Query 040628
Match_columns 124
No_of_seqs 115 out of 1976
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 2.4E-24 5.2E-29 126.3 14.5 121 1-122 36-156 (160)
2 KOG0027 Calmodulin and related 99.9 3.1E-23 6.7E-28 122.9 14.1 123 1-123 24-150 (151)
3 PTZ00184 calmodulin; Provision 99.9 6.9E-21 1.5E-25 112.4 14.8 122 1-122 27-148 (149)
4 PTZ00183 centrin; Provisional 99.9 9.9E-21 2.1E-25 112.8 15.0 122 1-122 33-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 6E-20 1.3E-24 106.2 13.5 122 1-122 49-170 (172)
6 KOG0037 Ca2+-binding protein, 99.8 7.9E-18 1.7E-22 102.1 13.9 114 1-121 73-187 (221)
7 KOG0031 Myosin regulatory ligh 99.8 5.5E-17 1.2E-21 93.4 14.0 117 1-121 48-164 (171)
8 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.6E-17 1.2E-21 98.3 12.6 121 1-122 43-175 (193)
9 KOG0030 Myosin essential light 99.7 2.2E-16 4.8E-21 89.5 11.1 121 1-122 27-151 (152)
10 KOG0034 Ca2+/calmodulin-depend 99.7 2.8E-16 6E-21 95.2 12.2 118 2-123 51-176 (187)
11 KOG0036 Predicted mitochondria 99.7 5.6E-15 1.2E-19 97.1 13.3 115 2-122 31-146 (463)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.7 9.3E-15 2E-19 88.7 12.6 116 4-121 11-127 (193)
13 KOG0027 Calmodulin and related 99.6 5.7E-14 1.2E-18 83.3 10.3 102 20-122 7-113 (151)
14 COG5126 FRQ1 Ca2+-binding prot 99.5 3.3E-13 7.2E-18 79.6 11.6 99 21-121 20-119 (160)
15 PTZ00183 centrin; Provisional 99.5 4.8E-13 1E-17 79.6 11.9 100 21-121 17-117 (158)
16 PF13499 EF-hand_7: EF-hand do 99.5 1.8E-13 3.9E-18 70.2 7.1 61 60-120 2-66 (66)
17 PTZ00184 calmodulin; Provision 99.5 2E-12 4.4E-17 76.1 12.1 100 21-121 11-111 (149)
18 cd05022 S-100A13 S-100A13: S-1 99.5 1.4E-13 3E-18 74.3 6.4 65 58-122 8-75 (89)
19 cd05027 S-100B S-100B: S-100B 99.4 2.7E-12 5.9E-17 69.3 7.9 64 58-121 8-78 (88)
20 PLN02964 phosphatidylserine de 99.4 1.9E-11 4.2E-16 86.0 11.6 98 21-122 143-243 (644)
21 KOG0038 Ca2+-binding kinase in 99.3 3.1E-11 6.7E-16 69.5 9.2 100 24-123 74-178 (189)
22 PF13499 EF-hand_7: EF-hand do 99.3 1.9E-11 4.1E-16 62.6 7.1 63 22-84 1-66 (66)
23 cd05029 S-100A6 S-100A6: S-100 99.3 3.4E-11 7.4E-16 65.0 7.7 64 58-121 10-78 (88)
24 cd05025 S-100A1 S-100A1: S-100 99.3 3.1E-11 6.6E-16 65.9 7.4 65 58-122 9-80 (92)
25 cd05031 S-100A10_like S-100A10 99.3 4.3E-11 9.4E-16 65.5 7.7 64 58-121 8-78 (94)
26 PF13833 EF-hand_8: EF-hand do 99.3 2.9E-11 6.2E-16 59.6 6.3 52 71-122 1-53 (54)
27 KOG0028 Ca2+-binding protein ( 99.3 2.2E-10 4.8E-15 66.9 10.7 99 21-120 33-132 (172)
28 cd00051 EFh EF-hand, calcium b 99.3 8.2E-11 1.8E-15 59.0 8.0 62 60-121 2-63 (63)
29 smart00027 EH Eps15 homology d 99.3 6.4E-11 1.4E-15 65.1 8.0 64 56-121 8-71 (96)
30 cd00052 EH Eps15 homology doma 99.3 3.7E-11 8E-16 61.6 6.5 59 61-121 2-60 (67)
31 cd05026 S-100Z S-100Z: S-100Z 99.3 6.1E-11 1.3E-15 64.8 7.3 64 58-121 10-80 (93)
32 cd00213 S-100 S-100: S-100 dom 99.2 7.9E-11 1.7E-15 63.7 7.2 66 57-122 7-79 (88)
33 PLN02964 phosphatidylserine de 99.2 4.4E-10 9.6E-15 79.3 11.3 79 7-86 161-243 (644)
34 cd00252 SPARC_EC SPARC_EC; ext 99.2 3.5E-10 7.6E-15 63.9 7.7 63 56-122 46-108 (116)
35 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.7E-15 56.8 5.7 47 2-48 5-52 (54)
36 PF14658 EF-hand_9: EF-hand do 99.2 2.5E-10 5.4E-15 57.5 6.2 62 62-123 2-65 (66)
37 cd05023 S-100A11 S-100A11: S-1 99.1 7.3E-10 1.6E-14 59.9 7.7 64 58-121 9-79 (89)
38 KOG0377 Protein serine/threoni 99.1 1.9E-09 4.2E-14 72.3 10.9 64 58-121 547-614 (631)
39 KOG0034 Ca2+/calmodulin-depend 99.1 5.8E-09 1.3E-13 63.6 11.0 99 18-121 27-131 (187)
40 KOG4223 Reticulocalbin, calume 99.1 8.5E-10 1.8E-14 71.1 7.6 117 2-118 180-301 (325)
41 KOG4223 Reticulocalbin, calume 99.1 1E-09 2.3E-14 70.7 7.9 122 1-122 93-228 (325)
42 cd05022 S-100A13 S-100A13: S-1 99.1 2E-09 4.2E-14 58.2 7.3 67 21-87 8-76 (89)
43 KOG0037 Ca2+-binding protein, 99.1 3.7E-09 8E-14 64.8 9.2 97 20-122 56-152 (221)
44 KOG0036 Predicted mitochondria 99.0 5.7E-09 1.2E-13 69.4 10.5 98 19-121 12-109 (463)
45 cd05030 calgranulins Calgranul 99.0 2.2E-09 4.7E-14 58.1 6.7 65 58-122 8-79 (88)
46 cd05027 S-100B S-100B: S-100B 98.9 1.3E-08 2.9E-13 54.9 7.7 67 21-87 8-80 (88)
47 cd05026 S-100Z S-100Z: S-100Z 98.9 1.6E-08 3.4E-13 55.2 7.8 66 22-87 11-82 (93)
48 smart00027 EH Eps15 homology d 98.9 2.7E-08 5.9E-13 54.6 8.0 64 21-87 10-73 (96)
49 cd00051 EFh EF-hand, calcium b 98.9 2E-08 4.3E-13 50.1 6.7 61 23-84 2-62 (63)
50 cd00052 EH Eps15 homology doma 98.9 2.2E-08 4.7E-13 51.2 6.7 61 24-87 2-62 (67)
51 KOG0041 Predicted Ca2+-binding 98.9 2.3E-08 4.9E-13 60.7 7.5 66 57-122 98-163 (244)
52 cd00213 S-100 S-100: S-100 dom 98.8 4E-08 8.7E-13 53.1 7.7 67 21-87 8-80 (88)
53 cd05025 S-100A1 S-100A1: S-100 98.8 5.8E-08 1.2E-12 52.9 7.6 67 21-87 9-81 (92)
54 KOG0030 Myosin essential light 98.8 2.5E-07 5.4E-12 53.1 9.8 100 21-121 11-115 (152)
55 cd05029 S-100A6 S-100A6: S-100 98.8 4.3E-08 9.2E-13 53.0 6.2 52 35-86 26-79 (88)
56 cd05031 S-100A10_like S-100A10 98.8 1E-07 2.2E-12 52.1 7.7 68 21-88 8-81 (94)
57 cd00252 SPARC_EC SPARC_EC; ext 98.8 9.7E-08 2.1E-12 54.0 7.5 61 19-84 46-106 (116)
58 cd05023 S-100A11 S-100A11: S-1 98.7 1.8E-07 3.9E-12 50.6 7.7 66 22-87 10-81 (89)
59 PF00036 EF-hand_1: EF hand; 98.7 2.6E-08 5.6E-13 42.5 3.2 23 62-84 4-26 (29)
60 KOG0031 Myosin regulatory ligh 98.7 1.5E-06 3.2E-11 50.9 10.4 97 21-122 32-129 (171)
61 PF00036 EF-hand_1: EF hand; 98.7 6.7E-08 1.5E-12 41.2 3.7 28 22-49 1-28 (29)
62 PF12763 EF-hand_4: Cytoskelet 98.6 4.3E-07 9.4E-12 50.4 7.7 62 56-120 8-69 (104)
63 PF14788 EF-hand_10: EF hand; 98.6 2.3E-07 4.9E-12 44.3 5.5 49 1-49 1-49 (51)
64 KOG2562 Protein phosphatase 2 98.6 5.4E-07 1.2E-11 61.0 9.2 101 18-119 308-421 (493)
65 cd05030 calgranulins Calgranul 98.6 6.4E-07 1.4E-11 48.4 7.6 66 22-87 9-80 (88)
66 KOG1029 Endocytic adaptor prot 98.6 9.2E-07 2E-11 63.4 9.9 116 1-120 31-255 (1118)
67 cd05024 S-100A10 S-100A10: A s 98.6 1.1E-06 2.4E-11 47.4 8.0 63 58-121 8-75 (91)
68 KOG2643 Ca2+ binding protein, 98.5 5.1E-07 1.1E-11 60.8 7.1 51 73-123 403-454 (489)
69 PF13405 EF-hand_6: EF-hand do 98.5 2.2E-07 4.7E-12 40.3 3.2 26 60-85 2-27 (31)
70 PF14788 EF-hand_10: EF hand; 98.5 7.7E-07 1.7E-11 42.5 5.1 47 75-121 2-48 (51)
71 PF14658 EF-hand_9: EF-hand do 98.5 1.2E-06 2.5E-11 44.3 5.8 60 26-85 3-63 (66)
72 PRK12309 transaldolase/EF-hand 98.5 3E-06 6.5E-11 57.4 9.4 56 54-122 330-385 (391)
73 PRK12309 transaldolase/EF-hand 98.4 2.7E-06 5.9E-11 57.6 8.1 59 15-87 328-386 (391)
74 cd05024 S-100A10 S-100A10: A s 98.3 9.5E-06 2.1E-10 43.8 7.8 65 22-87 9-77 (91)
75 KOG0040 Ca2+-binding actin-bun 98.3 2E-05 4.2E-10 60.5 10.7 113 1-121 2269-2397(2399)
76 KOG0751 Mitochondrial aspartat 98.3 2.6E-05 5.6E-10 53.8 10.4 116 2-120 53-205 (694)
77 KOG4666 Predicted phosphate ac 98.2 3.4E-06 7.4E-11 55.1 5.3 101 21-122 259-359 (412)
78 PF09279 EF-hand_like: Phospho 98.2 5.8E-06 1.3E-10 44.1 5.5 64 59-123 1-70 (83)
79 KOG4251 Calcium binding protei 98.2 4.5E-06 9.8E-11 52.6 5.3 121 1-121 117-308 (362)
80 PF13202 EF-hand_5: EF hand; P 98.2 3.3E-06 7.2E-11 34.6 3.2 20 63-82 4-23 (25)
81 KOG2643 Ca2+ binding protein, 98.2 1.1E-05 2.4E-10 54.6 7.4 30 18-47 230-259 (489)
82 PF13202 EF-hand_5: EF hand; P 98.2 2.2E-06 4.8E-11 35.1 2.6 22 24-45 2-23 (25)
83 KOG0377 Protein serine/threoni 98.1 1.5E-05 3.2E-10 54.3 7.1 69 19-87 545-616 (631)
84 KOG0040 Ca2+-binding actin-bun 98.1 4.2E-05 9E-10 58.8 8.9 97 21-118 2253-2357(2399)
85 KOG0041 Predicted Ca2+-binding 98.1 0.00013 2.8E-09 44.8 9.3 94 22-116 100-197 (244)
86 PF10591 SPARC_Ca_bdg: Secrete 98.1 2.7E-06 5.9E-11 48.0 2.0 64 54-119 50-113 (113)
87 PF13405 EF-hand_6: EF-hand do 98.0 1.6E-05 3.6E-10 34.2 3.5 27 22-48 1-27 (31)
88 KOG0751 Mitochondrial aspartat 98.0 0.00014 3.1E-09 50.3 9.4 115 2-118 91-240 (694)
89 KOG4251 Calcium binding protei 98.0 2.2E-05 4.8E-10 49.6 5.1 97 22-118 237-341 (362)
90 KOG0169 Phosphoinositide-speci 97.7 0.0013 2.7E-08 47.8 11.1 117 2-123 153-275 (746)
91 PF12763 EF-hand_4: Cytoskelet 97.7 0.00031 6.8E-09 39.1 6.5 63 21-87 10-72 (104)
92 KOG0046 Ca2+-binding actin-bun 97.6 0.00042 9.1E-09 48.3 6.8 62 58-120 19-83 (627)
93 KOG2562 Protein phosphatase 2 97.4 0.0007 1.5E-08 46.5 6.4 99 17-119 271-376 (493)
94 smart00054 EFh EF-hand, calciu 97.4 0.00023 5E-09 29.1 2.9 22 63-84 5-26 (29)
95 KOG0038 Ca2+-binding kinase in 97.4 0.0011 2.3E-08 38.9 6.1 85 2-86 88-177 (189)
96 PLN02952 phosphoinositide phos 97.4 0.0038 8.2E-08 44.9 9.9 88 34-122 13-110 (599)
97 KOG4065 Uncharacterized conser 97.3 0.0033 7.2E-08 35.3 7.2 63 57-119 66-142 (144)
98 smart00054 EFh EF-hand, calciu 97.3 0.00038 8.3E-09 28.4 2.7 27 96-122 2-28 (29)
99 KOG1955 Ral-GTPase effector RA 97.2 0.0013 2.9E-08 45.7 6.0 65 55-121 228-292 (737)
100 PF10591 SPARC_Ca_bdg: Secrete 97.1 0.00027 5.9E-09 39.9 1.5 61 19-82 52-112 (113)
101 PF09279 EF-hand_like: Phospho 97.0 0.002 4.4E-08 34.2 4.4 66 22-88 1-71 (83)
102 KOG4347 GTPase-activating prot 96.6 0.0056 1.2E-07 43.9 4.9 77 38-115 535-611 (671)
103 KOG0169 Phosphoinositide-speci 96.4 0.084 1.8E-06 38.9 9.8 97 19-120 134-230 (746)
104 KOG4666 Predicted phosphate ac 96.3 0.013 2.9E-07 38.9 5.1 111 6-121 210-323 (412)
105 KOG1265 Phospholipase C [Lipid 96.2 0.048 1E-06 41.0 8.0 81 38-122 205-299 (1189)
106 KOG4578 Uncharacterized conser 96.2 0.0024 5.1E-08 42.3 1.3 64 58-121 333-397 (421)
107 PF09069 EF-hand_3: EF-hand; 96.1 0.09 1.9E-06 28.5 7.3 62 58-122 3-75 (90)
108 KOG0042 Glycerol-3-phosphate d 96.0 0.022 4.7E-07 40.7 5.1 64 58-121 593-656 (680)
109 KOG3555 Ca2+-binding proteogly 95.8 0.027 5.8E-07 37.8 4.7 62 57-122 249-310 (434)
110 PF05517 p25-alpha: p25-alpha 95.5 0.15 3.3E-06 30.5 6.9 47 74-120 18-67 (154)
111 KOG4578 Uncharacterized conser 95.4 0.018 3.9E-07 38.3 2.7 65 22-86 334-398 (421)
112 PF05042 Caleosin: Caleosin re 95.1 0.16 3.5E-06 30.9 6.1 67 17-84 92-164 (174)
113 KOG0998 Synaptic vesicle prote 95.0 0.021 4.5E-07 43.0 2.5 62 58-121 283-344 (847)
114 KOG0046 Ca2+-binding actin-bun 94.9 0.26 5.7E-06 35.1 7.5 69 18-87 13-86 (627)
115 PF12174 RST: RCD1-SRO-TAF4 (R 94.7 0.093 2E-06 27.0 3.9 36 17-52 21-56 (70)
116 KOG4347 GTPase-activating prot 94.7 0.093 2E-06 38.0 4.9 76 3-80 536-612 (671)
117 KOG2243 Ca2+ release channel ( 94.6 0.11 2.4E-06 41.4 5.4 59 63-122 4062-4120(5019)
118 PF05517 p25-alpha: p25-alpha 94.5 0.21 4.6E-06 29.9 5.6 49 2-50 19-70 (154)
119 KOG3866 DNA-binding protein of 94.4 0.15 3.3E-06 33.9 5.1 22 98-119 300-321 (442)
120 PLN02222 phosphoinositide phos 94.3 0.38 8.2E-06 35.0 7.3 62 59-122 26-90 (581)
121 PF05042 Caleosin: Caleosin re 94.3 0.42 9.2E-06 29.1 6.4 100 21-122 7-124 (174)
122 PLN02228 Phosphoinositide phos 94.2 0.43 9.2E-06 34.6 7.4 28 19-48 22-49 (567)
123 KOG3555 Ca2+-binding proteogly 93.6 0.29 6.2E-06 33.1 5.3 66 18-88 247-312 (434)
124 PF14513 DAG_kinase_N: Diacylg 93.4 0.44 9.6E-06 28.0 5.3 68 2-71 8-82 (138)
125 PF08976 DUF1880: Domain of un 93.1 0.11 2.4E-06 29.3 2.4 32 18-49 4-35 (118)
126 KOG1955 Ral-GTPase effector RA 92.8 0.26 5.7E-06 35.0 4.3 59 25-86 235-293 (737)
127 PF08726 EFhand_Ca_insen: Ca2+ 92.3 0.042 9E-07 28.2 0.1 55 58-120 6-67 (69)
128 PLN02230 phosphoinositide phos 92.3 1.5 3.3E-05 32.2 7.7 65 57-122 28-102 (598)
129 PF09068 EF-hand_2: EF hand; 92.0 1.5 3.2E-05 25.5 7.4 68 19-86 39-125 (127)
130 KOG0035 Ca2+-binding actin-bun 92.0 0.73 1.6E-05 35.1 6.0 66 57-122 746-816 (890)
131 KOG0035 Ca2+-binding actin-bun 90.7 2.3 5.1E-05 32.6 7.5 80 2-82 764-848 (890)
132 PLN02952 phosphoinositide phos 90.5 5.7 0.00012 29.4 9.3 84 2-86 17-110 (599)
133 KOG4065 Uncharacterized conser 90.2 0.38 8.3E-06 27.3 2.5 28 19-46 111-142 (144)
134 KOG1264 Phospholipase C [Lipid 89.9 2.9 6.3E-05 32.0 7.3 120 2-122 161-293 (1267)
135 PLN02223 phosphoinositide phos 88.8 3.8 8.2E-05 29.8 7.1 64 58-122 16-92 (537)
136 KOG2871 Uncharacterized conser 88.5 0.62 1.3E-05 31.9 3.0 62 57-118 308-370 (449)
137 KOG1265 Phospholipase C [Lipid 88.5 10 0.00022 29.5 9.6 80 4-86 207-299 (1189)
138 PF14513 DAG_kinase_N: Diacylg 88.4 3.6 7.8E-05 24.3 7.0 69 36-106 6-81 (138)
139 KOG1029 Endocytic adaptor prot 88.3 3.3 7.1E-05 31.5 6.6 57 61-120 19-75 (1118)
140 PF07308 DUF1456: Protein of u 87.8 2.4 5.3E-05 21.7 5.5 46 2-47 14-59 (68)
141 TIGR01639 P_fal_TIGR01639 Plas 87.8 2 4.4E-05 21.4 4.0 29 2-30 10-38 (61)
142 PLN02228 Phosphoinositide phos 87.2 5.8 0.00013 29.1 7.3 67 55-123 21-93 (567)
143 PF03672 UPF0154: Uncharacteri 86.9 2.6 5.7E-05 21.3 4.0 29 2-30 32-60 (64)
144 KOG0039 Ferric reductase, NADH 86.2 2.5 5.5E-05 31.4 5.3 78 35-120 2-87 (646)
145 PRK00523 hypothetical protein; 85.5 3.5 7.6E-05 21.3 4.1 29 2-30 40-68 (72)
146 PF11829 DUF3349: Protein of u 85.2 4.6 0.0001 22.2 5.1 46 3-48 21-66 (96)
147 COG3763 Uncharacterized protei 84.9 3.6 7.9E-05 21.1 4.0 30 2-31 39-68 (71)
148 PF11116 DUF2624: Protein of u 84.0 4.9 0.00011 21.6 8.3 67 1-67 14-82 (85)
149 PF12174 RST: RCD1-SRO-TAF4 (R 82.6 1.3 2.8E-05 22.8 1.9 48 36-87 7-54 (70)
150 KOG2243 Ca2+ release channel ( 82.3 6.8 0.00015 32.4 6.1 60 26-87 4062-4121(5019)
151 PF08414 NADPH_Ox: Respiratory 82.2 6.6 0.00014 21.8 5.8 62 20-87 29-93 (100)
152 PF02761 Cbl_N2: CBL proto-onc 82.1 6 0.00013 21.2 6.7 69 18-88 4-72 (85)
153 TIGR01848 PHA_reg_PhaR polyhyd 81.9 6.3 0.00014 22.1 4.5 70 30-110 12-85 (107)
154 PF09068 EF-hand_2: EF hand; 80.6 8.9 0.00019 22.2 9.2 96 23-120 2-123 (127)
155 PLN02222 phosphoinositide phos 80.4 13 0.00028 27.5 6.8 67 18-86 22-90 (581)
156 PRK01844 hypothetical protein; 79.7 6.7 0.00015 20.3 4.0 29 2-30 39-67 (72)
157 PF07499 RuvA_C: RuvA, C-termi 79.4 5.1 0.00011 18.7 4.6 40 4-47 3-42 (47)
158 KOG0506 Glutaminase (contains 78.4 10 0.00023 27.3 5.6 61 63-123 91-159 (622)
159 KOG4286 Dystrophin-like protei 78.3 28 0.0006 26.8 7.8 97 21-122 470-580 (966)
160 PF07308 DUF1456: Protein of u 78.1 7.5 0.00016 19.9 4.9 44 76-119 15-58 (68)
161 KOG1707 Predicted Ras related/ 76.7 3.6 7.8E-05 30.2 3.1 60 58-120 315-375 (625)
162 TIGR03573 WbuX N-acetyl sugar 74.8 11 0.00025 25.7 5.1 44 71-120 299-342 (343)
163 PF03979 Sigma70_r1_1: Sigma-7 74.3 4.9 0.00011 21.2 2.7 31 72-104 19-49 (82)
164 PLN02230 phosphoinositide phos 73.6 29 0.00063 25.9 7.0 68 18-86 26-102 (598)
165 PF13331 DUF4093: Domain of un 72.1 13 0.00029 20.0 6.4 57 37-100 30-86 (87)
166 PF12949 HeH: HeH/LEM domain; 71.8 5.1 0.00011 17.6 1.9 20 1-20 3-22 (35)
167 PF09336 Vps4_C: Vps4 C termin 71.8 8.6 0.00019 19.2 3.0 24 2-25 30-53 (62)
168 PF02337 Gag_p10: Retroviral G 69.7 13 0.00028 20.2 3.6 42 5-46 12-58 (90)
169 PF11422 IBP39: Initiator bind 68.9 25 0.00054 21.8 8.1 80 22-102 20-104 (181)
170 PF07879 PHB_acc_N: PHB/PHA ac 68.7 14 0.0003 18.7 3.3 21 66-86 11-31 (64)
171 KOG4403 Cell surface glycoprot 67.9 42 0.00091 24.0 6.5 74 18-95 65-139 (575)
172 PF02037 SAP: SAP domain; Int 67.4 7.1 0.00015 16.9 2.0 16 2-17 4-19 (35)
173 PF01885 PTS_2-RNA: RNA 2'-pho 65.9 30 0.00064 21.5 5.8 37 67-103 25-61 (186)
174 KOG0998 Synaptic vesicle prote 64.9 4.5 9.8E-05 31.2 1.7 62 21-85 11-72 (847)
175 PRK00819 RNA 2'-phosphotransfe 64.7 24 0.00052 21.9 4.5 35 68-102 27-61 (179)
176 smart00513 SAP Putative DNA-bi 62.5 12 0.00027 16.0 2.6 16 2-17 4-19 (35)
177 PF08006 DUF1700: Protein of u 62.3 19 0.00041 22.0 3.8 16 38-53 1-16 (181)
178 CHL00185 ycf59 magnesium-proto 62.2 42 0.0009 23.1 5.5 89 10-104 30-120 (351)
179 COG2818 Tag 3-methyladenine DN 61.6 7.8 0.00017 24.1 2.0 59 39-98 37-95 (188)
180 KOG0042 Glycerol-3-phosphate d 61.3 31 0.00068 25.7 5.0 77 16-93 585-664 (680)
181 PTZ00373 60S Acidic ribosomal 61.3 29 0.00062 19.8 4.4 29 2-30 20-48 (112)
182 PF00404 Dockerin_1: Dockerin 61.1 10 0.00022 14.6 2.6 11 70-80 3-13 (21)
183 PF09069 EF-hand_3: EF-hand; 60.6 26 0.00056 19.1 7.6 63 21-86 3-75 (90)
184 KOG1954 Endocytosis/signaling 60.1 30 0.00065 24.5 4.6 57 59-118 445-501 (532)
185 PRK13654 magnesium-protoporphy 60.0 46 0.001 22.9 5.4 90 10-105 34-125 (355)
186 PLN02508 magnesium-protoporphy 59.8 55 0.0012 22.6 6.0 87 14-106 34-122 (357)
187 PF04157 EAP30: EAP30/Vps36 fa 59.5 44 0.00095 21.3 10.4 50 60-109 99-151 (223)
188 TIGR02029 AcsF magnesium-proto 58.9 43 0.00093 22.9 5.1 90 10-105 24-115 (337)
189 KOG4301 Beta-dystrobrevin [Cyt 58.2 26 0.00056 24.2 4.0 60 60-120 112-171 (434)
190 cd01047 ACSF Aerobic Cyclase S 58.1 56 0.0012 22.2 5.5 89 11-105 15-105 (323)
191 PLN00138 large subunit ribosom 57.7 34 0.00073 19.5 4.4 29 2-30 18-46 (113)
192 cd04411 Ribosomal_P1_P2_L12p R 57.3 33 0.00071 19.2 4.1 29 2-30 17-45 (105)
193 PF08461 HTH_12: Ribonuclease 56.9 25 0.00054 17.7 3.4 33 2-34 14-46 (66)
194 PF10982 DUF2789: Protein of u 56.8 28 0.0006 18.2 3.2 33 3-35 4-36 (74)
195 PF15144 DUF4576: Domain of un 55.6 6.1 0.00013 20.7 0.7 43 70-113 36-78 (88)
196 PF05099 TerB: Tellurite resis 55.6 8 0.00017 22.3 1.3 66 34-102 36-102 (140)
197 COG4535 CorC Putative Mg2+ and 55.6 48 0.001 21.8 4.8 88 7-98 135-238 (293)
198 PF04282 DUF438: Family of unk 54.8 30 0.00064 17.9 6.1 37 7-47 2-38 (71)
199 PF10437 Lip_prot_lig_C: Bacte 53.6 33 0.00071 18.1 4.3 32 15-46 53-85 (86)
200 PF00690 Cation_ATPase_N: Cati 52.3 30 0.00065 17.3 3.3 26 63-88 9-34 (69)
201 cd07313 terB_like_2 tellurium 52.3 38 0.00081 18.4 7.5 32 18-49 34-65 (104)
202 PF11020 DUF2610: Domain of un 51.4 37 0.0008 18.0 3.8 40 9-48 36-76 (82)
203 cd00171 Sec7 Sec7 domain; Doma 51.2 57 0.0012 20.2 10.3 38 67-104 142-181 (185)
204 cd08313 Death_TNFR1 Death doma 50.9 37 0.00081 18.0 3.4 26 2-29 9-34 (80)
205 cd05833 Ribosomal_P2 Ribosomal 50.6 45 0.00098 18.8 4.4 29 2-30 18-46 (109)
206 PF06207 DUF1002: Protein of u 50.4 52 0.0011 21.3 4.4 37 11-47 185-221 (225)
207 PRK06402 rpl12p 50S ribosomal 50.4 45 0.00098 18.8 4.1 29 2-30 17-45 (106)
208 KOG3449 60S acidic ribosomal p 49.4 48 0.001 18.8 5.2 42 63-104 6-47 (112)
209 PF12238 MSA-2c: Merozoite sur 49.1 68 0.0015 20.5 5.5 32 21-52 84-116 (205)
210 KOG2301 Voltage-gated Ca2+ cha 47.3 21 0.00045 29.9 2.7 34 56-89 1415-1448(1592)
211 KOG4070 Putative signal transd 47.2 53 0.0012 19.9 3.8 52 18-69 54-109 (180)
212 PHA02105 hypothetical protein 46.3 38 0.00082 16.7 3.0 47 1-47 4-55 (68)
213 KOG0506 Glutaminase (contains 45.8 1.2E+02 0.0026 22.3 5.8 46 2-47 103-156 (622)
214 KOG2623 Tyrosyl-tRNA synthetas 44.8 1.1E+02 0.0025 21.8 8.4 83 3-86 302-387 (467)
215 PF11116 DUF2624: Protein of u 44.8 51 0.0011 17.8 6.0 50 37-87 14-63 (85)
216 KOG1954 Endocytosis/signaling 43.2 36 0.00079 24.1 3.0 23 60-82 479-501 (532)
217 cd03035 ArsC_Yffb Arsenate Red 43.0 31 0.00067 19.1 2.3 14 74-87 71-84 (105)
218 TIGR00135 gatC glutamyl-tRNA(G 42.9 55 0.0012 17.6 4.0 29 2-30 1-29 (93)
219 KOG3077 Uncharacterized conser 42.3 1E+02 0.0022 20.5 10.2 48 3-50 83-130 (260)
220 cd07357 HN_L-whirlin_R2_like S 41.9 56 0.0012 17.4 4.3 37 18-54 16-52 (81)
221 PRK09389 (R)-citramalate synth 41.7 1.2E+02 0.0025 22.2 5.5 45 6-50 322-368 (488)
222 PF07492 Trehalase_Ca-bi: Neut 40.9 8.1 0.00018 16.3 -0.1 17 98-114 3-19 (30)
223 KOG4286 Dystrophin-like protei 40.8 46 0.001 25.7 3.4 92 18-109 417-521 (966)
224 KOG4301 Beta-dystrobrevin [Cyt 40.2 1.3E+02 0.0028 21.1 6.4 92 24-122 113-215 (434)
225 COG2058 RPP1A Ribosomal protei 39.6 73 0.0016 18.1 4.1 40 2-46 17-56 (109)
226 PF01316 Arg_repressor: Argini 39.0 58 0.0013 16.8 3.9 28 3-30 21-48 (70)
227 cd08815 Death_TNFRSF25_DR3 Dea 38.6 63 0.0014 17.1 2.9 18 2-19 9-26 (77)
228 PF07862 Nif11: Nitrogen fixat 38.3 46 0.001 15.4 6.0 21 76-96 28-48 (49)
229 PF13623 SurA_N_2: SurA N-term 38.1 89 0.0019 18.6 7.8 37 84-120 99-145 (145)
230 KOG1707 Predicted Ras related/ 37.9 1.5E+02 0.0034 22.3 5.5 46 58-103 195-241 (625)
231 TIGR00624 tag DNA-3-methyladen 37.7 27 0.00058 21.7 1.7 46 56-101 51-96 (179)
232 cd05831 Ribosomal_P1 Ribosomal 37.5 77 0.0017 17.7 4.3 29 2-30 18-46 (103)
233 PF04876 Tenui_NCP: Tenuivirus 37.3 96 0.0021 18.8 7.5 72 23-103 85-161 (175)
234 PRK00034 gatC aspartyl/glutamy 36.9 71 0.0015 17.2 4.1 29 2-30 3-31 (95)
235 PF10281 Ish1: Putative stress 36.9 43 0.00094 14.6 3.4 30 92-121 5-35 (38)
236 PF09687 PRESAN: Plasmodium RE 36.7 79 0.0017 17.6 3.8 29 2-30 6-34 (129)
237 PF03732 Retrotrans_gag: Retro 36.3 66 0.0014 16.7 4.2 47 37-86 26-72 (96)
238 PRK00199 ihfB integration host 36.3 73 0.0016 17.1 4.1 28 2-29 1-28 (94)
239 smart00222 Sec7 Sec7 domain. D 35.5 1.1E+02 0.0024 19.0 10.2 38 67-104 144-183 (187)
240 PF08349 DUF1722: Protein of u 35.4 87 0.0019 17.7 5.9 15 71-85 82-96 (117)
241 PF09373 PMBR: Pseudomurein-bi 35.4 43 0.00094 14.2 2.2 15 35-49 2-16 (33)
242 cd04790 HTH_Cfa-like_unk Helix 34.7 1.1E+02 0.0024 18.7 5.8 35 71-105 112-147 (172)
243 KOG1785 Tyrosine kinase negati 34.5 1.7E+02 0.0038 20.9 6.8 69 17-87 171-239 (563)
244 PLN03228 methylthioalkylmalate 34.4 1.4E+02 0.003 22.0 4.9 42 7-48 432-475 (503)
245 PF12631 GTPase_Cys_C: Catalyt 34.3 70 0.0015 16.3 2.9 45 59-103 24-72 (73)
246 cd08316 Death_FAS_TNFRSF6 Deat 34.3 86 0.0019 17.3 8.1 77 2-102 18-94 (97)
247 TIGR00988 hip integration host 34.2 79 0.0017 16.9 4.1 28 2-29 1-28 (94)
248 KOG2871 Uncharacterized conser 34.0 73 0.0016 22.5 3.3 63 19-81 307-369 (449)
249 KOG4004 Matricellular protein 33.8 30 0.00065 22.0 1.4 25 60-84 224-248 (259)
250 PF14771 DUF4476: Domain of un 33.0 85 0.0018 16.9 9.5 47 2-50 5-52 (95)
251 PF03960 ArsC: ArsC family; I 32.4 40 0.00086 18.7 1.7 13 74-86 70-82 (110)
252 PF05597 Phasin: Poly(hydroxya 32.4 1.1E+02 0.0023 18.0 3.5 23 7-30 96-118 (132)
253 PRK08181 transposase; Validate 32.2 1.5E+02 0.0033 19.6 6.1 46 2-50 7-52 (269)
254 PF09107 SelB-wing_3: Elongati 32.2 65 0.0014 15.3 3.1 29 72-105 8-36 (50)
255 PF09435 DUF2015: Fungal prote 32.0 1.1E+02 0.0024 17.9 3.5 6 38-43 99-104 (128)
256 COG5562 Phage envelope protein 32.0 30 0.00066 20.4 1.2 47 72-122 54-100 (137)
257 PF06648 DUF1160: Protein of u 31.8 1.1E+02 0.0024 17.8 6.1 43 56-101 35-78 (122)
258 PRK10026 arsenate reductase; P 31.8 98 0.0021 18.4 3.3 12 75-86 76-87 (141)
259 PLN02508 magnesium-protoporphy 31.7 1.1E+02 0.0024 21.2 3.8 55 67-121 52-106 (357)
260 PRK14981 DNA-directed RNA poly 31.3 1E+02 0.0023 17.4 4.0 27 76-102 80-106 (112)
261 KOG1785 Tyrosine kinase negati 31.3 2E+02 0.0043 20.7 6.9 82 2-87 191-275 (563)
262 TIGR02553 SipD_IpaD_SspD type 31.2 1.8E+02 0.0038 20.0 6.3 60 59-121 228-292 (308)
263 KOG4403 Cell surface glycoprot 31.0 1.5E+02 0.0032 21.5 4.4 54 33-86 40-96 (575)
264 PF12486 DUF3702: ImpA domain 30.6 1.3E+02 0.0028 18.2 7.2 30 58-87 69-98 (148)
265 PRK10353 3-methyl-adenine DNA 30.3 77 0.0017 19.9 2.8 45 56-100 52-96 (187)
266 cd00076 H4 Histone H4, one of 30.1 97 0.0021 16.7 7.8 69 17-90 13-81 (85)
267 PF11363 DUF3164: Protein of u 30.0 1.5E+02 0.0032 18.8 6.7 22 64-85 125-146 (195)
268 PF09494 Slx4: Slx4 endonuclea 29.9 81 0.0018 15.7 3.7 11 37-47 44-54 (64)
269 PF08044 DUF1707: Domain of un 29.3 77 0.0017 15.2 3.3 30 71-100 20-49 (53)
270 PF05383 La: La domain; Inter 29.2 62 0.0014 16.0 1.9 20 63-82 20-39 (61)
271 TIGR03798 ocin_TIGR03798 bacte 29.1 83 0.0018 15.6 3.9 23 3-25 26-48 (64)
272 PF01023 S_100: S-100/ICaBP ty 29.1 69 0.0015 14.7 3.9 27 60-86 8-36 (44)
273 PF06384 ICAT: Beta-catenin-in 28.8 1E+02 0.0022 16.4 2.7 20 79-98 21-40 (78)
274 PF11848 DUF3368: Domain of un 28.7 73 0.0016 14.8 3.8 32 72-103 15-47 (48)
275 COG5069 SAC6 Ca2+-binding acti 28.7 2.5E+02 0.0053 20.9 5.6 49 2-51 502-550 (612)
276 TIGR01529 argR_whole arginine 28.6 1.4E+02 0.0029 17.8 3.9 29 3-31 18-46 (146)
277 KOG3442 Uncharacterized conser 28.4 1.3E+02 0.0028 17.6 5.7 47 63-110 40-94 (132)
278 TIGR03685 L21P_arch 50S riboso 27.1 1.2E+02 0.0027 17.0 4.4 29 2-30 17-45 (105)
279 PF09415 CENP-X: CENP-S associ 26.9 83 0.0018 16.3 2.2 23 63-85 44-66 (72)
280 COG4103 Uncharacterized protei 26.8 1.5E+02 0.0033 17.8 7.8 68 17-86 62-129 (148)
281 PF07128 DUF1380: Protein of u 26.8 1.5E+02 0.0032 17.7 4.0 31 3-33 28-58 (139)
282 cd05832 Ribosomal_L12p Ribosom 26.7 1.3E+02 0.0028 17.0 4.4 29 2-30 17-45 (106)
283 PF06014 DUF910: Bacterial pro 26.5 99 0.0022 15.6 4.3 48 3-50 3-55 (62)
284 PF01369 Sec7: Sec7 domain; I 26.3 1.7E+02 0.0036 18.2 8.7 11 110-120 154-164 (190)
285 PF06784 UPF0240: Uncharacteri 25.8 1.4E+02 0.0029 18.6 3.3 18 71-88 114-131 (179)
286 cd03033 ArsC_15kD Arsenate Red 25.8 1.3E+02 0.0027 17.0 3.0 25 62-87 60-84 (113)
287 PF03556 Cullin_binding: Culli 25.8 1.4E+02 0.003 17.0 4.9 95 19-120 18-116 (117)
288 smart00874 B5 tRNA synthetase 25.7 71 0.0015 15.9 1.9 20 12-31 13-32 (71)
289 TIGR01616 nitro_assoc nitrogen 25.6 1.2E+02 0.0025 17.6 2.9 41 63-104 62-117 (126)
290 COG1438 ArgR Arginine represso 25.6 1.3E+02 0.0028 18.2 3.1 28 3-30 22-49 (150)
291 PF02761 Cbl_N2: CBL proto-onc 25.3 1.2E+02 0.0027 16.3 7.0 49 2-50 23-71 (85)
292 COG1859 KptA RNA:NAD 2'-phosph 24.8 2E+02 0.0043 18.5 4.0 36 68-103 53-88 (211)
293 PF09412 XendoU: Endoribonucle 24.5 1.6E+02 0.0035 19.6 3.6 28 60-87 104-131 (265)
294 PF12419 DUF3670: SNF2 Helicas 24.4 1.6E+02 0.0035 17.3 5.0 44 2-45 84-137 (141)
295 KOG4629 Predicted mechanosensi 24.2 2.8E+02 0.006 21.6 5.1 55 59-120 405-459 (714)
296 PF02885 Glycos_trans_3N: Glyc 23.8 1.1E+02 0.0024 15.2 6.2 16 15-30 12-27 (66)
297 KOG2419 Phosphatidylserine dec 23.5 48 0.001 25.2 1.2 62 60-121 439-532 (975)
298 PTZ00015 histone H4; Provision 23.4 1.5E+02 0.0033 16.6 8.1 69 17-90 30-98 (102)
299 KOG0869 CCAAT-binding factor, 23.0 1.9E+02 0.0042 17.7 4.4 38 66-103 78-115 (168)
300 PF12207 DUF3600: Domain of un 22.9 1.9E+02 0.0041 17.5 5.5 52 32-85 63-116 (162)
301 TIGR01321 TrpR trp operon repr 22.8 1.5E+02 0.0032 16.4 3.9 12 73-84 54-65 (94)
302 TIGR02736 cbb3_Q_epsi cytochro 22.8 1E+02 0.0022 15.2 1.9 22 26-47 19-40 (56)
303 COG4359 Uncharacterized conser 22.8 2.2E+02 0.0047 18.2 5.5 52 33-91 9-61 (220)
304 PHA02771 hypothetical protein; 22.5 1.5E+02 0.0032 16.2 3.6 13 74-86 31-43 (90)
305 cd03032 ArsC_Spx Arsenate Redu 22.5 1.6E+02 0.0034 16.5 3.4 24 62-86 62-85 (115)
306 smart00540 LEM in nuclear memb 22.4 1E+02 0.0022 14.3 2.4 16 2-17 6-21 (44)
307 PHA02335 hypothetical protein 21.5 1.7E+02 0.0037 16.6 3.7 30 36-72 23-52 (118)
308 COG3820 Uncharacterized protei 21.5 1.1E+02 0.0023 19.2 2.2 53 36-88 19-73 (230)
309 cd01671 CARD Caspase activatio 21.3 1.3E+02 0.0029 15.2 3.6 46 35-86 25-70 (80)
310 PF14493 HTH_40: Helix-turn-he 21.2 1.5E+02 0.0032 15.8 3.7 22 58-83 68-89 (91)
311 PLN03076 ARF guanine nucleotid 21.1 5.9E+02 0.013 22.6 10.5 38 68-105 756-795 (1780)
312 PF08485 Polysacc_syn_2C: Poly 21.1 1.2E+02 0.0025 14.5 2.2 23 65-87 22-44 (48)
313 PF10163 EnY2: Transcription f 21.0 1.5E+02 0.0033 15.8 3.6 62 40-101 16-79 (86)
314 TIGR00014 arsC arsenate reduct 21.0 1.7E+02 0.0037 16.4 3.7 13 74-86 73-85 (114)
315 PHA00003 B internal scaffoldin 21.0 94 0.002 17.6 1.8 34 12-46 76-109 (120)
316 PF10897 DUF2713: Protein of u 20.7 2.5E+02 0.0053 18.0 4.5 18 94-111 209-226 (246)
317 PF06854 Phage_Gp15: Bacteriop 20.6 2.3E+02 0.005 17.7 3.9 19 72-90 130-148 (183)
318 PF03874 RNA_pol_Rpb4: RNA pol 20.6 1.6E+02 0.0034 16.5 2.8 41 58-103 57-97 (117)
319 TIGR01837 PHA_granule_1 poly(h 20.6 1.8E+02 0.004 16.6 3.5 9 37-45 92-100 (118)
320 PF02845 CUE: CUE domain; Int 20.5 1E+02 0.0022 13.6 4.0 27 80-106 4-30 (42)
321 COG0721 GatC Asp-tRNAAsn/Glu-t 20.3 1.7E+02 0.0037 16.1 3.7 29 2-30 3-31 (96)
322 PF05788 Orbi_VP1: Orbivirus R 20.3 2E+02 0.0043 23.6 3.8 40 68-107 1131-1170(1301)
323 PF00427 PBS_linker_poly: Phyc 20.2 1.6E+02 0.0035 17.3 2.7 17 34-50 41-57 (131)
324 PLN02223 phosphoinositide phos 20.0 3.9E+02 0.0084 20.1 6.7 68 18-86 13-92 (537)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=126.30 Aligned_cols=121 Identities=48% Similarity=0.853 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
.|++.+|..+++.+|..++.+++..++..++. +.+.|++.+|+.++..........+++..+|+.||.+++|+|+..++
T Consensus 36 ~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL 114 (160)
T COG5126 36 LIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGEL 114 (160)
T ss_pred CCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHH
Confidence 48899999999999999999999999999999 88999999999999888777777899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+.++...|..+++++++.+++.++++++|.|+|++|...+..
T Consensus 115 ~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 115 RRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999999999999999999999999997754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.92 E-value=3.1e-23 Score=122.91 Aligned_cols=123 Identities=56% Similarity=0.955 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchH----HHHHHHHHhhhcCCCCCccC
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEA----QEELKEAFKVFDKDQDGYIS 76 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~ 76 (124)
+|+..+|..+++.+|..+++.++..++..+|.+++|.|++.+|..++......... ...++.+|+.+|++++|+|+
T Consensus 24 ~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is 103 (151)
T KOG0027|consen 24 KISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFIS 103 (151)
T ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCc
Confidence 47899999999999999999999999999999999999999999999776554443 34899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcCC
Q 040628 77 PNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLLP 123 (124)
Q Consensus 77 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 123 (124)
..+++.++..+|...+.++++.+++..+.+++|.|+|++|+..+...
T Consensus 104 ~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 104 ASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998764
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.88 E-value=6.9e-21 Score=112.38 Aligned_cols=122 Identities=66% Similarity=1.073 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
.|+..||..++..+|..++...+..++..++.+++|.|+|++|+.++............+..+|..+|.+++|.|+..++
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHH
Confidence 47899999999999988889999999999999999999999999998765544455577899999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..++...+..++.+++..++..++.+++|.|++++|..++..
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 107 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 999999998899999999999999999999999999998875
No 4
>PTZ00183 centrin; Provisional
Probab=99.88 E-value=9.9e-21 Score=112.83 Aligned_cols=122 Identities=46% Similarity=0.801 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
+|+..||..+++.+|...+...+..++..+|.+++|.|++++|..++..........+.+..+|..+|++++|.|+..+|
T Consensus 33 ~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~ 112 (158)
T PTZ00183 33 TIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNL 112 (158)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 47899999999999988889999999999999999999999999988665444445577899999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..++...|..++..++..++..++.+++|.|++++|..++.+
T Consensus 113 ~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 113 KRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6e-20 Score=106.18 Aligned_cols=122 Identities=44% Similarity=0.769 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
+|...||..+++++|..+...++..++..+|+++.|.|++++|...+..........+++..+|+.+|-+++|.|+..+|
T Consensus 49 ~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~l 128 (172)
T KOG0028|consen 49 KIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNL 128 (172)
T ss_pred cccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHH
Confidence 47889999999999999999999999999999999999999999999888777778899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+.+...+|..++++++..+++.++.+++|.|+-++|...+.+
T Consensus 129 krvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 129 KRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999999999999999998865
No 6
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=7.9e-18 Score=102.10 Aligned_cols=114 Identities=29% Similarity=0.481 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHH
Q 040628 1 CITIEELAVAIKSLD-QNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNE 79 (124)
Q Consensus 1 ~l~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (124)
+|+.+||.++|.+.+ -.++.+.++.++..+|.+.+|+|.++||..++... ..++.+|+.+|.|++|.|+..|
T Consensus 73 ~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sE 145 (221)
T KOG0037|consen 73 RILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSE 145 (221)
T ss_pred cccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHH
Confidence 477899999998654 46899999999999999999999999999999877 7899999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 80 LRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
++.+|..+|..++++-++.++++++...+|.|.+++|++++.
T Consensus 146 L~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 146 LRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 999999999999999999999999988899999999999874
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.78 E-value=5.5e-17 Score=93.43 Aligned_cols=117 Identities=33% Similarity=0.625 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
.|.+.+|+.++.++|..+++++++.++... .|.|+|.-|+.++...+....+++.+..+|..+|++++|.|..+.+
T Consensus 48 ~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~l 123 (171)
T KOG0031|consen 48 FIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYL 123 (171)
T ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHH
Confidence 478899999999999999999999999764 7889999999999988888899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+.+|...|..+++++++.+++.+..+..|.++|..|+..+.
T Consensus 124 re~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 124 RELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999886
No 8
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=5.6e-17 Score=98.35 Aligned_cols=121 Identities=27% Similarity=0.462 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHcCCCC-CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHH
Q 040628 1 CITIEELAVAIKSLDQNP-TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNE 79 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (124)
.|+..+|+.++....... +......+|+.+|.+++|.|++.||+.++.. .......+.+..+|+.||.+++|.|+.+|
T Consensus 43 ~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~-~~rGt~eekl~w~F~lyD~dgdG~It~~E 121 (193)
T KOG0044|consen 43 RLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSL-TSRGTLEEKLKWAFRLYDLDGDGYITKEE 121 (193)
T ss_pred ccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHH-HcCCcHHHHhhhhheeecCCCCceEcHHH
Confidence 367789999999987643 4467888999999999999999999999964 44456668889999999999999999999
Q ss_pred HHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 80 LRHVMMNI----GE-------KVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 80 ~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+..++..+ +. ....+-++.+|+.+|.|++|.|++++|......
T Consensus 122 ml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 122 MLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99998875 21 223456888999999999999999999987654
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.73 E-value=2.2e-16 Score=89.51 Aligned_cols=121 Identities=32% Similarity=0.593 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccC--CCCcccHHHHHHHHHHhcccc--hHHHHHHHHHhhhcCCCCCccC
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVN--GNGTIEFGEFLNLMARKMKEN--EAQEELKEAFKVFDKDQDGYIS 76 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~ 76 (124)
+|+..+...+|+++|..++++++......+.++ +-.+++|++|.-++....... ..-+.+-+..+.+|++++|+|.
T Consensus 27 ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~ 106 (152)
T KOG0030|consen 27 KISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIM 106 (152)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCccee
Confidence 478889999999999999999999999998777 446899999999987665443 2335677889999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 77 PNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 77 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..+++.+|..+|..+++++++.++.-.. +.+|.|.|+.|+..+.+
T Consensus 107 ~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 107 GAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 9999999999999999999999998875 88899999999988754
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.73 E-value=2.8e-16 Score=95.23 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGT-IEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
|++.||..+... . ..--..+++..++.+.+|. |++++|+..+....+.....++++.+|+.||.+++|+|+.+++
T Consensus 51 lt~eef~~i~~~-~---~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 51 LTKEEFLSIPEL-A---LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred cCHHHHHHHHHH-h---cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 566777666622 1 1224567778888888777 9999999999877777777779999999999999999999999
Q ss_pred HHHHHHhC-CCCC--HH----HHHHHHHhhCCCCCCceeHHHHHHHhcCC
Q 040628 81 RHVMMNIG-EKVT--DE----ELEQMVREADLDGDGQINYEEFARMMLLP 123 (124)
Q Consensus 81 ~~~l~~~~-~~~~--~~----~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 123 (124)
.+++..+. ...+ .+ .++.++..+|.+++|+|+++||+..+.+.
T Consensus 127 ~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 127 KQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 99999874 3344 33 35667888999999999999999998764
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.67 E-value=5.6e-15 Score=97.12 Aligned_cols=115 Identities=29% Similarity=0.580 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHcCCC-CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 2 ITIEELAVAIKSLDQN-PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 2 l~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
++..++.+.+.+++.. ++......++..+|.+.+|.++|+||.+.+... +.++..+|..+|.+.+|.|..+|+
T Consensus 31 ~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~~Ei 104 (463)
T KOG0036|consen 31 VDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDPNEI 104 (463)
T ss_pred eeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCHHHH
Confidence 5678899999998776 788899999999999999999999999998643 467889999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 81 RHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
...++..|.+++.++...+++..|+++++.|+++|+.+++..
T Consensus 105 ~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 105 WRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 999999999999999999999999999999999999998764
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.66 E-value=9.3e-15 Score=88.74 Aligned_cols=116 Identities=24% Similarity=0.364 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhccCC-CCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHH
Q 040628 4 IEELAVAIKSLDQNPTEEELRNMISEVDVNG-NGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 4 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 82 (124)
...+.++.+. ..+++.+++.+++.|-.+. .|.|+-++|..++....+..........+|+.+|.+++|.|++.||..
T Consensus 11 ~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 11 PESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred cHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 3445555544 3489999999999998775 899999999999999998888888999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 83 VMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
.++....+..++.++.+|+.+|.+++|.|+++|+..++.
T Consensus 89 als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 89 ALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 999998888899999999999999999999999998875
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.58 E-value=5.7e-14 Score=83.30 Aligned_cols=102 Identities=30% Similarity=0.445 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCC-----CHH
Q 040628 20 EEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKV-----TDE 94 (124)
Q Consensus 20 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~ 94 (124)
..++..+|..+|.+++|.|+..++..++......++. ..+..++..+|.+++|.|++.+|..++....... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~-~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTE-EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 3678999999999999999999999999766555444 7889999999999999999999999998775422 356
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 95 ELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 95 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
++..+|+.+|.+++|.|+..++...|..
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 9999999999999999999999998864
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.55 E-value=3.3e-13 Score=79.57 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=87.2
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG-EKVTDEELEQM 99 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~ 99 (124)
.++.+.|..+|++++|.|++.++..+++ ..+.......+.+++..+|. ++|.|++.+|..++.... ..-+.+++..+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4566778888999999999999999997 55666666889999999999 999999999999998775 45668999999
Q ss_pred HHhhCCCCCCceeHHHHHHHhc
Q 040628 100 VREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
|+.+|.+++|.|+..++..++.
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHH
Confidence 9999999999999999998875
No 15
>PTZ00183 centrin; Provisional
Probab=99.54 E-value=4.8e-13 Score=79.65 Aligned_cols=100 Identities=29% Similarity=0.382 Sum_probs=85.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI-GEKVTDEELEQM 99 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 99 (124)
.++..+|..+|.+++|.|+.++|..++..... ......+..+|..+|.+++|.|++.+|...+... ......+.++.+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 56888899999999999999999999865432 2334678899999999999999999999987664 344567789999
Q ss_pred HHhhCCCCCCceeHHHHHHHhc
Q 040628 100 VREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
|+.+|.+++|.|+..+|..++.
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHH
Confidence 9999999999999999998875
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.50 E-value=1.8e-13 Score=70.22 Aligned_cols=61 Identities=56% Similarity=0.980 Sum_probs=50.4
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEE----LEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
++.+|+.+|.+++|.|+.+|+..++...+...+... +..+++.+|.+++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678899999999999999999999998886555544 4555888999999999999998764
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.49 E-value=2e-12 Score=76.11 Aligned_cols=100 Identities=26% Similarity=0.381 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG-EKVTDEELEQM 99 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~ 99 (124)
..+...|..+|.+++|.|++++|..++........ .+.+..+|..+|.+++|.|++++|..++.... .......+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 46778889999999999999999999865433333 46789999999999999999999999887653 33455678899
Q ss_pred HHhhCCCCCCceeHHHHHHHhc
Q 040628 100 VREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
|+.+|.+++|.|+.++|..++.
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHH
Confidence 9999999999999999988763
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=1.4e-13 Score=74.29 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 58 EELKEAFKVFDK-DQDGYISPNELRHVMMN-IGEKVTD-EELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 58 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..+..+|+.||+ +++|+|+..+++.++.. +|..++. ++++.+++..|.|++|.|+|+||...+.+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 568899999999 99999999999999998 7877787 89999999999999999999999988753
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=2.7e-12 Score=69.27 Aligned_cols=64 Identities=23% Similarity=0.516 Sum_probs=58.9
Q ss_pred HHHHHHHhhhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFD-KDQDG-YISPNELRHVMMN-----IGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|+.+| ++++| .|+.++++.+++. .|...++++++.+++.+|.+++|.|+|++|...+.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56889999998 79999 5999999999999 78888999999999999999999999999998764
No 20
>PLN02964 phosphatidylserine decarboxylase
Probab=99.36 E-value=1.9e-11 Score=86.02 Aligned_cols=98 Identities=21% Similarity=0.388 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhc-ccchHHH--HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKM-KENEAQE--ELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELE 97 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 97 (124)
.++.+.|..+|++++|.+ +..++.... ..+...+ .+..+|..+|.+++|.|+++||..++..++...+++++.
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 567778889999999986 444444333 1333332 488999999999999999999999999888778899999
Q ss_pred HHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 98 QMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 98 ~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
.+|+.+|.+++|.|+++||...+..
T Consensus 219 eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 219 ELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999998765
No 21
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.33 E-value=3.1e-11 Score=69.49 Aligned_cols=100 Identities=30% Similarity=0.633 Sum_probs=81.7
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHH----H
Q 040628 24 RNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG-EKVTDEELE----Q 98 (124)
Q Consensus 24 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~----~ 98 (124)
+++...+..++.|.+++++|+.+++.........-.+..+|+.||-++++.|-..++...+..+- ..++++++. .
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45667788899999999999999865544333444577799999999999999999999998875 478887754 4
Q ss_pred HHHhhCCCCCCceeHHHHHHHhcCC
Q 040628 99 MVREADLDGDGQINYEEFARMMLLP 123 (124)
Q Consensus 99 ~~~~~d~~~~~~i~~~ef~~~l~~~ 123 (124)
+++..|.+++|++++.+|...+.++
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6667899999999999999888764
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=1.9e-11 Score=62.63 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=53.3
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhccc---chHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKE---NEAQEELKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
.++.+|+.+|.+++|.|+.+||..++...... ....+.+..+|+.+|++++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999766542 3344567888999999999999999998764
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.29 E-value=3.4e-11 Score=65.00 Aligned_cols=64 Identities=22% Similarity=0.496 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDK-DQ-DGYISPNELRHVMMN---IGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|..||. ++ +|.|+.+||+.++.. .|...+.++++.+++..|.+++|+|+|++|...+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 456789999998 56 889999999999973 58889999999999999999999999999998875
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.29 E-value=3.1e-11 Score=65.88 Aligned_cols=65 Identities=23% Similarity=0.555 Sum_probs=55.3
Q ss_pred HHHHHHHhhhc-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 58 EELKEAFKVFD-KDQDG-YISPNELRHVMMN-IG----EKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 58 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+.++.+|..+| .+++| .|+..+++.+++. .| ...+.++++.+++.+|.+++|.|+|++|+.++.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56888999996 99999 4999999999975 43 2457888999999999999999999999987753
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.28 E-value=4.3e-11 Score=65.54 Aligned_cols=64 Identities=23% Similarity=0.504 Sum_probs=56.7
Q ss_pred HHHHHHHhhhcC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDK-DQ-DGYISPNELRHVMMN-----IGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|..+|. ++ +|.|+.+++..++.. .+...+.++++.+++.+|.+++|.|+|++|+..+.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 568889999997 87 699999999999986 45677889999999999999999999999998775
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=2.9e-11 Score=59.55 Aligned_cols=52 Identities=40% Similarity=0.762 Sum_probs=47.6
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 71 QDGYISPNELRHVMMNIGEK-VTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
++|.|+.++|..++..+|.. +++++++.++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47899999999999888888 99999999999999999999999999998753
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=2.2e-10 Score=66.88 Aligned_cols=99 Identities=26% Similarity=0.381 Sum_probs=83.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHH-HhCCCCCHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMM-NIGEKVTDEELEQM 99 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~ 99 (124)
.+++..|..++.+.+|.|+++|+..++..... ....+++..+..-+|++++|.|++++|+..+. .++..-+.+++..+
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 57899999999999999999999777654333 33346788899999999999999999999865 45665699999999
Q ss_pred HHhhCCCCCCceeHHHHHHHh
Q 040628 100 VREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l 120 (124)
|+.+|.+++|+|+..+|+...
T Consensus 112 frl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HHcccccCCCCcCHHHHHHHH
Confidence 999999999999999988654
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.27 E-value=8.2e-11 Score=58.98 Aligned_cols=62 Identities=50% Similarity=0.957 Sum_probs=56.3
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+..+|..+|.+++|.|+.+++..++...+.+.+.+.+..+++.++.+++|.|++++|..++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 45789999999999999999999999999889999999999999999999999999988763
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.27 E-value=6.4e-11 Score=65.11 Aligned_cols=64 Identities=27% Similarity=0.550 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
....+..+|..+|++++|.|+..++..+++..+ ++.++++.++..++.+++|.|++++|+.++.
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 446688889999999999999999999988854 6788888999999999999999999987664
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.26 E-value=3.7e-11 Score=61.63 Aligned_cols=59 Identities=37% Similarity=0.528 Sum_probs=49.8
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 61 KEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 61 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+.+|..+|++++|.|+.+++..++...| .+.++++.+++.++.+++|.|++++|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4578888999999999999998888875 4788888899999989999999999987764
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=6.1e-11 Score=64.77 Aligned_cols=64 Identities=17% Similarity=0.412 Sum_probs=51.6
Q ss_pred HHHHHHHhhhc-CCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFD-KDQDG-YISPNELRHVMMNI-----GEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|+.|| ++++| .|+..|++.++... ....+..+++.+++.+|.+++|.|+|+||+..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45677899998 77888 49999999998763 2234677899999999999999999999988764
No 32
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=7.9e-11 Score=63.73 Aligned_cols=66 Identities=17% Similarity=0.441 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 57 QEELKEAFKVFDK--DQDGYISPNELRHVMMN-IGEK----VTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 57 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
...++.+|..+|+ +++|.|+.+++..+++. .+.. .+.++++.++..++.+++|.|+|++|+..+..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4568889999999 89999999999999975 4433 35888999999999999999999999987753
No 33
>PLN02964 phosphatidylserine decarboxylase
Probab=99.20 E-value=4.4e-10 Score=79.34 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=68.9
Q ss_pred HHHHHHHcC-CCCCHHH---HHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHH
Q 040628 7 LAVAIKSLD-QNPTEEE---LRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 7 l~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 82 (124)
+..+++++| ..+++.+ ++.++..+|.+++|.|+++||..++... ......+++..+|+.+|++++|.|+.+|+..
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 577888888 5788776 8999999999999999999999999754 3344557899999999999999999999999
Q ss_pred HHHH
Q 040628 83 VMMN 86 (124)
Q Consensus 83 ~l~~ 86 (124)
++..
T Consensus 240 vL~~ 243 (644)
T PLN02964 240 LLAL 243 (644)
T ss_pred HHHh
Confidence 9988
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.16 E-value=3.5e-10 Score=63.91 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
....+..+|..+|.|++|.|+.+|+..+. .......+..+++.+|.|++|.||++||..++.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 34678999999999999999999999876 2234567888999999999999999999999854
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.16 E-value=1.7e-10 Score=56.75 Aligned_cols=47 Identities=38% Similarity=0.646 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHcCCC-CCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 040628 2 ITIEELAVAIKSLDQN-PTEEELRNMISEVDVNGNGTIEFGEFLNLMA 48 (124)
Q Consensus 2 l~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 48 (124)
|+.++|+.++..+|.. +++.++..++..+|.+++|.|+|+||+.++.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 6788899999778888 8888899999999999999999999988875
No 36
>PF14658 EF-hand_9: EF-hand domain
Probab=99.16 E-value=2.5e-10 Score=57.52 Aligned_cols=62 Identities=24% Similarity=0.484 Sum_probs=57.4
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHHhcCC
Q 040628 62 EAFKVFDKDQDGYISPNELRHVMMNIGE-KVTDEELEQMVREADLDGD-GQINYEEFARMMLLP 123 (124)
Q Consensus 62 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~l~~~ 123 (124)
.+|..+|.++.|.|....+...|+..+. ..++.++..+...+|+++. |.|+++.|+..|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3689999999999999999999999987 8889999999999999988 999999999998754
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.13 E-value=7.3e-10 Score=59.93 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=54.2
Q ss_pred HHHHHHHhh-hcCCCCC-ccCHHHHHHHHHHhC-----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKV-FDKDQDG-YISPNELRHVMMNIG-----EKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|+. .|++++| .|+.+||+.++.... ...++.+++.+++.+|.+++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 467788998 6777765 999999999998763 356678999999999999999999999998775
No 38
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.12 E-value=1.9e-09 Score=72.35 Aligned_cols=64 Identities=30% Similarity=0.553 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIG----EKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|+.+|.+++|.|+.+||.+++.-++ .+++.+++.++-+.+|.|++|.|++.||+...+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3467789999999999999999999987654 478899999999999999999999999998764
No 39
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.09 E-value=5.8e-09 Score=63.59 Aligned_cols=99 Identities=26% Similarity=0.407 Sum_probs=80.4
Q ss_pred CCHHH---HHHHHHhhccC-CCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc-cCHHHHHHHHHHhCCCCC
Q 040628 18 PTEEE---LRNMISEVDVN-GNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGY-ISPNELRHVMMNIGEKVT 92 (124)
Q Consensus 18 ~~~~~---~~~~~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~~~~ 92 (124)
++..+ +...|.+++.. ++|.++.++|..+...... .....+++.++.+++|. |++.+|...+..+....+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N-----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN-----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC-----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 45555 44556667888 8999999999999844322 23557899999999998 999999999999876555
Q ss_pred HH-HHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 93 DE-ELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 93 ~~-~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
.+ .++-+|+.+|.+++|.|+.+++...+.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~ 131 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILR 131 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 55 888999999999999999999998775
No 40
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8.5e-10 Score=71.12 Aligned_cols=117 Identities=24% Similarity=0.414 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHc-CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchH----HHHHHHHHhhhcCCCCCccC
Q 040628 2 ITIEELAVAIKSL-DQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEA----QEELKEAFKVFDKDQDGYIS 76 (124)
Q Consensus 2 l~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~ 76 (124)
++..||...|.== ...+..-.+.+-+..+|+|+||.|+++||+.-+......... ..+-...+..+|+|++|+++
T Consensus 180 lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~ 259 (325)
T KOG4223|consen 180 LTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLD 259 (325)
T ss_pred ccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccC
Confidence 4555555444211 122344567777888999999999999999888655432111 12234677789999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 040628 77 PNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFAR 118 (124)
Q Consensus 77 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 118 (124)
.+|+...+.-.+......+...++...|.|++|++|++|.+.
T Consensus 260 ~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 260 GDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 999998887767778889999999999999999999998764
No 41
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1e-09 Score=70.72 Aligned_cols=122 Identities=25% Similarity=0.344 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhc------ccch-------HHHHHHHHHhhh
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKM------KENE-------AQEELKEAFKVF 67 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~------~~~~-------~~~~~~~~f~~~ 67 (124)
+|+.+|+..++.......-..+...-|..++.+.+|.|+|+++........ .... ....-...|++.
T Consensus 93 fv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~A 172 (325)
T KOG4223|consen 93 FVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAA 172 (325)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhc
Confidence 467778888877654444456677778888999999999999988875421 1111 112345679999
Q ss_pred cCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 68 DKDQDGYISPNELRHVMMNIG-EKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 68 D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
|.+++|.+|.+||..++.--- ..+..-.+..-++..|.|++|+|+++||+.-+..
T Consensus 173 D~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 173 DQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred ccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 999999999999999986443 3455556788888999999999999999876543
No 42
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.06 E-value=2e-09 Score=58.17 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcc-CCCCcccHHHHHHHHHHhcccchHH-HHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVDV-NGNGTIEFGEFLNLMARKMKENEAQ-EELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+...|+.+|. +++|.|+..|+..++....+..... ..+..+++.+|.+++|.|+++||..++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 357889999999 9999999999999998744433223 679999999999999999999999988764
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.05 E-value=3.7e-09 Score=64.81 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 040628 20 EEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQM 99 (124)
Q Consensus 20 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 99 (124)
-..+...|...|.++.|.|+-+|+.+++......+-..+.++.+...+|.+++|.|.+.||..+++.+. ....+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNV 129 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHH
Confidence 357888999999999999999999999976666555668889999999999999999999999998863 77889
Q ss_pred HHhhCCCCCCceeHHHHHHHhcC
Q 040628 100 VREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
|+.+|.|++|.|+..|+...+..
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQ 152 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHH
Confidence 99999999999999999988754
No 44
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.04 E-value=5.7e-09 Score=69.44 Aligned_cols=98 Identities=21% Similarity=0.400 Sum_probs=84.8
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQ 98 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 98 (124)
.+.+++.+|+.+|.+++|.++..+....+..........+....+|+..|.+.+|.+++++|+.-+.. .+.++..
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~ 86 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYR 86 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHH
Confidence 34678999999999999999999999998765544455677889999999999999999999999876 4567888
Q ss_pred HHHhhCCCCCCceeHHHHHHHhc
Q 040628 99 MVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 99 ~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+|++.|.+++|.|+..|.-..+.
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHH
Confidence 99999999999999998877664
No 45
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.02 E-value=2.2e-09 Score=58.06 Aligned_cols=65 Identities=15% Similarity=0.433 Sum_probs=53.5
Q ss_pred HHHHHHHhhhcCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 58 EELKEAFKVFDKD--QDGYISPNELRHVMM-NIGEKVT----DEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 58 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..+..+|+.|+.. .+|.|+.++++.++. ..+..++ +++++.++..+|.+++|.|+|++|+..+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567788988866 478999999999996 4455555 889999999999999999999999987753
No 46
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.94 E-value=1.3e-08 Score=54.93 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=55.2
Q ss_pred HHHHHHHHhhc-cCCCC-cccHHHHHHHHHHh----cccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVD-VNGNG-TIEFGEFLNLMARK----MKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+..+|+.+| .+++| .|+..++..++... .......+.+..+++.+|++++|.|++++|..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36788999998 78999 69999999999762 2333344679999999999999999999999888654
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.93 E-value=1.6e-08 Score=55.24 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=53.9
Q ss_pred HHHHHHHhhc-cCCCC-cccHHHHHHHHHHhc----ccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 22 ELRNMISEVD-VNGNG-TIEFGEFLNLMARKM----KENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 22 ~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+.++|..++ .+++| +|+.+|+..++.... ........+..+++.+|.+++|.|+++||..++..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5677799998 67888 699999999996632 222244679999999999999999999999998764
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.89 E-value=2.7e-08 Score=54.63 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+..+|..+|.+++|.|+.+++..++... . -..+.+..++..+|.+++|.|++++|..++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 467888999999999999999999999763 2 234678899999999999999999999988654
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.88 E-value=2e-08 Score=50.09 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=51.5
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 23 LRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 23 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
+..+|..+|.+++|.|++++|..++.... .+...+.+..+|..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56788999999999999999999997543 34445778889999999999999999998765
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.86 E-value=2.2e-08 Score=51.17 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=51.6
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 24 RNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 24 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
+.+|..+|.+++|.|+.+|+..++... . .....+..+|..+|.+++|.|++++|..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467889999999999999999998654 2 244678899999999999999999999888654
No 51
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.86 E-value=2.3e-08 Score=60.73 Aligned_cols=66 Identities=32% Similarity=0.587 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
...+..+|..||.+.+|+|+..|++.++..+|.+.+-=-++.+++..|.|.+|+|++.+|.-+.+.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 356788999999999999999999999999999888888999999999999999999999877653
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.85 E-value=4e-08 Score=53.07 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcc--CCCCcccHHHHHHHHHHhcccc----hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVDV--NGNGTIEFGEFLNLMARKMKEN----EAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~~~~----~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+...|..+|. +++|.|+.+++..++....... ...+.+..++..+|.+++|.|++++|..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 467788999999 8999999999999986532221 124678999999999999999999999988764
No 53
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.82 E-value=5.8e-08 Score=52.92 Aligned_cols=67 Identities=16% Similarity=0.345 Sum_probs=55.2
Q ss_pred HHHHHHHHhhc-cCCCC-cccHHHHHHHHHHhccc----chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVD-VNGNG-TIEFGEFLNLMARKMKE----NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+.+.|..+| .+++| .|+.+|+..++...... ....+.+..+++.+|++++|.|++++|..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56889999997 99999 59999999999642221 1234678999999999999999999999988764
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=2.5e-07 Score=53.15 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=84.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCC--CCCccCHHHHHHHHHHhC---CCCCHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKD--QDGYISPNELRHVMMNIG---EKVTDEE 95 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~---~~~~~~~ 95 (124)
.+++++|..||..+||+|++.....+++.....|+. ..+......++++ +-..|++++|..++..++ ...+.++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~-aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTN-AEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcH-HHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 789999999999999999999999998877666666 6677788887776 446899999999998775 3567788
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 96 LEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 96 ~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+-.-++.+|.+++|.|...++...|.
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHH
Confidence 88889999999999999999887664
No 55
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.78 E-value=4.3e-08 Score=52.95 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCcccHHHHHHHHHHh--cccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 35 NGTIEFGEFLNLMARK--MKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 35 ~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
+|.|+.+||..++... .......+.+..+++.+|.+++|.|++++|..++..
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4555555555555321 122223345555555555555555555555554443
No 56
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.77 E-value=1e-07 Score=52.13 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcc-CC-CCcccHHHHHHHHHHhc----ccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 21 EELRNMISEVDV-NG-NGTIEFGEFLNLMARKM----KENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 21 ~~~~~~~~~~d~-~~-~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
..+...|..+|. ++ +|.|+.+|+..++.... ......+.+..++..+|.+++|.|++++|..++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 468889999987 86 69999999999986422 1223446789999999999999999999998887643
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.76 E-value=9.7e-08 Score=54.04 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
....+.-.|..+|.|++|.|+.+|+..+. . ......+..+|..+|.+++|.||.+||...+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 33568889999999999999999999775 1 1223567889999999999999999999988
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.73 E-value=1.8e-07 Score=50.61 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=52.4
Q ss_pred HHHHHHHh-hccCCCC-cccHHHHHHHHHHhccc----chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 22 ELRNMISE-VDVNGNG-TIEFGEFLNLMARKMKE----NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 22 ~~~~~~~~-~d~~~~g-~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+..+|.. ++.+++| .|+.+||..++....+. ......+..+++.+|.+++|.|+++||..++..+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45667777 6677765 99999999999776432 2334678899999999999999999999988664
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.71 E-value=2.6e-08 Score=42.45 Aligned_cols=23 Identities=52% Similarity=0.837 Sum_probs=9.8
Q ss_pred HHHhhhcCCCCCccCHHHHHHHH
Q 040628 62 EAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 62 ~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
.+|+.+|+|++|.|+++||..++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH
Confidence 34444444444444444444443
No 60
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.66 E-value=1.5e-06 Score=50.86 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEK-VTDEELEQM 99 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~ 99 (124)
.++.+.|..+|+|+||.|+.+++...+...... ...+.+..++. ..+|.|++.-|.+++..--.. -+++.+-.+
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 467778888899999999999999998876655 33355555554 367889988888887654333 245568889
Q ss_pred HHhhCCCCCCceeHHHHHHHhcC
Q 040628 100 VREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 100 ~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
|+.||+++.|.|.-+.+..+|+.
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHH
Confidence 99999999999998888887754
No 61
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.65 E-value=6.7e-08 Score=41.16 Aligned_cols=28 Identities=39% Similarity=0.802 Sum_probs=25.5
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMAR 49 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 49 (124)
+++.+|+.+|+|++|.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999864
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.65 E-value=4.3e-07 Score=50.42 Aligned_cols=62 Identities=35% Similarity=0.632 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
..+.+..+|...|+ .+|.|+.++.+.++...+ ++.+.+.++|...|.+++|.++++||+-.|
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 44667888998886 578999999999888765 888899999999999999999999998765
No 63
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.63 E-value=2.3e-07 Score=44.32 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMAR 49 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 49 (124)
+|+..|++++|+.+++.+++.....+|+..|.+++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999988753
No 64
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.63 E-value=5.4e-07 Score=61.04 Aligned_cols=101 Identities=21% Similarity=0.374 Sum_probs=79.0
Q ss_pred CCHHHHHHHHH----hhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh------
Q 040628 18 PTEEELRNMIS----EVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI------ 87 (124)
Q Consensus 18 ~~~~~~~~~~~----~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~------ 87 (124)
++..-++++|. .+....+|+|+|++|+-++.......++ +-+.-.|+.+|-+++|.++..++.-+....
T Consensus 308 lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~-~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~ 386 (493)
T KOG2562|consen 308 LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP-ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMEC 386 (493)
T ss_pred hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc-cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHh
Confidence 56778889998 4445568999999999998654433333 667889999999999999999999887653
Q ss_pred -C-CC-CCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 040628 88 -G-EK-VTDEELEQMVREADLDGDGQINYEEFARM 119 (124)
Q Consensus 88 -~-~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 119 (124)
+ .. .-+..+.+++....+...++|++++|..+
T Consensus 387 ~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 387 MGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred cCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 2 22 22455777888899999999999999874
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.60 E-value=6.4e-07 Score=48.40 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=52.1
Q ss_pred HHHHHHHhhccC--CCCcccHHHHHHHHHHhcccchH----HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 22 ELRNMISEVDVN--GNGTIEFGEFLNLMARKMKENEA----QEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 22 ~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+-.+|..++.. .+|.|+.+|+..++....+.... ...+..+|+.+|.+++|.|++++|..++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456677777755 36899999999999654433222 5789999999999999999999999988764
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=9.2e-07 Score=63.38 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHH-------------------------------
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMAR------------------------------- 49 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~------------------------------- 49 (124)
+|+-++-++++...| ++...+..+|...|.|+||+++..||..+|..
T Consensus 31 fitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsll~~~~~~~p~~~p 108 (1118)
T KOG1029|consen 31 FITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSLLKQPPRNAPSTWP 108 (1118)
T ss_pred ccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHHhccCCcCCCCCCC
Confidence 466677778887777 56678999999999999999999999988822
Q ss_pred ------------------------------------------------------------------------------hc
Q 040628 50 ------------------------------------------------------------------------------KM 51 (124)
Q Consensus 50 ------------------------------------------------------------------------------~~ 51 (124)
+.
T Consensus 109 ~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~~~~~s~~q~~eWA 188 (1118)
T KOG1029|consen 109 GFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRPSIESVNQLEEWA 188 (1118)
T ss_pred ccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcCccchhhhhhhhcc
Confidence 00
Q ss_pred ccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 52 KENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 52 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
-.....-.++.+|+.+|+..+|+++-..-+.+|...+ ++.-.+.+++..-|.|+||+++.+||+-.|
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 0001123568899999999999999999999886654 777889999999999999999999998765
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.58 E-value=1.1e-06 Score=47.36 Aligned_cols=63 Identities=16% Similarity=0.435 Sum_probs=44.9
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNI-----GEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|..|..+ .+.++..||+.++..- ...-.+..++.+++..|.|++|.|+|.||...+.
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3455677777743 4578888888887542 2344667788888888888888888888887653
No 68
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.54 E-value=5.1e-07 Score=60.79 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=38.5
Q ss_pred CccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcCC
Q 040628 73 GYISPNELRHVMMN-IGEKVTDEELEQMVREADLDGDGQINYEEFARMMLLP 123 (124)
Q Consensus 73 g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 123 (124)
+.|+..+|+.+... .|.++++..++.+|..||.|++|.++.+||+..|.++
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 45555566555543 3667777777888899999999999999999988653
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.50 E-value=2.2e-07 Score=40.27 Aligned_cols=26 Identities=58% Similarity=0.984 Sum_probs=18.2
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHH
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMM 85 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~ 85 (124)
++.+|+.+|.+++|.|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45677777777777777777777776
No 70
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.49 E-value=7.7e-07 Score=42.51 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 75 ISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 75 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+++.|++.+|+.++..++++.+..+|+.+|.+++|.+..+||..+..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67778888888888778888888888888888888888777776653
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=98.47 E-value=1.2e-06 Score=44.33 Aligned_cols=60 Identities=12% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC-CccCHHHHHHHHH
Q 040628 26 MISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQD-GYISPNELRHVMM 85 (124)
Q Consensus 26 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-g~i~~~e~~~~l~ 85 (124)
.|..+|.++.|.|.-..++.++.........+..+..+...+||++. |.|+++.|..+++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 45566666666666666666665444423333566666666666666 6666666666654
No 72
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.46 E-value=3e-06 Score=57.42 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 54 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
......++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34456788999999999999999999842 467999999999999999999988753
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.40 E-value=2.7e-06 Score=57.59 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 15 DQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 15 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
|.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.+++|.|+.+||..+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5556778999999999999999999999952 3568999999999999999999998764
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.34 E-value=9.5e-06 Score=43.79 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhccc----chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKE----NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+-.+|..+.. ..++++..||..++....+. +.....+..+++.+|.|++|.|++.||..++..+
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34556777763 35689999999999776542 3345778999999999999999999999988764
No 75
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.28 E-value=2e-05 Score=60.49 Aligned_cols=113 Identities=21% Similarity=0.438 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHcCCCCCH-------HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc-hHHHHHHHHHhhhcCCCC
Q 040628 1 CITIEELAVAIKSLDQNPTE-------EELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN-EAQEELKEAFKVFDKDQD 72 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~-------~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~ 72 (124)
.|+..+|+.+|+++|..+|- .+++.++...|++.+|.|+.++|++++...-+.. .....+..+|+.+|. +.
T Consensus 2269 ~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~ 2347 (2399)
T KOG0040|consen 2269 RLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GK 2347 (2399)
T ss_pred CCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CC
Confidence 47889999999999987732 3799999999999999999999999997764432 233589999999999 66
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhh----CC----CCCCceeHHHHHHHhc
Q 040628 73 GYISPNELRHVMMNIGEKVTDEELEQMVREA----DL----DGDGQINYEEFARMML 121 (124)
Q Consensus 73 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~~~i~~~ef~~~l~ 121 (124)
.+|+..+....+ +.++.+-++..+ ++ .-.+.+.|.+|...+.
T Consensus 2348 ~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2348 PYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred ccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 789888776554 556655555543 33 2234688999987764
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.28 E-value=2.6e-05 Score=53.79 Aligned_cols=116 Identities=24% Similarity=0.337 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHc-CC-CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHH
Q 040628 2 ITIEELAVAIKSL-DQ-NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNE 79 (124)
Q Consensus 2 l~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (124)
++..+|.+....+ +. .++++.++.+....|..+||.|+|+||+.+=. ..+ .+......+|+.+|..++|.++.++
T Consensus 53 mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~-~lC--~pDal~~~aFqlFDr~~~~~vs~~~ 129 (694)
T KOG0751|consen 53 MTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFES-VLC--APDALFEVAFQLFDRLGNGEVSFED 129 (694)
T ss_pred cCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHh-hcc--CchHHHHHHHHHhcccCCCceehHH
Confidence 4556665554443 33 25556666666667888999999999987743 333 2345677899999999999999999
Q ss_pred HHHHHHHhCC------CCC-----------------------------HHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 80 LRHVMMNIGE------KVT-----------------------------DEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 80 ~~~~l~~~~~------~~~-----------------------------~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
+..++..... .++ .+...+.|...|+.++|.|+--+|.+.+
T Consensus 130 ~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~im 205 (694)
T KOG0751|consen 130 VADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIM 205 (694)
T ss_pred HHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhh
Confidence 9999876421 111 1334445556677777777766666654
No 77
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.23 E-value=3.4e-06 Score=55.07 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMV 100 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 100 (124)
..+..+|..||.+.+|.++|.+.+..+......+.....++-+|+.|+...+|.+...++..+++... +...=.+-.+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 56788999999999999999999999977766677778899999999999999999999999988643 12222344589
Q ss_pred HhhCCCCCCceeHHHHHHHhcC
Q 040628 101 READLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 101 ~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
...+...+|+|++.+|.+++..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHh
Confidence 9999999999999999988653
No 78
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.23 E-value=5.8e-06 Score=44.09 Aligned_cols=64 Identities=23% Similarity=0.553 Sum_probs=52.4
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHhcCC
Q 040628 59 ELKEAFKVFDKDQDGYISPNELRHVMMNIGE--KVTDEELEQMVREADLD----GDGQINYEEFARMMLLP 123 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~ 123 (124)
++..+|..+.. +.+.|+.++|..+|...+. ..+.+.+..++..+.++ ..+.+++++|..+|.++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36678888866 6789999999999987653 46889999999998655 46899999999999764
No 79
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.21 E-value=4.5e-06 Score=52.64 Aligned_cols=121 Identities=20% Similarity=0.270 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc-----------------------
Q 040628 1 CITIEELAVAIKSLD---QNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN----------------------- 54 (124)
Q Consensus 1 ~l~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----------------------- 54 (124)
+|+..|+++++..-. +.-...+....|+..|++++|.|+|+||..-+.......
T Consensus 117 kisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqev 196 (362)
T KOG4251|consen 117 KISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEV 196 (362)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHH
Confidence 466777777765421 112234566678888999999999999986652211000
Q ss_pred ------------------------------------hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-----CCCCCH
Q 040628 55 ------------------------------------EAQEELKEAFKVFDKDQDGYISPNELRHVMMNI-----GEKVTD 93 (124)
Q Consensus 55 ------------------------------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~ 93 (124)
-...-+..+.+.+|++++..++.++|....-.. |..+.+
T Consensus 197 lenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdidd 276 (362)
T KOG4251|consen 197 LENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD 276 (362)
T ss_pred HHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHH
Confidence 001234567888999999999999987654221 233332
Q ss_pred ----HHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 94 ----EELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 94 ----~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
...+.+=+.+|.|.+|.++++++..++-
T Consensus 277 nwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 277 NWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred HHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 2234455567889999999999988753
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.20 E-value=3.3e-06 Score=34.60 Aligned_cols=20 Identities=50% Similarity=0.752 Sum_probs=9.8
Q ss_pred HHhhhcCCCCCccCHHHHHH
Q 040628 63 AFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~ 82 (124)
+|+.+|.|++|.|+.+|+..
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 44444555555555544444
No 81
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.1e-05 Score=54.56 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
.+.+.++..|+-||.|++|.|+.+||..++
T Consensus 230 ~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 230 IPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred cCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 344455555666666666666666666555
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.20 E-value=2.2e-06 Score=35.15 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=11.9
Q ss_pred HHHHHhhccCCCCcccHHHHHH
Q 040628 24 RNMISEVDVNGNGTIEFGEFLN 45 (124)
Q Consensus 24 ~~~~~~~d~~~~g~i~~~ef~~ 45 (124)
+..|+.+|.|++|.|+.+||.+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3455555555555555555554
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.14 E-value=1.5e-05 Score=54.25 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHh---cccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARK---MKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
....++.+|+.+|.|++|.|+.+||..++... .+.+-..+.+..+.+.+|-|++|.|+.+||..+++-.
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 34568899999999999999999999988543 3344556788999999999999999999999988754
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.08 E-value=4.2e-05 Score=58.82 Aligned_cols=97 Identities=24% Similarity=0.420 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhccc------chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC--CCCC
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKE------NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG--EKVT 92 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~ 92 (124)
.++.-+|+.||.+.+|.+++++|..++...... ..+...+..+....||+.+|+|+..+...++-... .-.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 566678888899989999999998888765332 22344778888888999999999888888776543 2466
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHH
Q 040628 93 DEELEQMVREADLDGDGQINYEEFAR 118 (124)
Q Consensus 93 ~~~~~~~~~~~d~~~~~~i~~~ef~~ 118 (124)
+++|+.+|+.++. +...|+-++...
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHHh
Confidence 7788889988886 555666655543
No 85
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.06 E-value=0.00013 Score=44.83 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG--EKVTDEELEQM 99 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~ 99 (124)
.+..+|+.+|.+.||.|++.|+..++.+..-.+++ -.+..+....|.|.+|+|++.+|.-+++... .--.++.+..+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTH-L~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~L 178 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTH-LGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRL 178 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhh-HHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHH
Confidence 46678899999999999999999999765444433 5678889999999999999999999988653 22334444445
Q ss_pred HHh--hCCCCCCceeHHHH
Q 040628 100 VRE--ADLDGDGQINYEEF 116 (124)
Q Consensus 100 ~~~--~d~~~~~~i~~~ef 116 (124)
-+. .|....|.---..|
T Consensus 179 Ar~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 179 ARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred HHhcccchhhhhhhhHHHH
Confidence 444 56666665443333
No 86
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.05 E-value=2.7e-06 Score=48.04 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 040628 54 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARM 119 (124)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 119 (124)
......+...|..+|.|++|.|+..|+..+...+ ...+.=+..++..+|.|++|.|++.|+..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3445678889999999999999999998887644 122333677999999999999999999764
No 87
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.99 E-value=1.6e-05 Score=34.21 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.0
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMA 48 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~ 48 (124)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999986
No 88
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.98 E-value=0.00014 Score=50.28 Aligned_cols=115 Identities=18% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc---------------------------
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN--------------------------- 54 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--------------------------- 54 (124)
|+.+||+. ++.+-. .+.......|..||+.+.|.++++++..++.......
T Consensus 91 isf~eF~a-fe~~lC-~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~ 168 (694)
T KOG0751|consen 91 ISFQEFRA-FESVLC-APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAE 168 (694)
T ss_pred ccHHHHHH-HHhhcc-CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHH
Confidence 56677743 333311 3466778889999999999999999998884321100
Q ss_pred -------hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC-CCCCCceeHHHHHH
Q 040628 55 -------EAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREAD-LDGDGQINYEEFAR 118 (124)
Q Consensus 55 -------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~~~i~~~ef~~ 118 (124)
-..+....+|+..|+.++|.|+.-+|..++-....++..+.++..+-... .+...++++..|..
T Consensus 169 f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 169 FTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 11244667899999999999999999999887766666667776666553 34445777666653
No 89
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.97 E-value=2.2e-05 Score=49.61 Aligned_cols=97 Identities=18% Similarity=0.395 Sum_probs=74.7
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhcccch--------HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKENE--------AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTD 93 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~ 93 (124)
-+..++..+|++++..++..+|+........... -....+..=..+|.+.+|.+|+.++....--.+.....
T Consensus 237 mVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~al 316 (362)
T KOG4251|consen 237 MVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLAL 316 (362)
T ss_pred HHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhH
Confidence 4678888999999999999999977533221110 11233444457899999999999999887666666777
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHH
Q 040628 94 EELEQMVREADLDGDGQINYEEFAR 118 (124)
Q Consensus 94 ~~~~~~~~~~d~~~~~~i~~~ef~~ 118 (124)
.++..++...+.+++.+++.++++.
T Consensus 317 ne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 317 NEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHhhhccCCCcccCHHHHHH
Confidence 7888999999999999999999865
No 90
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.73 E-value=0.0013 Score=47.80 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELR 81 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 81 (124)
++..+..+++..+...+.......+++..+...++++..++|..+.......+ ++..+|..+-.. .+.++.+++.
T Consensus 153 ~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----ev~~~f~~~s~~-~~~ls~~~L~ 227 (746)
T KOG0169|consen 153 MSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP----EVYFLFVQYSHG-KEYLSTDDLL 227 (746)
T ss_pred cchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----hHHHHHHHHhCC-CCccCHHHHH
Confidence 56677777888877777777888888888777788888888888765443222 567777777655 7899999999
Q ss_pred HHHHHhC--CCCCHHHHHHHHHhhCCC----CCCceeHHHHHHHhcCC
Q 040628 82 HVMMNIG--EKVTDEELEQMVREADLD----GDGQINYEEFARMMLLP 123 (124)
Q Consensus 82 ~~l~~~~--~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~ 123 (124)
.++...+ .+.+.+.+..+++.+... ..+.++++.|..+|.++
T Consensus 228 ~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 228 RFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 9998875 368888889999888554 44669999999998764
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.72 E-value=0.00031 Score=39.07 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.....+|...+. .+|.|+-++...++... .-..+.+..+|...|.+++|.++.+||..++.-+
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456778888775 57999999988877533 3344788999999999999999999999987643
No 92
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00042 Score=48.31 Aligned_cols=62 Identities=34% Similarity=0.637 Sum_probs=48.1
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGE---KVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
..+...|...| +++|+|+..++..++...+. ....++++.++...+.+.+|.|++++|+..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 45667788888 88888888888888877653 3456778888888888888888888888754
No 93
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.44 E-value=0.0007 Score=46.49 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=75.3
Q ss_pred CCCHHHHHHH---HHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHh----hhcCCCCCccCHHHHHHHHHHhCC
Q 040628 17 NPTEEELRNM---ISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFK----VFDKDQDGYISPNELRHVMMNIGE 89 (124)
Q Consensus 17 ~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~ 89 (124)
.++.+....+ |..+|.+.+|.++.+++......... .--+.++|. ..-...+|.|++.+|..++-+.-.
T Consensus 271 ~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred heeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 3455566666 77889999999999998877533222 234566777 445567899999999999888766
Q ss_pred CCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 040628 90 KVTDEELEQMVREADLDGDGQINYEEFARM 119 (124)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 119 (124)
.-++.-++-+|+.+|.+++|.++..++..+
T Consensus 347 k~t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred CCCccchhhheeeeeccCCCcccHHHHHHH
Confidence 666777888999999999999998887654
No 94
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.44 E-value=0.00023 Score=29.10 Aligned_cols=22 Identities=45% Similarity=0.857 Sum_probs=9.6
Q ss_pred HHhhhcCCCCCccCHHHHHHHH
Q 040628 63 AFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l 84 (124)
+|..+|.+++|.|+..+|..++
T Consensus 5 ~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 5 AFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHCCCCCCcEeHHHHHHHH
Confidence 4444444444444444444433
No 95
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.42 E-value=0.0011 Score=38.90 Aligned_cols=85 Identities=16% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHH----HHHHHhhhcCCCCCccC
Q 040628 2 ITIEELAVAIKSLD-QNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEE----LKEAFKVFDKDQDGYIS 76 (124)
Q Consensus 2 l~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~----~~~~f~~~D~~~~g~i~ 76 (124)
||.++|..++..+. ..+..-...-.|+.+|-++++.|.-+++...+..........++ ...+..-.|.+++|+++
T Consensus 88 lsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 88 LSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLS 167 (189)
T ss_pred ccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCccc
Confidence 56777777777653 23444556667788899999999999999998877665444344 45566677999999999
Q ss_pred HHHHHHHHHH
Q 040628 77 PNELRHVMMN 86 (124)
Q Consensus 77 ~~e~~~~l~~ 86 (124)
+.+|..++..
T Consensus 168 ~~eFe~~i~r 177 (189)
T KOG0038|consen 168 FAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 96
>PLN02952 phosphoinositide phospholipase C
Probab=97.40 E-value=0.0038 Score=44.87 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=64.2
Q ss_pred CCCcccHHHHHHHHHHhc-ccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-----
Q 040628 34 GNGTIEFGEFLNLMARKM-KENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGE--KVTDEELEQMVREADL----- 105 (124)
Q Consensus 34 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~----- 105 (124)
+.|.++|++|..+..... .......++..+|..+...+ +.|+.++|..+|...+. ..+.+.+..+++.+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357999999988876543 22335578999999997644 68999999999998764 3566667777654411
Q ss_pred --CCCCceeHHHHHHHhcC
Q 040628 106 --DGDGQINYEEFARMMLL 122 (124)
Q Consensus 106 --~~~~~i~~~ef~~~l~~ 122 (124)
...+.+++++|..+|.+
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 12345899999999975
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0033 Score=35.34 Aligned_cols=63 Identities=27% Similarity=0.541 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh------C---CC-CCHHHHHHH----HHhhCCCCCCceeHHHHHHH
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNI------G---EK-VTDEELEQM----VREADLDGDGQINYEEFARM 119 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~------~---~~-~~~~~~~~~----~~~~d~~~~~~i~~~ef~~~ 119 (124)
++.--..|...|-+++++++--|+..++... | .+ .++.++..+ ++.-|.|++|.|+|-||++.
T Consensus 66 eqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 66 EQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3444568999999999999999998887643 2 12 344555554 44558899999999999875
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.30 E-value=0.00038 Score=28.39 Aligned_cols=27 Identities=41% Similarity=0.737 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 96 LEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 96 ~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
++.+|+.++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998764
No 99
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0013 Score=45.74 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 55 EAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
...+.+..-|+..-++-+|+|+..--+.++.+.. ++-.++.++|+..|.+++|.+++.||+..+.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3456777889999999999999998888887644 6778999999999999999999999998764
No 100
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.11 E-value=0.00027 Score=39.95 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 82 (124)
....+.-.|..+|.+++|.++..|+..+.....+ .+.-++..++..|.+++|.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~---~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP---PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST---TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh---hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4456777899999999999999998877543311 223467789999999999999998753
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.03 E-value=0.002 Score=34.19 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=49.9
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhccc-chHHHHHHHHHhhhcCC----CCCccCHHHHHHHHHHhC
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKE-NEAQEELKEAFKVFDKD----QDGYISPNELRHVMMNIG 88 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~~~ 88 (124)
++..+|..+.. +.+.|+.++|..++...-.. ......+..++..+.++ ..+.++.++|...|.+-.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 57889999966 67899999999999755443 23356777788877654 468999999999986643
No 102
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.60 E-value=0.0056 Score=43.93 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q 040628 38 IEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEE 115 (124)
Q Consensus 38 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~e 115 (124)
++|..|..++....+-+....-+.++|+.+|.+.+|.+++.++...|..+..+-..+.++-+|+.+++..+ ....++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 44444444444333333334457788999999999999999999988887666666778889999888777 555444
No 103
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.40 E-value=0.084 Score=38.88 Aligned_cols=97 Identities=19% Similarity=0.333 Sum_probs=71.8
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQ 98 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 98 (124)
....+..+|...|.+.+|.+++.+-..++... ...-....++..|+..+...++.+...++..+........ ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 34678889999999999999999988888543 3344446778888888988999999999988887765322 6666
Q ss_pred HHHhhCCCCCCceeHHHHHHHh
Q 040628 99 MVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 99 ~~~~~d~~~~~~i~~~ef~~~l 120 (124)
+|..+..+ .+.++..++..++
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHH
Confidence 66666533 6666666666554
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.32 E-value=0.013 Score=38.90 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCCCCH--HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHH
Q 040628 6 ELAVAIKSLDQNPTE--EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHV 83 (124)
Q Consensus 6 el~~~l~~~~~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~ 83 (124)
||.+.-+.+++.+.- +.+..........+.+.|-..||..-+..- -.+.++..|-.+|.+.+|.+++.+....
T Consensus 210 eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vp-----vsd~l~~~f~LFde~~tg~~D~re~v~~ 284 (412)
T KOG4666|consen 210 EFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVP-----VSDKLAPTFMLFDEGTTGNGDYRETVKT 284 (412)
T ss_pred HHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecc-----hhhhhhhhhheecCCCCCcccHHHHhhh
Confidence 454444544432211 233333333333445556666665544211 1267888999999999999999988887
Q ss_pred HHHh-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 84 MMNI-GEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 84 l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
+... +...+.+.++-.|+.|+...+|.+.-.+|.-++.
T Consensus 285 lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 285 LAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred heeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 7765 5788899999999999999999998877766553
No 105
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.25 E-value=0.048 Score=40.97 Aligned_cols=81 Identities=14% Similarity=0.349 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCC
Q 040628 38 IEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI----------GEKVTDEELEQMVREADLDG 107 (124)
Q Consensus 38 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~ 107 (124)
.+++.|..++.+. .+..++..+|..+..++..++|.+++..+++.. .....+..+..+++.+.++.
T Consensus 205 f~~e~f~~~l~kl----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhc----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 4566666666544 233568889999999888999999999999764 24577889999999998874
Q ss_pred ----CCceeHHHHHHHhcC
Q 040628 108 ----DGQINYEEFARMMLL 122 (124)
Q Consensus 108 ----~~~i~~~ef~~~l~~ 122 (124)
.|+++-+.|+.+++.
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 489999999999986
No 106
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.20 E-value=0.0024 Score=42.29 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGE-KVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..++..|..+|+|+++.|...|++.+-+.+-. .-...=.+.+++..|.|++.+|++.|+..+|.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 35677899999999999998887665544322 12233356688888999999999999988875
No 107
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.10 E-value=0.09 Score=28.49 Aligned_cols=62 Identities=11% Similarity=0.305 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHh-------C----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNI-------G----EKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
++++.+|+.+ .+++|.++...+...|+.. | .+-.+..++.+|+.. .....|+..+|.++++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5667778877 5667888888888777653 2 123566777777775 35567899999988865
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.99 E-value=0.022 Score=40.66 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
...+.-|..+|.++.|.+++.++..+++..+.+++.+.++.+++..+.+.+|.+...+|.+.+.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 3456678999999999999999999999999899999999999999999999999999988765
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.78 E-value=0.027 Score=37.79 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
...+..+|..+|.+.+|.++..|++.+-.. -.+.=++.+|...|...+|.|+-.|.+.++.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 456888999999999999999998887644 34555778999999999999999998887764
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.49 E-value=0.15 Score=30.46 Aligned_cols=47 Identities=15% Similarity=0.423 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 74 YISPNELRHVMMNIG---EKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 74 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
.|+-..|..+++..+ ..++...++-+|..+-..+...|+|++|..+|
T Consensus 18 ~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 18 EMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp EEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 444444444444432 13444444445555433333445555554443
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.35 E-value=0.018 Score=38.33 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 22 ELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
.+.-.|..+|+|.++.|+..|+.-+=...........-.+.+|+..|-|++..|+++|+...|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34556778899999999888877665444444556667888999999999999999999988854
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.14 E-value=0.16 Score=30.87 Aligned_cols=67 Identities=18% Similarity=0.371 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchH------HHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEA------QEELKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
++.+..++++|.+++....+.+++.|+..++.......+. .-+....|.. -++++|.+..++++.+.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 4667788888888887777788888888887654332221 1222223332 34567788888777665
No 113
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.021 Score=43.02 Aligned_cols=62 Identities=31% Similarity=0.461 Sum_probs=53.8
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
..+..+|...|.+++|.|+..+...++.. .+++...+.+++...+..+.|.+++.+|+-.+.
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 45667899999999999999999998887 458889999999999999999999998876553
No 114
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.94 E-value=0.26 Score=35.11 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=50.7
Q ss_pred CCHHH---HHHHHHhhccCCCCcccHHHHHHHHHHhccc--chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 18 PTEEE---LRNMISEVDVNGNGTIEFGEFLNLMARKMKE--NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 18 ~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
++..+ +.+-|...| +++|.|+..+...++...... ....+.++.+....+.+.+|.|++++|..++...
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 45544 445566667 888999999999888654322 2335778889999999999999999998866443
No 115
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=94.75 E-value=0.093 Score=27.04 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcc
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMK 52 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 52 (124)
..++..+..+...++.-..+.|+.++|++.+.....
T Consensus 21 ~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355556666666665555666777777777665533
No 116
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.68 E-value=0.093 Score=38.03 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHcCC-CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHH
Q 040628 3 TIEELAVAIKSLDQ-NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNEL 80 (124)
Q Consensus 3 ~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 80 (124)
...++..+++.+.. .-+..-..++|+..|.+.+|.+++.+++..+.... .....+.+.-+|+.+|++.+ ..+.++.
T Consensus 536 ~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 536 DYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34455555555422 13445688899999999999999999999996543 34444778889999999998 8888887
No 117
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.60 E-value=0.11 Score=41.42 Aligned_cols=59 Identities=25% Similarity=0.463 Sum_probs=50.9
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 63 AFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
.|+.||+++.|.|+..+|..++... .+.+.++++-++.....+.+..++|++|++-..-
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 5888999999999999999998764 4567889999999999999999999999986543
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.50 E-value=0.21 Score=29.88 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHcCC---CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQ---NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 2 l~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 50 (124)
|+-..|.++++..++ .++...+..+|.++...+..+|+|++|..+|...
T Consensus 19 m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 19 MDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp EEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 456778888888654 4788999999999866666779999999988654
No 119
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.37 E-value=0.15 Score=33.89 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=14.2
Q ss_pred HHHHhhCCCCCCceeHHHHHHH
Q 040628 98 QMVREADLDGDGQINYEEFARM 119 (124)
Q Consensus 98 ~~~~~~d~~~~~~i~~~ef~~~ 119 (124)
++++..|.|.+..|++++|+..
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhh
Confidence 4556666677767777776654
No 120
>PLN02222 phosphoinositide phospholipase C 2
Probab=94.29 E-value=0.38 Score=34.99 Aligned_cols=62 Identities=16% Similarity=0.420 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCceeHHHHHHHhcC
Q 040628 59 ELKEAFKVFDKDQDGYISPNELRHVMMNIGE--KVTDEELEQMVREADL-DGDGQINYEEFARMMLL 122 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~l~~ 122 (124)
++..+|..+.. ++.++.++|..+|...+. ..+.+.+..+++.+.. ...+.++++.|..+|.+
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45555555542 245666666555555442 2344455555554421 12334566666666554
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.25 E-value=0.42 Score=29.10 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=57.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHH----HhhhcCCCCCccCHHHHHHHHHHh---------
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEA----FKVFDKDQDGYISPNELRHVMMNI--------- 87 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~----f~~~D~~~~g~i~~~e~~~~l~~~--------- 87 (124)
..+++-..-+|+|+||.|...|=.+.+...-......-....+ +.... ..+.++-.-|..-+..+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T--~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPT--QPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCcc--CCCCCCCCceeEEeecccccccCCCc
Confidence 3567777788999999999888777776554332221111111 11111 12233322222222111
Q ss_pred -----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 88 -----GEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 88 -----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
.-.+.++.++.+|..++..+.+.+++.|....+..
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 11356678888999988877888888888877654
No 122
>PLN02228 Phosphoinositide phospholipase C
Probab=94.23 E-value=0.43 Score=34.63 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=13.6
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMA 48 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 48 (124)
++.++..+|..+..+ +.++.++|..++.
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~ 49 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVS 49 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHH
Confidence 445555555554322 3455555555543
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.62 E-value=0.29 Score=33.12 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
....++.=+|..+|.+.|+.++..|+..+.... .+.-++..|...|..++|.|+..|+...+....
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 345678889999999999999999987775432 236688999999999999999999988877655
No 124
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=93.38 E-value=0.44 Score=28.00 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCC-------CCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNG-------NGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQ 71 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 71 (124)
||+.||.++=+=.- .+...+..++..|..++ ++.|+|+-|..++........+.+-..++|..+-+..
T Consensus 8 lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 8 LSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 56777765543332 34456777777774332 5679999999999877776677677788888775443
No 125
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.06 E-value=0.11 Score=29.33 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMAR 49 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 49 (124)
+++++++.+|..+-.+..|++.|.||..-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999999999999999987753
No 126
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=0.26 Score=34.96 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=44.8
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 25 NMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 25 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
.-|+.+..|..|.|+=..-..++.+. .....++..+|+..|-+++|.++.+||..++.-
T Consensus 235 nQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 235 NQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhhhcccCCcccccccHHHHhhhhhc---cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34566677888887766666665432 234468899999999999999999999998754
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.28 E-value=0.042 Score=28.23 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-------CCCceeHHHHHHHh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLD-------GDGQINYEEFARMM 120 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~l 120 (124)
+.+..+|+.+ .++.++||..+++..|. +++.+-+...+.+- ..|.++|..|+..|
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 6688899999 56678999999998873 23334455554322 23678888887654
No 128
>PLN02230 phosphoinositide phospholipase C 4
Probab=92.27 E-value=1.5 Score=32.15 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHhcC
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNIGE---KVTDEELEQMVREADL-------DGDGQINYEEFARMMLL 122 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~l~~ 122 (124)
..++..+|..+..++ +.|+.++|..+|...+. ..+.+.+..++..+-. -..+.++++.|..+|.+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 356777777775443 67777777777776652 2344555555544311 12335778888777765
No 129
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.02 E-value=1.5 Score=25.45 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhhccCC--CCcccHHHHHHHHHHhcc-------c----------chHHHHHHHHHhhhcCCCCCccCHHH
Q 040628 19 TEEELRNMISEVDVNG--NGTIEFGEFLNLMARKMK-------E----------NEAQEELKEAFKVFDKDQDGYISPNE 79 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~~~-------~----------~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (124)
+-..+.++|+...-+. +..++..+...++...+. . ...+-.+..+...||+.++|.|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 3445666666665442 466888888888765541 1 01112345567777887778887777
Q ss_pred HHHHHHH
Q 040628 80 LRHVMMN 86 (124)
Q Consensus 80 ~~~~l~~ 86 (124)
++..+..
T Consensus 119 ~KvaL~~ 125 (127)
T PF09068_consen 119 FKVALIT 125 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.00 E-value=0.73 Score=35.09 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTD-----EELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
..+++..|+..++...|..+.+++...+...|..... +++..+....+++..|++++.+|...|.+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4578889999999999999999999999999876553 22333444456666789999999988865
No 131
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.71 E-value=2.3 Score=32.57 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHcCCCCCH-H----HHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccC
Q 040628 2 ITIEELAVAIKSLDQNPTE-E----ELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYIS 76 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~-~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 76 (124)
++..++..+|..+|...-+ . ++..++...+++.-|.+++.+|...+............+...|+.+-+.+. ++.
T Consensus 764 a~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL 842 (890)
T KOG0035|consen 764 ASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLL 842 (890)
T ss_pred CCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHH
Confidence 4678899999999887654 2 233344444555568999999999998877777777788889998888776 778
Q ss_pred HHHHHH
Q 040628 77 PNELRH 82 (124)
Q Consensus 77 ~~e~~~ 82 (124)
.+++..
T Consensus 843 ~eEL~~ 848 (890)
T KOG0035|consen 843 LEELVR 848 (890)
T ss_pred HHHHHh
Confidence 777776
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=90.46 E-value=5.7 Score=29.37 Aligned_cols=84 Identities=7% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHcCC--CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc-hHHHHHHHHHh----hhc---CCC
Q 040628 2 ITIEELAVAIKSLDQ--NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN-EAQEELKEAFK----VFD---KDQ 71 (124)
Q Consensus 2 l~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~----~~D---~~~ 71 (124)
+++.++....+.+.. ..+..++..+|..+..++ +.|+.++|..++...-... ...+....++. .+. ...
T Consensus 17 l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~ 95 (599)
T PLN02952 17 YNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYT 95 (599)
T ss_pred cCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccccc
Confidence 567788766666542 247789999999996544 6899999999997653322 12223333333 221 122
Q ss_pred CCccCHHHHHHHHHH
Q 040628 72 DGYISPNELRHVMMN 86 (124)
Q Consensus 72 ~g~i~~~e~~~~l~~ 86 (124)
.+.++.+.|...|..
T Consensus 96 ~~~l~~~~F~~~l~s 110 (599)
T PLN02952 96 RHGLNLDDFFHFLLY 110 (599)
T ss_pred ccCcCHHHHHHHHcC
Confidence 345899999888853
No 133
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=0.38 Score=27.30 Aligned_cols=28 Identities=46% Similarity=0.905 Sum_probs=18.2
Q ss_pred CHHHHHHHHH----hhccCCCCcccHHHHHHH
Q 040628 19 TEEELRNMIS----EVDVNGNGTIEFGEFLNL 46 (124)
Q Consensus 19 ~~~~~~~~~~----~~d~~~~g~i~~~ef~~~ 46 (124)
++.++..++. .-|.++||.|+|.||...
T Consensus 111 sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 111 SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4455555444 446777888888888754
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.91 E-value=2.9 Score=32.02 Aligned_cols=120 Identities=12% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHcCCCCCH-HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHH--H--HHhhhcCCCCCccC
Q 040628 2 ITIEELAVAIKSLDQNPTE-EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELK--E--AFKVFDKDQDGYIS 76 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~--~--~f~~~D~~~~g~i~ 76 (124)
++..+++..|......++. ..+.+-+... .-+.+.++|+.|..+.............+. . +...-+...--.|+
T Consensus 161 isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~ 239 (1267)
T KOG1264|consen 161 ISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVY 239 (1267)
T ss_pred eeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEee
Confidence 4556666666666555444 3333444333 234577999999999877654332211111 1 12222222224799
Q ss_pred HHHHHHHHHHhCCCCCHH---HHHHHHHhhCC-----CCCCceeHHHHHHHhcC
Q 040628 77 PNELRHVMMNIGEKVTDE---ELEQMVREADL-----DGDGQINYEEFARMMLL 122 (124)
Q Consensus 77 ~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~-----~~~~~i~~~ef~~~l~~ 122 (124)
..+|.++|...+...... .+..++..|-. -....+.+.||+.+|-+
T Consensus 240 ~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 240 LQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 999999997655332222 34444444422 24457899999998854
No 135
>PLN02223 phosphoinositide phospholipase C
Probab=88.80 E-value=3.8 Score=29.77 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHH---HHhC--CCCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHhcC
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVM---MNIG--EKVTDEELEQMVREADLD--------GDGQINYEEFARMMLL 122 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~l~~ 122 (124)
+.+..+|..+. .+.|.++.+.+..++ ...+ ...+.++.+.+++.+-.. ..+.+++++|..+|.+
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45666666663 344566666666666 3332 234445555555543221 2245788888877765
No 136
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=0.62 Score=31.89 Aligned_cols=62 Identities=26% Similarity=0.437 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCCceeHHHHHH
Q 040628 57 QEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEE-LEQMVREADLDGDGQINYEEFAR 118 (124)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~ 118 (124)
.+.++++|..+|+..+|+|+..-+..++...+...++.+ +..+-+..+++.-|.|-..+|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 467899999999999999999999999988874444433 33333345666666665555443
No 137
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.45 E-value=10 Score=29.54 Aligned_cols=80 Identities=9% Similarity=0.304 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccch---------HHHHHHHHHhhhcCC----
Q 040628 4 IEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENE---------AQEELKEAFKVFDKD---- 70 (124)
Q Consensus 4 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~---------~~~~~~~~f~~~D~~---- 70 (124)
...+..++..+ .+..+++.+|..+..+..-.++.++++.++...-.+++ ....+..+.+.|.++
T Consensus 207 ~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 207 LEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 34455555544 34478999999998888789999999999965433322 235677788888666
Q ss_pred CCCccCHHHHHHHHHH
Q 040628 71 QDGYISPNELRHVMMN 86 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~ 86 (124)
..|.|+.+.|...+..
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 5688999999888765
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.41 E-value=3.6 Score=24.27 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHhcccchHHHHHHHHH------hhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCC
Q 040628 36 GTIEFGEFLNLMARKMKENEAQEELKEAF------KVFDKDQDGYISPNELRHVMMNIG-EKVTDEELEQMVREADLD 106 (124)
Q Consensus 36 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f------~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~ 106 (124)
+.++-.||.++-............+-.-| ..+++ .+.|+++.|+.+|+..- ..++++-..++|..|...
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~--~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNP--EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEE--TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCC--CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 45677777766543322222222222333 24443 34799999999999875 478999999999998543
No 139
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=3.3 Score=31.47 Aligned_cols=57 Identities=26% Similarity=0.509 Sum_probs=43.0
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 61 KEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 61 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
...|..+-+ ..|+|+.+.-+.++-..| ++...+.+++..-|.|+||+++..||.-.|
T Consensus 19 ~~qF~~Lkp-~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 19 DAQFGQLKP-GQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred HHHHhccCC-CCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 345555555 468898888888775544 777788888988899999999988887654
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=87.85 E-value=2.4 Score=21.68 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
++-+++..++...|..+++.++..++++-+..+.-..+-+.+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445666666666666666666666666544443334444444444
No 141
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=87.78 E-value=2 Score=21.41 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|..|+...+..++-.++..++..+|...
T Consensus 10 lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 10 LSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred ccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 67888888888888888888888888775
No 142
>PLN02228 Phosphoinositide phospholipase C
Probab=87.20 E-value=5.8 Score=29.13 Aligned_cols=67 Identities=15% Similarity=0.325 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHhcCC
Q 040628 55 EAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGE--KVTDEELEQMVREADLD----GDGQINYEEFARMMLLP 123 (124)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~ 123 (124)
.+..++..+|..+..+ +.|+.++|..+|...+. ..+.+.+..++..+... ..|.+++++|..+|.+.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3456788888888643 57999999999988763 34566778888887643 33679999999988763
No 143
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=86.93 E-value=2.6 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.453 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+.+.++.++.+.|..+++..++.+++.+
T Consensus 32 ine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 32 INEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677788888888888888888877765
No 144
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.19 E-value=2.5 Score=31.40 Aligned_cols=78 Identities=28% Similarity=0.526 Sum_probs=52.2
Q ss_pred CCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhCCC
Q 040628 35 NGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI---G-----EKVTDEELEQMVREADLD 106 (124)
Q Consensus 35 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~ 106 (124)
++ +++++|. ....+.++.++..|..+|. .+|.++.+++..++... + ...+.+....+++..+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 35 7777777 4444566778888888887 78888888888776543 1 233444555677777777
Q ss_pred CCCceeHHHHHHHh
Q 040628 107 GDGQINYEEFARMM 120 (124)
Q Consensus 107 ~~~~i~~~ef~~~l 120 (124)
+.+.+..+++...+
T Consensus 74 ~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 74 HKGYITNEDLEILL 87 (646)
T ss_pred ccceeeecchhHHH
Confidence 77776666655444
No 145
>PRK00523 hypothetical protein; Provisional
Probab=85.47 E-value=3.5 Score=21.33 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+.+.++.++.+.|..+++..++.+++.+
T Consensus 40 ine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 40 ITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677777778888888888888877766
No 146
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=85.19 E-value=4.6 Score=22.24 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMA 48 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 48 (124)
+..+..-+|.-+.-.++++++.++...+-..+....+..+....+.
T Consensus 21 P~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~ 66 (96)
T PF11829_consen 21 PPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAIT 66 (96)
T ss_dssp -HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHH
T ss_pred CCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 4455555566666666666666666666444443334444433333
No 147
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.92 E-value=3.6 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVD 31 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d 31 (124)
|+.+.++.++.+.|..+++..++++++.+.
T Consensus 39 ine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 39 INEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 566677777777777777777777777653
No 148
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=84.00 E-value=4.9 Score=21.59 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcc--cchHHHHHHHHHhhh
Q 040628 1 CITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMK--ENEAQEELKEAFKVF 67 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~ 67 (124)
.||..||.+.-+..|+..+.++.+.++..+..++-.-.+-++=..++..... ++.....+..+|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3788899999999999999999888888886666555566665555544332 233334455555543
No 149
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=82.59 E-value=1.3 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 36 GTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 36 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
--|++..+...+....+. ..+..+...|+.-+.+.|+.++|...++.+
T Consensus 7 p~~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPP----SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 346666666666555332 334444445555567789999998888875
No 150
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=82.30 E-value=6.8 Score=32.39 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=44.7
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 26 MISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 26 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
-|+.+|+++.|.|+..+|..++..... ....++..+......+.+...++.+|..-+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~--ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH--YTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc--chhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 356679999999999999999865432 223456666667777778889999998877543
No 151
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.21 E-value=6.6 Score=21.75 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhh---cCCCCCccCHHHHHHHHHHh
Q 040628 20 EEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVF---DKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 20 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~---D~~~~g~i~~~e~~~~l~~~ 87 (124)
...++.-|..+.. +|.+....|..++-.. ...+-..++|..+ -......|+.+|++.++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5677777887766 7889999988887543 1222333444433 22234578888887777553
No 152
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=82.08 E-value=6 Score=21.24 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
+++.+-..+|+..-.++ ..|.+.+|...+....+.....+ ...+=..+|--++|+||.-||-.+.+-++
T Consensus 4 ITK~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~~~~~~~-~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHPISSGLE-AMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHH-HHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcCCCchHH-HHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 45667777777764443 56999999999988776655422 23333467888999999999988887765
No 153
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=81.93 E-value=6.3 Score=22.10 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=45.4
Q ss_pred hccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh---C-CCCCHHHHHHHHHhhCC
Q 040628 30 VDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI---G-EKVTDEELEQMVREADL 105 (124)
Q Consensus 30 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d~ 105 (124)
+|...+..|+.++...++..- .-|+..|.....-||..-+.+++... | ..++.+-+..++..++.
T Consensus 12 YDT~tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cCCCccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 455566678888877776432 24666777666678887777776543 2 34777777888877765
Q ss_pred CCCCc
Q 040628 106 DGDGQ 110 (124)
Q Consensus 106 ~~~~~ 110 (124)
.-.|.
T Consensus 81 ~~q~~ 85 (107)
T TIGR01848 81 SMQSF 85 (107)
T ss_pred hHHHH
Confidence 44443
No 154
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.63 E-value=8.9 Score=22.24 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=56.0
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHhccc------chHHHHHHHHHhhhcCCC--CCccCHHHHHHHHHHhC------
Q 040628 23 LRNMISEVDVNGNGTIEFGEFLNLMARKMKE------NEAQEELKEAFKVFDKDQ--DGYISPNELRHVMMNIG------ 88 (124)
Q Consensus 23 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~------~~~~~~~~~~f~~~D~~~--~g~i~~~e~~~~l~~~~------ 88 (124)
+.+++..+ ..-+.|-|..+..+++...-. .-....+.++|+...-+. +..++..++..++..+.
T Consensus 2 m~~l~~~l--~~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~ 79 (127)
T PF09068_consen 2 MTELMQEL--QDFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKR 79 (127)
T ss_dssp HHHHHHHG--GGGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566666 333468888888887543211 122345677888665443 45799999999987652
Q ss_pred -CCCCH-----------HHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 89 -EKVTD-----------EELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 89 -~~~~~-----------~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
..... --++.++..+|+++.|.|+.-.|...+
T Consensus 80 ~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 80 LPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp STTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 11111 115568888999999999988886654
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.36 E-value=13 Score=27.49 Aligned_cols=67 Identities=7% Similarity=0.201 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc-hHHHHHHHHHhhhcC-CCCCccCHHHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN-EAQEELKEAFKVFDK-DQDGYISPNELRHVMMN 86 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~ 86 (124)
.++.++..+|..+.. ++.++.++|..++...-... ...+....++..+.. ...+.++.+.|...|..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 466799999999864 46899999999986543322 233455566665532 23567999999888854
No 156
>PRK01844 hypothetical protein; Provisional
Probab=79.75 E-value=6.7 Score=20.31 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+.+.++..+.+.|..+++..++.+.+.+
T Consensus 39 ine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 39 INEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677777888888888888888877766
No 157
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=79.42 E-value=5.1 Score=18.70 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 040628 4 IEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 4 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
.+|...+|.++| +++.++......... ...++-++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 357778888888 788899988888865 3346666665543
No 158
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=78.41 E-value=10 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=46.6
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh---CC-----CCCCceeHHHHHHHhcCC
Q 040628 63 AFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREA---DL-----DGDGQINYEEFARMMLLP 123 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~~~i~~~ef~~~l~~~ 123 (124)
+|..+-...++.+++-.|.++|+..|..-++..++.+++.+ +. ..-+.++-+.|..++.+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 56666555578999999999999999888887787777654 32 233578999999888764
No 159
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=78.27 E-value=28 Score=26.79 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=67.1
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-------------
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI------------- 87 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~------------- 87 (124)
..++-++..||...+|.|.--+|...+.. +......+.++.+|......++..+ ...|..+|...
T Consensus 470 ~~lN~llNvyD~~R~g~irvls~ki~~i~-lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAf 547 (966)
T KOG4286|consen 470 MCLNWLLNVYDTGRTGRIRVLSFKIGIIS-LCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAF 547 (966)
T ss_pred HHHHHHHHhcccCCCcceEEeeehhhHHH-HhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhh
Confidence 34677889999999999999999988854 4444555778899998876665443 55565555332
Q ss_pred C-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 88 G-EKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 88 ~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
| .++. ..++.+|+ ..++...|++..|..++..
T Consensus 548 GgsNve-psvrsCF~--~v~~~pei~~~~f~dw~~~ 580 (966)
T KOG4286|consen 548 GGSNIE-PSVRSCFQ--FVNNKPEIEAALFLDWMRL 580 (966)
T ss_pred cCCCCC-hHHHHHHH--hcCCCCcchHHHHHHHhcc
Confidence 3 2333 35677887 3456667889999888753
No 160
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.10 E-value=7.5 Score=19.91 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 040628 76 SPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARM 119 (124)
Q Consensus 76 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 119 (124)
+-+++..++...+..++++++..+++.-+..+--..+=+.+..+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 33467777777777778888777777754333333333344433
No 161
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=76.67 E-value=3.6 Score=30.15 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGE-KVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
+-+..+|..+|.+++|.++-.|+..+++..+. ++.+.... ...-.+..|.+++..|.+.+
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~---~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK---DSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc---ccceecccceeehhhHHHHH
Confidence 45678899999999999999999999988753 32211100 11122367788888887654
No 162
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=74.82 E-value=11 Score=25.69 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 71 QDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
.+|.||++|-...++..-...+++.++.+++.++ |+-+||...+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4678888888888777555566677777888776 6666666554
No 163
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=74.32 E-value=4.9 Score=21.24 Aligned_cols=31 Identities=13% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 040628 72 DGYISPNELRHVMMNIGEKVTDEELEQMVREAD 104 (124)
Q Consensus 72 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 104 (124)
.|+||++++..+|... .++.+.+..++..+.
T Consensus 19 ~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 4667766666666532 255666666666553
No 164
>PLN02230 phosphoinositide phospholipase C 4
Probab=73.60 E-value=29 Score=25.90 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc--hHHHHHHHHHhhh-------cCCCCCccCHHHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN--EAQEELKEAFKVF-------DKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~-------D~~~~g~i~~~e~~~~l~~ 86 (124)
.++.++..+|..+..++ +.++-++|..++...-... ...+....++..+ ..-..+.++.+.|...|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 46689999999996554 7899999999997654221 1223344444322 2223456999999988754
No 165
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=72.09 E-value=13 Score=19.99 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 040628 37 TIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMV 100 (124)
Q Consensus 37 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 100 (124)
.+|++++... .....+.....-..+.+.+-- |+.+...|...|..++ ++.+++..++
T Consensus 30 ~it~~dL~~~--GL~g~~~s~~rR~~l~~~L~i---Gy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGGPDSKERREKLGEYLGI---GYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHC--CCCCCccHHHHHHHHHHHHCC---CCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 4888887766 333333333344445555533 7888888888887766 6777776654
No 166
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=71.85 E-value=5.1 Score=17.61 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHcCCCCCH
Q 040628 1 CITIEELAVAIKSLDQNPTE 20 (124)
Q Consensus 1 ~l~~~el~~~l~~~~~~~~~ 20 (124)
.++..|++..|...|+.++.
T Consensus 3 sltV~~Lk~iL~~~~I~~ps 22 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFPS 22 (35)
T ss_dssp T--SHHHHHHHHHHT---SS
T ss_pred cCcHHHHHHHHHHcCCCCCC
Confidence 36778899999988876543
No 167
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=71.84 E-value=8.6 Score=19.23 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRN 25 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~ 25 (124)
|+..+|..+|+......+.+++..
T Consensus 30 it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 30 ITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp BCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHH
Confidence 456677777777666666666554
No 168
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=69.69 E-value=13 Score=20.23 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhccCC-----CCcccHHHHHHH
Q 040628 5 EELAVAIKSLDQNPTEEELRNMISEVDVNG-----NGTIEFGEFLNL 46 (124)
Q Consensus 5 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-----~g~i~~~ef~~~ 46 (124)
..++.+|+.-|+..+.+++..++..++.-+ +|.|+.+.+.++
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 346666777788899999888888876433 677888877765
No 169
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=68.91 E-value=25 Score=21.76 Aligned_cols=80 Identities=10% Similarity=0.253 Sum_probs=50.1
Q ss_pred HHHHHHHhhccCCCC--cccHHHHHHHHHHhcccc--hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHH
Q 040628 22 ELRNMISEVDVNGNG--TIEFGEFLNLMARKMKEN--EAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGE-KVTDEEL 96 (124)
Q Consensus 22 ~~~~~~~~~d~~~~g--~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~ 96 (124)
.+..+|.++-. ..| .++.+.|...+......+ ........+=..+-+...-.||..+|..++..+|+ +.-...+
T Consensus 20 ~vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~~tim~KI 98 (181)
T PF11422_consen 20 NVISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPEETIMEKI 98 (181)
T ss_dssp HHHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSGGGHHHHH
T ss_pred HHHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCchhHHHHH
Confidence 45566777755 556 899999999988776332 22233333333556666779999999999999995 3334455
Q ss_pred HHHHHh
Q 040628 97 EQMVRE 102 (124)
Q Consensus 97 ~~~~~~ 102 (124)
..++..
T Consensus 99 ~~lL~~ 104 (181)
T PF11422_consen 99 HSLLCS 104 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 170
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.67 E-value=14 Score=18.72 Aligned_cols=21 Identities=14% Similarity=0.570 Sum_probs=14.2
Q ss_pred hhcCCCCCccCHHHHHHHHHH
Q 040628 66 VFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 66 ~~D~~~~g~i~~~e~~~~l~~ 86 (124)
.||...+.+|+.+++..+.+.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 466667777777777776654
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.95 E-value=42 Score=24.04 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG-EKVTDEE 95 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~ 95 (124)
+.-+.++.+-+.+|.|.+|.|+.+|=-.++..-..-......-...|.. .+..|++++++.++.... ..++.++
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHH
Confidence 4446788888899999999999888666664433322221222223433 345799999988886543 3444443
No 172
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=67.38 E-value=7.1 Score=16.94 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHcCCC
Q 040628 2 ITIEELAVAIKSLDQN 17 (124)
Q Consensus 2 l~~~el~~~l~~~~~~ 17 (124)
++..|++..++..|+.
T Consensus 4 l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 4 LTVAELKEELKERGLS 19 (35)
T ss_dssp SHHHHHHHHHHHTTS-
T ss_pred CcHHHHHHHHHHCCCC
Confidence 5678888888888764
No 173
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=65.89 E-value=30 Score=21.55 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=21.2
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 040628 67 FDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREA 103 (124)
Q Consensus 67 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 103 (124)
+..+.+|+++.+++...+..-+..++.+++..+.+.-
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred CccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 3456778888888888887766667788887777663
No 174
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.86 E-value=4.5 Score=31.17 Aligned_cols=62 Identities=13% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMM 85 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 85 (124)
.....+|+..|...+|.|+=.+-..++... ......+..++...|..+.|+++..+|...++
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQIWSLADSSGKGFLNRQGFYAALR 72 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhccccccccccCCccccccccccch
Confidence 344445555555555555544444433221 12223344444444555555555555544444
No 175
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=64.71 E-value=24 Score=21.87 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=24.1
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 040628 68 DKDQDGYISPNELRHVMMNIGEKVTDEELEQMVRE 102 (124)
Q Consensus 68 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 102 (124)
..+.+|+++.+++...++..+..++.+.+..+...
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 44567788888887777655556777777766654
No 176
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=62.50 E-value=12 Score=16.04 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcCCC
Q 040628 2 ITIEELAVAIKSLDQN 17 (124)
Q Consensus 2 l~~~el~~~l~~~~~~ 17 (124)
++.++|++.++..|+.
T Consensus 4 l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 4 LKVSELKDELKKRGLS 19 (35)
T ss_pred CcHHHHHHHHHHcCCC
Confidence 6778888888888764
No 177
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=62.28 E-value=19 Score=22.05 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHhccc
Q 040628 38 IEFGEFLNLMARKMKE 53 (124)
Q Consensus 38 i~~~ef~~~~~~~~~~ 53 (124)
++.+||...+......
T Consensus 1 M~k~efL~~L~~~L~~ 16 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKK 16 (181)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 5788999999877653
No 178
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=62.20 E-value=42 Score=23.08 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHcCCCCCHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 10 AIKSLDQNPTEEELRNMISEVD--VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+..+.+....++++.++..+. .|....+--++|.+.+.. ........-+..+-+.+...=+|++-+.|+..-++.-
T Consensus 30 ~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~-l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~ 108 (351)
T CHL00185 30 EMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSN-LDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK 108 (351)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhh-CCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC
Confidence 3455677788889999998884 445556777788775532 2222222334445556677778888888887777542
Q ss_pred CCCCCHHHHHHHHHhhC
Q 040628 88 GEKVTDEELEQMVREAD 104 (124)
Q Consensus 88 ~~~~~~~~~~~~~~~~d 104 (124)
...+.++|..+.
T Consensus 109 -----nP~lae~F~lMa 120 (351)
T CHL00185 109 -----NPLLAEGFLLMS 120 (351)
T ss_pred -----CcHHHHHHHHHh
Confidence 234444555543
No 179
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=61.56 E-value=7.8 Score=24.10 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 040628 39 EFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQ 98 (124)
Q Consensus 39 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 98 (124)
..+-|...+ ++...-...+.++.+|..||+.+=-.++-+++..++...|..-....++.
T Consensus 37 ~Le~fQAGL-SW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 37 CLEGFQAGL-SWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred HHHHHhccc-hHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 344444444 23333334478999999999998888999999999987765444434333
No 180
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.26 E-value=31 Score=25.65 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=56.0
Q ss_pred CCCCHHHHH---HHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCC
Q 040628 16 QNPTEEELR---NMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVT 92 (124)
Q Consensus 16 ~~~~~~~~~---~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~ 92 (124)
+.+++++++ .-|..+|.++.+.++..+....+.... ..-+.+.+.+..+..|.+.+|.+...+|.++......+-+
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~ 663 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCT 663 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCCh
Confidence 344555554 456667888888899999888887655 3334466777888888888999999999999887654443
Q ss_pred H
Q 040628 93 D 93 (124)
Q Consensus 93 ~ 93 (124)
+
T Consensus 664 ~ 664 (680)
T KOG0042|consen 664 E 664 (680)
T ss_pred H
Confidence 3
No 181
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.26 E-value=29 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+++.++|.+.|+......+..+++.+
T Consensus 20 pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 20 PTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 45566666666666666666666666665
No 182
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=61.11 E-value=10 Score=14.56 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=5.0
Q ss_pred CCCCccCHHHH
Q 040628 70 DQDGYISPNEL 80 (124)
Q Consensus 70 ~~~g~i~~~e~ 80 (124)
+++|.|+.-++
T Consensus 3 N~DG~vna~D~ 13 (21)
T PF00404_consen 3 NGDGKVNAIDL 13 (21)
T ss_dssp TSSSSSSHHHH
T ss_pred CCCCcCCHHHH
Confidence 44444444443
No 183
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.63 E-value=26 Score=19.08 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHhcccch----------HHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 21 EELRNMISEVDVNGNGTIEFGEFLNLMARKMKENE----------AQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~----------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
+..+.+|..+ .|++|.++...|..++......+. .+..++..|+.-- ....|+.+.|...+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 4566677777 677899999999998866543322 3456777777652 3457888888888765
No 184
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.06 E-value=30 Score=24.48 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 040628 59 ELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFAR 118 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 118 (124)
...++|..+.+- +|+|+-..-+.-+-. ..++...+..+++..|.+.+|.++-+||.-
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 456678777764 578887666554433 357788899999999999999999999964
No 185
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=60.04 E-value=46 Score=22.95 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHcCCCCCHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 10 AIKSLDQNPTEEELRNMISEVD--VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+..+.+....++++.++..+. .|....+--++|...+.. ........-+..+-+.+...=+|++-+.|+..-++.-
T Consensus 34 ~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~-l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~ 112 (355)
T PRK13654 34 AMAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDH-LDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR 112 (355)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhh-CCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc
Confidence 3455677788889999998884 445556777778775532 2322222334445556677778888888887776542
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 040628 88 GEKVTDEELEQMVREADL 105 (124)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~ 105 (124)
...+.++|..+..
T Consensus 113 -----nP~lae~F~lMaR 125 (355)
T PRK13654 113 -----NPLLAELFQLMAR 125 (355)
T ss_pred -----CcHHHHHHHHHhh
Confidence 2345555555533
No 186
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=59.75 E-value=55 Score=22.56 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCC
Q 040628 14 LDQNPTEEELRNMISEVD--VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKV 91 (124)
Q Consensus 14 ~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 91 (124)
+.+....++++.++..+. .|....+--++|.+.... ........-+..+-+.+...=+|++-+.|+..-++..
T Consensus 34 id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~-l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~---- 108 (357)
T PLN02508 34 INKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADK-IQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT---- 108 (357)
T ss_pred CCCchhHHHHHHHHHHHHhCccccccccChhhccchhh-CCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC----
Confidence 366677788888888874 445556777777775543 2222222334445556677888999888887766542
Q ss_pred CHHHHHHHHHhhCCC
Q 040628 92 TDEELEQMVREADLD 106 (124)
Q Consensus 92 ~~~~~~~~~~~~d~~ 106 (124)
...+.++|..+..+
T Consensus 109 -nP~lae~F~lMaRD 122 (357)
T PLN02508 109 -NPVVAEIFTLMSRD 122 (357)
T ss_pred -ChHHHHHHHHhCch
Confidence 23455566555443
No 187
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=59.47 E-value=44 Score=21.33 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCC
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNIG---EKVTDEELEQMVREADLDGDG 109 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~ 109 (124)
+..++...-..+.|.|+..++...+.... ..++++++....+.+..=+.|
T Consensus 99 i~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 99 IAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp HHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred HHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 44555555555667888888888877642 357777777777777655544
No 188
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=58.88 E-value=43 Score=22.87 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=54.8
Q ss_pred HHHHcCCCCCHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 10 AIKSLDQNPTEEELRNMISEVD--VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+..+.+....++++.++..+. .|....+--++|.+.... ........-+..+-+.+...=+|++-+.|+..-++.
T Consensus 24 ~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~-l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~- 101 (337)
T TIGR02029 24 EMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEH-IDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN- 101 (337)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhh-CCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC-
Confidence 3455677788889999999884 445556666777775533 222222233444455667777888888887776644
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 040628 88 GEKVTDEELEQMVREADL 105 (124)
Q Consensus 88 ~~~~~~~~~~~~~~~~d~ 105 (124)
.+..+.++|..+..
T Consensus 102 ----~~P~lae~F~~MaR 115 (337)
T TIGR02029 102 ----RDPVVAELFQLMAR 115 (337)
T ss_pred ----CChHHHHHHHHHhh
Confidence 22345555555533
No 189
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=58.21 E-value=26 Score=24.20 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
+....-++|+.+.|.+++...+..+.....+--.+.+.-+|.... +.+|.+.+-.|.+++
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 445566889999999999988888887755555677778888875 666665555444443
No 190
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=58.11 E-value=56 Score=22.22 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=55.1
Q ss_pred HHHcCCCCCHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 11 IKSLDQNPTEEELRNMISEVD--VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
+..+.+....++++.++..+. .|....+--++|...... ........-+..+-+.+...=+|++-+.|+..-++..
T Consensus 15 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~-~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~- 92 (323)
T cd01047 15 MAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADK-IDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT- 92 (323)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhh-CCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC-
Confidence 456677788889999998884 445556777777775543 2222222334445556677778888888887776542
Q ss_pred CCCCHHHHHHHHHhhCC
Q 040628 89 EKVTDEELEQMVREADL 105 (124)
Q Consensus 89 ~~~~~~~~~~~~~~~d~ 105 (124)
.+.+.++|..+..
T Consensus 93 ----nP~lae~F~lMaR 105 (323)
T cd01047 93 ----NPVVAELFRLMAR 105 (323)
T ss_pred ----CcHHHHHHHHHhh
Confidence 2344455555433
No 191
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=57.68 E-value=34 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+++.++|.+.|.......+..+++.+
T Consensus 18 pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 18 PSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 45556666666666666666666666555
No 192
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=57.29 E-value=33 Score=19.24 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+++.++|...|.......+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 45566666666666666666666666665
No 193
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=56.91 E-value=25 Score=17.74 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCC
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNG 34 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 34 (124)
++..++.+.|..-|...+++.+....+.++.++
T Consensus 14 ~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 14 LGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 344555666655566666666666666665443
No 194
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=56.85 E-value=28 Score=18.23 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCC
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVDVNGN 35 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 35 (124)
+...+..++..+|+.-++..|+.++....-..+
T Consensus 4 ~~h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 4 TQHTLSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp T-THHHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 345788899999999999999999999874443
No 195
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=55.64 E-value=6.1 Score=20.75 Aligned_cols=43 Identities=14% Similarity=0.384 Sum_probs=28.3
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeH
Q 040628 70 DQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINY 113 (124)
Q Consensus 70 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~ 113 (124)
+.+|.=+..+|-.+|..+|..+-+..++-+++.+. ...|.+.+
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~ 78 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEF 78 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceec
Confidence 34566666678888888787666667777777764 44454443
No 196
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=55.62 E-value=8 Score=22.32 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=27.4
Q ss_pred CCCcccHHHHHHHHHHhccc-chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 040628 34 GNGTIEFGEFLNLMARKMKE-NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVRE 102 (124)
Q Consensus 34 ~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 102 (124)
.||.|+-+|...+....... .........+...++.......+ +...+..+...++.+....++..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~r~~ll~~ 102 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPID---LEELLRELRDSLSPEEREDLLRM 102 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCH---HHHHHHHHCTS--HHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHhhchHHHHHHHHH
Confidence 47888888866554433111 11112233333333332222333 44445555555555554444443
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=55.57 E-value=48 Score=21.85 Aligned_cols=88 Identities=11% Similarity=0.313 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhccCC-------------CCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcC---C
Q 040628 7 LAVAIKSLDQNPTEEELRNMISEVDVNG-------------NGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDK---D 70 (124)
Q Consensus 7 l~~~l~~~~~~~~~~~~~~~~~~~d~~~-------------~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~---~ 70 (124)
++.+|+-..+.+-.+.+..+.+.|-.+. .|.|+.++....+..-....-..++... ++.... -
T Consensus 135 i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~d-I~~ls~~~~~ 213 (293)
T COG4535 135 IKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDAD-IRQLSRHTWR 213 (293)
T ss_pred HHHhcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhh-hHhhcCCceE
Confidence 4555655555566688899998885443 3778999988777554333222222222 222211 1
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 040628 71 QDGYISPNELRHVMMNIGEKVTDEELEQ 98 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 98 (124)
-.+.-++++|...+ |.+++++++++
T Consensus 214 VrALT~IedFNe~F---~t~FsDeevDT 238 (293)
T COG4535 214 VRALTEIEDFNEAF---GTHFSDEEVDT 238 (293)
T ss_pred EEecccHHHHHHHh---cCCCChhhhhh
Confidence 11234455555554 66778888766
No 198
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=54.78 E-value=30 Score=17.95 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 040628 7 LAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 7 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
++.++..+.-.-+.+.++.-|... =+.|+..|...+-
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~~----~~~Vs~~EI~~~E 38 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKKL----FSDVSASEISAAE 38 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH----HCCCCHHHHHHHH
Confidence 345555554445555555555443 1235555544443
No 199
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=53.57 E-value=33 Score=18.08 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHhhccCC-CCcccHHHHHHH
Q 040628 15 DQNPTEEELRNMISEVDVNG-NGTIEFGEFLNL 46 (124)
Q Consensus 15 ~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~ 46 (124)
|...+.+.+...+...+.+. -+.++-+++..+
T Consensus 53 G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~ 85 (86)
T PF10437_consen 53 GCPYDREAIKEALNSVDLEDYFGNISVEELIEL 85 (86)
T ss_dssp TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHh
Confidence 56677777777777765442 345666766655
No 200
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=52.28 E-value=30 Score=17.29 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=12.6
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 63 AFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
+++.++.+...-++.++........|
T Consensus 9 v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 9 VLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 34444433344455555555555554
No 201
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=52.28 E-value=38 Score=18.39 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMAR 49 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 49 (124)
.+..+...+...+........+..+|...+..
T Consensus 34 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 34 LDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34445555555444443444555555555543
No 202
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=51.44 E-value=37 Score=18.04 Aligned_cols=40 Identities=8% Similarity=0.082 Sum_probs=26.5
Q ss_pred HHHHHc-CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 040628 9 VAIKSL-DQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMA 48 (124)
Q Consensus 9 ~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 48 (124)
++|..- |...+.+.++.+-+.++...+..|+++|++....
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455543 5567777777776666666666788888776653
No 203
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=51.17 E-value=57 Score=20.19 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=28.0
Q ss_pred hcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhhC
Q 040628 67 FDKDQDGYISPNELRHVMMNIG--EKVTDEELEQMVREAD 104 (124)
Q Consensus 67 ~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d 104 (124)
+.++...++|.++|...++... ..++.+.+..++....
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 4455556788888888887653 4788888888887764
No 204
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=50.86 E-value=37 Score=17.97 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISE 29 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~ 29 (124)
++..+++++.+.+| +++.+|+.+-..
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~~ 34 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVELD 34 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHHh
Confidence 67788899999988 677777776443
No 205
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=50.60 E-value=45 Score=18.85 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+++.++|.+.|....+..+..+++.+
T Consensus 18 pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 18 PSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 46677777777777777777777777766
No 206
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=50.42 E-value=52 Score=21.26 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 040628 11 IKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
+..+++.+++.+++.+...+..=.+-.+++.+|..-+
T Consensus 185 ~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql 221 (225)
T PF06207_consen 185 LNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQL 221 (225)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445666677666666666655555556666666554
No 207
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=50.36 E-value=45 Score=18.78 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+.+.++|.+.|....+..+..+++.+
T Consensus 17 it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 17 INEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 56677777777777777777777777766
No 208
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=49.38 E-value=48 Score=18.80 Aligned_cols=42 Identities=14% Similarity=0.359 Sum_probs=34.0
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 040628 63 AFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREAD 104 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 104 (124)
+|-..+.-++-..+..+++.+|...|.....+.++.++..+.
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 344455556667889999999999999999999999998874
No 209
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=49.14 E-value=68 Score=20.45 Aligned_cols=32 Identities=3% Similarity=0.207 Sum_probs=15.7
Q ss_pred HHHHHHHHhhccCCCCcc-cHHHHHHHHHHhcc
Q 040628 21 EELRNMISEVDVNGNGTI-EFGEFLNLMARKMK 52 (124)
Q Consensus 21 ~~~~~~~~~~d~~~~g~i-~~~ef~~~~~~~~~ 52 (124)
.++...|+.+--+.++.| +++-.+.+|...+.
T Consensus 84 ~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~ 116 (205)
T PF12238_consen 84 EKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLD 116 (205)
T ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHhc
Confidence 344455555444444555 55555555544433
No 210
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.28 E-value=21 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGE 89 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 89 (124)
+.+....++..+|++..|.|...++..+++.+..
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCC
Confidence 3466778889999999999999999999988743
No 211
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=47.22 E-value=53 Score=19.89 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcc----cchHHHHHHHHHhhhcC
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMK----ENEAQEELKEAFKVFDK 69 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~ 69 (124)
.+.....-.|..+.-..-+.++|++|..++..+.. ....++.+..+++.+..
T Consensus 54 vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~llag 109 (180)
T KOG4070|consen 54 VTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLAG 109 (180)
T ss_pred ccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhc
Confidence 33444555555554445567899999887755432 23444556666665543
No 212
>PHA02105 hypothetical protein
Probab=46.32 E-value=38 Score=16.73 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCC--CCcccHHHHHHHH
Q 040628 1 CITIEELAVAIKSLD---QNPTEEELRNMISEVDVNG--NGTIEFGEFLNLM 47 (124)
Q Consensus 1 ~l~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~ 47 (124)
++++.|++.++.+-. .....+.++.+=..|.... .-.++|+||..++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 467777777776642 2233344444444444332 2245777776655
No 213
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=45.79 E-value=1.2e+02 Score=22.34 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHh---hcc-----CCCCcccHHHHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISE---VDV-----NGNGTIEFGEFLNLM 47 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~g~i~~~ef~~~~ 47 (124)
++.-.|-.+|++.|+..+.-.+..++.. .++ ...+.++.+.|...+
T Consensus 103 ipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 103 IPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred ccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 5667788999999998766555555444 343 234678999998776
No 214
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.82 E-value=1.1e+02 Score=21.80 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchH---HHHHHHHHhhhcCCCCCccCHHH
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEA---QEELKEAFKVFDKDQDGYISPNE 79 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---~~~~~~~f~~~D~~~~g~i~~~e 79 (124)
+-++..++|.-+.+ .+.++++.+++..-++..-.+-...+..-+......... .+....+..--.+...+.++..+
T Consensus 302 pDd~v~k~LklfTf-l~l~eI~~I~~~H~k~P~~r~aQ~~LA~eVTr~VHG~egL~~A~r~T~al~g~~~~~~~~ls~~e 380 (467)
T KOG2623|consen 302 PDDDVEKFLKLFTF-LPLEEIKQILEEHRKEPSQRIAQKLLAAEVTRMVHGKEGLEVAERCTKALFGAKKAGLSGLSLSE 380 (467)
T ss_pred chhHHHHHHHHHhc-CCHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHcccchHHHHHHHHHHhhcccccccccCCHHH
Confidence 34455566655543 666778888877777765555555554444333332222 22333344334455777888888
Q ss_pred HHHHHHH
Q 040628 80 LRHVMMN 86 (124)
Q Consensus 80 ~~~~l~~ 86 (124)
+.++++.
T Consensus 381 i~~lfk~ 387 (467)
T KOG2623|consen 381 ILQLFKD 387 (467)
T ss_pred HHHHHhc
Confidence 8888874
No 215
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=44.80 E-value=51 Score=17.78 Aligned_cols=50 Identities=10% Similarity=0.184 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 37 TIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 37 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
.+|-+|+..... ....+-.......+...+-.+.-...+-++-..++..+
T Consensus 14 ~iT~~eLlkysk-qy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 14 NITAKELLKYSK-QYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred cCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 355555555542 22322222333344444333333344444444444444
No 216
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.16 E-value=36 Score=24.09 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=13.0
Q ss_pred HHHHHhhhcCCCCCccCHHHHHH
Q 040628 60 LKEAFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~ 82 (124)
+-.+|...|.+++|.++-+||.-
T Consensus 479 lgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 479 LGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred HHhhhhhhcCCcccCcCHHHHHH
Confidence 44555555666666666655543
No 217
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=43.01 E-value=31 Score=19.14 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=8.6
Q ss_pred ccCHHHHHHHHHHh
Q 040628 74 YISPNELRHVMMNI 87 (124)
Q Consensus 74 ~i~~~e~~~~l~~~ 87 (124)
.++.+++..++...
T Consensus 71 ~~s~~e~~~~l~~~ 84 (105)
T cd03035 71 ALDAAKAIALMLEH 84 (105)
T ss_pred cCCHHHHHHHHHhC
Confidence 46666666666554
No 218
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=42.89 E-value=55 Score=17.60 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+..++..+-+-..+.++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56778888777778888888888877655
No 219
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.26 E-value=1e+02 Score=20.50 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 50 (124)
-.+-+..+++.+|+.+....+..+...++...-+..+.++|...+...
T Consensus 83 ~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 83 GPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred ChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 345677888899998888888888888887778899999999877543
No 220
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=41.92 E-value=56 Score=17.40 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccc
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKEN 54 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 54 (124)
+++.+...+-.-++.-..|.|+-+.|+..+......+
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt~ 52 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELLNTH 52 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccH
Confidence 5566666666666556667777777777776554433
No 221
>PRK09389 (R)-citramalate synthase; Provisional
Probab=41.71 E-value=1.2e+02 Score=22.19 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHh
Q 040628 6 ELAVAIKSLDQNPTEEELRNMISEVDV--NGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 6 el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~ 50 (124)
-+...++.+|+.+++.++..++..+.. +..+.++-+|+..++...
T Consensus 322 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~ 368 (488)
T PRK09389 322 ALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDV 368 (488)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 466778889999888888888887754 344578888888777544
No 222
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=40.90 E-value=8.1 Score=16.30 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=10.8
Q ss_pred HHHHhhCCCCCCceeHH
Q 040628 98 QMVREADLDGDGQINYE 114 (124)
Q Consensus 98 ~~~~~~d~~~~~~i~~~ 114 (124)
.+++.=|.+++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 45566667777776654
No 223
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.81 E-value=46 Score=25.71 Aligned_cols=92 Identities=7% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhhccCC-CCcccHHHHHHHHHHhcc-------c----c-hHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNG-NGTIEFGEFLNLMARKMK-------E----N-EAQEELKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~~~~~~~-------~----~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
.+......+|...+-.+ +..++..+.+..+.-.+. . + .-.-.+...++.||+..+|.|..-+|+..+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 34455666777665553 334555554444421111 0 0 011235677899999999999999999888
Q ss_pred HHhCCCCCHHHHHHHHHhhCCCCCC
Q 040628 85 MNIGEKVTDEELEQMVREADLDGDG 109 (124)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (124)
..+.....++.+..+|+.....+.-
T Consensus 497 i~lck~~leek~~ylF~~vA~~~sq 521 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTSQ 521 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchhh
Confidence 7776666677778899988655543
No 224
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=40.19 E-value=1.3e+02 Score=21.06 Aligned_cols=92 Identities=10% Similarity=0.170 Sum_probs=55.5
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-----------CCCC
Q 040628 24 RNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG-----------EKVT 92 (124)
Q Consensus 24 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-----------~~~~ 92 (124)
..++..+|..+.|.++.-.....+. ........+.++.+|..... ++|.+..-.+-+++.... .+.+
T Consensus 113 aflLaA~ds~~~g~~~vfavkiala-tlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlslpT~v~e~psfg~t 190 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALA-TLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYT 190 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhh-hhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcCCchhhcCCCcchH
Confidence 3345556777777776665555543 23334455788889998865 468888777777776642 1233
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 93 DEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 93 ~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+-.++..|- ...++++..|.+.++.
T Consensus 191 e~~a~~cf~-----qqrKv~Ln~fldtl~s 215 (434)
T KOG4301|consen 191 ELSARLCFL-----QQRKVELNQFLDTLMS 215 (434)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 333333333 2346777788777664
No 225
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=39.61 E-value=73 Score=18.06 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNL 46 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 46 (124)
|+-+.+..+++..|+...+.++..+...+ .| ++.+|.+.-
T Consensus 17 i~e~~l~~vl~aaGveve~~r~k~lvaaL----eg-~~idE~i~~ 56 (109)
T COG2058 17 ITEDNLKSVLEAAGVEVEEARAKALVAAL----EG-VDIDEVIKN 56 (109)
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHh----cC-CCHHHHHHH
Confidence 56778888888888888888888888877 23 366665544
No 226
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=39.00 E-value=58 Score=16.76 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+..||...|...|+..+...+-+-++.+
T Consensus 21 sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 21 SQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 4456777777777777776666655554
No 227
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.60 E-value=63 Score=17.07 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 040628 2 ITIEELAVAIKSLDQNPT 19 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~ 19 (124)
||+...+++++.+|++-+
T Consensus 9 VP~~~wk~F~R~LGLsdn 26 (77)
T cd08815 9 VPARRWKEFVRTLGLREA 26 (77)
T ss_pred CChHHHHHHHHHcCCcHh
Confidence 688889999999985443
No 228
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=38.31 E-value=46 Score=15.40 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 040628 76 SPNELRHVMMNIGEKVTDEEL 96 (124)
Q Consensus 76 ~~~e~~~~l~~~~~~~~~~~~ 96 (124)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667788888888888887764
No 229
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.12 E-value=89 Score=18.62 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=23.5
Q ss_pred HHHhCCCCCHHHHHHHHH----------hhCCCCCCceeHHHHHHHh
Q 040628 84 MMNIGEKVTDEELEQMVR----------EADLDGDGQINYEEFARMM 120 (124)
Q Consensus 84 l~~~~~~~~~~~~~~~~~----------~~d~~~~~~i~~~ef~~~l 120 (124)
...+|...+++++..++. .+-.+..|..+...|..++
T Consensus 99 ~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 99 FEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 345566677777666661 1234578888888877654
No 230
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=37.89 E-value=1.5e+02 Score=22.33 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=36.8
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMN-IGEKVTDEELEQMVREA 103 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~ 103 (124)
..+.++|...|.+.+|.++-.|+..+-.. ++.++...+++.+-...
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV 241 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999888665 46788887766655544
No 231
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.67 E-value=27 Score=21.68 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVR 101 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 101 (124)
..+.++.+|..+|+..=-..+-+++..++...+.--....+..++.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 3477899999999988778888888888877665444444444433
No 232
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=37.49 E-value=77 Score=17.70 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|.+++.+++.+.|+.........+.+.+
T Consensus 18 ~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 18 ITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 45566666666666666666666555555
No 233
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=37.30 E-value=96 Score=18.76 Aligned_cols=72 Identities=19% Similarity=0.425 Sum_probs=35.8
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHH
Q 040628 23 LRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI-----GEKVTDEELE 97 (124)
Q Consensus 23 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~ 97 (124)
+..+...-+.+.++.|++..|...+..... +.+..-|-. +...++.+++..++..+ ......+..+
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~Lk----h~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye 155 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFLK----HPNRMSKDQIKTLCEQIIEMAKAESSDTEHYE 155 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHHh----ccchhhHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 333333323334566888888777753322 233333332 22356777776666543 2334445555
Q ss_pred HHHHhh
Q 040628 98 QMVREA 103 (124)
Q Consensus 98 ~~~~~~ 103 (124)
.+++.+
T Consensus 156 ~vwkKm 161 (175)
T PF04876_consen 156 KVWKKM 161 (175)
T ss_pred HHHHHh
Confidence 555543
No 234
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=36.93 E-value=71 Score=17.17 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+..++..+.+-..+.+++++...+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 67788888888778888888877766554
No 235
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=36.85 E-value=43 Score=14.65 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=15.3
Q ss_pred CHHHHHHHHHhhCCCCCCce-eHHHHHHHhc
Q 040628 92 TDEELEQMVREADLDGDGQI-NYEEFARMML 121 (124)
Q Consensus 92 ~~~~~~~~~~~~d~~~~~~i-~~~ef~~~l~ 121 (124)
+.++++..+..++....... +.++++..+.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 44555555555544433333 5666655544
No 236
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=36.72 E-value=79 Score=17.63 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
++..|+...+..++..++..++..+|..+
T Consensus 6 lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 6 LTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred hhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 46778889999998888888888888776
No 237
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=36.34 E-value=66 Score=16.66 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 37 TIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 37 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
..+|++|...+...+..+.....+..-+..+-. + .-++.++..-+..
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~--~esv~~y~~rf~~ 72 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-G--NESVREYVNRFRE 72 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhhhc-c--CCcHHHHHHHHHH
Confidence 569999999998877765544444444444444 3 3444555554443
No 238
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=36.34 E-value=73 Score=17.11 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISE 29 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~ 29 (124)
|++.||...+..-...++..++..++..
T Consensus 1 mtk~eli~~ia~~~~~~s~~~~~~vv~~ 28 (94)
T PRK00199 1 MTKSELIERLAARNPHLSAKDVENAVKE 28 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677777777653333566555555544
No 239
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=35.55 E-value=1.1e+02 Score=18.96 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=28.3
Q ss_pred hcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhhC
Q 040628 67 FDKDQDGYISPNELRHVMMNIG--EKVTDEELEQMVREAD 104 (124)
Q Consensus 67 ~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d 104 (124)
+.++...++|.++|...++..+ ..++.+.+..++....
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred cCCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 3445556789888888888763 6788888888887764
No 240
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=35.45 E-value=87 Score=17.72 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=6.3
Q ss_pred CCCccCHHHHHHHHH
Q 040628 71 QDGYISPNELRHVMM 85 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~ 85 (124)
..|.|+......+++
T Consensus 82 r~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 82 REGKIPLSVPLTLLK 96 (117)
T ss_pred HcCCccHHHHHHHHH
Confidence 344444444444443
No 241
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.41 E-value=43 Score=14.22 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=9.3
Q ss_pred CCcccHHHHHHHHHH
Q 040628 35 NGTIEFGEFLNLMAR 49 (124)
Q Consensus 35 ~g~i~~~ef~~~~~~ 49 (124)
.|.|+++++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 456777777666543
No 242
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=34.71 E-value=1.1e+02 Score=18.71 Aligned_cols=35 Identities=6% Similarity=0.136 Sum_probs=21.1
Q ss_pred CCCccCHHHHHHHHHHhCCCCCH-HHHHHHHHhhCC
Q 040628 71 QDGYISPNELRHVMMNIGEKVTD-EELEQMVREADL 105 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~ 105 (124)
+...|+..++..+++..|..-.. ......|+...|
T Consensus 112 ~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p 147 (172)
T cd04790 112 EQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEP 147 (172)
T ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCc
Confidence 44568888888888887732222 445555555444
No 243
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=34.55 E-value=1.7e+02 Score=20.94 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..+..+-..+|+..-.+ ...|-|..|.+.+.......... +...+=..+|-..+++|+.-||-.+-+-+
T Consensus 171 riTKadA~~FWr~~fg~-k~ivPW~~F~q~L~~~Hpi~~gl-eAmaLktTIDLtcnd~iS~FEFDvFTRLF 239 (563)
T KOG1785|consen 171 RITKADAAEFWRKHFGK-KTIVPWKTFRQALHKVHPISSGL-EAMALKTTIDLTCNDFISNFEFDVFTRLF 239 (563)
T ss_pred eeccccHHHHHHHhcCC-cccccHHHHHHHHHhcCCCcchh-HHHHhhceeccccccceeeehhhhHHHhh
Confidence 35667788888876433 45789999999997765554442 22334457888999999998887776654
No 244
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=34.43 E-value=1.4e+02 Score=22.02 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhccC--CCCcccHHHHHHHHH
Q 040628 7 LAVAIKSLDQNPTEEELRNMISEVDVN--GNGTIEFGEFLNLMA 48 (124)
Q Consensus 7 l~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~ 48 (124)
+...++.+|+..++.++..++..+..- ..+.|+-+|+..++.
T Consensus 432 v~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~ 475 (503)
T PLN03228 432 VKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVV 475 (503)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 455566667766666666666554321 124566666666654
No 245
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=34.34 E-value=70 Score=16.34 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 040628 59 ELKEAFKVFDKDQDGYISPNELRHVMMNI----GEKVTDEELEQMVREA 103 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 103 (124)
.+..+...++...+--+-..+++.++..+ |...+++-++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34445555544333334455566655543 5666777788887654
No 246
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=34.27 E-value=86 Score=17.30 Aligned_cols=77 Identities=5% Similarity=0.106 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELR 81 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 81 (124)
|+..+++++.+.+| +++.+++.+-.....+ ..+.-.+++..+.. .....=+...+.
T Consensus 18 ~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~Eq~~qmL~~W~~-----------------~~G~~a~~~~Li 73 (97)
T cd08316 18 MTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TAEQKVQLLRAWYQ-----------------SHGKTGAYRTLI 73 (97)
T ss_pred cCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hHHHHHHHHHHHHH-----------------HhCCCchHHHHH
Confidence 45667777777777 5666666655443222 24444444433311 111122346677
Q ss_pred HHHHHhCCCCCHHHHHHHHHh
Q 040628 82 HVMMNIGEKVTDEELEQMVRE 102 (124)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~ 102 (124)
..|+..+.....+.+..+++.
T Consensus 74 ~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 74 KTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHccchhHHHHHHHHHHh
Confidence 778877766666666666543
No 247
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=34.23 E-value=79 Score=16.92 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISE 29 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~ 29 (124)
|++.||.+.+..-...++..++..++..
T Consensus 1 m~k~eli~~i~~~~~~~s~~~v~~vv~~ 28 (94)
T TIGR00988 1 MTKSELIERIATQQSHLPAKDVEDAVKT 28 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677777777654333566555554443
No 248
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=73 Score=22.47 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHH
Q 040628 19 TEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELR 81 (124)
Q Consensus 19 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 81 (124)
+.+++++.|+..|+.+.|.|+-+-+..++......-...+.+.-.=+.+|+..-|.|-..++.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 457899999999999999999998888876443222222444444446677777766655543
No 249
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=33.83 E-value=30 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=14.9
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHH
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVM 84 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l 84 (124)
+...|...|.+++|.|+.+|+...+
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 3455666666666666666655444
No 250
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=33.03 E-value=85 Score=16.87 Aligned_cols=47 Identities=6% Similarity=0.183 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHcCC-CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQ-NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 2 l~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 50 (124)
++..++.+++..+.. .+....+..+-...... +.++-.+...++...
T Consensus 5 m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~--~~~T~~Qv~~il~~f 52 (95)
T PF14771_consen 5 MSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTN--NCFTCAQVKQILSLF 52 (95)
T ss_pred CCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcC--CceeHHHHHHHHHHc
Confidence 455566666666533 34444444443333221 157777777766443
No 251
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.40 E-value=40 Score=18.69 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=6.2
Q ss_pred ccCHHHHHHHHHH
Q 040628 74 YISPNELRHVMMN 86 (124)
Q Consensus 74 ~i~~~e~~~~l~~ 86 (124)
.++.+++..++..
T Consensus 70 ~~s~~e~i~~l~~ 82 (110)
T PF03960_consen 70 DLSDEELIELLLE 82 (110)
T ss_dssp TSBHHHHHHHHHH
T ss_pred hhhhHHHHHHHHh
Confidence 3455555554443
No 252
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=32.35 E-value=1.1e+02 Score=18.04 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 7 LAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 7 l~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+.++|..+|+ |+..+++.+-.++
T Consensus 96 V~~aL~rLgv-Ps~~dv~~L~~rI 118 (132)
T PF05597_consen 96 VARALNRLGV-PSRKDVEALSARI 118 (132)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHH
Confidence 5666777776 5666777666655
No 253
>PRK08181 transposase; Validated
Probab=32.21 E-value=1.5e+02 Score=19.64 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 50 (124)
|+...+...|+.+++..-...+..+.... ..+.+++.+|...+...
T Consensus 7 ~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~ 52 (269)
T PRK08181 7 IDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAEH 52 (269)
T ss_pred ccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHHH
Confidence 45567888889888765445555544432 34568999999988553
No 254
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=32.18 E-value=65 Score=15.31 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=19.1
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 040628 72 DGYISPNELRHVMMNIGEKVTDEELEQMVREADL 105 (124)
Q Consensus 72 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 105 (124)
+|.++..+|+..+. ++....-.+++.+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 57788888888873 355555566666654
No 255
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=32.01 E-value=1.1e+02 Score=17.92 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=3.1
Q ss_pred ccHHHH
Q 040628 38 IEFGEF 43 (124)
Q Consensus 38 i~~~ef 43 (124)
|+|.|-
T Consensus 99 v~FDeA 104 (128)
T PF09435_consen 99 VNFDEA 104 (128)
T ss_pred CCHHHH
Confidence 555553
No 256
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.95 E-value=30 Score=20.37 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhcC
Q 040628 72 DGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMMLL 122 (124)
Q Consensus 72 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 122 (124)
+|.|.....+.+..-. ...+...+..++. .+..|+.+|++|++.+..
T Consensus 54 ~~~Il~~g~k~~~~V~-~~~n~~~i~~al~---~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVVGVA-EVFNTTLIKTALR---RHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeecccccccee-cccCHHHHHHHHH---HHhcCCccHHHHHHHHHh
Confidence 3445544444333221 1233444444444 467888999999987653
No 257
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=31.84 E-value=1.1e+02 Score=17.79 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNI-GEKVTDEELEQMVR 101 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~ 101 (124)
..+.+..+++.+-. +.|+.+.+..++... |..++..+++-+..
T Consensus 35 f~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~ 78 (122)
T PF06648_consen 35 FLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYN 78 (122)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHH
Confidence 33444455554432 235555555555544 23455444444333
No 258
>PRK10026 arsenate reductase; Provisional
Probab=31.76 E-value=98 Score=18.38 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=5.9
Q ss_pred cCHHHHHHHHHH
Q 040628 75 ISPNELRHVMMN 86 (124)
Q Consensus 75 i~~~e~~~~l~~ 86 (124)
++.+++..++..
T Consensus 76 ls~~e~l~ll~~ 87 (141)
T PRK10026 76 FTDDQLIDFMLQ 87 (141)
T ss_pred CCHHHHHHHHHh
Confidence 455555555443
No 259
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=31.67 E-value=1.1e+02 Score=21.18 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=31.7
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 67 FDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 67 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
-|.|+.-++--++|...+..+....-..-++-+-.++..+=+|.+-|.|+..-+.
T Consensus 52 ~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk 106 (357)
T PLN02508 52 TDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLK 106 (357)
T ss_pred hCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcc
Confidence 3666666666666666554432222222344455556667778888888776653
No 260
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=31.35 E-value=1e+02 Score=17.40 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 040628 76 SPNELRHVMMNIGEKVTDEELEQMVRE 102 (124)
Q Consensus 76 ~~~e~~~~l~~~~~~~~~~~~~~~~~~ 102 (124)
+.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344555555554444555555555543
No 261
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=31.32 E-value=2e+02 Score=20.66 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC---ccCHH
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDG---YISPN 78 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g---~i~~~ 78 (124)
++-..|+++|.......+--+-..+=..+|-..++.|+--||-.+-.... +...+..-|+.+..-..| +++++
T Consensus 191 vPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq----Pw~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 191 VPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ----PWKTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred ccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc----cHHHHHHhhhhhhccCCceeEEeeHH
Confidence 34567788887764433334444555567778888898888776654331 123344445555556666 47899
Q ss_pred HHHHHHHHh
Q 040628 79 ELRHVMMNI 87 (124)
Q Consensus 79 e~~~~l~~~ 87 (124)
|++.-|...
T Consensus 267 EVk~RLqk~ 275 (563)
T KOG1785|consen 267 EVKARLQKY 275 (563)
T ss_pred HHHHHHHHH
Confidence 999888664
No 262
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=31.17 E-value=1.8e+02 Score=19.96 Aligned_cols=60 Identities=5% Similarity=0.059 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCCC---ccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCCCCCceeHHHHHHHhc
Q 040628 59 ELKEAFKVFDKDQDG---YISPNELRHVMMNIGE--KVTDEELEQMVREADLDGDGQINYEEFARMML 121 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g---~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 121 (124)
.+..++..+++.++| .++..++..++..+.. .--...+..+.++|...++ +|+.+.+.|.
T Consensus 228 ~i~~m~~sl~~~g~g~~~~~~~A~YQAWqAgFdaq~~~iqsn~Qtl~qKYSqANS---tFDNLVKVLS 292 (308)
T TIGR02553 228 PLIKMRDDLPPLGTGTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQKYSNANS---LFDNLVKVLS 292 (308)
T ss_pred HHHHHHHhcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHH
Confidence 445556666554443 3666666666655421 1112235556666665555 5666666654
No 263
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.00 E-value=1.5e+02 Score=21.50 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=39.0
Q ss_pred CCCCcccHHHHHHHHHHhcc---cchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 33 NGNGTIEFGEFLNLMARKMK---ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 33 ~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
.++...+..||+.+..-... ..-.-+.++.+-+.+|-+.+|.|+.+|--.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 45567788888765432111 1223467899999999999999999998888875
No 264
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=30.55 E-value=1.3e+02 Score=18.15 Aligned_cols=30 Identities=17% Similarity=0.490 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
+.+..-....|..+.++||++++++++-.+
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 566677778899998899999999988654
No 265
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=30.26 E-value=77 Score=19.89 Aligned_cols=45 Identities=11% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 040628 56 AQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMV 100 (124)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 100 (124)
..+.++.+|..+|+..=-.++-+++..++...+.--....++.++
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 347789999999998777788888888887655433444444433
No 266
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=30.12 E-value=97 Score=16.67 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCC
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEK 90 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 90 (124)
.++..-+..+.+.-....=..--|++....+..... +.++.+.....-.+--.|+.+++.-+++..|.+
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~-----~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLE-----DVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 367778888888765443222337777776644322 233333333333344469999999888887754
No 267
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.99 E-value=1.5e+02 Score=18.75 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=11.2
Q ss_pred HhhhcCCCCCccCHHHHHHHHH
Q 040628 64 FKVFDKDQDGYISPNELRHVMM 85 (124)
Q Consensus 64 f~~~D~~~~g~i~~~e~~~~l~ 85 (124)
-+.+..|+.|.|+...+..+.+
T Consensus 125 ~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 125 NRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred HHHHhcCCCCCcCHHHHHHHHh
Confidence 3344555556666555544443
No 268
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=29.94 E-value=81 Score=15.70 Aligned_cols=11 Identities=0% Similarity=0.202 Sum_probs=5.0
Q ss_pred cccHHHHHHHH
Q 040628 37 TIEFGEFLNLM 47 (124)
Q Consensus 37 ~i~~~ef~~~~ 47 (124)
.++-.....++
T Consensus 44 ~~~~~~l~~~l 54 (64)
T PF09494_consen 44 KVDPSKLKEWL 54 (64)
T ss_pred eeCHHHHHHHH
Confidence 44444444444
No 269
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=29.26 E-value=77 Score=15.25 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=16.9
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 040628 71 QDGYISPNELRHVMMNIGEKVTDEELEQMV 100 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 100 (124)
..|.|+.+||..-+.....-.+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346777777776665544444444544443
No 270
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=29.17 E-value=62 Score=16.04 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHhhhcCCCCCccCHHHHHH
Q 040628 63 AFKVFDKDQDGYISPNELRH 82 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~ 82 (124)
+...++.+.+|+|+...+..
T Consensus 20 L~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHHhcCCCcEeHHHHHc
Confidence 44455666677777665543
No 271
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=29.14 E-value=83 Score=15.59 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHH
Q 040628 3 TIEELAVAIKSLDQNPTEEELRN 25 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~ 25 (124)
+..++..+.+..|+.++..++..
T Consensus 26 ~~e~~~~lA~~~Gf~ft~~el~~ 48 (64)
T TIGR03798 26 DPEDRVAIAKEAGFEFTGEDLKE 48 (64)
T ss_pred CHHHHHHHHHHcCCCCCHHHHHH
Confidence 45566666666666666666654
No 272
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=29.13 E-value=69 Score=14.67 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=13.4
Q ss_pred HHHHHhhhcC--CCCCccCHHHHHHHHHH
Q 040628 60 LKEAFKVFDK--DQDGYISPNELRHVMMN 86 (124)
Q Consensus 60 ~~~~f~~~D~--~~~g~i~~~e~~~~l~~ 86 (124)
+..+|..|.. .....++..||+.++..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4445555531 12335666666666554
No 273
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=28.81 E-value=1e+02 Score=16.39 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.7
Q ss_pred HHHHHHHHhCCCCCHHHHHH
Q 040628 79 ELRHVMMNIGEKVTDEELEQ 98 (124)
Q Consensus 79 e~~~~l~~~~~~~~~~~~~~ 98 (124)
|+..+|+.+|..+++++..-
T Consensus 21 EIL~ALrkLge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 45567788888888877543
No 274
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.71 E-value=73 Score=14.80 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=19.2
Q ss_pred CCccC-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 040628 72 DGYIS-PNELRHVMMNIGEKVTDEELEQMVREA 103 (124)
Q Consensus 72 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 103 (124)
.|.|+ ..++...+...|..++++.++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 35555 444444455556777777777776653
No 275
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=28.65 E-value=2.5e+02 Score=20.86 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhc
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKM 51 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 51 (124)
|+..++..++.++|......+=-..|..-+...+ -++|.++........
T Consensus 502 lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel 550 (612)
T COG5069 502 LSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSEL 550 (612)
T ss_pred CCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhh
Confidence 4556666666666655443333333322211111 255666655554433
No 276
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=28.58 E-value=1.4e+02 Score=17.83 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVD 31 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d 31 (124)
|..|+.+.|+..|...+...+-+.++.+.
T Consensus 18 tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 18 TQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred CHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 56778888887888888877777777664
No 277
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.39 E-value=1.3e+02 Score=17.58 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHhhhcCCC----CCccCHHHHHHHHHHhCCCCCHHHHHHHHHh----hCCCCCCc
Q 040628 63 AFKVFDKDQ----DGYISPNELRHVMMNIGEKVTDEELEQMVRE----ADLDGDGQ 110 (124)
Q Consensus 63 ~f~~~D~~~----~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~d~~~~~~ 110 (124)
.-+.-+... .|.||.+|-.++|..- .+++.+++..-|+. -|+...|.
T Consensus 40 a~k~g~~~~~~~~~~~iTlqEa~qILnV~-~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 40 AGKSGTRSAEANSNGKITLQEAQQILNVK-EPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhhcCcccccccccccccHHHHhhHhCCC-CCCCHHHHHHHHHHHHhccCcccCcc
Confidence 334444444 4779999999998653 36777776665444 35554454
No 278
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=27.14 E-value=1.2e+02 Score=16.97 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|...+..+|.+.|+......+..+...+
T Consensus 17 iT~e~I~~IL~AAGv~ve~~~~~~la~~L 45 (105)
T TIGR03685 17 INEENLKAVLEAAGVEVDEARVKALVAAL 45 (105)
T ss_pred CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 45666777777777766666676666666
No 279
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=26.86 E-value=83 Score=16.29 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=11.1
Q ss_pred HHhhhcCCCCCccCHHHHHHHHH
Q 040628 63 AFKVFDKDQDGYISPNELRHVMM 85 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~ 85 (124)
+...-+...++.|+.+.+..++.
T Consensus 44 ~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 44 AEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp HHHHHHTT-SSEE-HHHHHHHCH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHH
Confidence 33343443333488877776653
No 280
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=1.5e+02 Score=17.81 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
..+..++..++.....-+.-.+++..|-..+..........+.+..+++..- .+|.++..|-..+++.
T Consensus 62 ~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 62 GIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--ccccccHHHHHHHHHH
Confidence 3566666666666655555567777777777655544444455566666542 3456666666666554
No 281
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=26.76 E-value=1.5e+02 Score=17.70 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhhccC
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEVDVN 33 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 33 (124)
|++++..+.......++..++..++..++.-
T Consensus 28 T~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 28 TREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 5667777766566677888888888888654
No 282
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=26.72 E-value=1.3e+02 Score=17.00 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
+|...+..+|...|+......+..+...+
T Consensus 17 ITae~I~~IL~AAGveVd~~~~~ala~aL 45 (106)
T cd05832 17 INEENLKKVLEAAGIEVDEARVKALVAAL 45 (106)
T ss_pred CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 45666666777766666666666666666
No 283
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=26.47 E-value=99 Score=15.59 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHcCCCC--CH--HHHHHHHHhhcc-CCCCcccHHHHHHHHHHh
Q 040628 3 TIEELAVAIKSLDQNP--TE--EELRNMISEVDV-NGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~--~~--~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 50 (124)
|.-++.++|+..|... .. .+++-+-..++. -..|.|+.++|..+....
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~~~lidk~~y~~A~liL 55 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYKSGLIDKKEYLTAKLIL 55 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567888899888642 21 222222222211 135789999998887543
No 284
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=26.33 E-value=1.7e+02 Score=18.17 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=4.3
Q ss_pred ceeHHHHHHHh
Q 040628 110 QINYEEFARMM 120 (124)
Q Consensus 110 ~i~~~ef~~~l 120 (124)
+++.++|+.-+
T Consensus 154 kmt~~~Fi~~~ 164 (190)
T PF01369_consen 154 KMTKEDFIKNT 164 (190)
T ss_dssp S--HHHHHHHT
T ss_pred CCcHHHHHHHh
Confidence 44555554443
No 285
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=25.84 E-value=1.4e+02 Score=18.63 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=15.2
Q ss_pred CCCccCHHHHHHHHHHhC
Q 040628 71 QDGYISPNELRHVMMNIG 88 (124)
Q Consensus 71 ~~g~i~~~e~~~~l~~~~ 88 (124)
..|.++..+..+++....
T Consensus 114 PkGkltl~qal~lL~~Hq 131 (179)
T PF06784_consen 114 PKGKLTLRQALELLNNHQ 131 (179)
T ss_pred CCCceeHHHHHHHHHHhc
Confidence 679999999999998764
No 286
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.82 E-value=1.3e+02 Score=17.02 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=13.7
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 62 EAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 62 ~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..|+....+. ..++.++...++...
T Consensus 60 ~~~r~~~~~~-~~ls~~e~~~ll~~~ 84 (113)
T cd03033 60 PRVKSGEVVP-EALDEEEALALMIAD 84 (113)
T ss_pred HHHHhcCCCc-cCCCHHHHHHHHHhC
Confidence 3444443332 346777777776554
No 287
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=25.79 E-value=1.4e+02 Score=17.05 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhh----ccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHH
Q 040628 19 TEEELRNMISEV----DVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDE 94 (124)
Q Consensus 19 ~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 94 (124)
.+.....+++-. -..+...++.+.-+.+....+..... ..+..-++.+.......||.+....++....
T Consensus 18 d~~~F~~~Y~f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~-~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------ 90 (117)
T PF03556_consen 18 DPEYFKKFYRFTFDFAREEGQRSLPLETAIAYWRLLFSGRFF-PLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------ 90 (117)
T ss_dssp SHHHHHHHHHHHHHHHS-TT-SSEEHHHHHHHHHHHTTTTSS-CCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------
Confidence 345555544432 23345668888878777666543311 3344455555555666799888888775532
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 95 ELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 95 ~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
.++.-+..+|.++.-.+-+++|+.++
T Consensus 91 ~~~~dls~Yde~~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 91 TVDEDLSNYDEEGAWPSLIDEFVEWL 116 (117)
T ss_dssp H-HCCHCC--TTSSS-HHHHHHHHHH
T ss_pred hcCccccCCCCCCCCcHHHHHHHHHh
Confidence 12345666777777888999998876
No 288
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=25.73 E-value=71 Score=15.91 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHcCCCCCHHHHHHHHHhhc
Q 040628 12 KSLDQNPTEEELRNMISEVD 31 (124)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~d 31 (124)
+-+|...+..++..++..+.
T Consensus 13 ~llG~~i~~~ei~~~L~~lg 32 (71)
T smart00874 13 RLLGLDLSAEEIEEILKRLG 32 (71)
T ss_pred HHHCCCCCHHHHHHHHHHCC
Confidence 34567788888888888775
No 289
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.56 E-value=1.2e+02 Score=17.59 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=23.5
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhC---------------CCCCHHHHHHHHHhhC
Q 040628 63 AFKVFDKDQDGYISPNELRHVMMNIG---------------EKVTDEELEQMVREAD 104 (124)
Q Consensus 63 ~f~~~D~~~~g~i~~~e~~~~l~~~~---------------~~~~~~~~~~~~~~~d 104 (124)
.|+..+.+. ..++.+++..++.... .+.+.+.+..++....
T Consensus 62 ~~r~l~~~~-~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~e~~~~~l~~~~ 117 (126)
T TIGR01616 62 RVKSGEVNP-DSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDREPVLSWIGLQT 117 (126)
T ss_pred HhhhCCCCc-ccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCHHHHHHHhCCCC
Confidence 555555333 3577777777776531 2456666666665543
No 290
>COG1438 ArgR Arginine repressor [Transcription]
Probab=25.56 E-value=1.3e+02 Score=18.22 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 3 TIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 3 ~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|..|+.+.|+..|+..++..+-+-++.+
T Consensus 22 TQ~Elv~~L~~~Gi~vTQaTvSRDlkel 49 (150)
T COG1438 22 TQEELVELLQEEGIEVTQATVSRDLKEL 49 (150)
T ss_pred CHHHHHHHHHHcCCeEehHHHHHHHHHc
Confidence 4567777777777777777666666665
No 291
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=25.27 E-value=1.2e+02 Score=16.33 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNLMARK 50 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 50 (124)
++=.+|++.|+.........+...+=..+|-.+++.|+.=||-.+.+..
T Consensus 23 VPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 23 VPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp EEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3456888888886444444666777778899999999999998887543
No 292
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=24.78 E-value=2e+02 Score=18.53 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=29.7
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 040628 68 DKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREA 103 (124)
Q Consensus 68 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 103 (124)
-.+..|+.+.+++...++.-+..++.+.+..+.+.-
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d 88 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATD 88 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcC
Confidence 456789999999999999988899998877776653
No 293
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=24.47 E-value=1.6e+02 Score=19.64 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
++.+++.+-..+--.-+..+|+..|..+
T Consensus 104 mk~~~~fL~~k~~~~~~~~~Fk~~L~~i 131 (265)
T PF09412_consen 104 MKLAHQFLVSKGLAPSDEAEFKKQLKNI 131 (265)
T ss_dssp HHHHHHHHHHTTSS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4444444433333456667777777665
No 294
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.44 E-value=1.6e+02 Score=17.30 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHcC---------CCCCHHHHHHHHHhhccCCCC-cccHHHHHH
Q 040628 2 ITIEELAVAIKSLD---------QNPTEEELRNMISEVDVNGNG-TIEFGEFLN 45 (124)
Q Consensus 2 l~~~el~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~ 45 (124)
||.+||.+++..-. +..++++++.+.+.+.....+ .++..|..+
T Consensus 84 Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 84 LSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 45566666655431 123555666666555554433 255555444
No 295
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=24.25 E-value=2.8e+02 Score=21.64 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHh
Q 040628 59 ELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDGDGQINYEEFARMM 120 (124)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 120 (124)
..+.+|+..-+.+.-.+..+.+... +.+++.+.++..++...+..|++..|.+.+
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 3456677766665545554444433 356778888888877666669999988765
No 296
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=23.85 E-value=1.1e+02 Score=15.19 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=7.2
Q ss_pred CCCCCHHHHHHHHHhh
Q 040628 15 DQNPTEEELRNMISEV 30 (124)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (124)
|..++.+++..++..+
T Consensus 12 g~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAI 27 (66)
T ss_dssp T----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4455666666666655
No 297
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.45 E-value=48 Score=25.23 Aligned_cols=62 Identities=23% Similarity=0.448 Sum_probs=39.1
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH---------HHHHHHhhCCCCC----------------------
Q 040628 60 LKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEE---------LEQMVREADLDGD---------------------- 108 (124)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~---------~~~~~~~~d~~~~---------------------- 108 (124)
...++...|-+.++..++.++......++..+...+ -..++...|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 445666777788888887777666655542222111 2235555666666
Q ss_pred -CceeHHHHHHHhc
Q 040628 109 -GQINYEEFARMML 121 (124)
Q Consensus 109 -~~i~~~ef~~~l~ 121 (124)
|.++.++.+.++.
T Consensus 519 ~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 519 FGVVTVDELVALLA 532 (975)
T ss_pred cCeeEHHHHHHHHH
Confidence 8888888888775
No 298
>PTZ00015 histone H4; Provisional
Probab=23.42 E-value=1.5e+02 Score=16.62 Aligned_cols=69 Identities=7% Similarity=0.104 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCC
Q 040628 17 NPTEEELRNMISEVDVNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIGEK 90 (124)
Q Consensus 17 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 90 (124)
.++..-+..+.+......=..--|+|+..++..... +.++.+.....-.+--.|+.+++..+++..|.+
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~-----~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLE-----NVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 466778888888776655444456777766644322 233333333333344468899998888877643
No 299
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=23.02 E-value=1.9e+02 Score=17.68 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=25.4
Q ss_pred hhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 040628 66 VFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREA 103 (124)
Q Consensus 66 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 103 (124)
.+...+-..|+.+++..++..+|..-=.+.++..+.++
T Consensus 78 kC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 78 KCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 34445566899999999999998653344455444444
No 300
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=22.94 E-value=1.9e+02 Score=17.54 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=22.5
Q ss_pred cCCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC--ccCHHHHHHHHH
Q 040628 32 VNGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDG--YISPNELRHVMM 85 (124)
Q Consensus 32 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--~i~~~e~~~~l~ 85 (124)
.|.+|.|+|+.+...=..... .....+...|+.+...++. .++.+++.....
T Consensus 63 gD~NGnidye~ls~~eqee~k--~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~e 116 (162)
T PF12207_consen 63 GDKNGNIDYEKLSKEEQEEYK--KLTMELQPYFDKLNGHKSSKEVLTQEEYDQYIE 116 (162)
T ss_dssp B-TTS-B-GGGS-HHHHHHHH--HHHHHHHHHHHHHTT---HHHHS-HHHHHHHHH
T ss_pred cccCCCcCHHhCCHHHHHHHH--HHHHhcchHHHHhcCCcchhhhcCHHHHHHHHH
Confidence 345667777765544322111 2223566677777655332 366666655443
No 301
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=22.83 E-value=1.5e+02 Score=16.36 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=7.5
Q ss_pred CccCHHHHHHHH
Q 040628 73 GYISPNELRHVM 84 (124)
Q Consensus 73 g~i~~~e~~~~l 84 (124)
|.+|..|+...+
T Consensus 54 ~~~tQrEIa~~l 65 (94)
T TIGR01321 54 GNMSQREIASKL 65 (94)
T ss_pred CCCCHHHHHHHh
Confidence 456666666655
No 302
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.80 E-value=1e+02 Score=15.18 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=16.4
Q ss_pred HHHhhccCCCCcccHHHHHHHH
Q 040628 26 MISEVDVNGNGTIEFGEFLNLM 47 (124)
Q Consensus 26 ~~~~~d~~~~g~i~~~ef~~~~ 47 (124)
++.......+|..+||.+..+.
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LA 40 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLA 40 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhh
Confidence 4455566788899999988775
No 303
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=22.79 E-value=2.2e+02 Score=18.21 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCCCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHH-HHHHHHHhCCCC
Q 040628 33 NGNGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNE-LRHVMMNIGEKV 91 (124)
Q Consensus 33 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e-~~~~l~~~~~~~ 91 (124)
+=||+||.+++...+...+..+... .+++ .--++.++..+ |..++..++.+.
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e~k----~l~~---~vls~tiS~rd~~g~mf~~i~~s~ 61 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGEWK----ALKD---GVLSKTISFRDGFGRMFGSIHSSL 61 (220)
T ss_pred cCCCceEecchhHHHHhccCchHHH----HHHH---HHhhCceeHHHHHHHHHHhcCCCH
Confidence 3478888888888876655433332 2322 22345566433 344555544333
No 304
>PHA02771 hypothetical protein; Provisional
Probab=22.49 E-value=1.5e+02 Score=16.21 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=7.0
Q ss_pred ccCHHHHHHHHHH
Q 040628 74 YISPNELRHVMMN 86 (124)
Q Consensus 74 ~i~~~e~~~~l~~ 86 (124)
.||.+++..+.+.
T Consensus 31 ~ite~ey~ELi~n 43 (90)
T PHA02771 31 IVSYNQFEEIIKD 43 (90)
T ss_pred EecHHHHHHHHcC
Confidence 4555555555543
No 305
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.49 E-value=1.6e+02 Score=16.47 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=13.1
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 62 EAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 62 ~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
..|+....+. ..++.++...++..
T Consensus 62 ~~~k~l~~~~-~~ls~~e~i~~l~~ 85 (115)
T cd03032 62 KAFKNLNIDI-DELSLSELIRLISE 85 (115)
T ss_pred HHHHHcCCCc-ccCCHHHHHHHHHh
Confidence 3455444333 34677777666654
No 306
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.45 E-value=1e+02 Score=14.29 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHcCCC
Q 040628 2 ITIEELAVAIKSLDQN 17 (124)
Q Consensus 2 l~~~el~~~l~~~~~~ 17 (124)
+|-.||...|..+|..
T Consensus 6 LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 6 LSDAELRAELKQYGLP 21 (44)
T ss_pred cCHHHHHHHHHHcCCC
Confidence 5667777777777764
No 307
>PHA02335 hypothetical protein
Probab=21.50 E-value=1.7e+02 Score=16.57 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=21.5
Q ss_pred CcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 040628 36 GTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQD 72 (124)
Q Consensus 36 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 72 (124)
..|+++||..-+... ..+...|+.+.+-++
T Consensus 23 ~sVt~ddf~~DlkRi-------~yIkrllKRy~~~~~ 52 (118)
T PHA02335 23 QSVTYDDFEEDLKRF-------KYIKRLFKRYLNTGE 52 (118)
T ss_pred ccccHHHHHHHHHHH-------HHHHHHHHhhcCCCC
Confidence 459999998887655 556777777766554
No 308
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=1.1e+02 Score=19.24 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=32.4
Q ss_pred CcccHHHHHHHHHHhccc--chHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 040628 36 GTIEFGEFLNLMARKMKE--NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNIG 88 (124)
Q Consensus 36 g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 88 (124)
..++|+....+|..+--. .-..-+...-.+-+|+-.+|.++.+|+...-....
T Consensus 19 TsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae~dP~ 73 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAEKDPN 73 (230)
T ss_pred ccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhhcCcc
Confidence 457888877776432111 11223455667778888888888888776654433
No 309
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.32 E-value=1.3e+02 Score=15.21 Aligned_cols=46 Identities=9% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCcccHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 040628 35 NGTIEFGEFLNLMARKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 86 (124)
Q Consensus 35 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 86 (124)
.|.++.++...+.... ...+..+.++..... .|.=.+..|..+|..
T Consensus 25 ~~vlt~~e~~~i~~~~----~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~ 70 (80)
T cd01671 25 DGVLTEEEYEKIRSES----TRQDKARKLLDILPR--KGPKAFQSFLQALQE 70 (80)
T ss_pred cCCCCHHHHHHHHcCC----ChHHHHHHHHHHHHh--cChHHHHHHHHHHHh
Confidence 3566666655543211 133444455555543 233444445555544
No 310
>PF14493 HTH_40: Helix-turn-helix domain
Probab=21.19 E-value=1.5e+02 Score=15.76 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=12.6
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHH
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHV 83 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~ 83 (124)
..+..++..++. .+++.+++-+
T Consensus 68 ~~lk~i~e~l~~----~~sy~~iRl~ 89 (91)
T PF14493_consen 68 EKLKPIKEALPG----DYSYFEIRLV 89 (91)
T ss_pred ccHHHHHHHCCC----CCCHHHHHHH
Confidence 455566666642 4666666654
No 311
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=21.08 E-value=5.9e+02 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=28.8
Q ss_pred cCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhhCC
Q 040628 68 DKDQDGYISPNELRHVMMNI--GEKVTDEELEQMVREADL 105 (124)
Q Consensus 68 D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~ 105 (124)
.++-..++|.++|....+.+ |..++++.+..++.....
T Consensus 756 np~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~ 795 (1780)
T PLN03076 756 NPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISK 795 (1780)
T ss_pred CCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHh
Confidence 44545588889988888765 467899999999988643
No 312
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.07 E-value=1.2e+02 Score=14.46 Aligned_cols=23 Identities=4% Similarity=0.394 Sum_probs=18.0
Q ss_pred hhhcCCCCCccCHHHHHHHHHHh
Q 040628 65 KVFDKDQDGYISPNELRHVMMNI 87 (124)
Q Consensus 65 ~~~D~~~~g~i~~~e~~~~l~~~ 87 (124)
..|+.+++-.++.++++..|..+
T Consensus 22 ~dYnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 22 EDYNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred cccCCCCccccCHHHHHHHHHhC
Confidence 45777888889999988888654
No 313
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=21.03 E-value=1.5e+02 Score=15.76 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh-cCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHH
Q 040628 40 FGEFLNLMARKMKENEAQEELKEAFKVF-DKDQDGYISPNELRHVMMNIGE-KVTDEELEQMVR 101 (124)
Q Consensus 40 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~-D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~ 101 (124)
++.+...+.......-..+.++..++.. ...+...++++++..-+.-.+. .++++--..++.
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~ 79 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQ 79 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3444444444333333444454444422 2234557898888877765553 334433333443
No 314
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=21.01 E-value=1.7e+02 Score=16.37 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=7.5
Q ss_pred ccCHHHHHHHHHH
Q 040628 74 YISPNELRHVMMN 86 (124)
Q Consensus 74 ~i~~~e~~~~l~~ 86 (124)
.++.++...++..
T Consensus 73 ~ls~~e~i~~l~~ 85 (114)
T TIGR00014 73 NLSDQELLDAMVA 85 (114)
T ss_pred CCCHHHHHHHHHH
Confidence 4566666665554
No 315
>PHA00003 B internal scaffolding protein
Probab=21.01 E-value=94 Score=17.58 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=22.8
Q ss_pred HHcCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 040628 12 KSLDQNPTEEELRNMISEVDVNGNGTIEFGEFLNL 46 (124)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 46 (124)
+..|..++.+...+++..||++. ..|-..||.++
T Consensus 76 RrFGgAtcddksa~iya~FD~~d-~rVQpaEFYRF 109 (120)
T PHA00003 76 RRFGGATCDDKSAKIYAQFDPND-RRVQPAEFYRF 109 (120)
T ss_pred HHcCCCCcchHHHHHhcccCccc-ceechhHheec
Confidence 44677777777777888887763 45666666554
No 316
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=20.67 E-value=2.5e+02 Score=18.04 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=12.0
Q ss_pred HHHHHHHHhhCCCCCCce
Q 040628 94 EELEQMVREADLDGDGQI 111 (124)
Q Consensus 94 ~~~~~~~~~~d~~~~~~i 111 (124)
+.+-.+.+.||++..|.|
T Consensus 209 ~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 209 PKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred HHHHHHHHhcCCCCcCce
Confidence 445667777777777665
No 317
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=20.64 E-value=2.3e+02 Score=17.69 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=12.6
Q ss_pred CCccCHHHHHHHHHHhCCC
Q 040628 72 DGYISPNELRHVMMNIGEK 90 (124)
Q Consensus 72 ~g~i~~~e~~~~l~~~~~~ 90 (124)
.|.+++-+|+.++..++..
T Consensus 130 ~~~lhW~~F~aL~~~L~~~ 148 (183)
T PF06854_consen 130 QGYLHWWKFKALFNGLSED 148 (183)
T ss_pred cccCcHHHHHHHHhcCCCC
Confidence 4667777777777766543
No 318
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=20.63 E-value=1.6e+02 Score=16.45 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 040628 58 EELKEAFKVFDKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREA 103 (124)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 103 (124)
+.+..+.+.+..-+ ++..+..+++... +.+..++..++...
T Consensus 57 e~~~~l~~~L~~~~---L~~~E~~qi~Nl~--P~~~~El~~ii~~~ 97 (117)
T PF03874_consen 57 ESIKELREELKKFG---LTEFEILQIINLR--PTTAVELRAIIESL 97 (117)
T ss_dssp HHHHHHHHHHTTST---S-HHHHHHHHHH----SSHHHHHHHSTTG
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHhcCC--CCCHHHHHHHHHHh
Confidence 34455555554222 6666666665542 23444444444433
No 319
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.60 E-value=1.8e+02 Score=16.57 Aligned_cols=9 Identities=11% Similarity=-0.200 Sum_probs=3.7
Q ss_pred cccHHHHHH
Q 040628 37 TIEFGEFLN 45 (124)
Q Consensus 37 ~i~~~ef~~ 45 (124)
..+.+|+..
T Consensus 92 ~~tk~ev~~ 100 (118)
T TIGR01837 92 IPSREEIEA 100 (118)
T ss_pred CCCHHHHHH
Confidence 344444333
No 320
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=20.51 E-value=1e+02 Score=13.64 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCCC
Q 040628 80 LRHVMMNIGEKVTDEELEQMVREADLD 106 (124)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~d~~ 106 (124)
-...++.+.+.++.+.+..+++..+.+
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 344556666777777777777766543
No 321
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=20.27 E-value=1.7e+02 Score=16.06 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 040628 2 ITIEELAVAIKSLDQNPTEEELRNMISEV 30 (124)
Q Consensus 2 l~~~el~~~l~~~~~~~~~~~~~~~~~~~ 30 (124)
|+.+++..+.+...+.+++.+...+...+
T Consensus 3 i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 3 IDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred cCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 66777777777667777877777666554
No 322
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.26 E-value=2e+02 Score=23.57 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=34.8
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 040628 68 DKDQDGYISPNELRHVMMNIGEKVTDEELEQMVREADLDG 107 (124)
Q Consensus 68 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 107 (124)
|.---|+|+.+.+..++..+|...+.+++..+|..+..+.
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccH
Confidence 5567799999999999999999999999999999886543
No 323
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.25 E-value=1.6e+02 Score=17.34 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=13.3
Q ss_pred CCCcccHHHHHHHHHHh
Q 040628 34 GNGTIEFGEFLNLMARK 50 (124)
Q Consensus 34 ~~g~i~~~ef~~~~~~~ 50 (124)
.+|.|+-.+|++.+.+.
T Consensus 41 rng~IsVreFVr~La~S 57 (131)
T PF00427_consen 41 RNGQISVREFVRALAKS 57 (131)
T ss_dssp HTTSS-HHHHHHHHHTS
T ss_pred HcCCCcHHHHHHHHHcC
Confidence 46899999999999653
No 324
>PLN02223 phosphoinositide phospholipase C
Probab=20.05 E-value=3.9e+02 Score=20.09 Aligned_cols=68 Identities=6% Similarity=0.032 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHHHHh---ccc-chHHHHHHHHHhhhcC--------CCCCccCHHHHHHHHH
Q 040628 18 PTEEELRNMISEVDVNGNGTIEFGEFLNLMARK---MKE-NEAQEELKEAFKVFDK--------DQDGYISPNELRHVMM 85 (124)
Q Consensus 18 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~---~~~-~~~~~~~~~~f~~~D~--------~~~g~i~~~e~~~~l~ 85 (124)
.++.++..+|..+. .+.|.++.+.+.+++... -.. ....+....++..+-. ...+.++.+.|...|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 46789999999984 556788888888887322 111 1112223333332211 1225689999988875
Q ss_pred H
Q 040628 86 N 86 (124)
Q Consensus 86 ~ 86 (124)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 4
Done!