543345556666554 5678877777776554443
No 64
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=86.84 E-value=0.66 Score=40.76 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=46.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC--CCceEEeeeccccccchHHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR--PRRIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~--~~~~~yEatVggGiPii~~l~~ 69 (267)
|+||+|........++.++++|+|+|..--+......+++++++++ +..+.|....+-|+=++.-+-.
T Consensus 48 vvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHH
T ss_pred EEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHH
Confidence 7999997776777789999999999987554322234556666653 5677887776666555444443
No 65
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=85.73 E-value=0.31 Score=44.27 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=43.6
Q ss_pred eEEEcCCChHHHHHHHHHHHc--CCcEEccCCcccCCCH-H--HHHHHHhC-CCceEEeeeccccccchHHHHHhh
Q 040627 2 AFVDCSASSETVEILTQAVDL--GCCIVLANKKPLTSTK-E--DYDKLVSR-PRRIRYESTVGAGLPVIASLNRIL 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~--G~hVVTaNK~~~a~~~-~--~l~~la~~-~~~~~yEatVggGiPii~~l~~~~ 71 (267)
++++||+...+.+...+++++ |+||++.|...+.-+. + .+.++++. +..+. ...-++++|++..+++..
T Consensus 74 vV~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~~g~~~~p~v~~~~~~~~~~~~lv-a~~g~~~ipl~~a~~~~~ 148 (312)
T 1nvm_B 74 FVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMV-TCGGQATIPMVAAVSRVA 148 (312)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEECSTTCSSCBCCHHHHTTTTTTCSEEECC-CHHHHHHHHHHHHHHTTS
T ss_pred EEEECCChHHHHHHHHHHHHhCCCCEEEEcCcccccccccCccCHHHHHhccCCcEE-EeCCcccchHHHHhhhhc
Confidence 689999866666777999999 9999998877654321 1 22223222 22222 111223699999997754
No 66
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=84.46 E-value=0.77 Score=40.78 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=35.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeee
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYEST 56 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEat 56 (267)
|+||+|........++.++++|+|||...-+.-....+++.+++++ ..+.|...
T Consensus 75 vVIDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~-~~vv~a~N 128 (273)
T 1dih_A 75 VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD-IAIVFAAN 128 (273)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT-SCEEECSC
T ss_pred EEEEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCC-CCEEEEec
Confidence 7899997665666789999999999997774322223344444333 35666553
No 67
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=78.41 E-value=0.85 Score=39.99 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=44.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~ 69 (267)
|+||+|..+.....++ +++|+|||+.+.+.-....+++++++++ ..+.|.+...=|+=++.-+-.
T Consensus 57 VvIDft~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~-~~v~~a~N~S~Gv~l~~~~~~ 121 (243)
T 3qy9_A 57 VAIDFSNPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQN-MPVFFSANMSYGVHALTKILA 121 (243)
T ss_dssp EEEECSCHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTT-SEEEECSSCCHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhc-CCEEEECCccHHHHHHHHHHH
Confidence 6899996554445455 9999999999987543345556665554 577888777777766554443
No 68
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=76.38 E-value=2 Score=39.05 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=25.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKK 32 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~ 32 (267)
+|++||+...+.+....++++|+||+ .+|.
T Consensus 82 vV~~aTp~~~h~~~a~~~l~aGk~Vi-~sap 111 (334)
T 2czc_A 82 IIVDATPGGIGAKNKPLYEKAGVKAI-FQGG 111 (334)
T ss_dssp EEEECCSTTHHHHHHHHHHHHTCEEE-ECTT
T ss_pred EEEECCCccccHHHHHHHHHcCCceE-eecc
Confidence 68999998877777789999999999 5653
No 69
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=66.87 E-value=0.14 Score=48.66 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred eEEEcCCChHHH-HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627 2 AFVDCSASSETV-EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI 80 (267)
Q Consensus 2 vvVd~t~~~~~~-~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i 80 (267)
|++.|....... ....+ | +.+.|+.+++.+++.. --+.|++++..+.-.....+| |-.+..+
T Consensus 288 IliP~A~~n~i~~~~a~~-l-~ak~V~EgAN~p~t~~--a~~~l~~~Gi~~~PD~~aNaG-------------GV~~s~~ 350 (415)
T 2tmg_A 288 ILVPAALEGAIHAGNAER-I-KAKAVVEGANGPTTPE--ADEILSRRGILVVPDILANAG-------------GVTVSYF 350 (415)
T ss_dssp EEEECSSTTSBCHHHHTT-C-CCSEEECCSSSCBCHH--HHHHHHHTTCEEECHHHHTCH-------------HHHHHHH
T ss_pred EEEecCCcCccCcccHHH-c-CCeEEEeCCCcccCHH--HHHHHHHCCCEEEChHHHhCC-------------CceEEEE
Confidence 688887655332 22222 2 7889999999998733 334466777655443333332 1222233
Q ss_pred EEEeccchHH-----HhhcccC--CCCHHHHHHHHHHcCC
Q 040627 81 VGSLSGTLGY-----VMSEVED--GKPLSQVVKAAKSLGY 113 (267)
Q Consensus 81 ~GIlNGT~Ny-----ILs~m~~--g~~f~eal~~Aq~~Gy 113 (267)
|.+.|+|.+| |++++++ ..+|.++++.||+.|+
T Consensus 351 E~vqN~~~~~w~~e~v~~~l~~~m~~~~~~v~~~A~~~g~ 390 (415)
T 2tmg_A 351 EWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 390 (415)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4445666666 9999976 6899999999999874
No 70
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=62.59 E-value=8.2 Score=33.65 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=47.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNR 69 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~ 69 (267)
|+||-|..+..-..++.++++|+++|..--+.-....+.+++++++ ..+.|.....=|+=++.-+-.
T Consensus 56 VvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNfSlGvnll~~l~~ 122 (228)
T 1vm6_A 56 VVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNFSIGINVLKRFLS 122 (228)
T ss_dssp EEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCCCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEeccccHHHHHHHHHHH
Confidence 7999997666667789999999999988776544444555555444 678887777766655544433
No 71
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=58.40 E-value=12 Score=33.79 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=42.5
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHh-CCCceEEeeeccccccch
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRRIRYESTVGAGLPVI 64 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~-~~~~~~yEatVggGiPii 64 (267)
+||.|++........+.|+++|+|+|+..= ......++++.++ ++..+..++-+.-|+.=+
T Consensus 80 vVi~~~p~~~~~~v~~~~~~~g~~yvD~s~--~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~ 141 (365)
T 3abi_A 80 LVIGALPGFLGFKSIKAAIKSKVDMVDVSF--MPENPLELRDEAEKAQVTIVFDAGFAPGLSNI 141 (365)
T ss_dssp EEEECCCGGGHHHHHHHHHHHTCEEEECCC--CSSCGGGGHHHHHHTTCEEECCCBTTTBHHHH
T ss_pred EEEEecCCcccchHHHHHHhcCcceEeeec--cchhhhhhhhhhccCCceeeecCCCCCchHHH
Confidence 678888776555556999999999999652 2223455666664 567888887777666433
No 72
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=57.19 E-value=34 Score=31.53 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=44.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEE-ccCCcccCC---CH---HHHHHHH-hCCCceEEeeeccccccchHHHHHh--h
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIV-LANKKPLTS---TK---EDYDKLV-SRPRRIRYESTVGAGLPVIASLNRI--L 71 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVV-TaNK~~~a~---~~---~~l~~la-~~~~~~~yEatVggGiPii~~l~~~--~ 71 (267)
+||.|++..........+++.|+||+ +++-..... .+ ..+.+.+ +.+..+.......-| +..+.-. .
T Consensus 79 vVin~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG---~~~l~a~~~~ 155 (405)
T 4ina_A 79 IVLNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPG---VTNVFCAYAQ 155 (405)
T ss_dssp EEEECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTB---HHHHHHHHHH
T ss_pred EEEECCCcccChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCcc---HHHHHHHHHH
Confidence 67888876655556699999999999 766443311 11 2344444 456666666554444 3333221 1
Q ss_pred c-CCCcEEEEE
Q 040627 72 S-SGDPVHRIV 81 (267)
Q Consensus 72 ~-~gd~I~~i~ 81 (267)
. .-++|..|.
T Consensus 156 ~~~~~~i~~i~ 166 (405)
T 4ina_A 156 KHYFDEIHEID 166 (405)
T ss_dssp HHTCSEEEEEE
T ss_pred HhccCcccEEE
Confidence 1 136777776
No 73
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=50.99 E-value=12 Score=33.89 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=24.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLAN 30 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaN 30 (267)
++++||+.....+..+.++++|++||...
T Consensus 81 vV~~atp~~~~~~~a~~~l~aG~~VId~s 109 (337)
T 1cf2_P 81 IVIDCTPEGIGAKNLKMYKEKGIKAIFQG 109 (337)
T ss_dssp EEEECCSTTHHHHHHHHHHHHTCCEEECT
T ss_pred EEEECCCchhhHHHHHHHHHcCCEEEEec
Confidence 68999998877777799999999977543
No 74
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=44.44 E-value=5.2 Score=29.83 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=31.1
Q ss_pred eeccccccchHHHHHhhcCCCcEEEEEEEeccchHHHhhcccCCCCHHHHHHHH
Q 040627 55 STVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAA 108 (267)
Q Consensus 55 atVggGiPii~~l~~~~~~gd~I~~i~GIlNGT~NyILs~m~~g~~f~eal~~A 108 (267)
.-+.+|+|+.+.++-.... ... ..+.--..-+..++++|.+|++|+++.
T Consensus 24 ~ll~sGi~l~~aL~~~~~~---~~~--~~~~~~~~~i~~~l~~G~sls~al~~~ 72 (116)
T 2whn_A 24 TMLGAGLTLLQALAILERQ---TEN--RKFREILKQVRTDVEGGMAFSEALSKH 72 (116)
T ss_dssp HHHHHTCCHHHHHHHHTTS---CCS--HHHHHHHHHHHHHHHTTCCHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHH---hCC--HHHHHHHHHHHHHHHCCCcHHHHHHHC
Confidence 3467899999999865432 100 011122344556667899999999864
No 75
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=42.07 E-value=5.4 Score=30.27 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred eccccccchHHHHHhhcCCCcEEEEEEEeccchHHHhhcccCCCCHHHHHHH
Q 040627 56 TVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKA 107 (267)
Q Consensus 56 tVggGiPii~~l~~~~~~gd~I~~i~GIlNGT~NyILs~m~~g~~f~eal~~ 107 (267)
-+.+|+|+.+.++-....-.+ ..+.-...-|..++++|.+|++||++
T Consensus 24 ll~sGv~l~~aL~~~~~~~~~-----~~l~~~l~~i~~~l~~G~sls~Al~~ 70 (123)
T 3c1q_A 24 LVQSGMPLEECLRAVAEQSEK-----PRIRTMLVAVRAKVTEGYTLSDSLGD 70 (123)
T ss_dssp HHHTTCCHHHHHHHHHHTCSC-----HHHHHHHHHHHHHHHTTCCHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHCCCCHHHHHHh
Confidence 467899999999876532110 01112344555667789999999975
No 76
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=38.54 E-value=23 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.9
Q ss_pred cchHHHhhcccCCCCHHHHHHHHHHcCCCCC-CcCCCCCCcc
Q 040627 86 GTLGYVMSEVEDGKPLSQVVKAAKSLGYTEP-DPRDDLSGMD 126 (267)
Q Consensus 86 GT~NyILs~m~~g~~f~eal~~Aq~~GyaE~-DP~~Dl~G~D 126 (267)
.|.|-+++.+ ..+++.|.+.|+-+. ||..++.|..
T Consensus 65 ~t~~~~~~~l------~~i~~~Av~~~~i~~~NP~~~v~~~~ 100 (106)
T 2khv_A 65 ETASRLRGRI------ESVLDWATVRGYREGDNPARWRGYLE 100 (106)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHTSSCSCCTTSCSSTTT
T ss_pred HHHHHHHHHH------HHHHHHHHHcCCcCCCCchHHHHHHH
Confidence 4666665544 468889999999999 9999988753
No 77
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=35.04 E-value=36 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCC
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPR 49 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~ 49 (267)
..+.+||++|++|||.=-.+++.+.+ +.+++++|+
T Consensus 94 ~~i~~Al~~G~~Vvsglh~~l~~~pe-l~~~A~~g~ 128 (349)
T 2obn_A 94 IELKTALQAGMSLVNGLHTPLANIPD-LNALLQPGQ 128 (349)
T ss_dssp HHHHHHHHTTCEEEECSSSCCTTCHH-HHHHCCTTC
T ss_pred HHHHHHHHcCCcEEeCccchhhCCHH-HHHHHHcCC
Confidence 56899999999999998877666555 777776643
No 78
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=34.85 E-value=16 Score=33.27 Aligned_cols=28 Identities=14% Similarity=-0.020 Sum_probs=22.9
Q ss_pred eEEEcCCChHHHHHHH-HHHHcCCcEEcc
Q 040627 2 AFVDCSASSETVEILT-QAVDLGCCIVLA 29 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~-~aL~~G~hVVTa 29 (267)
++++||++....+... .++++|++||..
T Consensus 84 iV~eatg~~~s~~~a~~~~l~aG~~VI~s 112 (343)
T 2yyy_A 84 IVVDGAPKKIGKQNLENIYKPHKVKAILQ 112 (343)
T ss_dssp EEEECCCTTHHHHHHHHTTTTTTCEEEEC
T ss_pred EEEECCCccccHHHHHHHHHHCCCEEEEC
Confidence 6899998886666664 899999999963
No 79
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=33.27 E-value=34 Score=31.43 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhC-CCceE
Q 040627 14 EILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSR-PRRIR 52 (267)
Q Consensus 14 ~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~-~~~~~ 52 (267)
..+++||++|++|||.=-.+++ ..+++.+++++ |+.+.
T Consensus 110 ~~I~~Al~~G~nVvsglh~~l~-~~pel~~~A~~~Gv~i~ 148 (350)
T 2g0t_A 110 TLVKKALSLGMDVISGLHFKIS-QQTEFLKIAHENGTRII 148 (350)
T ss_dssp HHHHHHHHTTCEEEECCCC--C-CHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCcEEeCChhhhh-CCHHHHHHHHHCCCEEE
Confidence 4579999999999999888744 45557777764 55444
No 80
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=32.56 E-value=50 Score=30.04 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=36.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHH-hCCCceEEeeeccccccchHH
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLV-SRPRRIRYESTVGAGLPVIAS 66 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la-~~~~~~~yEatVggGiPii~~ 66 (267)
+||.|++........+.+++.|+|||...=. ......+.+.+ ++|..+.-+. |--|-+..
T Consensus 80 vVIn~~P~~~~~~v~~a~l~~G~~~vD~s~~--~~~~~~l~~~Ak~aG~~~l~g~---G~dPG~~~ 140 (365)
T 2z2v_A 80 LVIGALPGFLGFKSIKAAIKSKVDMVDVSFM--PENPLELRDEAEKAQVTIVFDA---GFAPGLSN 140 (365)
T ss_dssp CEEECCCHHHHHHHHHHHHHTTCCEEECCCC--SSCGGGGHHHHHHTTCEEECSC---BTTTBHHH
T ss_pred EEEECCChhhhHHHHHHHHHhCCeEEEccCC--cHHHHHHHHHHHHcCCEEEECC---CCcchHHH
Confidence 5778887654445569999999999985531 22334445544 4666665333 44555543
No 81
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=31.82 E-value=29 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=24.7
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANK 31 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK 31 (267)
++++||+.....+....++++|++||...-
T Consensus 80 vVf~atp~~~s~~~a~~~~~aG~~VId~s~ 109 (350)
T 2ep5_A 80 VVLSALPNELAESIELELVKNGKIVVSNAS 109 (350)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEECCc
Confidence 578999877666667999999999998764
No 82
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=29.57 E-value=42 Score=24.09 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCCCCcCCCC
Q 040627 101 LSQVVKAAKSLGYTEPDPRDDL 122 (267)
Q Consensus 101 f~eal~~Aq~~GyaE~DP~~Dl 122 (267)
+..+++.|.+.|+.+.||..++
T Consensus 79 l~~i~~~Av~~g~i~~NP~~~v 100 (112)
T 3lys_A 79 VRASIQCLIEEGRLQKDFTTRA 100 (112)
T ss_dssp HHHHHHHHHHTTSCSSCTTSST
T ss_pred HHHHHHHHHHCCCcccCccccc
Confidence 4568899999999999998665
No 83
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=28.08 E-value=43 Score=30.67 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=25.6
Q ss_pred EEEcCCChHH----HHHHHHHHHcCCcEEccCCcccCC-CHHHHHHHHhC-CCc
Q 040627 3 FVDCSASSET----VEILTQAVDLGCCIVLANKKPLTS-TKEDYDKLVSR-PRR 50 (267)
Q Consensus 3 vVd~t~~~~~----~~~~~~aL~~G~hVVTaNK~~~a~-~~~~l~~la~~-~~~ 50 (267)
++=||++..+ .+..++||++||||..= |- ++. ..+++.++|++ |+.
T Consensus 70 v~i~~p~~~h~~~~~~~a~~al~aGkhVl~E-KP-l~~~ea~~l~~~A~~~g~~ 121 (372)
T 4gmf_A 70 ACIVVRSTVAGGAGTQLARHFLARGVHVIQE-HP-LHPDDISSLQTLAQEQGCC 121 (372)
T ss_dssp EEECCC--CTTSHHHHHHHHHHHTTCEEEEE-SC-CCHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCcccchhHHHHHHHHHHcCCcEEEe-cC-CCHHHHHHHHHHHHHcCCE
Confidence 3446665533 45569999999999864 54 421 23344444544 443
No 84
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=27.90 E-value=37 Score=30.67 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=24.6
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANK 31 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK 31 (267)
++++|++.....+....++++|++||++.-
T Consensus 86 vV~~atp~~~~~~~a~~~~~aG~~VId~s~ 115 (354)
T 1ys4_A 86 IVFSALPSDLAKKFEPEFAKEGKLIFSNAS 115 (354)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEECCc
Confidence 688999877666667899999999998653
No 85
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=27.62 E-value=36 Score=24.53 Aligned_cols=30 Identities=7% Similarity=0.257 Sum_probs=24.7
Q ss_pred cCCCCCCcchHHHHHHHHH---HhCCCCCCCce
Q 040627 118 PRDDLSGMDVARKALILAR---LLGMRINIDSI 147 (267)
Q Consensus 118 P~~Dl~G~Daa~Kl~ILa~---~~g~~i~~~dv 147 (267)
.-.|+.|||+..-+-++++ .||+.++.+++
T Consensus 27 ~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l 59 (87)
T 2kjs_A 27 SANDIDAWDSLSHMNLIVSLEVHYKIKFALGEL 59 (87)
T ss_dssp CSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcccCCCCChHHHHHHHHHHHHHhCceecHHHH
Confidence 3457889999999999988 29998887765
No 86
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=27.45 E-value=49 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcE
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCI 26 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hV 26 (267)
++|+||+...+.+.+++++++|+|+
T Consensus 67 ~viI~tP~~~~~~~~~ea~~~Gi~~ 91 (288)
T 2nu8_A 67 ASVIYVPAPFCKDSILEAIDAGIKL 91 (288)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCSE
T ss_pred EEEEecCHHHHHHHHHHHHHCCCCE
Confidence 5789999988888899999999996
No 87
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=24.28 E-value=57 Score=28.81 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=29.9
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCc-EEccCCcccCCCHHHHHHHHhC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCC-IVLANKKPLTSTKEDYDKLVSR 47 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~h-VVTaNK~~~a~~~~~l~~la~~ 47 (267)
++|+|++.....+.+++++++|++ +|--....--...+++.+++++
T Consensus 73 v~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~ 119 (294)
T 2yv1_A 73 ASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAED 119 (294)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred EEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999888778888999999999 5532222211123456666553
No 88
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=24.15 E-value=66 Score=28.43 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=30.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCc-EEccCCcccCCCHHHHHHHHhC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCC-IVLANKKPLTSTKEDYDKLVSR 47 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~h-VVTaNK~~~a~~~~~l~~la~~ 47 (267)
++|++++.....+.+++++++|++ +|--....-....+++.+++++
T Consensus 74 vaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~ 120 (297)
T 2yv2_A 74 TSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQ 120 (297)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999888888888999999999 5532322211123456665553
No 89
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=23.57 E-value=56 Score=22.71 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=24.4
Q ss_pred cchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCC
Q 040627 86 GTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSG 124 (267)
Q Consensus 86 GT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G 124 (267)
.|.|-+++. +..+++.|.+.|+.+.||..++.-
T Consensus 64 ~t~~~~~~~------l~~~~~~A~~~~~i~~NP~~~v~~ 96 (108)
T 2kob_A 64 NTLKAIRNT------ASQIFRLAIENRAIDFNPADYVRI 96 (108)
T ss_dssp HHHHHHHHH------HHHHHHHHHHTTSSSSCGGGTCCC
T ss_pred HHHHHHHHH------HHHHHHHHHHcCCcccCccccCcC
Confidence 355555544 456889999999999999887653
No 90
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=23.28 E-value=45 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=22.7
Q ss_pred chHHHhhcccCCCCHHHHHHHHHHcCCC
Q 040627 87 TLGYVMSEVEDGKPLSQVVKAAKSLGYT 114 (267)
Q Consensus 87 T~NyILs~m~~g~~f~eal~~Aq~~Gya 114 (267)
|+=|.+-.+..|.+.++|++++++.||.
T Consensus 116 ~~l~al~l~~~g~~~~~a~~~~~~~g~~ 143 (156)
T 2f46_A 116 SLLWGFRRAAEGMPVDEIIRRAQAAGVN 143 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 4446666667899999999999999974
No 91
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=22.43 E-value=52 Score=29.73 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=24.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEccCC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLANK 31 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK 31 (267)
+++.|++.....+....++++|++||...-
T Consensus 71 vV~~a~g~~~s~~~a~~~~~aG~~VId~Sa 100 (345)
T 2ozp_A 71 ILVLALPHGVFAREFDRYSALAPVLVDLSA 100 (345)
T ss_dssp EEEECCCTTHHHHTHHHHHTTCSEEEECSS
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCEEEEcCc
Confidence 688999888766667899999999997554
No 92
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.61 E-value=1.2e+02 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCCCcchHHHHHHHHHH---hCCCCCCCceEe
Q 040627 121 DLSGMDVARKALILARL---LGMRINIDSIKI 149 (267)
Q Consensus 121 Dl~G~Daa~Kl~ILa~~---~g~~i~~~dv~~ 149 (267)
|+..||+..-+-++..+ ||+.++.+++..
T Consensus 33 dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~ 64 (83)
T 2amw_A 33 NIPELDSMAVVNVITALEEYFDFSVDDDEISA 64 (83)
T ss_dssp TSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCG
T ss_pred ccCccCHHHHHHHHHHHHHHhCCeeCHHhhhH
Confidence 77788999999999882 999999887643
No 93
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=21.39 E-value=66 Score=21.62 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=21.7
Q ss_pred cchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCC
Q 040627 86 GTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLS 123 (267)
Q Consensus 86 GT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~ 123 (267)
.|.|-+++. +..+++.|.+.|+.+.||..++.
T Consensus 65 ~t~~~~~~~------l~~~~~~a~~~~~i~~nP~~~v~ 96 (103)
T 2oxo_A 65 ASAKLIRST------LSDAFREAIAEGHITTNHVAATR 96 (103)
T ss_dssp HHHHHHHHH------HHHHHHHHHHTTSCSSCTTC---
T ss_pred HHHHHHHHH------HHHHHHHHHHcCCCCCChHhhcC
Confidence 344544444 45688899999999999987664
No 94
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=21.05 E-value=61 Score=29.43 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.4
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCc--EEccC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCC--IVLAN 30 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~h--VVTaN 30 (267)
+++|||+.....+.....|++|.. ||++-
T Consensus 94 vV~e~tg~~~s~e~a~~~l~~GakkVVId~~ 124 (339)
T 3b1j_A 94 LVIESTGVFVTAEGASKHIQAGAKKVLITAP 124 (339)
T ss_dssp EEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred EEEECCCccccHHHHHHHHHcCCcEEEEeCC
Confidence 689999888666667899999999 88875
No 95
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=20.69 E-value=78 Score=22.16 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=23.4
Q ss_pred cchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCC
Q 040627 86 GTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLS 123 (267)
Q Consensus 86 GT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~ 123 (267)
.|.|-+++. +..+++.|.+.|+.+.||..++.
T Consensus 63 ~t~~~~~~~------lr~~~~~A~~~~~i~~nP~~~i~ 94 (111)
T 2kiw_A 63 NYVDSIVAS------TNMIFKYAYDTRLIKAMPSEGIK 94 (111)
T ss_dssp HHHHHHHHH------HHHHHHHHHHTTSCSCCTTTTCC
T ss_pred HHHHHHHHH------HHHHHHHHHHhCChhhCccccCC
Confidence 345555544 44688899999999999987664
No 96
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=20.23 E-value=67 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=23.8
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCc--EEccC
Q 040627 2 AFVDCSASSETVEILTQAVDLGCC--IVLAN 30 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~h--VVTaN 30 (267)
+++|||+.....+.....|++|.. ||++-
T Consensus 95 vV~e~tg~~~s~e~a~~~l~~GakkVVId~~ 125 (339)
T 2x5j_O 95 VVLDCTGVYGSREHGEAHIAAGAKKVLFSHP 125 (339)
T ss_dssp EEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred EEEECCCccccHHHHHHHHHcCCCEEEEecc
Confidence 689999888667777899999998 77754
No 97
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=20.15 E-value=81 Score=28.42 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=23.3
Q ss_pred eEEEcCCChHHHHHHHHHHHcCCcEEcc
Q 040627 2 AFVDCSASSETVEILTQAVDLGCCIVLA 29 (267)
Q Consensus 2 vvVd~t~~~~~~~~~~~aL~~G~hVVTa 29 (267)
++++||+.....+....+++.|+.||.-
T Consensus 80 vV~~aTp~~~s~~~a~~~~~aG~kvV~~ 107 (340)
T 1b7g_O 80 IVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107 (340)
T ss_dssp EEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred EEEECCCCchhHHHHHHHHHcCCeEEEe
Confidence 6899999887777778999999988843
Done!