Query 040629
Match_columns 786
No_of_seqs 318 out of 2096
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 10:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 2E-149 4E-154 1331.8 84.2 765 3-772 16-805 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-121 7E-126 1072.9 57.0 746 9-765 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 2.7E-46 5.9E-51 436.0 48.4 411 30-462 5-421 (621)
4 PRK10669 putative cation:proto 100.0 1.3E-45 2.8E-50 429.2 53.2 411 31-464 7-437 (558)
5 PRK03659 glutathione-regulated 100.0 1.6E-45 3.6E-50 428.9 47.7 411 30-461 5-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 2.5E-44 5.5E-49 398.0 45.0 376 29-421 5-387 (397)
7 PRK05326 potassium/proton anti 100.0 1.2E-39 2.7E-44 378.7 37.8 376 28-420 4-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 2.4E-39 5.1E-44 360.9 -4.7 369 38-418 4-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 2.1E-34 4.6E-39 306.0 32.0 267 40-325 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 7.2E-33 1.6E-37 276.9 31.2 374 24-419 1-388 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3.2E-27 7E-32 271.1 38.0 361 36-418 4-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 4.8E-27 1E-31 269.9 38.6 358 17-390 2-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 9E-24 1.9E-28 236.1 38.7 376 30-419 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 1.8E-24 3.9E-29 226.9 27.4 348 26-394 3-360 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 7E-23 1.5E-27 235.0 37.0 377 29-419 8-417 (559)
16 PRK11175 universal stress prot 99.8 1.7E-18 3.7E-23 187.2 18.5 282 441-760 4-299 (305)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 6.7E-17 1.5E-21 164.7 24.8 338 34-386 18-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 1.2E-14 2.6E-19 158.6 33.2 269 88-387 61-363 (423)
19 KOG1965 Sodium/hydrogen exchan 99.7 6.7E-16 1.4E-20 170.7 23.5 379 32-421 37-457 (575)
20 cd01988 Na_H_Antiporter_C The 99.4 8.9E-13 1.9E-17 123.6 11.9 131 442-594 1-131 (132)
21 TIGR00773 NhaA Na+/H+ antiport 99.4 4E-11 8.7E-16 128.7 25.5 269 88-387 51-344 (373)
22 PRK15456 universal stress prot 99.2 9E-11 2E-15 111.9 9.7 135 441-594 3-141 (142)
23 PRK15005 universal stress prot 99.2 1.7E-10 3.6E-15 110.2 10.8 137 441-594 3-143 (144)
24 cd01989 STK_N The N-terminal d 99.1 2.4E-10 5.2E-15 109.4 10.9 138 442-594 1-143 (146)
25 KOG1966 Sodium/hydrogen exchan 99.1 4.3E-11 9.4E-16 132.0 5.8 373 31-418 43-448 (670)
26 PRK15118 universal stress glob 99.1 3.1E-10 6.8E-15 108.4 9.0 133 441-594 4-137 (144)
27 PRK14856 nhaA pH-dependent sod 99.0 4E-08 8.8E-13 107.4 24.3 268 88-387 67-398 (438)
28 PRK09982 universal stress prot 99.0 5.2E-10 1.1E-14 106.7 8.5 134 441-594 4-137 (142)
29 cd01987 USP_OKCHK USP domain i 99.0 1.4E-09 3E-14 100.9 10.1 122 442-594 1-123 (124)
30 PRK09560 nhaA pH-dependent sod 99.0 1.3E-07 2.8E-12 102.0 25.3 269 88-387 58-353 (389)
31 PRK09561 nhaA pH-dependent sod 98.9 2.5E-07 5.3E-12 99.6 24.4 269 88-387 58-351 (388)
32 PRK14854 nhaA pH-dependent sod 98.9 5E-07 1.1E-11 96.9 26.5 270 88-388 55-349 (383)
33 PF00582 Usp: Universal stress 98.9 6.7E-09 1.5E-13 97.2 11.1 133 441-594 3-139 (140)
34 PRK14855 nhaA pH-dependent sod 98.9 4.8E-07 1E-11 98.7 24.8 284 88-405 62-401 (423)
35 PRK10116 universal stress prot 98.9 9.2E-09 2E-13 97.9 10.0 135 441-596 4-139 (142)
36 PRK11175 universal stress prot 98.8 1.4E-08 3.1E-13 109.7 9.4 144 440-600 152-304 (305)
37 cd01989 STK_N The N-terminal d 98.8 7.9E-08 1.7E-12 91.9 13.1 137 609-761 1-145 (146)
38 PRK15005 universal stress prot 98.7 3.3E-07 7.1E-12 87.3 13.5 136 607-760 2-144 (144)
39 PRK09982 universal stress prot 98.7 1.5E-07 3.2E-12 89.8 10.7 134 607-760 3-138 (142)
40 cd00293 USP_Like Usp: Universa 98.7 1.6E-07 3.5E-12 86.7 10.7 129 442-593 1-129 (130)
41 PF06965 Na_H_antiport_1: Na+/ 98.6 2E-07 4.2E-12 100.4 11.9 279 87-396 53-360 (378)
42 cd01988 Na_H_Antiporter_C The 98.6 9.2E-07 2E-11 82.6 13.4 131 609-760 1-132 (132)
43 PRK15456 universal stress prot 98.5 1E-06 2.3E-11 83.8 12.9 135 607-760 2-142 (142)
44 PF00582 Usp: Universal stress 98.5 5.2E-07 1.1E-11 84.2 10.5 135 607-759 2-139 (140)
45 COG3004 NhaA Na+/H+ antiporter 98.5 8.3E-05 1.8E-09 77.2 24.4 263 92-388 65-355 (390)
46 cd01987 USP_OKCHK USP domain i 98.4 1.4E-06 3.1E-11 80.6 10.6 123 609-759 1-123 (124)
47 PRK10116 universal stress prot 98.4 1.6E-06 3.4E-11 82.4 9.6 134 607-760 3-138 (142)
48 PRK15118 universal stress glob 98.4 1.3E-06 2.8E-11 83.3 9.0 134 607-761 3-139 (144)
49 COG0589 UspA Universal stress 98.4 2.3E-06 5.1E-11 81.8 10.7 144 440-595 5-151 (154)
50 cd00293 USP_Like Usp: Universa 98.1 2.8E-05 6E-10 71.6 12.3 129 609-759 1-130 (130)
51 PRK12460 2-keto-3-deoxyglucona 98.0 0.0014 2.9E-08 69.3 21.8 252 98-421 51-307 (312)
52 PF05684 DUF819: Protein of un 98.0 0.035 7.6E-07 61.5 33.9 309 53-399 24-358 (378)
53 PRK12652 putative monovalent c 98.0 5.5E-05 1.2E-09 82.6 11.7 125 606-752 4-145 (357)
54 PRK12652 putative monovalent c 97.7 0.00024 5.2E-09 77.6 11.8 130 441-590 6-145 (357)
55 PF03616 Glt_symporter: Sodium 97.6 0.042 9.1E-07 60.8 27.6 92 277-369 246-342 (368)
56 COG0786 GltS Na+/glutamate sym 97.5 0.04 8.8E-07 59.7 24.3 123 262-384 227-360 (404)
57 PF03812 KdgT: 2-keto-3-deoxyg 97.3 0.03 6.4E-07 59.1 19.9 89 97-186 50-140 (314)
58 COG0385 Predicted Na+-dependen 97.2 0.21 4.5E-06 53.4 26.0 111 89-211 35-150 (319)
59 TIGR00698 conserved hypothetic 97.2 0.36 7.8E-06 52.5 28.3 145 49-208 26-172 (335)
60 TIGR00210 gltS sodium--glutama 97.2 0.22 4.7E-06 55.6 27.2 290 31-367 8-338 (398)
61 COG0798 ACR3 Arsenite efflux p 97.1 0.46 9.9E-06 50.8 26.5 178 55-246 18-202 (342)
62 COG0589 UspA Universal stress 97.0 0.0094 2E-07 56.6 12.6 141 606-761 4-152 (154)
63 PF13593 DUF4137: SBF-like CPA 96.9 0.59 1.3E-05 50.6 26.2 112 91-211 30-146 (313)
64 TIGR00832 acr3 arsenical-resis 96.8 0.88 1.9E-05 49.7 27.1 47 339-385 252-299 (328)
65 TIGR00793 kdgT 2-keto-3-deoxyg 96.6 0.13 2.8E-06 54.1 17.0 89 98-187 51-141 (314)
66 PRK03562 glutathione-regulated 96.5 0.093 2E-06 62.4 17.8 131 259-392 10-142 (621)
67 TIGR00841 bass bile acid trans 96.4 1.7 3.6E-05 46.5 25.6 47 340-386 202-249 (286)
68 PF03601 Cons_hypoth698: Conse 96.4 0.71 1.5E-05 49.7 22.4 141 50-207 22-165 (305)
69 TIGR00932 2a37 transporter, mo 96.3 0.13 2.8E-06 54.7 16.2 127 265-394 3-132 (273)
70 PRK03659 glutathione-regulated 96.2 0.17 3.6E-06 60.1 17.6 113 259-373 10-125 (601)
71 PRK10669 putative cation:proto 96.1 0.18 3.8E-06 59.5 17.6 133 260-395 12-146 (558)
72 COG3180 AbrB Putative ammonia 96.0 3 6.6E-05 45.2 30.8 298 31-387 7-318 (352)
73 PF03390 2HCT: 2-hydroxycarbox 96.0 3.5 7.7E-05 45.8 27.5 99 294-393 291-395 (414)
74 PRK10490 sensor protein KdpD; 95.9 0.043 9.4E-07 68.1 11.3 125 438-595 248-373 (895)
75 PF03601 Cons_hypoth698: Conse 95.8 0.39 8.4E-06 51.7 17.0 127 261-388 5-139 (305)
76 COG3493 CitS Na+/citrate sympo 95.7 4.1 8.9E-05 44.2 27.6 91 301-393 317-414 (438)
77 PRK05326 potassium/proton anti 95.6 0.24 5.2E-06 58.4 15.8 116 261-377 13-133 (562)
78 COG2855 Predicted membrane pro 95.5 0.21 4.6E-06 53.4 12.9 115 271-387 30-147 (334)
79 COG0475 KefB Kef-type K+ trans 95.3 0.54 1.2E-05 52.8 16.6 135 259-400 11-154 (397)
80 PRK03818 putative transporter; 95.2 0.26 5.6E-06 57.7 13.8 129 32-176 8-141 (552)
81 PF03956 DUF340: Membrane prot 95.1 0.23 5.1E-06 49.5 11.5 129 58-208 2-135 (191)
82 PRK05274 2-keto-3-deoxyglucona 95.1 2.1 4.6E-05 46.4 19.6 46 99-144 54-99 (326)
83 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 0.61 1.3E-05 55.9 16.3 70 308-377 74-146 (810)
84 PF06826 Asp-Al_Ex: Predicted 95.0 0.98 2.1E-05 44.2 15.2 127 37-177 4-136 (169)
85 PF01758 SBF: Sodium Bile acid 94.9 1.2 2.5E-05 44.5 16.0 108 96-211 2-111 (187)
86 PLN03159 cation/H(+) antiporte 94.5 0.9 1.9E-05 55.9 16.7 40 605-644 456-497 (832)
87 TIGR00698 conserved hypothetic 94.1 2.3 5E-05 46.4 16.8 123 263-387 11-144 (335)
88 TIGR00831 a_cpa1 Na+/H+ antipo 94.0 0.68 1.5E-05 54.0 13.7 116 261-379 5-124 (525)
89 TIGR03802 Asp_Ala_antiprt aspa 93.6 0.44 9.5E-06 55.9 11.1 92 35-141 15-110 (562)
90 PRK10490 sensor protein KdpD; 93.5 0.4 8.6E-06 59.7 11.1 123 606-759 249-372 (895)
91 COG2205 KdpD Osmosensitive K+ 93.5 0.32 6.9E-06 57.5 9.4 126 438-594 246-372 (890)
92 PF05145 AmoA: Putative ammoni 93.4 14 0.00031 40.1 26.9 152 259-419 157-315 (318)
93 PRK04972 putative transporter; 93.3 0.54 1.2E-05 55.1 11.3 119 35-176 17-140 (558)
94 TIGR00783 ccs citrate carrier 93.3 7.2 0.00016 42.5 18.7 117 277-393 203-328 (347)
95 cd01984 AANH_like Adenine nucl 93.1 0.25 5.4E-06 42.2 6.2 49 538-592 35-84 (86)
96 TIGR00930 2a30 K-Cl cotranspor 93.0 32 0.0007 43.2 30.9 106 438-567 573-683 (953)
97 COG2855 Predicted membrane pro 92.5 18 0.00039 39.1 24.9 108 49-172 32-140 (334)
98 PF03977 OAD_beta: Na+-transpo 92.2 0.95 2.1E-05 48.2 9.9 111 307-423 66-179 (360)
99 TIGR03082 Gneg_AbrB_dup membra 92.1 4.8 0.0001 38.9 14.2 117 263-386 4-127 (156)
100 TIGR03082 Gneg_AbrB_dup membra 91.7 11 0.00025 36.2 16.3 98 37-147 2-101 (156)
101 COG1346 LrgB Putative effector 91.2 17 0.00036 37.1 17.0 111 296-417 60-171 (230)
102 PRK04288 antiholin-like protei 90.9 17 0.00037 37.4 17.1 110 297-417 64-174 (232)
103 TIGR01625 YidE_YbjL_dupl AspT/ 90.8 3.4 7.3E-05 39.8 11.5 114 53-178 20-138 (154)
104 TIGR03136 malonate_biotin Na+- 90.6 3.6 7.7E-05 44.5 12.4 113 306-423 101-216 (399)
105 TIGR03802 Asp_Ala_antiprt aspa 90.4 3.2 7E-05 48.8 13.3 114 51-178 412-531 (562)
106 PRK03359 putative electron tra 89.8 1.2 2.6E-05 46.7 8.1 112 612-745 30-149 (256)
107 COG2985 Predicted permease [Ge 89.8 2.4 5.3E-05 47.4 10.6 79 95-181 62-147 (544)
108 PF03616 Glt_symporter: Sodium 88.9 5.6 0.00012 44.2 13.0 112 310-422 67-187 (368)
109 TIGR00210 gltS sodium--glutama 87.6 15 0.00034 41.1 15.4 167 33-207 222-393 (398)
110 TIGR00946 2a69 he Auxin Efflux 87.2 11 0.00024 40.9 14.0 135 52-206 180-315 (321)
111 COG0025 NhaP NhaP-type Na+/H+ 86.6 17 0.00036 41.4 15.3 123 259-382 11-139 (429)
112 TIGR02432 lysidine_TilS_N tRNA 86.6 4.4 9.6E-05 40.2 9.6 36 609-644 1-36 (189)
113 PRK10711 hypothetical protein; 86.4 32 0.00068 35.4 15.6 109 298-417 60-169 (231)
114 TIGR00659 conserved hypothetic 86.2 43 0.00093 34.3 16.8 109 298-417 59-168 (226)
115 PRK12460 2-keto-3-deoxyglucona 85.7 7 0.00015 41.8 10.8 75 57-143 169-243 (312)
116 PF01171 ATP_bind_3: PP-loop f 84.5 10 0.00022 37.5 11.0 92 609-720 1-105 (182)
117 PF00999 Na_H_Exchanger: Sodiu 84.4 0.35 7.5E-06 53.9 0.5 111 264-375 6-123 (380)
118 PRK04972 putative transporter; 84.3 13 0.00028 43.8 13.3 130 35-178 386-526 (558)
119 PRK12342 hypothetical protein; 84.2 3.8 8.2E-05 42.9 8.0 31 612-643 29-59 (254)
120 PF01012 ETF: Electron transfe 84.0 3.9 8.4E-05 39.7 7.6 81 618-720 15-99 (164)
121 COG3329 Predicted permease [Ge 83.6 17 0.00037 38.3 12.2 122 278-399 16-138 (372)
122 PF05145 AmoA: Putative ammoni 83.0 14 0.0003 40.2 12.1 102 33-147 155-258 (318)
123 TIGR00808 malonate_madM malona 82.3 23 0.00051 35.2 11.8 105 35-146 21-133 (254)
124 PF03547 Mem_trans: Membrane t 81.9 11 0.00024 42.0 11.3 107 281-387 9-119 (385)
125 PF04172 LrgB: LrgB-like famil 81.7 65 0.0014 32.9 15.9 109 297-416 48-157 (215)
126 TIGR01109 Na_pump_decarbB sodi 80.1 9.1 0.0002 40.9 8.9 112 306-423 59-179 (354)
127 PRK03818 putative transporter; 79.6 1.2E+02 0.0025 35.8 18.9 82 281-363 33-121 (552)
128 COG0679 Predicted permeases [G 79.0 1E+02 0.0022 33.4 27.9 134 278-416 167-305 (311)
129 COG4651 RosB Kef-type K+ trans 78.8 11 0.00025 39.7 8.9 126 259-392 11-143 (408)
130 TIGR02039 CysD sulfate adenyly 78.4 7.1 0.00015 41.7 7.7 37 608-644 20-56 (294)
131 cd01992 PP-ATPase N-terminal d 78.2 13 0.00028 36.6 9.2 36 609-644 1-36 (185)
132 PRK15475 oxaloacetate decarbox 78.2 6.2 0.00013 42.7 7.0 113 306-423 130-250 (433)
133 PRK15477 oxaloacetate decarbox 77.8 6.4 0.00014 42.6 7.0 113 306-423 130-250 (433)
134 PRK15476 oxaloacetate decarbox 77.8 6.4 0.00014 42.6 7.0 113 306-423 130-250 (433)
135 PRK09903 putative transporter 77.7 39 0.00085 36.6 13.5 109 52-178 171-280 (314)
136 PF03956 DUF340: Membrane prot 77.5 5.3 0.00011 39.9 6.0 50 334-383 57-106 (191)
137 COG0786 GltS Na+/glutamate sym 77.4 16 0.00035 40.2 10.0 113 309-421 68-187 (404)
138 COG2205 KdpD Osmosensitive K+ 76.4 13 0.00027 44.7 9.5 124 607-760 248-373 (890)
139 COG3263 NhaP-type Na+/H+ and K 76.1 34 0.00073 38.3 11.9 112 269-380 22-137 (574)
140 cd01993 Alpha_ANH_like_II This 75.5 26 0.00055 34.3 10.5 36 609-644 1-38 (185)
141 COG3969 Predicted phosphoadeno 75.3 6.7 0.00014 42.0 6.2 58 606-681 26-84 (407)
142 COG1346 LrgB Putative effector 74.4 1.1E+02 0.0023 31.4 15.2 93 44-144 20-116 (230)
143 COG5505 Predicted integral mem 73.8 1.3E+02 0.0028 32.1 29.6 308 52-394 30-359 (384)
144 COG3180 AbrB Putative ammonia 73.0 1E+02 0.0022 33.7 14.7 119 258-383 10-135 (352)
145 PRK05253 sulfate adenylyltrans 72.5 12 0.00026 40.3 7.7 37 608-644 28-64 (301)
146 PRK12563 sulfate adenylyltrans 72.5 9.7 0.00021 41.0 6.9 37 608-644 38-74 (312)
147 COG2086 FixA Electron transfer 72.0 22 0.00048 37.3 9.2 113 611-747 30-150 (260)
148 COG0679 Predicted permeases [G 71.1 83 0.0018 34.0 13.9 82 52-143 166-249 (311)
149 PF13593 DUF4137: SBF-like CPA 69.2 54 0.0012 35.6 11.9 88 280-370 6-98 (313)
150 TIGR00946 2a69 he Auxin Efflux 68.9 1.7E+02 0.0038 31.5 27.6 134 278-417 181-319 (321)
151 cd01713 PAPS_reductase This do 68.2 24 0.00052 33.7 8.3 35 609-644 1-35 (173)
152 COG2431 Predicted membrane pro 67.9 1.1E+02 0.0023 32.3 12.7 76 56-143 108-187 (297)
153 cd01984 AANH_like Adenine nucl 67.2 6 0.00013 33.5 3.3 33 610-643 1-33 (86)
154 COG1883 OadB Na+-transporting 65.8 1.9 4.1E-05 44.8 -0.1 112 308-425 82-196 (375)
155 TIGR01625 YidE_YbjL_dupl AspT/ 64.5 32 0.00069 33.1 7.9 88 281-370 24-121 (154)
156 PRK04288 antiholin-like protei 63.2 1.9E+02 0.0041 29.9 14.2 46 99-144 74-119 (232)
157 PF05684 DUF819: Protein of un 60.9 1.3E+02 0.0029 33.5 13.2 95 303-400 51-150 (378)
158 TIGR00840 b_cpa1 sodium/hydrog 60.7 92 0.002 36.7 12.5 73 309-381 69-151 (559)
159 COG0037 MesJ tRNA(Ile)-lysidin 59.7 79 0.0017 33.6 11.1 37 607-645 21-57 (298)
160 PRK10660 tilS tRNA(Ile)-lysidi 59.4 66 0.0014 36.7 10.7 60 607-682 15-75 (436)
161 PF03812 KdgT: 2-keto-3-deoxyg 56.7 51 0.0011 35.3 8.5 74 58-143 175-248 (314)
162 COG1646 Predicted phosphate-bi 56.7 50 0.0011 33.8 8.0 96 526-631 15-119 (240)
163 PF07905 PucR: Purine cataboli 55.6 72 0.0016 29.2 8.5 87 468-560 20-108 (123)
164 COG2985 Predicted permease [Ge 54.7 64 0.0014 36.6 9.1 109 52-174 393-507 (544)
165 PF06826 Asp-Al_Ex: Predicted 53.4 1.8E+02 0.0038 28.5 11.1 104 278-385 23-136 (169)
166 PRK01565 thiamine biosynthesis 52.7 66 0.0014 36.1 9.2 44 597-644 166-209 (394)
167 COG2035 Predicted membrane pro 51.6 3.2E+02 0.0069 28.9 15.7 45 28-74 59-105 (276)
168 PRK12933 secD preprotein trans 51.1 1.5E+02 0.0032 35.1 11.8 18 228-245 579-596 (604)
169 cd01712 ThiI ThiI is required 49.9 1.3E+02 0.0028 29.3 9.8 32 609-644 1-32 (177)
170 TIGR00832 acr3 arsenical-resis 49.8 3.4E+02 0.0074 29.6 13.9 68 316-385 50-127 (328)
171 TIGR00342 thiazole biosynthesi 49.7 43 0.00092 37.3 7.1 43 598-644 163-205 (371)
172 PRK10696 tRNA 2-thiocytidine b 49.7 81 0.0018 33.1 8.9 38 607-644 29-68 (258)
173 TIGR00793 kdgT 2-keto-3-deoxyg 49.2 1.2E+02 0.0025 32.6 9.5 75 57-143 174-248 (314)
174 PF01507 PAPS_reduct: Phosphoa 48.0 36 0.00078 32.8 5.6 32 609-644 1-32 (174)
175 COG3371 Predicted membrane pro 48.0 1.2E+02 0.0026 29.8 8.8 63 51-124 73-135 (181)
176 PF11700 ATG22: Vacuole efflux 45.9 5.2E+02 0.011 29.8 21.8 39 169-208 268-306 (477)
177 TIGR00783 ccs citrate carrier 45.5 1.3E+02 0.0028 33.0 9.6 91 45-144 194-291 (347)
178 PF03652 UPF0081: Uncharacteri 45.4 54 0.0012 30.8 6.0 61 537-600 37-98 (135)
179 PRK04125 murein hydrolase regu 45.3 2.7E+02 0.0059 26.3 11.5 39 312-350 68-109 (141)
180 KOG2310 DNA repair exonuclease 45.3 27 0.00059 39.8 4.5 80 538-620 39-131 (646)
181 KOG0573 Asparagine synthase [A 44.5 1.7E+02 0.0037 32.9 10.3 106 575-701 224-332 (520)
182 KOG2563 Permease of the major 44.1 5.4E+02 0.012 29.4 15.1 36 32-67 86-123 (480)
183 PF03547 Mem_trans: Membrane t 43.2 4.9E+02 0.011 28.6 22.2 83 279-362 244-335 (385)
184 COG2431 Predicted membrane pro 43.1 4.3E+02 0.0093 28.0 12.7 48 336-383 166-213 (297)
185 COG3199 Predicted inorganic po 42.2 1E+02 0.0022 33.6 7.9 50 689-740 77-128 (355)
186 PF04172 LrgB: LrgB-like famil 41.9 4E+02 0.0086 27.2 15.7 72 101-180 60-131 (215)
187 KOG1650 Predicted K+/H+-antipo 40.9 3E+02 0.0066 33.8 12.9 42 439-482 613-654 (769)
188 PF05982 DUF897: Domain of unk 40.9 2.8E+02 0.0062 30.1 11.1 69 334-402 56-124 (327)
189 PF05982 DUF897: Domain of unk 40.6 2.5E+02 0.0054 30.5 10.6 47 97-144 212-261 (327)
190 PF02355 SecD_SecF: Protein ex 40.3 3.9E+02 0.0084 26.6 15.1 24 222-245 166-189 (189)
191 PF01889 DUF63: Membrane prote 39.4 4.9E+02 0.011 27.6 16.8 48 157-204 146-195 (273)
192 cd01995 ExsB ExsB is a transcr 39.2 1.6E+02 0.0035 28.3 8.6 32 609-644 1-32 (169)
193 PF09605 Trep_Strep: Hypotheti 39.0 4E+02 0.0087 26.4 14.7 124 229-358 38-181 (186)
194 PRK00109 Holliday junction res 38.9 47 0.001 31.3 4.5 59 539-600 42-100 (138)
195 PRK08185 hypothetical protein; 38.7 73 0.0016 34.0 6.4 106 523-638 11-125 (283)
196 PF13194 DUF4010: Domain of un 37.2 4.6E+02 0.01 26.6 18.1 51 155-208 25-75 (211)
197 PF02601 Exonuc_VII_L: Exonucl 36.9 79 0.0017 34.3 6.6 52 670-722 28-86 (319)
198 TIGR01520 FruBisAldo_II_A fruc 36.2 1.1E+02 0.0023 33.7 7.2 89 508-600 12-111 (357)
199 PF01171 ATP_bind_3: PP-loop f 36.1 4.2E+02 0.0091 25.8 11.8 94 442-560 1-105 (182)
200 TIGR02185 Trep_Strep conserved 36.0 4.5E+02 0.0097 26.1 14.4 81 279-359 86-185 (189)
201 PRK04125 murein hydrolase regu 35.1 4E+02 0.0087 25.3 10.9 102 29-143 7-116 (141)
202 cd01986 Alpha_ANH_like Adenine 34.2 2E+02 0.0043 25.1 7.6 31 610-644 1-31 (103)
203 PRK06801 hypothetical protein; 34.0 2.4E+02 0.0052 30.1 9.4 107 523-638 16-131 (286)
204 PRK05812 secD preprotein trans 33.4 4.4E+02 0.0094 30.6 12.0 23 223-245 466-488 (498)
205 PRK06806 fructose-bisphosphate 33.3 89 0.0019 33.3 6.0 108 523-638 16-131 (281)
206 cd00946 FBP_aldolase_IIA Class 33.0 1.7E+02 0.0038 32.0 8.2 87 510-600 3-99 (345)
207 PRK00536 speE spermidine synth 32.1 1.6E+02 0.0036 30.9 7.7 76 606-719 72-147 (262)
208 cd06278 PBP1_LacI_like_2 Ligan 31.7 5.6E+02 0.012 25.9 13.3 108 507-642 13-122 (266)
209 TIGR02432 lysidine_TilS_N tRNA 31.4 3E+02 0.0064 26.9 9.2 95 442-561 1-109 (189)
210 COG0816 Predicted endonuclease 31.3 91 0.002 29.5 5.0 57 539-598 41-97 (141)
211 cd01985 ETF The electron trans 31.3 3.1E+02 0.0068 26.7 9.3 27 616-643 17-43 (181)
212 cd01994 Alpha_ANH_like_IV This 31.3 3E+02 0.0064 27.5 9.1 32 609-644 1-32 (194)
213 TIGR02057 PAPS_reductase phosp 30.8 3.2E+02 0.007 28.0 9.5 35 607-644 25-59 (226)
214 PF03686 UPF0146: Uncharacteri 30.8 90 0.002 28.9 4.7 36 528-563 72-107 (127)
215 COG0385 Predicted Na+-dependen 30.7 7.1E+02 0.015 27.1 12.2 74 310-385 41-121 (319)
216 cd01990 Alpha_ANH_like_I This 30.6 3.4E+02 0.0074 26.9 9.6 32 610-644 1-32 (202)
217 PRK12737 gatY tagatose-bisphos 30.4 1.6E+02 0.0036 31.3 7.4 71 523-600 16-86 (284)
218 COG1570 XseA Exonuclease VII, 29.5 96 0.0021 35.0 5.6 54 668-722 147-204 (440)
219 cd01993 Alpha_ANH_like_II This 29.3 5E+02 0.011 25.0 10.5 38 442-479 1-38 (185)
220 PRK12857 fructose-1,6-bisphosp 28.9 1.7E+02 0.0038 31.1 7.3 71 523-600 16-86 (284)
221 PRK05274 2-keto-3-deoxyglucona 28.5 8E+02 0.017 26.8 13.1 47 97-143 204-250 (326)
222 PF06939 DUF1286: Protein of u 28.5 1.1E+02 0.0024 27.5 4.7 58 13-70 53-110 (114)
223 PRK12911 bifunctional preprote 28.2 5.9E+02 0.013 33.1 12.4 22 224-245 1043-1064(1403)
224 KOG2718 Na+-bile acid cotransp 27.9 4.5E+02 0.0097 29.2 10.3 48 96-144 117-164 (371)
225 PRK03612 spermidine synthase; 27.5 1E+03 0.022 27.7 17.8 48 157-206 118-167 (521)
226 COG1597 LCB5 Sphingosine kinas 27.2 99 0.0021 33.3 5.2 71 666-742 18-89 (301)
227 PRK14561 hypothetical protein; 27.2 3E+02 0.0066 27.4 8.4 31 609-644 2-32 (194)
228 PRK01821 hypothetical protein; 26.6 5.4E+02 0.012 24.1 11.5 99 258-357 14-118 (133)
229 PRK09903 putative transporter 26.5 8.2E+02 0.018 26.2 25.3 133 279-418 173-310 (314)
230 TIGR01858 tag_bisphos_ald clas 26.4 2.2E+02 0.0047 30.4 7.4 95 523-626 14-114 (282)
231 KOG1288 Amino acid transporter 26.3 1.2E+03 0.027 28.2 19.6 120 417-561 538-662 (945)
232 cd06304 PBP1_BmpA_like Peripla 25.8 7.2E+02 0.016 25.3 15.6 100 507-633 15-116 (260)
233 PRK10478 putative PTS system f 25.0 9.5E+02 0.021 26.6 12.2 32 111-143 4-35 (359)
234 PRK01269 tRNA s(4)U8 sulfurtra 24.1 1.9E+02 0.0041 33.4 7.1 45 596-644 166-210 (482)
235 PRK09197 fructose-bisphosphate 24.0 2.7E+02 0.0058 30.6 7.7 88 509-600 7-104 (350)
236 cd00947 TBP_aldolase_IIB Tagat 23.8 2.6E+02 0.0057 29.7 7.5 99 523-630 11-115 (276)
237 TIGR01109 Na_pump_decarbB sodi 23.5 9.8E+02 0.021 26.1 18.9 83 37-125 5-93 (354)
238 PRK04148 hypothetical protein; 23.4 1.2E+02 0.0026 28.5 4.3 36 528-563 79-114 (134)
239 KOG1965 Sodium/hydrogen exchan 23.2 1.5E+02 0.0034 34.5 5.9 68 310-379 103-180 (575)
240 cd06274 PBP1_FruR Ligand bindi 23.0 5.5E+02 0.012 26.1 9.9 108 508-642 14-123 (264)
241 COG2117 Predicted subunit of t 23.0 82 0.0018 30.4 3.1 32 609-644 2-33 (198)
242 TIGR00841 bass bile acid trans 22.9 7.9E+02 0.017 26.1 11.1 50 313-362 14-67 (286)
243 KOG2722 Predicted membrane pro 22.7 1.8E+02 0.0039 32.0 5.9 68 297-364 39-107 (408)
244 PRK12738 kbaY tagatose-bisphos 22.5 2.8E+02 0.0062 29.6 7.4 98 523-629 16-119 (286)
245 cd01992 PP-ATPase N-terminal d 21.9 5.4E+02 0.012 24.8 9.1 95 442-561 1-106 (185)
246 TIGR00250 RNAse_H_YqgF RNAse H 21.9 2.2E+02 0.0048 26.4 5.8 60 537-599 34-93 (130)
247 TIGR00268 conserved hypothetic 21.7 1.2E+02 0.0026 31.6 4.5 34 607-644 12-45 (252)
248 PF04018 DUF368: Domain of unk 21.6 9.5E+02 0.021 25.2 16.0 43 24-68 54-96 (257)
249 PF03977 OAD_beta: Na+-transpo 21.6 1.1E+03 0.024 25.8 24.6 88 34-123 4-97 (360)
250 TIGR00659 conserved hypothetic 21.5 9E+02 0.02 24.9 17.9 75 97-180 66-141 (226)
251 cd01997 GMP_synthase_C The C-t 21.3 5.2E+02 0.011 27.8 9.2 33 609-644 1-33 (295)
252 COG3748 Predicted membrane pro 20.8 7.8E+02 0.017 26.7 9.9 38 309-346 226-265 (407)
253 PRK10712 PTS system fructose-s 20.8 1E+03 0.022 28.1 12.1 52 267-319 303-358 (563)
254 PF02844 GARS_N: Phosphoribosy 20.7 87 0.0019 27.8 2.6 23 538-560 49-71 (100)
255 PF02568 ThiI: Thiamine biosyn 20.5 5.5E+02 0.012 25.8 8.6 34 607-644 3-36 (197)
256 PRK09195 gatY tagatose-bisphos 20.4 3.2E+02 0.0068 29.2 7.3 71 523-600 16-86 (284)
257 TIGR03136 malonate_biotin Na+- 20.4 1.2E+03 0.026 25.9 23.4 253 30-330 20-301 (399)
258 TIGR03679 arCOG00187 arCOG0018 20.3 4.8E+02 0.01 26.5 8.4 29 612-644 2-31 (218)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2e-149 Score=1331.84 Aligned_cols=765 Identities=47% Similarity=0.841 Sum_probs=689.4
Q ss_pred CcccccccccCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc-ccccccc
Q 040629 3 SNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKL 81 (786)
Q Consensus 3 ~~~c~~~~~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~ 81 (786)
+.+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|+ +.+.+.+
T Consensus 16 ~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~ 95 (832)
T PLN03159 16 SVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTI 95 (832)
T ss_pred CcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhc
Confidence 446996657899999999999999999999999999999999999999999999999999999999999999 8888889
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc--hHHHHH
Q 040629 82 FPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDP--SGCLFW 159 (786)
Q Consensus 82 fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~--~~~l~l 159 (786)
||.++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++++++++++.. . ..... ..++++
T Consensus 96 fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~-~~~~~~~~~~l~~ 173 (832)
T PLN03159 96 FPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-V-SRNVHQGTFILFL 173 (832)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccchhHHHHHH
Confidence 9988888999999999999999999999999999999999999999999999999988887743 2 11111 157899
Q ss_pred HHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHHHHHH
Q 040629 160 GLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPEN---APAAIISTIAFSLTCIYAVR 236 (786)
Q Consensus 160 g~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~r 236 (786)
|+++|+||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+.. .+|.++..+++++++.+++|
T Consensus 174 g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r 253 (832)
T PLN03159 174 GVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVR 253 (832)
T ss_pred HHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776544322 45667777788888889999
Q ss_pred HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHH
Q 040629 237 PGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLF 316 (786)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~Plf 316 (786)
|++.|+.++++++ ++.++.++.++++++++++++++.+|+|+++|||++|+++|+++.++++.+|++++++++|+|+|
T Consensus 254 ~~~~~~~r~~~~~--~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlF 331 (832)
T PLN03159 254 PGIWWIIRRTPEG--ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLF 331 (832)
T ss_pred HHHHHHHHhCcCC--CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77889999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhhhhcccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCCh
Q 040629 317 FAMCGIRTNVHKVH---NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHD 393 (786)
Q Consensus 317 F~~~G~~~d~~~l~---~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~ 393 (786)
|+++|+++|+..+. .|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++.+.|++++
T Consensus 332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~ 411 (832)
T PLN03159 332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD 411 (832)
T ss_pred HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence 99999999998876 466667778888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhccchhhhhhccccccccccCCCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEE
Q 040629 394 QEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCI 473 (786)
Q Consensus 394 ~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v 473 (786)
+.|++++++++++|.+++|++.++|+|+||+..|++|++|+.++++|+|||+|+|++++++++++|++++++++++|.++
T Consensus 412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~v 491 (832)
T PLN03159 412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI 491 (832)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccCCCchhhhhcccCCCcccc-cCCCCCcchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCc
Q 040629 474 FALHLVELRGSASAVLIVHTSSKNSAYK-RVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHI 552 (786)
Q Consensus 474 ~~lhlvel~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~a 552 (786)
|++||+|+++|++|++++|+.+++..+. ++...++|+++++|+.|++++++++|+++|++||+++||+|||++|+|+++
T Consensus 492 y~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~ 571 (832)
T PLN03159 492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV 571 (832)
T ss_pred EEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence 9999999999999999999876443221 122345899999999999753589999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC----CCCcceEEEEecccCcChHHHHHHHH
Q 040629 553 AFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS----DNGRMQHVVMVFIGGPDDREALALAW 628 (786)
Q Consensus 553 dlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~----~~~~~~~I~v~f~Gg~ddreAL~~A~ 628 (786)
|+||+||||+|+.||++++.+..+|.+|+|||++||||||||||||..+. .....+||+++|+|||||||||+||+
T Consensus 572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~ 651 (832)
T PLN03159 572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW 651 (832)
T ss_pred CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997632 12456799999999999999999999
Q ss_pred HHhcCCCeEEEEEEeec-cCCCCc-c-----ccccccc-c-ccCcchhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHH
Q 040629 629 RMSANPSVQLTVLRLHS-RYNNNV-K-----EEDIRYS-K-CIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREE 699 (786)
Q Consensus 629 rma~~~~~~ltvv~~~~-~~~~~~-~-----~~~~~~~-~-~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e 699 (786)
|||+||++++||+||++ +...+. + .++..+. . ..++.|+++||++++|||.++.+++++.|+|++|+|++|
T Consensus 652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e 731 (832)
T PLN03159 652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE 731 (832)
T ss_pred HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence 99999999999999993 221100 0 0000011 1 112678899999999999999888999999999999999
Q ss_pred HHHHHHHhhhcCccEEEEccC-CCCcccccccCCcCCCCccccchhhhhcCCCC-CccEEEEeeecCCCCCCCcc
Q 040629 700 TTGALREMELQKVGLYIVGRE-VMASAATADLLGWSECPEIGAIGDLLVYSDFI-RASVLVVQHYPGDDGEVGAV 772 (786)
Q Consensus 700 ~~~~i~~~~~~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG~igd~las~~~~-~~svLvvqq~~~~~~~~~~~ 772 (786)
|++++|++ +++|||+||||+ +.++++|+||+||+||||||+|||+|||+||. ++||||||||+....+-++.
T Consensus 732 ~~~~l~~~-~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~~~~~~~~ 805 (832)
T PLN03159 732 TVAAIRSM-DSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGPQPDDL 805 (832)
T ss_pred HHHHHHHh-hccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccCCCCcccC
Confidence 99999999 878999999998 55689999999999999999999999999999 99999999998754444433
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-121 Score=1072.94 Aligned_cols=746 Identities=42% Similarity=0.725 Sum_probs=680.4
Q ss_pred ccccCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc-cccccccccCCch
Q 040629 9 LNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSV 87 (786)
Q Consensus 9 ~~~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~ 87 (786)
+++.++.|.|.|+||++|++|++++|++++++++++++.++||+|||++++|+++||++||+.+|+ +.+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 346789999999999999999999999999999999999999999999999999999999999999 8999999998899
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc-----hHHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDP-----SGCLFWGLT 162 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~-----~~~l~lg~~ 162 (786)
..+++++.+|+.+++|+.|+|+|.+.++|.+|++..+|+.++++|+..|..+...+........+. +...++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887775332111111 156888899
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c--hHHHHHHHHHHHHHHHHHHHHH
Q 040629 163 LTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPE--N--APAAIISTIAFSLTCIYAVRPG 238 (786)
Q Consensus 163 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~v~r~~ 238 (786)
+|.|+||+++++|.|+|++++++||+++++++++|+++|.++++..+...... . +.|.++..+++++++.+++||.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 99999999999999999999999999999999999999999888887765543 2 5788888899999999999999
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-chhHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHH
Q 040629 239 LEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTG-TFSIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLF 316 (786)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g-~~~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~Plf 316 (786)
+.|+.||+|++ +|.++.+...+++.++.++.+++.++ .|+++|||+.|+++|+ +|+++.+.+|+|++.+++|+|+|
T Consensus 242 ~~wi~kr~pe~--~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~ 319 (769)
T KOG1650|consen 242 MKWIIKRTPEG--KPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLY 319 (769)
T ss_pred HHHHhhcCCCC--CccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999998 8999999999999999 99999999999999999999999
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhH
Q 040629 317 FAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEY 396 (786)
Q Consensus 317 F~~~G~~~d~~~l~~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~ 396 (786)
|+.+|+++|+..+..|......+...+++|++++..++.++|+|++|++++|++|++||.+++..++.+.+.|.++++.|
T Consensus 320 ~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f 399 (769)
T KOG1650|consen 320 FAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGF 399 (769)
T ss_pred HHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchH
Confidence 99999999998887777778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccchhhhhhccccccccccCCCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEE
Q 040629 397 AVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFAL 476 (786)
Q Consensus 397 ~~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~l 476 (786)
++++++++++|.+++|++..+|+|.+++..|++|++++.+++.++|++.|+|++++.++++++++++.+++++|.+++++
T Consensus 400 ~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~l 479 (769)
T KOG1650|consen 400 TVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYAL 479 (769)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988779999999
Q ss_pred EeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhcC-CceEEEEeEEecCCCChHHHHHHHHhhcCccEE
Q 040629 477 HLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENRS-TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFM 555 (786)
Q Consensus 477 hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlI 555 (786)
|++|+.+|+.|++++|+.++++.. +.....+|++..+|+.|++.. ..+.++++|+++|+++||||||.+|.++++++|
T Consensus 480 hlveL~~~~~~~li~h~~~~~~~~-~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~li 558 (769)
T KOG1650|consen 480 HLVELVGRATPLLISHKLRKNGRV-ESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLI 558 (769)
T ss_pred eeeecccccchhhhhhhhcccccc-ccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEE
Confidence 999999999999999987665321 223345679999999999854 679999999999999999999999999999999
Q ss_pred EEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCC----CCCCcceEEEEecccCcChHHHHHHHHHHh
Q 040629 556 ILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGK----SDNGRMQHVVMVFIGGPDDREALALAWRMS 631 (786)
Q Consensus 556 Ilp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~----~~~~~~~~I~v~f~Gg~ddreAL~~A~rma 631 (786)
++||||+|+.+|..++.+..+|++|++|+++|||||||++|||... ......++|+++|.||+||||||++++||+
T Consensus 559 ilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~ 638 (769)
T KOG1650|consen 559 ILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMA 638 (769)
T ss_pred EeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHHHHh
Confidence 9999999996668999999999999999999999999999998211 112367899999999999999999999999
Q ss_pred cCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHH-HhhcCCCCceEEE-EEEeCChHHHHHHHHHhhh
Q 040629 632 ANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEF-RLQTAGEHNVNYY-EKVVNNREETTGALREMEL 709 (786)
Q Consensus 632 ~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~v~~~-e~~v~~~~e~~~~i~~~~~ 709 (786)
+||++++||+|+++++... +. ...+++++.+|++..+++ +.....+.++.|. |+.|.++.||.+++|++ .
T Consensus 639 ~~~~v~lTVirf~~~~~~~--~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~-~ 710 (769)
T KOG1650|consen 639 ENPRVTLTVIRFFPDESKY--NR-----KVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSI-T 710 (769)
T ss_pred hCCceEEEEEEeeccchhh--cc-----cccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHh-c
Confidence 9999999999999433210 00 001167888888888888 6566566678888 69999999999999999 7
Q ss_pred cCccEEEEccC-CCCcccccccCCcCCCCccccchhhhhcCCCC-CccEEEEeeecCC
Q 040629 710 QKVGLYIVGRE-VMASAATADLLGWSECPEIGAIGDLLVYSDFI-RASVLVVQHYPGD 765 (786)
Q Consensus 710 ~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG~igd~las~~~~-~~svLvvqq~~~~ 765 (786)
++|||++|||+ +++++.++|+++|+||||||+|||.|+|+||. +.||||+|||.+.
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 79999999998 88999999999999999999999999999999 9999999999763
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.7e-46 Score=435.96 Aligned_cols=411 Identities=18% Similarity=0.205 Sum_probs=331.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 040629 30 LLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEM 109 (786)
Q Consensus 30 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~ 109 (786)
.++.++.+++.++.++..++||+|+|+++||+++|+++||+++|. + +..+.++.++++|++++||.+|+|+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~------i---~~~~~i~~laelGvv~LlF~iGLEl 75 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRL------V---TDVESILHFAEFGVVLMLFVIGLEL 75 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccC------C---CCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 488999999999999999999999999999999999999999987 1 2345689999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHH
Q 040629 110 DVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLA 189 (786)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 189 (786)
|++.+|+.+|+++.+|..++++|+++++.++++++ .+|. .++++|.+++.||++++.++++|+|+++++.||.+
T Consensus 76 ~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g-----~~~~-~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~ 149 (621)
T PRK03562 76 DPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLG-----LRWQ-VALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSA 149 (621)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHH-HHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 99999999999999999999999988887766653 2344 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-C---chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 040629 190 TSIAMISDVCSWILVAVVLPIRSSP-E---NAPA-AIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLI 264 (786)
Q Consensus 190 ls~a~i~D~~~~~ll~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~ 264 (786)
++.++++|+.+|++++++..+...+ . ...| ..+..++++++.+++.|++++++.++..+. + .+|.+...+++
T Consensus 150 l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~-~~e~~~~~~l~ 226 (621)
T PRK03562 150 FAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS--G-LREVFTAVALF 226 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-CchHHHHHHHH
Confidence 9999999999999998876654321 1 1222 222222333333333344444444433222 2 56788888899
Q ss_pred HHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHH
Q 040629 265 GVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTC 343 (786)
Q Consensus 265 ~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~ 343 (786)
++++++++++.+|+|+.+|||++|++++++++++++.++++++. ++|+|+||+++|+++|+..+. .|+.++.++++.+
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~ 305 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFL 305 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999997 999999999999999998887 6666667777889
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 344 FCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 344 ~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++++++ .|.+.+|++..+|++...
T Consensus 306 ~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~-lS~~~tP~l~~~~~~~~~ 384 (621)
T PRK03562 306 AIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVA-LSMAATPLLLVLLDRLEQ 384 (621)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987554 466666777666654321
Q ss_pred hhhccccccccccCCCcceEEEEEcCCCchhhHHHHHhh
Q 040629 424 IIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLEL 462 (786)
Q Consensus 424 ~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~~ 462 (786)
. +..+...+...++.+.|+++|-++.- ...+.+.++.
T Consensus 385 ~-~~~~~~~~~~~~~~~~~vII~G~Gr~-G~~va~~L~~ 421 (621)
T PRK03562 385 S-RTEEAREADEIDEQQPRVIIAGFGRF-GQIVGRLLLS 421 (621)
T ss_pred H-HhhhcccccccccccCcEEEEecChH-HHHHHHHHHh
Confidence 1 11101101111223578999988766 4544444443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=429.16 Aligned_cols=411 Identities=16% Similarity=0.181 Sum_probs=335.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccC
Q 040629 31 LIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMD 110 (786)
Q Consensus 31 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d 110 (786)
++..+.++++++.+++.++||+|+|.+++||++|+++||+++|. ++ ..+.++.++++|++|+||.+|+|+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~-------~~--~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGF-------VA--DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccc-------cc--chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 34567888999999999999999999999999999999999887 21 2467899999999999999999999
Q ss_pred hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHH
Q 040629 111 VNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLAT 190 (786)
Q Consensus 111 ~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l 190 (786)
++.+|+.++.....+..++++|+.+++++++.+.. ++. .++++|+++|.||++++.++++|+|+++++.||+++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-----SLM-TGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHH-HHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHH
Confidence 99999998877777888888898888876655532 223 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCC-c-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHH
Q 040629 191 SIAMISDVCSWILVAVVLPIRS---SPE-N-------APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYL 259 (786)
Q Consensus 191 s~a~i~D~~~~~ll~~~~~~~~---~~~-~-------~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 259 (786)
++++++|+.+|+++.+...+.. ++. + ..+.++..++++++..++.|++..|+.++.++. + .+|.+.
T Consensus 152 ~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~e~~~ 228 (558)
T PRK10669 152 GWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAAT--G-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-CchHHH
Confidence 9999999999999887765432 111 1 123344566677777888999999999998765 4 678888
Q ss_pred HHHHHHHHHHHHH-HHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHH
Q 040629 260 CFFLIGVVICSFV-TEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGF 337 (786)
Q Consensus 260 ~~il~~~l~~~~~-a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ 337 (786)
..++++++++++. ++.+|+|+++|||++|+++|+++.++++.+...++. ++|+|+||+++|+++|+..+. .+..++.
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~-~~f~plFFv~~G~~~d~~~l~~~~~~~~~ 307 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLR-DAFAVLFFVSVGMLFDPMILIQQPLAVLA 307 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHH-HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 8888888888764 699999999999999999999888888888887775 889999999999999998877 5555566
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 338 VIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 338 ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|++++++++++++++|++.++.
T Consensus 308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778999999999999999999999999999999999999999999999999999999999999988888877777665
Q ss_pred ccchhhhhhcccc----cccc---ccCCCcceEEEEEcCCCchhhHHHHHhhhc
Q 040629 418 YRSSTRIIKYKGR----SIQR---AKQGAELRILACVHGVGNVLGTINLLELSN 464 (786)
Q Consensus 418 ~~~~~~~~~~~~r----~i~~---~~~~~e~riLv~v~~~~~~~~li~L~~~~~ 464 (786)
.+..++..+.+++ ..++ .+++.+.|+++|-+++- ... +++.+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~-G~~---la~~L~ 437 (558)
T PRK10669 388 ERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRV-GSL---LGEKLL 437 (558)
T ss_pred hHHHHHhhhccccccccccccccccccccCCCEEEECCChH-HHH---HHHHHH
Confidence 4432222111111 1111 12234578999988765 343 444444
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.6e-45 Score=428.94 Aligned_cols=411 Identities=16% Similarity=0.233 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 040629 30 LLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEM 109 (786)
Q Consensus 30 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~ 109 (786)
.++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|. .+ ..+.+..++++|++++||.+|+|+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~-------i~--~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGF-------IS--DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccC-------CC--cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357788899999999999999999999999999999999999987 22 235688999999999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHH
Q 040629 110 DVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLA 189 (786)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 189 (786)
|++.+|+.+|+++.+|..++++|+++++.+.++++ .+|. .++++|++++.||++++.++|+|+|+++++.||++
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g-----~~~~-~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~ 149 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTD-----FSWQ-AAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLG 149 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHH
Confidence 99999999999999999999999987776655442 2343 78889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHH
Q 040629 190 TSIAMISDVCSWILVAVVLPIRSSPEN--APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVV 267 (786)
Q Consensus 190 ls~a~i~D~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l 267 (786)
++..+++|+.++++++++..+...... .....+..++.++..+++.|++.+++.++..+ .+.+|.++..++++++
T Consensus 150 l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~l~~vl 226 (601)
T PRK03659 150 FSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAA---SGVREVFTAAALLLVL 226 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHH
Confidence 999999999999999887665533222 11121111112222222334444444443322 2257888888999999
Q ss_pred HHHHHHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHH
Q 040629 268 ICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCK 346 (786)
Q Consensus 268 ~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K 346 (786)
+++++++.+|+|+.+|||++|+++++++.++++.++++++. ++|+|+||+++|+++|+..+. .|+.++.++++.+++|
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K 305 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVK 305 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999997 999999999999999998887 7777777778889999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhccc--hhhh
Q 040629 347 ILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRS--STRI 424 (786)
Q Consensus 347 ~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~--~~~~ 424 (786)
++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |.+.+|++.++|+| .+++
T Consensus 306 ~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~~~~~~~ 384 (601)
T PRK03659 306 GLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDKWLARRL 384 (601)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999666655 55667887777765 3333
Q ss_pred hhccccccccccCCCcceEEEEEcCCCchhhHHHHHh
Q 040629 425 IKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLE 461 (786)
Q Consensus 425 ~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~ 461 (786)
....+....+...+.+.|+++|-+++- ...+.+.++
T Consensus 385 ~~~~~~~~~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (601)
T PRK03659 385 NGPEEEDEKPWVEDDKPQVIIVGFGRF-GQVIGRLLM 420 (601)
T ss_pred ccccccccccccccccCCEEEecCchH-HHHHHHHHH
Confidence 211110000111123568999888765 444445444
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=397.95 Aligned_cols=376 Identities=24% Similarity=0.387 Sum_probs=326.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhc
Q 040629 29 PLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLE 108 (786)
Q Consensus 29 ~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle 108 (786)
...+.|+.++++++.+.+.++||+|+|+++||+++|+++||..++. ..+..+.++.++++|++++||.+|+|
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~--------~~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLL--------IIESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccc--------cCCchHHHHHHHHHhHHHHHHHHHHC
Confidence 3578899999999999999999999999999999999999954433 34567899999999999999999999
Q ss_pred cChhHHHhcchh-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 040629 109 MDVNSIKSSSKR-ELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGR 187 (786)
Q Consensus 109 ~d~~~l~~~~~~-~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 187 (786)
+|++.+||.+|+ ....+..++..|+.++....+. .. +.++. .++++|.+++.||.++++++++|+|.++++.|+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---g~~~~-~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~ 151 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLG-IL---GLSLI-AALFLGAALALSSTAIVLKILMELGLLKTREGQ 151 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH-Hh---ccChH-HHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999 8888888888888888655443 11 22333 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHH
Q 040629 188 LATSIAMISDVCSWILVAVVLPIRSSPEN----APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFL 263 (786)
Q Consensus 188 l~ls~a~i~D~~~~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il 263 (786)
+++++++++|+.++++++++..+..++.. .+.......++.++..+..|++..|+.|+..+. +.+|..+..++
T Consensus 152 ~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~---~~~e~~~~~~l 228 (397)
T COG0475 152 LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT---ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHH
Confidence 99999999999999999999988765543 233344556666666666788888888887653 26788999999
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchh-HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHH
Q 040629 264 IGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLG-ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIIL 341 (786)
Q Consensus 264 ~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~-~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~ 341 (786)
++++.+++++|.+|+|.++|||++|+++++.+.+ ++++++++++.+++|+|+||+.+|+++|+..+. ++..++.++.+
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~ 308 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVAL 308 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999997777 799999999998899999999999999999998 77778888999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhccch
Q 040629 342 TCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSS 421 (786)
Q Consensus 342 ~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~ 421 (786)
..++|.+++++.++..|.+.+++...|+.+.++|+++++.++.+.. +.++++.++..+.+++++|.+.+++.+.+++..
T Consensus 309 ~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 309 AILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887 688888998888888787777776666666543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.2e-39 Score=378.70 Aligned_cols=376 Identities=15% Similarity=0.140 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 040629 28 IPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGL 107 (786)
Q Consensus 28 l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gl 107 (786)
+..++++++++++++.+++.+++|+++|.+++++++|+++||+++|. .+.++.+..+.++++|+++++|..|+
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~-------i~~~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGG-------IQFDNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCC-------cccCcHHHHHHHHHHHHHHHHHcCcc
Confidence 44678899999999999999999999999999999999999999986 11134578899999999999999999
Q ss_pred ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCc-cCChhH
Q 040629 108 EMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKL-LQTDIG 186 (786)
Q Consensus 108 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l~s~~g 186 (786)
|+|++.+|+.+++++.+++.++++|++++...++++. +.+|. .++++|+++++||++++.++++|.|+ ++++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~----g~~~~-~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~ 151 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL----GLDWL-EGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVA 151 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHH-HHHHHhhhhccCchHHHHHHHhccCCCcchhHH
Confidence 9999999999999999999999999988655554443 23444 89999999999999999999999995 699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHH
Q 040629 187 RLATSIAMISDVCSWILVAVVLPIRSSPE-N-A---PAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCF 261 (786)
Q Consensus 187 ~l~ls~a~i~D~~~~~ll~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (786)
+++.++|.+||.++++++.++..+...+. . . ++.++..+++.++..++.++++.|+.++.+.. .++.+..+
T Consensus 152 ~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~----~~~~~~i~ 227 (562)
T PRK05326 152 STLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP----AEGLYPIL 227 (562)
T ss_pred hHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hhhHHHHH
Confidence 99999999999999998887776554332 1 1 22334455556666678888999999887432 35577888
Q ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-H-HHHHHHH
Q 040629 262 FLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-N-WFLAGFV 338 (786)
Q Consensus 262 il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~-~~~~~~i 338 (786)
+++++++++++++.+|.|+++|+|++|+++++ ++..+...+++.+...+++.|+||+++|+.+|++.+. . +..+.+.
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~ 307 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 4333344455555555899999999999999998876 3 3333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCCh-hhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 339 IILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHD-QEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 339 i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~-~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
+++.+++|+++++++.+.+++++||+..+|| .++||.++++++..+...++.+. ..|+++.+++++++.+.++.++.+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 5567899999999999999999999999999 48999999999999999998864 567888788888888877777776
Q ss_pred ccc
Q 040629 418 YRS 420 (786)
Q Consensus 418 ~~~ 420 (786)
.++
T Consensus 387 a~~ 389 (562)
T PRK05326 387 ARK 389 (562)
T ss_pred HHH
Confidence 543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.4e-39 Score=360.89 Aligned_cols=369 Identities=24% Similarity=0.426 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 040629 38 IITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSS 117 (786)
Q Consensus 38 il~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~ 117 (786)
+++.+.+.+.++||+++|.+++|+++|+++||.+++. +.| + ....+.++++|+.+++|.+|+|+|.+.+||+
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~------~~~-~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~ 75 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGL------LEP-D-NPSFELLAEIGLAFLLFEAGLELDIKELRRN 75 (380)
T ss_dssp ----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhh------ccc-h-hhHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4445666666899999999999999999999998775 111 1 4678899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHH
Q 040629 118 SKRELNIAAAGALIPMGV-GAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMIS 196 (786)
Q Consensus 118 ~~~~~~ia~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~ 196 (786)
+|+++.+++.++++|+.+ ++.+++++.. . +.++. .++++|.++++||++++.++++|.+..+++.++++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~ 152 (380)
T PF00999_consen 76 WRRALALGLVGFLLPFILVGFLLSFFLFI-L-GLSWA-EALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIN 152 (380)
T ss_dssp -----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTT
T ss_pred cccccccccceeeehhhHHHHHHHHhhcc-c-hhhhH-HHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhh
Confidence 999999999999999998 6666543211 1 22333 899999999999999999999898888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 040629 197 DVCSWILVAVVLPIRSSP-ENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEV 275 (786)
Q Consensus 197 D~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~ 275 (786)
|+++++++.+........ ....+.....++..+....+.+....|+.++..+.. ++.++.+...+++.++..++++|.
T Consensus 153 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~a~~ 231 (380)
T PF00999_consen 153 DIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA-SPSSEIFILLVLALILLLYGLAEI 231 (380)
T ss_dssp TTTTTTTT------------------------------------------------------------------------
T ss_pred ccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc-cccchhhHHHHHHHHhhhcccccc
Confidence 999999998887765221 122232222223333333344444444444432220 135778889999999999999999
Q ss_pred hCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchh---h-HHHHHHHHHHHHHHHHHHHHH
Q 040629 276 TGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKV---H-NWFLAGFVIILTCFCKILGTL 351 (786)
Q Consensus 276 ~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l---~-~~~~~~~ii~~~~~~K~i~~~ 351 (786)
+|.|+++|+|++|+++++.+.++++.++++++.++++.|+||+++|+++|++.+ . .|...+.+.+..+++|+++++
T Consensus 232 ~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~ 311 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVY 311 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceee
Confidence 999999999999999999888888999999999999999999999999998887 3 566677777778899999999
Q ss_pred HHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 040629 352 LVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMY 418 (786)
Q Consensus 352 l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~ 418 (786)
+.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 312 LASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp -----------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998888888877777654
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=2.1e-34 Score=305.98 Aligned_cols=267 Identities=22% Similarity=0.330 Sum_probs=229.8
Q ss_pred HHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcch
Q 040629 40 TITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSK 119 (786)
Q Consensus 40 ~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~ 119 (786)
+++.+.+.++||+|+|.+++++++|+++||+.+|. .+ ..+.++.++++|+++++|.+|+|+|++.+||++|
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~-------i~--~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~ 72 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGL-------IS--NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK 72 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccC-------CC--ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46778899999999999999999999999998886 11 3357999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHH
Q 040629 120 RELNIAAAGALIP-MGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDV 198 (786)
Q Consensus 120 ~~~~ia~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~ 198 (786)
++..++..++++| +.++..+.+++. .++. .++++|++++.||++++.++++|+|+.+++.|+++++++++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 73 AAFGVGVLQVLVPGVLLGLLLGHLLG-----LALG-AAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHH-HHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 9999999999999 666665555543 2333 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 040629 199 CSWILVAVVLPIRSSPEN----APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTE 274 (786)
Q Consensus 199 ~~~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~ 274 (786)
++++++.+...+..++.. ..+.+...+++.++...+.++...|+.|+.++. + ..|.+...++.+++..++++|
T Consensus 147 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 147 AVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL--R-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C-CchHHHHHHHHHHHHHHHHHH
Confidence 999999988776543221 223333444455556678888999999988765 4 457888899999999999999
Q ss_pred HhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcc
Q 040629 275 VTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTN 325 (786)
Q Consensus 275 ~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d 325 (786)
.+|.|+++|||++|+++++.+.++++.++++++. ++|.|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSESEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999999666888999999999 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=276.88 Aligned_cols=374 Identities=18% Similarity=0.268 Sum_probs=304.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHH
Q 040629 24 LFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIF 103 (786)
Q Consensus 24 l~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF 103 (786)
|+|+.|++ ..+..-+..+.+++.+..|+++|+.+||+++|++.||...|. ..+......++++|++++||
T Consensus 1 m~h~tpli-~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGF---------vad~~La~~LAelGViLLmF 70 (408)
T COG4651 1 MHHDTPLI-TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGF---------VADQTLAPELAELGVILLMF 70 (408)
T ss_pred CCCCchHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCc---------ccchhHHHHHHHhhHHHHHH
Confidence 34555644 335566778889999999999999999999999999988776 12345566999999999999
Q ss_pred HHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCch-HHHHHHHHHhhccHHHHHHHHHhcCccC
Q 040629 104 LIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPS-GCLFWGLTLTVTGFPAVTWILGELKLLQ 182 (786)
Q Consensus 104 ~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~-~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 182 (786)
-+|++.+++++.....-++--++.++.+-..++..+.+.+. |+. ..+.+|.++|..|+.+..|-++|.++.+
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lg-------ws~~~glvfGlaLS~aSTVvllraLqEr~lid 143 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLG-------WSFGTGIVFGLALSVASTVVLLRALEERQLID 143 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcC-------CCcccceeeeehhhhHHHHHHHHHHHHhcccc
Confidence 99999999999876554443444444444444554444443 332 6789999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-c------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 040629 183 TDIGRLATSIAMISDVCSWILVAVVLPIRSS---PE-N------A-PAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNN 251 (786)
Q Consensus 183 s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~---~~-~------~-~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~ 251 (786)
++.||++++.-+++|+..++.+.+..++++. +. . . .+.+.+...|++++.++.|....|+..+....
T Consensus 144 t~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-- 221 (408)
T COG4651 144 TQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-- 221 (408)
T ss_pred ccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9999999999999999999888877665432 11 1 1 23455788899999999999999999887543
Q ss_pred CCCChhHHHHHHHHHHHHHH-HHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh
Q 040629 252 NAYSDSYLCFFLIGVVICSF-VTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH 330 (786)
Q Consensus 252 ~~~~~~~~~~il~~~l~~~~-~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~ 330 (786)
. .+|.+...+++.+++.++ .++.+|+++.+|||++|+++.+++..++..+..-++. +.|.-+||+++||..|+..+.
T Consensus 222 G-srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~ 299 (408)
T COG4651 222 G-SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILI 299 (408)
T ss_pred C-cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhh
Confidence 3 788999999999998876 5678999999999999999999999999888888888 888999999999999987776
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHh
Q 040629 331 -NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGG 409 (786)
Q Consensus 331 -~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i 409 (786)
....++....+...+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++.+. ---++++.-+.+++
T Consensus 300 ~~pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~-gr~LvlagailsIl 378 (408)
T COG4651 300 QQPLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEA-GRDLVLAGAILSIL 378 (408)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHH-HHHHHHHHHHHHHH
Confidence 4445566667778899999999999999999999999999999999999999999999999954 44455666677788
Q ss_pred HHHHHHhhcc
Q 040629 410 VAPIISTMYR 419 (786)
Q Consensus 410 ~~plv~~l~~ 419 (786)
..|+.....+
T Consensus 379 ~nPllf~~~d 388 (408)
T COG4651 379 LNPLLFALLD 388 (408)
T ss_pred HhHHHHHHHH
Confidence 8888766544
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=3.2e-27 Score=271.11 Aligned_cols=361 Identities=13% Similarity=0.117 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHH
Q 040629 36 AFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIK 115 (786)
Q Consensus 36 ~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~ 115 (786)
..+++++.....+++|+++|.+++++++|+++||...+. . ++.+ . +.+..+++.+++|..|+++|++.+|
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-~-----~~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-E-----VPLD-R---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-C-----CCCC-H---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344555666778899999999999999999999864332 0 1111 1 2345589999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHH
Q 040629 116 SSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMI 195 (786)
Q Consensus 116 ~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i 195 (786)
++++.+..+++.++++|++++....+++. +.+|. .++++|+++|+|+++++.+++++.++ ++++.+++.++|++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~----~l~~~-~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESll 147 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWIL----GIPLA-LALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLL 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHH-HHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhh
Confidence 99999999999999999888776666532 23444 89999999999999999999999887 88999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-CCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 040629 196 SDVCSWILVAVVLPIRSS-PENA----PAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICS 270 (786)
Q Consensus 196 ~D~~~~~ll~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~ 270 (786)
||..+++++.+...+..+ +..+ .+.++..++..++.++++..+..|+.++..+ .+.....++++++++++
T Consensus 148 ND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~-----~~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 148 NDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID-----DPLVEIALTILAPFAGF 222 (525)
T ss_pred cchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHH
Confidence 999999999988876643 2222 2223333333444445556666666655432 24456788889999999
Q ss_pred HHHHHhCchhHHHHHHHhHhcCC-Cch---hHH---HHHHHHHHHHHhhHHHHHHHhhhhcccchhhHH-----------
Q 040629 271 FVTEVTGTFSIVGAFVFGIIMPD-RDL---GAL---LFERFADFVSGIMLPLFFAMCGIRTNVHKVHNW----------- 332 (786)
Q Consensus 271 ~~a~~~g~~~~lgafvaGl~~~~-~~~---~~~---l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~~~----------- 332 (786)
+++|.+|.|+++++|++|+++++ .+. ..+ ..+.+......++.+++|+++|++++......|
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999998 332 122 223444455588999999999999873111111
Q ss_pred -HH---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHhhhhhhHHHHHhhcccc----------CCCC
Q 040629 333 -FL---AGFVIILTCFCKILGTLLVS--HS-----YHMPLQDRLALGVLMNTKGILAVVVLNLGWD----------KKVL 391 (786)
Q Consensus 333 -~~---~~~ii~~~~~~K~i~~~l~~--~~-----~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~----------~~~i 391 (786)
.. .+++.....+.|++..+... ++ .+++||+.+.++| .+.||.++++++..... +..+
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 00 11222233445655433321 11 2578999999999 69999999998864321 1222
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 040629 392 HDQEYAVMVIAIVIMTGGVAPIISTMY 418 (786)
Q Consensus 392 ~~~~~~~lvl~~vv~t~i~~plv~~l~ 418 (786)
-.-.+.+++++.++.+...||+++++-
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 233455555666666666677777753
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=4.8e-27 Score=269.86 Aligned_cols=358 Identities=15% Similarity=0.143 Sum_probs=263.3
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhhCccCCCccccccccccCC----chhHHH
Q 040629 17 IWPSKNPLFEPIPLLIVQLAFIITITRSLYFILR-PLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVR----SVTTLE 91 (786)
Q Consensus 17 ~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~-rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~----~~~~l~ 91 (786)
.|..-++-+.++ .++-++..+++..++..+++ |+.+|..+.++++|+++||.++|. +-|.+ ....++
T Consensus 2 ~w~~l~~~~~~l--~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~------idP~~~g~~d~i~le 73 (810)
T TIGR00844 2 IWEQLEVTKAHV--AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNW------FNPLSWGNTDSITLE 73 (810)
T ss_pred Ccccccccchhh--HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhcc------CChhhcccchHHHHH
Confidence 355545544443 33334444444444555555 999999999999999999998887 21211 223344
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHH
Q 040629 92 TVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAV 171 (786)
Q Consensus 92 ~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv 171 (786)
++++++.+.+|.+|++++.+.+++.++..+.+++.++.+++++++++++++... .+|. .++++|+++++|++...
T Consensus 74 -IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~G---L~~~-~ALLLGAILAPTDPVLA 148 (810)
T TIGR00844 74 -ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPG---LNFP-ASLLMGACITATDPVLA 148 (810)
T ss_pred -HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHH-HHHHHHhhhcCCcHHHH
Confidence 999999999999999999999999999999999999999999988888877532 2444 89999999999998777
Q ss_pred HHHHH---hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCc----h-HHHHHHHHHHHHHHHHHHHHHHH
Q 040629 172 TWILG---ELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSS---PEN----A-PAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 172 ~~iL~---el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~---~~~----~-~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
..+++ ..+ ++.++..++.+++.+||.++++++.+.+.+... +.. . ...++..+++.+++.++++.+..
T Consensus 149 ssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~ 227 (810)
T TIGR00844 149 QSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGR 227 (810)
T ss_pred HHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776 234 478899999999999999999887766554421 111 1 12333444445555556666666
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-CchhHH-HHHHHHHHHHHhhHHHHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDLGAL-LFERFADFVSGIMLPLFFA 318 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~~~~-l~~~l~~~~~~l~~PlfF~ 318 (786)
|+.++..+.. .-..+.++.+.++++++++.+++.+|.++++++|+||+++.+ .....+ -...+......++..++|+
T Consensus 228 ~Ll~~l~rr~-~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFV 306 (810)
T TIGR00844 228 KAIRFAEGKN-IIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFV 306 (810)
T ss_pred HHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHH
Confidence 6665543220 112455677778888889999999999999999999999998 432222 2334556677889999999
Q ss_pred Hhhhhcccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhhhHHHHHhhccccCC
Q 040629 319 MCGIRTNVHKVH-------NWFLAGFVIILTCFCKILGTLLVSHSY--HMPLQDRLALGVLMNTKGILAVVVLNLGWDKK 389 (786)
Q Consensus 319 ~~G~~~d~~~l~-------~~~~~~~ii~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~ 389 (786)
++|+.+....+. .|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..++.++.++.+.+
T Consensus 307 lLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~ 385 (810)
T TIGR00844 307 YLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQL 385 (810)
T ss_pred HHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhh
Confidence 999999765542 466667777788889998888765544 468999999999 7999999999999887765
Q ss_pred C
Q 040629 390 V 390 (786)
Q Consensus 390 ~ 390 (786)
.
T Consensus 386 ~ 386 (810)
T TIGR00844 386 E 386 (810)
T ss_pred h
Confidence 4
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9e-24 Score=236.07 Aligned_cols=376 Identities=16% Similarity=0.163 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 040629 30 LLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEM 109 (786)
Q Consensus 30 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~ 109 (786)
..+++..+++.++.....+.+|+..|.+...++.|++.||.+++. .+++....-+.+..+.+..++|..|+++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~-------~~~~~~~~~el~~~l~l~ilLf~~g~~l 78 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNL-------ISPDLELDPELFLVLFLAILLFAGGLEL 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcc-------ccccccCChHHHHHHHHHHHHHHhHhcC
Confidence 457788888899999999999999999999999999999988776 1111122233444899999999999999
Q ss_pred ChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHH
Q 040629 110 DVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLA 189 (786)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 189 (786)
|.+.+||+++....+++.+++++.+......+++.+.. ++. .++.+|+++|+|++.++.+++++.+. +.++.++.
T Consensus 79 ~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i---~~~-~a~l~gAilspTDPv~v~~i~~~~~v-p~ri~~iL 153 (429)
T COG0025 79 DLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI---PLA-AAFLLGAILSPTDPVAVSPIFKRVRV-PKRIRTIL 153 (429)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---hHH-HHHHHhHHhcCCCchhhHHHHhcCCC-CHHHHHHH
Confidence 99999999999999999999999888777777774321 222 89999999999999999999999775 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 040629 190 TSIAMISDVCSWILVAVVLPIRSS-PEN----APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLI 264 (786)
Q Consensus 190 ls~a~i~D~~~~~ll~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~ 264 (786)
.++|++||..+++++.++...... +.. ....++..++..+.+.++...+..|+.++..+.. -........+.+.
T Consensus 154 ~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~-~~~~~~~~~i~L~ 232 (429)
T COG0025 154 EGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG-WTSPLLETLLTLL 232 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccchHHHHHHHHH
Confidence 999999999999999988887653 221 1222333333333444444555555555543310 0124566788999
Q ss_pred HHHHHHHHHHHhCchhHHHHHHHhHhcC---C---Cchh-HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HHHHH
Q 040629 265 GVVICSFVTEVTGTFSIVGAFVFGIIMP---D---RDLG-ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NWFLA 335 (786)
Q Consensus 265 ~~l~~~~~a~~~g~~~~lgafvaGl~~~---~---~~~~-~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~~~~ 335 (786)
..+..+.++|.+|.|++++.+++|++.. . .+.. +...+.+....+.++.-+.|++.|++++..... .+..+
T Consensus 233 ~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~ 312 (429)
T COG0025 233 LAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGL 312 (429)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHH
Confidence 9999999999999999999999999773 2 2222 334444556666899999999999999988887 46777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHhhhhhhHHHHHhhccccC------CCCChhhHHHHHHHH
Q 040629 336 GFVIILTCFCKILGTLLVSHSYH------MPLQDRLALGVLMNTKGILAVVVLNLGWDK------KVLHDQEYAVMVIAI 403 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~------~~i~~~~~~~lvl~~ 403 (786)
++.++..+++|++++++..+..+ .+++|+++++| -++||.++++++...... ..+..-.+.+++.++
T Consensus 313 l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl 391 (429)
T COG0025 313 LVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSL 391 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHH
Confidence 88888999999999999998853 79999999999 699999999999876522 233334455555666
Q ss_pred HHHHHhHHHHHHhhcc
Q 040629 404 VIMTGGVAPIISTMYR 419 (786)
Q Consensus 404 vv~t~i~~plv~~l~~ 419 (786)
++.+...+|+.+++..
T Consensus 392 ~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 392 LVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHhhhHHHHHHHhcc
Confidence 6666666666666443
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-24 Score=226.92 Aligned_cols=348 Identities=16% Similarity=0.172 Sum_probs=296.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc-cccccccccCCchhHHHHHHHHHHHHHHHH
Q 040629 26 EPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSVTTLETVAYMALDLYIFL 104 (786)
Q Consensus 26 ~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~~~l~~l~~igl~~llF~ 104 (786)
++...+++.-.++++++.+...+..|+|.|..+-.+..|++.|--++|. + | ++...-..++++++++++|.
T Consensus 3 ~t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------f--dNy~~Ay~vg~lALaiILfd 74 (574)
T COG3263 3 HTINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------F--DNYPFAYMVGNLALAIILFD 74 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------c--CccHHHHHHHHHHHHHHhhc
Confidence 3444556656688888999999999999999999999999999999886 2 2 45778889999999999999
Q ss_pred HhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 040629 105 IGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTD 184 (786)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 184 (786)
.|+.+.++.+|...++++.++..|++++-.+....+.++. +.+|- .++++|+++.+|+.+.+..+|.+.++ |.+
T Consensus 75 gG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll----~l~wl-e~~LiGAiVgSTDAAAVF~lL~~~nl-~er 148 (574)
T COG3263 75 GGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL----NLDWL-EGLLIGAIVGSTDAAAVFSLLGGKNL-NER 148 (574)
T ss_pred CccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccHHH-HHHHHHHhhccccHHHHHHHHccCCh-hhh
Confidence 9999999999999999999999999999888777777766 33455 89999999999999999999999887 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHH
Q 040629 185 IGRLATSIAMISDVCSWILVAVVLPIRSSP-EN--A--PAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYL 259 (786)
Q Consensus 185 ~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~ 259 (786)
++.+..-++--||.+++++....+.+...+ ++ . +..++...++.++..+...++..|+++|+.- .+..|.
T Consensus 149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL-----d~GL~p 223 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL-----DSGLYP 223 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc-----ccchhH
Confidence 999999999999999998876655554444 22 1 2224456677778888889999999999832 367889
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCc--hhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HHHHH
Q 040629 260 CFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRD--LGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NWFLA 335 (786)
Q Consensus 260 ~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~--~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~~~~ 335 (786)
.++++..+..+.+++.+|.|++++.+++|+++.|.| .++.+.+..+.+. ++..-+.|...|+.++++.+. ....+
T Consensus 224 il~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~t-wlaQI~MFlvLGLLvtPsql~~iavPai 302 (574)
T COG3263 224 ILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLA-WLAQILMFLVLGLLVTPSQLLPIAIPAI 302 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHH-HHHHHHHHHHHHHhcCHhhhhHhhHHHH
Confidence 999999999999999999999999999999999954 4566777777777 899999999999999999887 66667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChh
Q 040629 336 GFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQ 394 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~ 394 (786)
++.+...+++|++++|+...-++.+++|.++++| -+-||.++++++...+-.|.-+.+
T Consensus 303 lL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~ 360 (574)
T COG3263 303 LLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENAR 360 (574)
T ss_pred HHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccce
Confidence 7788888999999999999999999999999999 699999999999987766665554
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.93 E-value=7e-23 Score=235.01 Aligned_cols=377 Identities=14% Similarity=0.152 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-ccc-CCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 040629 29 PLLIVQLAFIITITRSLYFIL-RPL-RQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIG 106 (786)
Q Consensus 29 ~~~l~~i~lil~~~~~~~~l~-~rl-~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~G 106 (786)
|..+.-..++..++.+...+. |+. ++|..+..++.|+++|+...+.+.. +. ..-.-+.+-.+.+..++|..|
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~-----~~-~~l~~~lf~~~~LPpIlFe~g 81 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI-----DP-PTLDSSYFFLYLLPPIVLDAG 81 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC-----cc-CCcCHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444 334 4999999999999999864332110 00 011125566678889999999
Q ss_pred hccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCCchHHHHHHHHHhhccHHHHHHHHHhcCccC
Q 040629 107 LEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLH----LPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQ 182 (786)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~----~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 182 (786)
+++|.+.++++.+.++.+|+.+++++.++.....+++..... +.+|. .++++|+++|+|++.++..++++.+. +
T Consensus 82 ~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~-~allfGAiiSaTDPVAVlai~~~~~v-~ 159 (559)
T TIGR00840 82 YFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLL-DNLLFGSLISAVDPVAVLAVFEEYHV-N 159 (559)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHH-HHHHHhHHhcCCchHHHHHHHHhcCC-C
Confidence 999999999999999999999999987776666554432110 11223 89999999999999999999999996 8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCch---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 040629 183 TDIGRLATSIAMISDVCSWILVAVVLPIRSS--PENA---P----AAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNA 253 (786)
Q Consensus 183 s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~--~~~~---~----~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~ 253 (786)
.++-.++.++|++||.++++++.++..+... +... + ..++...+..++++++.+.+..++.|+....
T Consensus 160 ~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---- 235 (559)
T TIGR00840 160 EKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---- 235 (559)
T ss_pred cchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 8999999999999999999999888776532 1111 1 1111111224444555666777777776432
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC------CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccc
Q 040629 254 YSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD------RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVH 327 (786)
Q Consensus 254 ~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~------~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~ 327 (786)
+.....+++++++++++++|.+|.|++++++++|+++.+ .+..+.-.+.+....+.++..+.|++.|+.+...
T Consensus 236 -~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~ 314 (559)
T TIGR00840 236 -RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTE 314 (559)
T ss_pred -chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677888899999999999999999999999999964 2222223334555556888999999999976322
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChh-----h
Q 040629 328 KVH-NWFLAGFVIILTCFCKILGTLLVSHS------YHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQ-----E 395 (786)
Q Consensus 328 ~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~-----~ 395 (786)
... .|..+++.+++.+++|+++++..++. .+.+++|.+.++| .+.||.++++++....+.+.-..+ +
T Consensus 315 ~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t 393 (559)
T TIGR00840 315 NHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTT 393 (559)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 222 55555555666778899998876653 3579999999999 699999999998766543333233 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcc
Q 040629 396 YAVMVIAIVIMTGGVAPIISTMYR 419 (786)
Q Consensus 396 ~~~lvl~~vv~t~i~~plv~~l~~ 419 (786)
+.++++++++....++|+++++.-
T Consensus 394 ~~VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 394 LVVVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HeeehHHHHHHHhhHHHHHHHhCC
Confidence 333334555555566788877643
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.79 E-value=1.7e-18 Score=187.17 Aligned_cols=282 Identities=10% Similarity=0.030 Sum_probs=175.5
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|+|.++....+++.+..++.. .+.+++++|+++......+....... .. .......++..+.++++.+
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQR--NGGKITAFLPIYDFSYEMTTLLSPDE--RE---AMRQGVISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHh--cCCCEEEEEeccCchhhhhcccchhH--HH---HHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999888854 55779999988543211110000000 00 0000001111222333322
Q ss_pred cC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 521 RS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 521 ~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
.. .+++++..+... ++.+++|++.|+++++||||||+|++. ...+..+|++.+++++++||||.++.++.
T Consensus 77 ~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~------~~~~~~~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 77 PYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHD------KLESVIFTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred HHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCc------HHHhhccChhHHHHHhcCCCCEEEecccc
Confidence 11 467777765533 588999999999999999999999542 23445688999999999999998765432
Q ss_pred CCCCCCCcceEEEEecccCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeccCCCCcccccccccc-ccCcchh--
Q 040629 599 QGKSDNGRMQHVVMVFIGGPDD-------REALALAWRMSANP-SVQLTVLRLHSRYNNNVKEEDIRYSK-CIDGRQS-- 667 (786)
Q Consensus 599 ~~~~~~~~~~~I~v~f~Gg~dd-------reAL~~A~rma~~~-~~~ltvv~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 667 (786)
. ...++|+++++|++++ +.|+++|.++|+.. +++++++++.+....+. .. .+.. ..++.++
T Consensus 149 ~-----~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~-~~--~~~~~~~~~~~~~~ 220 (305)
T PRK11175 149 W-----PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI-AI--ELPEFDPSVYNDAI 220 (305)
T ss_pred c-----CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc-cc--cccccchhhHHHHH
Confidence 1 1357999999998753 67999999999987 99999999972111000 00 0000 0001111
Q ss_pred -hhHHHHHHHHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhh
Q 040629 668 -QVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLL 746 (786)
Q Consensus 668 -~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~l 746 (786)
+..++.++++.++.... ........++..+.+ .+.+++.++||+++|.+++ .++.+| -+|...+-+
T Consensus 221 ~~~~~~~l~~~~~~~~~~--~~~~~v~~G~~~~~I--~~~a~~~~~DLIVmG~~~~-----~~~~~~----llGS~a~~v 287 (305)
T PRK11175 221 RGQHLLAMKALRQKFGID--EEQTHVEEGLPEEVI--PDLAEHLDAELVILGTVGR-----TGLSAA----FLGNTAEHV 287 (305)
T ss_pred HHHHHHHHHHHHHHhCCC--hhheeeccCCHHHHH--HHHHHHhCCCEEEECCCcc-----CCCcce----eecchHHHH
Confidence 11223455555443211 111122234455444 4555567899999999975 444444 579999999
Q ss_pred hcCCCCCccEEEEe
Q 040629 747 VYSDFIRASVLVVQ 760 (786)
Q Consensus 747 as~~~~~~svLvvq 760 (786)
+..- +++||||.
T Consensus 288 ~~~~--~~pVLvv~ 299 (305)
T PRK11175 288 IDHL--NCDLLAIK 299 (305)
T ss_pred HhcC--CCCEEEEc
Confidence 8887 99999995
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.7e-17 Score=164.69 Aligned_cols=338 Identities=15% Similarity=0.172 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc--cccccccccCCchhHHHHHHHHHHHHHHHHHhhccCh
Q 040629 34 QLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR--KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDV 111 (786)
Q Consensus 34 ~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~--~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~ 111 (786)
.-+.+.+++...-.+-+++-+...+--.+.|+++||.++++ |... .+.+.....++.+-+-.=.|.++.|+.-
T Consensus 18 ~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w-----gn~d~it~ei~RvvLcvqvfava~eLPr 92 (467)
T KOG4505|consen 18 SGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW-----GNKDYITYEISRVVLCVQVFAVAMELPR 92 (467)
T ss_pred HhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc-----cCcchhhhhhhhhhHhHHHHHHHHhccH
Confidence 33455556666666677788888888889999999999988 3211 1234566778888888999999999999
Q ss_pred hHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhc---CccCChhHHH
Q 040629 112 NSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGEL---KLLQTDIGRL 188 (786)
Q Consensus 112 ~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g~l 188 (786)
+.+.++++...++-+.-+++-+++.+...|.+.+.. .. ..++.++++++.|++.....+..+- |..+.++..+
T Consensus 93 ~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-nf---~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~l 168 (467)
T KOG4505|consen 93 AYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-NF---LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNL 168 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cH---HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHH
Confidence 999999999888777767777777777777776433 11 1889999999999976666666543 3356678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc------h-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCChh
Q 040629 189 ATSIAMISDVCSWILVAVVLPIRSSPEN------A-PAAIISTIA----FSLTCIYAVRPGLEWLIRRTSKGNNNAYSDS 257 (786)
Q Consensus 189 ~ls~a~i~D~~~~~ll~~~~~~~~~~~~------~-~~~~~~~~~----~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~ 257 (786)
..+++-.||..+++++.+.+.+...+.. . ...++.-+. +..++.++.|..+.+..++.- -..|+
T Consensus 169 L~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrl-----id~eS 243 (467)
T KOG4505|consen 169 LAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRL-----IDRES 243 (467)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHH
Confidence 9999999999999999888776543321 1 112232333 344444555555554444432 24788
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-CchhHHH-HHHHHHHHHHhhHHHHHHHhhhhcccchhh-----
Q 040629 258 YLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDLGALL-FERFADFVSGIMLPLFFAMCGIRTNVHKVH----- 330 (786)
Q Consensus 258 ~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~~~~l-~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----- 330 (786)
++.+-+++.+.|+.+.+.+|.+.++-.|.||.+++. ..+..+. ..++..+.+.++.-.||++.|..++++.++
T Consensus 244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g 323 (467)
T KOG4505|consen 244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence 999999999999999999999999999999999998 6665544 447888888889999999999999998886
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHhhhhhhHHHHHhhccc
Q 040629 331 --NWFLAGFVIILTCFCKILGTLLVSHSYH--MPLQDRLALGVLMNTKGILAVVVLNLGW 386 (786)
Q Consensus 331 --~~~~~~~ii~~~~~~K~i~~~l~~~~~~--~~~~~~~~lgl~l~~rG~v~l~~~~~~~ 386 (786)
.|..+.+-+.+.+.-|+-++++.-.+.. .+|||+++.|+ .+|.|.-++..+..+.
T Consensus 324 l~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 324 LPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred chHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 4666666666666667777666544432 47999999999 8999998888776653
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.72 E-value=1.2e-14 Score=158.56 Aligned_cols=269 Identities=17% Similarity=0.234 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++-..+ ... +.. ..--+ .
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~----n~~--~~~---~~~GW-~ 130 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV----NLA--GGG---ALRGW-A 130 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH----hCC--chh---hhhhh-h
Confidence 3456667777788999999999655442 222222 456777888887543322 111 000 11222 2
Q ss_pred HHhhccHHHHHHHHHhcCcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGELKLL-QTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el~ll-~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-+.|+.+....+|..++.. +++++..+++.|++||+.+++++++.. +++.+..+..... +.+++ .
T Consensus 131 Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~~L~~a~-~~~~~---------l 197 (423)
T PRK14853 131 IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLEALLLAL-VPLAL---------F 197 (423)
T ss_pred hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHHHHHHHH-HHHHH---------H
Confidence 55678889999999998754 889999999999999999999998876 1222222222221 11111 1
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C-----------chhHHHHHHHHHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R-----------DLGALLFERFADFV 308 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~-----------~~~~~l~~~l~~~~ 308 (786)
|+.++. +.++.+.++++. +++.+..+..|+|+.+|+|++|+++|. + +..+++++++++++
T Consensus 198 ~~l~~~------~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V 269 (423)
T PRK14853 198 WLLVQK------RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLS 269 (423)
T ss_pred HHHHHc------CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 333332 244555555553 355668889999999999999999995 2 23578999999999
Q ss_pred HHhhHHHH-HHHhhhhccc-chhh-HH--HHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhh
Q 040629 309 SGIMLPLF-FAMCGIRTNV-HKVH-NW--FLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNT 373 (786)
Q Consensus 309 ~~l~~Plf-F~~~G~~~d~-~~l~-~~--~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~ 373 (786)
+.+++|+| |+..|.++|. ..+. .+ ...+.+++..+++|.+|.+..++.. +++|++-..+|++-+.
T Consensus 270 ~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GI 349 (423)
T PRK14853 270 AGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGI 349 (423)
T ss_pred HHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999 9999999986 4452 22 2567888889999999988887763 5689999999986555
Q ss_pred hhhHHHHHhhcccc
Q 040629 374 KGILAVVVLNLGWD 387 (786)
Q Consensus 374 rG~v~l~~~~~~~~ 387 (786)
-=++++.+++.+.+
T Consensus 350 GFTmSlFI~~LAf~ 363 (423)
T PRK14853 350 GFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHhhcC
Confidence 45677888888883
No 19
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.7e-16 Score=170.69 Aligned_cols=379 Identities=17% Similarity=0.189 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHHHHHHHcccC---CChhHHHHHHHHhhCccCCCc-ccccc-----ccccCCchhHHHHHHHHHHHHHH
Q 040629 32 IVQLAFIITITRSLYFILRPLR---QPRLVTDILGGLLLGPSFFGR-KAYFS-----KLFPVRSVTTLETVAYMALDLYI 102 (786)
Q Consensus 32 l~~i~lil~~~~~~~~l~~rl~---~P~iv~~ilaGiilGP~~lg~-~~~~~-----~~fp~~~~~~l~~l~~igl~~ll 102 (786)
++-..++++++.+..+++++-| +|.-+.-++.|+++|-..... ....+ ..|.+ +.+-.+-+--++
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 4445666777888899999888 999999999999999543222 11111 11211 234444556688
Q ss_pred HHHhhccChhHHHhcchhhHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCCch-HHHHHHHHHhhccHHHHHHHHHhcCc
Q 040629 103 FLIGLEMDVNSIKSSSKRELNIAAAGALIPM-GVGAGLFFLTARLLHLPTDPS-GCLFWGLTLTVTGFPAVTWILGELKL 180 (786)
Q Consensus 103 F~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~-~~~~~~~~~l~~~~~~~~~~~-~~l~lg~~ls~Ts~~vv~~iL~el~l 180 (786)
|..|.+++-+.+.|+.......++.|..++. ++|.++.++.. .....++.+ .++++|+++|.|+|..+..++.|++-
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v 189 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV 189 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC
Confidence 9999999999999999999999999887764 45555444433 221334554 89999999999999999999999996
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 040629 181 LQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPEN--AP----AAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAY 254 (786)
Q Consensus 181 l~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~ 254 (786)
..++-.++-+++++||.++++++..+........+ +. ..++........++...+.+-..+.|++.-+ + .
T Consensus 190 -d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~--~-~ 265 (575)
T KOG1965|consen 190 -DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR--R-T 265 (575)
T ss_pred -CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-C
Confidence 78889999999999999999999988776544322 11 1111111111112222233333444444332 2 4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C-----chhHHHHHHHHHHHHHhhHHHHHHHhhh-hcccc
Q 040629 255 SDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R-----DLGALLFERFADFVSGIMLPLFFAMCGI-RTNVH 327 (786)
Q Consensus 255 ~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~-----~~~~~l~~~l~~~~~~l~~PlfF~~~G~-~~d~~ 327 (786)
...+..+.+++....+++||.+|+++++..+.+|+++++ . +..+.-.+.+-.+.+.+..-+-|.++|+ -++..
T Consensus 266 ~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~ 345 (575)
T KOG1965|consen 266 PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQ 345 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 556788899999999999999999999999999999988 2 2334444455555568888889999996 23333
Q ss_pred hhh-H-HHHHHHHHHHHHHHHHHHHHHHHHhc------C----CChHHHHHHHHHhhhhhhHHHHHhhccc-c-----CC
Q 040629 328 KVH-N-WFLAGFVIILTCFCKILGTLLVSHSY------H----MPLQDRLALGVLMNTKGILAVVVLNLGW-D-----KK 389 (786)
Q Consensus 328 ~l~-~-~~~~~~ii~~~~~~K~i~~~l~~~~~------~----~~~~~~~~lgl~l~~rG~v~l~~~~~~~-~-----~~ 389 (786)
... . ...+....++.+++|..-.+-.+.+. + .|.++-..++|.-..||.++++++.--. + ..
T Consensus 346 k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q 425 (575)
T KOG1965|consen 346 KHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQ 425 (575)
T ss_pred ceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccccccc
Confidence 332 2 23455666677778877766555553 2 4566678888876699999999986421 1 13
Q ss_pred CCChhhHHHHHHHHHHHHHhHHHHHHhhccch
Q 040629 390 VLHDQEYAVMVIAIVIMTGGVAPIISTMYRSS 421 (786)
Q Consensus 390 ~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~ 421 (786)
.+-..+..++++.+++....+.|+++++-...
T Consensus 426 ~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~ 457 (575)
T KOG1965|consen 426 TIFTTTLVVVLFTVLVFGGSTKPMLSYLMISV 457 (575)
T ss_pred EEEEeeeeeeeeeeeeeCCccHHHHHHhcccc
Confidence 34344455555777777788899999876443
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.43 E-value=8.9e-13 Score=123.58 Aligned_cols=131 Identities=18% Similarity=0.322 Sum_probs=99.6
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
|||+|++++++.+.+++.+..+++. .+.+++++|+++.+..... +... ...+..++..+.+.+..+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~ 67 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLE-------VNVQRARKLLRQAERIAAS 67 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhH-------HHHHHHHHHHHHHHHHhhh
Confidence 6999999999999999999999965 6789999999987654322 1000 0112244555555555544
Q ss_pred CCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 522 STGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 522 ~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.++.++..+..+ .++.++||+.|+++++|+||||+|+++.. .+..+|+++++|++++||||+|+
T Consensus 68 -~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~------~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 68 -LGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL------RDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred -cCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc------cceecCchHHHHHhcCCCCEEEe
Confidence 567788888765 57999999999999999999999965432 34568999999999999999875
No 21
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.43 E-value=4e-11 Score=128.65 Aligned_cols=269 Identities=17% Similarity=0.230 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++=..+.. ........|.
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW~-------- 120 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGWA-------- 120 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCccc--------
Confidence 4456667777788999999999887775 344443 45566777777654332211 1000011232
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGEL-KLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=+ +..+..+....++-+++||+.+++++++... ++-+..|.......+ ++ .
T Consensus 121 IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~~~L~~a~~~~-~~---------l 187 (373)
T TIGR00773 121 IPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSMAALLVAAVAI-AV---------L 187 (373)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCHHHHHHHHHHH-HH---------H
Confidence 11223333233333222 2246777888999999999999988877642 222233332222111 11 1
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cch----hHHHHHHHHHHHHHhhHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDL----GALLFERFADFVSGIMLPL 315 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~----~~~l~~~l~~~~~~l~~Pl 315 (786)
++.+|.. .++...+.++. ++..+++ ...|+|+.+|+|++|+++|. .+. .+++++.+++.+..+++|+
T Consensus 188 ~~~~~~~------v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPl 259 (373)
T TIGR00773 188 AVLNRCG------VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPL 259 (373)
T ss_pred HHHHHcC------CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334431 33444444433 3333333 79999999999999999998 333 3566677777798999999
Q ss_pred H-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629 316 F-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVL 382 (786)
Q Consensus 316 f-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~ 382 (786)
| |+..|.++|...+. .......+++..+++|.+|++..++.. +++|++-..+|++-+.-=++++.++
T Consensus 260 FAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~ 339 (373)
T TIGR00773 260 FAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIA 339 (373)
T ss_pred HHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999865544 234577888899999999999988763 5689999999886444446777777
Q ss_pred hcccc
Q 040629 383 NLGWD 387 (786)
Q Consensus 383 ~~~~~ 387 (786)
+.+.+
T Consensus 340 ~LAf~ 344 (373)
T TIGR00773 340 SLAFG 344 (373)
T ss_pred HHhcC
Confidence 77774
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.18 E-value=9e-11 Score=111.91 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=89.9
Q ss_pred ceEEEEEcCCC--chhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 441 LRILACVHGVG--NVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 441 ~riLv~v~~~~--~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
.|||+|+|+++ +...+++.+..++.. . ..++++|+++...... . .......... .....++..+.++++
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~--~~~~~~~~~~~l~~~ 73 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLS-L---HRFAADVRRF--EEHLQHEAEERLQTM 73 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccccc-c---cccccchhhH--HHHHHHHHHHHHHHH
Confidence 47999999984 789999999888753 3 4799999997542111 0 0000000000 001112233334444
Q ss_pred HhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 ENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 ~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+.. .+..++..+..+ +..++|++.|+++++||||||.|++ . ..+..+||+.++|++++||||.|.
T Consensus 74 ~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~------~-~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 74 VSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNP------S-ISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCC------C-ccceecCccHHHHHHcCCCCEEEe
Confidence 3321 456778777665 8999999999999999999999943 2 234568999999999999998764
No 23
>PRK15005 universal stress protein F; Provisional
Probab=99.16 E-value=1.7e-10 Score=110.17 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCc--hhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 441 LRILACVHGVGN--VLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 441 ~riLv~v~~~~~--~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
.|||+|+|++++ ...+++.+..++.. .+..++++|+++.............. . . .......++..+.++++
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~~l~~~ 75 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSA--E-L--PAMDDLKAEAKSQLEEI 75 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccc--c-c--hHHHHHHHHHHHHHHHH
Confidence 379999999997 46888888888754 56789999999753221110000000 0 0 00001122233344444
Q ss_pred HhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 ENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 ~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+.. .++.++..+..+ +..+.|++.|++.++||||||.|+. | ..+..+|++.++|++++||||.|.
T Consensus 76 ~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~----~---~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 76 IKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHRP----D---ITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCCC----C---chheeecchHHHHHHhCCCCEEEe
Confidence 3321 455667666554 7899999999999999999999831 1 234568999999999999998764
No 24
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.14 E-value=2.4e-10 Score=109.37 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=90.5
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
+||+|+|++++...+++.+..++.. ....++++|+++.+...... .. ...... .......++..+.++++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSIPSS---SG-KLEVAS-AYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccCCCC---cc-chHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998865 56789999999754221100 00 000000 00000112222333333221
Q ss_pred C--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchH-HHHHHHhccCC--CceEEE
Q 040629 522 S--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFR-EVNKNILANAP--CSVGIF 594 (786)
Q Consensus 522 ~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~-~vn~~Vl~~Ap--CsVgIl 594 (786)
. .++.++..+..+ .++.+.|+++|++.++|+||||.|++ ....+..++ ++.++|++++| |||.|.
T Consensus 74 ~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~------~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 74 CSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSD------NHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCC------CceeecccCCchhHHHHhcCCCCceEEEE
Confidence 1 466777666654 47899999999999999999999954 333344566 69999999999 999764
No 25
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.13 E-value=4.3e-11 Score=132.04 Aligned_cols=373 Identities=13% Similarity=0.150 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcccC--CChhHHHHHHHHhhCccCCCc-cccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 040629 31 LIVQLAFIITITRSLYFILRPLR--QPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGL 107 (786)
Q Consensus 31 ~l~~i~lil~~~~~~~~l~~rl~--~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gl 107 (786)
.+.-..++..++.+...+..+++ .|.-...|+.|+++|-...+. ..-...+ + -+.+--.-+--++|-+|.
T Consensus 43 vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L---~----s~vFFlyLLPPIvlDAGY 115 (670)
T KOG1966|consen 43 VITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFL---E----SDVFFLYLLPPIVLDAGY 115 (670)
T ss_pred hhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccc---c----ccchhhhhcCHHHhcccc
Confidence 33333444445555555555554 798888899999988655433 1000000 1 111111223337799999
Q ss_pred ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHh--hhcCCCCch-HHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 040629 108 EMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTAR--LLHLPTDPS-GCLFWGLTLTVTGFPAVTWILGELKLLQTD 184 (786)
Q Consensus 108 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~--~~~~~~~~~-~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 184 (786)
-|.-+.+..+...++..|+.|.+.-.....+.-|.+.. .+ +...+. ..++.|...|..+|..+..+..|.+- |.-
T Consensus 116 fMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf-~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~ 193 (670)
T KOG1966|consen 116 FMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLF-GMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEV 193 (670)
T ss_pred cCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccE
Confidence 99999999999999999999988754332222222222 12 222222 78889999999999999999999996 666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 040629 185 IGRLATSIAMISDVCSWILVAVVLPIRSSPEN---------APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYS 255 (786)
Q Consensus 185 ~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~ 255 (786)
+=-++-+++++||.+.+++.-+......-++. ....++.+.+.++.++.+...+.....|.+. + ++
T Consensus 194 LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~-~----vr 268 (670)
T KOG1966|consen 194 LFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTK-H----VR 268 (670)
T ss_pred EEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhc-c----ee
Confidence 66788899999999999998777665543321 1111111111222222233333343444442 2 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC---Cch---hHHHHHHHHHHHHHhhHHHHHHHhhhhcccchh
Q 040629 256 DSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD---RDL---GALLFERFADFVSGIMLPLFFAMCGIRTNVHKV 329 (786)
Q Consensus 256 ~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~---~~~---~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l 329 (786)
=..-++++.+.+.+|..+|.+++|++++-.++|+.+.. ... ...-.+.+-...+..--++.|++.|..+-=..=
T Consensus 269 viePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h 348 (670)
T KOG1966|consen 269 VLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNH 348 (670)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcc
Confidence 45567889999999999999999999999999999976 222 233334444445677778889999987643211
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCC-----hhhHH
Q 040629 330 H-NWFLAGFVIILTCFCKILGTLLVSHSY------HMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLH-----DQEYA 397 (786)
Q Consensus 330 ~-~~~~~~~ii~~~~~~K~i~~~l~~~~~------~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~-----~~~~~ 397 (786)
. +|..+.+-++..++.|.+++..-+++. +++..|.+.++.. +-||.+...+....-...+-. ..++.
T Consensus 349 ~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~ 427 (670)
T KOG1966|consen 349 HWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIA 427 (670)
T ss_pred eeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeE
Confidence 1 566666666677778999888777765 4678899999884 889998887776554333333 33444
Q ss_pred HHHHHHHHHHHhHHHHHHhhc
Q 040629 398 VMVIAIVIMTGGVAPIISTMY 418 (786)
Q Consensus 398 ~lvl~~vv~t~i~~plv~~l~ 418 (786)
++.+++.+..+..-|+++|+-
T Consensus 428 VIfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 428 VIFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred EEeeeeeecccchHHHHHHHc
Confidence 444555566666779999864
No 26
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.09 E-value=3.1e-10 Score=108.37 Aligned_cols=133 Identities=8% Similarity=0.017 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|+|++++...+++.+..++.. .+..++++|+.+....... ..... . .. +......++..+.++++.+
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~---~~~~~-~-~~-~~~~~~~~~~~~~l~~~~~ 75 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYT---GLIDV-N-LG-DMQKRISEETHHALTELST 75 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhh---hhhhc-c-hH-HHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998888854 5678999999432111000 00000 0 00 0000112233344555544
Q ss_pred cCCceEEE-EeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 521 RSTGISVH-PLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 521 ~~~~v~v~-~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
. .++.+. ..... .+.++.|++.|++.++||||||.|+ +. .. .++|+.++|+++|||||.|.
T Consensus 76 ~-~~~~~~~~~~~~---G~p~~~I~~~a~~~~~DLIV~Gs~~------~~-~~--~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 76 N-AGYPITETLSGS---GDLGQVLVDAIKKYDMDLVVCGHHQ------DF-WS--KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred h-CCCCceEEEEEe---cCHHHHHHHHHHHhCCCEEEEeCcc------cH-HH--HHHHHHHHHHhhCCCCEEEe
Confidence 3 344443 33333 4899999999999999999999994 21 11 26799999999999998775
No 27
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=4e-08 Score=107.35 Aligned_cols=268 Identities=16% Similarity=0.143 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=..+.. .... ...|.
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~~-~~GWg-------- 135 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTPS-QHGFG-------- 135 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCCc-cCccc--------
Confidence 4556677777888999999999877774 333443 45566777777654322211 1000 11232
Q ss_pred HHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGELK-LLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=+| -.+..+....++-|++||+.+++++++... ++-+..|..+...++. +.
T Consensus 136 IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~~L~~a~~~~~-~l--------- 202 (438)
T PRK14856 136 IPMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKFAWLLGALGVVL-VL--------- 202 (438)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcHHHHHHHHHHHH-HH---------
Confidence 112333333333333232 246678888999999999999988887642 2222333333322221 11
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cch-----------------------
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDL----------------------- 296 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~----------------------- 296 (786)
++.+|.. .+....++++.+++-.+. ..-|+|+.++..++|+++|. ++.
T Consensus 203 ~~ln~~~------v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK14856 203 AVLNRLN------VRSLIPYLLLGVLLWFCV--HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALL 274 (438)
T ss_pred HHHHHcC------CccccHHHHHHHHHHHHH--HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccc
Confidence 2333321 333444454444333333 36799999999999999997 322
Q ss_pred ---------------------hHHHHHHHHHHHHHhhHHHH-HHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 040629 297 ---------------------GALLFERFADFVSGIMLPLF-FAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLV 353 (786)
Q Consensus 297 ---------------------~~~l~~~l~~~~~~l~~Plf-F~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~ 353 (786)
.+++++.+.+.+..+.+|+| |+-.|..++..... .-...+.+++..+++|.+|.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~ 354 (438)
T PRK14856 275 TKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGIFLI 354 (438)
T ss_pred ccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHHHHH
Confidence 13466677788888999999 88899988754332 22345677778889999999888
Q ss_pred HHhc----------CCChHHHHHHHHHhhhhhhHHHHHhhcccc
Q 040629 354 SHSY----------HMPLQDRLALGVLMNTKGILAVVVLNLGWD 387 (786)
Q Consensus 354 ~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~ 387 (786)
++.. +++|++-...|++-+.-=++++.+++.+.+
T Consensus 355 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 355 TFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7763 568999999888644444677777887774
No 28
>PRK09982 universal stress protein UspD; Provisional
Probab=99.05 E-value=5.2e-10 Score=106.73 Aligned_cols=134 Identities=7% Similarity=0.013 Sum_probs=86.3
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|+|++++...+++.+..++.. .+..++++|+++......+.. .....+. ......++..+.+++..+
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~l~~~~~ 75 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGI--YFPATED----ILQLLKNKSDNKLYKLTK 75 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhh--hccchHH----HHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988854 678899999987532111100 0000000 000011222223444433
Q ss_pred cCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 521 RSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 521 ~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
......++..+..+ ++.+.|++.|++.++||||||.| +. | .+ ..+ ++.++|+++|+|||.|.
T Consensus 76 ~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~---~---~~-~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 76 NIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HS---F---IN-RLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred hcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hh---H---HH-HHH-HHHHHHHhcCCCCEEEe
Confidence 22233456666655 89999999999999999999976 32 1 11 224 49999999999998775
No 29
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.02 E-value=1.4e-09 Score=100.95 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=88.3
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
|||+|+++++..+.+++.+..++.. .+..++++|+++.... . ..+..++..+.+++..+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----------------~~~~~~~~l~~~~~~~~~ 60 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----------------LSEAERRRLAEALRLAEE 60 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----------------CCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999865 5678999999863211 0 001123344444444433
Q ss_pred CCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccC-CCceEEE
Q 040629 522 STGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANA-PCSVGIF 594 (786)
Q Consensus 522 ~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~A-pCsVgIl 594 (786)
.++. ..+..+ .+..+.|++.|++.++|+|+||+|++. ..++..+|++.++|+++| ||||.|.
T Consensus 61 -~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~------~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 61 -LGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRS------RWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred -cCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCc------hHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 3343 334444 578999999999999999999999553 234456899999999999 9998764
No 30
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.00 E-value=1.3e-07 Score=102.00 Aligned_cols=269 Identities=17% Similarity=0.207 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=..+.. ........|.
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GWg-------- 127 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGWA-------- 127 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCccc--------
Confidence 3456667777788999999999887774 333443 45567777888654332211 1000011232
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGEL-KLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=+ +..+..+....++-+++||+.+++++++... ++-+..|......++.+ .
T Consensus 128 IPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~~~L~~a~~~~~~-l--------- 194 (389)
T PRK09560 128 IPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSLPALALAAIAIAV-L--------- 194 (389)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCHHHHHHHHHHHHH-H---------
Confidence 11233333333333322 2246677888899999999999988877642 22223333332221111 1
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cch------hHHHHHHHHHHHHHhhH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDL------GALLFERFADFVSGIML 313 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~------~~~l~~~l~~~~~~l~~ 313 (786)
++.+|.. .+....+.++..++-.+. ..-|+|+.++..++|+.+|. ++. .+++++++++.++.+.+
T Consensus 195 ~~ln~~~------v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~Il 266 (389)
T PRK09560 195 FLLNRLG------VTKLTPYLIVGAILWFAV--LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAIL 266 (389)
T ss_pred HHHHHcC------CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhH
Confidence 2233321 334445555444433333 36799999999999999997 221 36788999999988889
Q ss_pred HHH-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHH
Q 040629 314 PLF-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVV 380 (786)
Q Consensus 314 Plf-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~ 380 (786)
|+| |+-.|..++-..+. .-.....+++..+++|.+|.++.++.. +++|++-...|++-+.-=++++.
T Consensus 267 PlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 346 (389)
T PRK09560 267 PLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLF 346 (389)
T ss_pred HHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 77888888422232 223456777888899999998887762 56899999998865544467777
Q ss_pred Hhhcccc
Q 040629 381 VLNLGWD 387 (786)
Q Consensus 381 ~~~~~~~ 387 (786)
+++.+..
T Consensus 347 Ia~LAF~ 353 (389)
T PRK09560 347 IGSLAFG 353 (389)
T ss_pred HHHhhcC
Confidence 7787773
No 31
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.93 E-value=2.5e-07 Score=99.61 Aligned_cols=269 Identities=17% Similarity=0.212 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++=..+.. ........|.
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GWa-------- 127 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGWA-------- 127 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCccc--------
Confidence 3456666777788999999999987774 333443 45566777777654332211 1000001232
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGEL-KLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=+ +..+..+....++-+++||+.+++++++... ++-+..+..+....+. + .
T Consensus 128 IP~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~~L~~a~~~~~-~---------l 194 (388)
T PRK09561 128 IPAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSMVSLGVAAVAIA-V---------L 194 (388)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccHHHHHHHHHHHH-H---------H
Confidence 11223333333333222 2246677888899999999999988877642 2212222222221111 1 1
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cc----hhHHHHHHHHHHHHHhhHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RD----LGALLFERFADFVSGIMLPL 315 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~----~~~~l~~~l~~~~~~l~~Pl 315 (786)
++.+|.. .+....+.++..++-.+. ..-|+|+.++..+.|+.+|. .+ ..+++++++++.++.+.+|+
T Consensus 195 ~~ln~~~------v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPl 266 (388)
T PRK09561 195 AVLNLCG------VRRTSVYILVGVVLWVAV--LKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPL 266 (388)
T ss_pred HHHHHcC------CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHH
Confidence 2333321 334445555444433333 46799999999999999997 22 14678899999998889999
Q ss_pred H-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629 316 F-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVL 382 (786)
Q Consensus 316 f-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~ 382 (786)
| |+-.|..++-..+. .-.....+++..+++|.+|.+..++.. +++|++-...|++-+.-=++++.++
T Consensus 267 FAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa 346 (388)
T PRK09561 267 FAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIA 346 (388)
T ss_pred HHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 77888887321222 223456777788899999998887762 5689999998885444446677777
Q ss_pred hcccc
Q 040629 383 NLGWD 387 (786)
Q Consensus 383 ~~~~~ 387 (786)
+.+.+
T Consensus 347 ~LAF~ 351 (388)
T PRK09561 347 SLAFG 351 (388)
T ss_pred HHhcC
Confidence 77774
No 32
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.93 E-value=5e-07 Score=96.93 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=..+.. .... ...|.
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~-~~GW~-------- 123 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKV-INGWA-------- 123 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcc-cCccc--------
Confidence 3456666777788999999999877764 344443 45677788888765433321 1110 11232
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGEL-KLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=+ +..+..+.-..++-+++||+.+++++++... ++-+..+..... +...+.
T Consensus 124 IP~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~~L~~A~-~~~~~l--------- 190 (383)
T PRK14854 124 IPSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KSLSLLSLSLGT-LFILAM--------- 190 (383)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCccHHHHHHHH-HHHHHH---------
Confidence 11223333233333222 2246677778888899999999988877642 221222222211 111111
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C-ch---hHHHHHHHHHHHHHhhHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R-DL---GALLFERFADFVSGIMLPL 315 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~-~~---~~~l~~~l~~~~~~l~~Pl 315 (786)
+..+|.. + .+....+.++..++-.+ ...-|+|+.++..+.|+.+|. . +. .+++++++++.++.+.+|+
T Consensus 191 ~~~nr~~-~----v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPl 263 (383)
T PRK14854 191 IICNRIF-K----INRSSVYVVLGFFAWFC--TIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPV 263 (383)
T ss_pred HHHHHhc-C----CceehHHHHHHHHHHHH--HHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHH
Confidence 1122210 1 23344444444333322 346799999999999999997 2 21 3678889999999999999
Q ss_pred H-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629 316 F-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVL 382 (786)
Q Consensus 316 f-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~ 382 (786)
| |+-.|..++-..+. .......+++..+++|.+|.+..++.. +++|++-...|++-+.-=++++.++
T Consensus 264 FA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa 343 (383)
T PRK14854 264 FAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIG 343 (383)
T ss_pred HHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 78888888422233 223456777888899999988887762 4689999999986554446777888
Q ss_pred hccccC
Q 040629 383 NLGWDK 388 (786)
Q Consensus 383 ~~~~~~ 388 (786)
+.+.+.
T Consensus 344 ~LAF~~ 349 (383)
T PRK14854 344 VLAFND 349 (383)
T ss_pred HhhCCC
Confidence 888753
No 33
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.93 E-value=6.7e-09 Score=97.17 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHH----H
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIF----E 516 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af----~ 516 (786)
.|||+|++++++...+++.+..++.. ....++++|+++................ ...+...... +
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 71 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESE---------EEAEEEEQARQAEAE 71 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccccc---------cccchhhhhhhHHHH
Confidence 48999999999999999998888855 6788999999987654332110000000 0000000000 1
Q ss_pred HhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 517 AFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 517 ~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
..... ........+.. .+..++|++.|++.++|+||||.|++. ...+..++++.+++++++||||.|+
T Consensus 72 ~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~------~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 72 EAEAE-GGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRS------GLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHH-TTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTT------STTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred HHhhh-ccceeEEEEEe---eccchhhhhccccccceeEEEeccCCC------CccCCCcCCHHHHHHHcCCCCEEEe
Confidence 11111 34444444444 489999999999999999999999643 2333569999999999999999775
No 34
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.89 E-value=4.8e-07 Score=98.65 Aligned_cols=284 Identities=17% Similarity=0.176 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+.-+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++=..+.. .... ...|.
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~-~~GWg-------- 130 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPG-ASGWG-------- 130 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-cCccc--------
Confidence 3456666777788999999999987774 344443 44566677777654322111 1000 01222
Q ss_pred HHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGELK-LLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+-..|+.+-...++.=++ -.+..+....++-|++||+.+++++++... ++-+..|..+...++ ++ .
T Consensus 131 IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~~L~~a~~~~-~~---------l 197 (423)
T PRK14855 131 VPMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNLLALLLAALTW-AL---------A 197 (423)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCHHHHHHHHHHH-HH---------H
Confidence 122344333333333333 235677788899999999999988877642 222233332222111 11 1
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCC-c-h----------------------
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDR-D-L---------------------- 296 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~-~-~---------------------- 296 (786)
++.+|. + ++....++++.+++-.+. ..-|+|+.++..+.|+.+|.. + .
T Consensus 198 ~~ln~~--~----v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 198 LLAGRL--G----VTSLKIYAVLGALLWFFV--LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred HHHHHc--C----CccccHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 233332 1 334444555444333332 367999999999999999862 1 1
Q ss_pred --------------hHHHHHHHHHHHHHhhHHHH-HHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 040629 297 --------------GALLFERFADFVSGIMLPLF-FAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSY---- 357 (786)
Q Consensus 297 --------------~~~l~~~l~~~~~~l~~Plf-F~~~G~~~d~~~l~~~~~~~~ii~~~~~~K~i~~~l~~~~~---- 357 (786)
.+++++++++.+..+.+|+| |+-.|..++-..+. ...+.+++..+++|.+|.++.++..
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~--pv~lGI~~GLvvGK~lGI~~~s~lavkl~ 347 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG--TVSLGVFLGLLLGKPLGVVGGAWLAVRLG 347 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC--cHHHHHHHHHHhcchHHHHHHHHHHHHhC
Confidence 24577788888988899999 77888888433222 2345667777889999988887762
Q ss_pred ------CCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHH
Q 040629 358 ------HMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVI 405 (786)
Q Consensus 358 ------~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv 405 (786)
+++|++-...|++-+.-=++++.+++.+.+.....++.-..+.++.++
T Consensus 348 ~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~ 401 (423)
T PRK14855 348 LASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVL 401 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH
Confidence 568999999998644444677778888875332333333333344433
No 35
>PRK10116 universal stress protein UspC; Provisional
Probab=98.87 E-value=9.2e-09 Score=97.86 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||++++.+++...+++.+..++.. .+..++++|+++........ .... .+. ......++..+.++++.+
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~--~~~~-~~~----~~~~~~~~~~~~l~~~~~ 74 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP--VNGKISLITLASDPEMYNQF--AAPM-LED----LRSVMQEETQSFLDKLIQ 74 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH--hCCEEEEEEEccCcccchhh--hHHH-HHH----HHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988854 46789999998653211110 0000 000 000112233344555444
Q ss_pred cCCceEEE-EeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEec
Q 040629 521 RSTGISVH-PLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVD 596 (786)
Q Consensus 521 ~~~~v~v~-~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvd 596 (786)
. .++... ... ...+..+.|++.|++.++||||||.|++.. .++ +.++.++|++++||||.|+-.
T Consensus 75 ~-~~~~~~~~~~---~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~------~~~--~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 75 D-ADYPIEKTFI---AYGELSEHILEVCRKHHFDLVICGNHNHSF------FSR--ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred h-cCCCeEEEEE---ecCCHHHHHHHHHHHhCCCEEEEcCCcchH------HHH--HHHHHHHHHhcCCCCEEEEeC
Confidence 4 344332 333 336899999999999999999999995432 122 237889999999999987643
No 36
>PRK11175 universal stress protein UspE; Provisional
Probab=98.80 E-value=1.4e-08 Score=109.72 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=91.3
Q ss_pred cceEEEEEcCCCch-------hhHHHHHhhhcCCCCC-CcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchH
Q 040629 440 ELRILACVHGVGNV-------LGTINLLELSNATKES-PLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRI 511 (786)
Q Consensus 440 e~riLv~v~~~~~~-------~~li~L~~~~~~~~~~-~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 511 (786)
.-+||+|++.++.. ..+++.+..++.. . ...++++|+.+........-..... .. +......++.
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~ 224 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNAYPVTPINIAIELPEFD-PS----VYNDAIRGQH 224 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEEecCcchhccccccccc-hh----hHHHHHHHHH
Confidence 35899999987653 4678888887744 3 5679999998754321100000000 00 0000111223
Q ss_pred HHHHHHhHhcCCceEE-EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCc
Q 040629 512 VNIFEAFENRSTGISV-HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCS 590 (786)
Q Consensus 512 ~~af~~~~~~~~~v~v-~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCs 590 (786)
.+.++++.+. .++.. +..+.. .+..+.|++.|+++++||||||.|++ ....+..+|++.++|++++|||
T Consensus 225 ~~~l~~~~~~-~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~------~~~~~~llGS~a~~v~~~~~~p 294 (305)
T PRK11175 225 LLAMKALRQK-FGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGR------TGLSAAFLGNTAEHVIDHLNCD 294 (305)
T ss_pred HHHHHHHHHH-hCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCcc------CCCcceeecchHHHHHhcCCCC
Confidence 3445555444 33433 233333 47889999999999999999999954 3344567999999999999999
Q ss_pred eEEEecCCCC
Q 040629 591 VGIFVDKGQG 600 (786)
Q Consensus 591 VgIlvdrg~~ 600 (786)
|.++..+|+.
T Consensus 295 VLvv~~~~~~ 304 (305)
T PRK11175 295 LLAIKPDGYV 304 (305)
T ss_pred EEEEcCCCCC
Confidence 9888776654
No 37
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.78 E-value=7.9e-08 Score=91.87 Aligned_cols=137 Identities=10% Similarity=0.096 Sum_probs=88.6
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCccccccccccccC--cchhhhHHHHHHHHHhhcCCCC
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQTAGEH 685 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~~ 685 (786)
+|+++++|++.++.|+.+|.++|+..+.++++++++ +..... ..........+ ++.++..++.++++++.... .
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 77 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIP--SSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-K 77 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence 489999999999999999999999999999999998 221110 00000000000 12233445666666554322 2
Q ss_pred ceEEEEEEe--CChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccc-cchhhhhcCCCCC--ccEEEEe
Q 040629 686 NVNYYEKVV--NNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIG-AIGDLLVYSDFIR--ASVLVVQ 760 (786)
Q Consensus 686 ~v~~~e~~v--~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG-~igd~las~~~~~--~svLvvq 760 (786)
.+.+...++ +++.+++ ++.+++.+.||+++|++|+ .++..+ -+| .+.+.+...- + |+|||||
T Consensus 78 ~~~~~~~~~~g~~~~~~I--~~~a~~~~~dlIV~Gs~g~-----~~l~~~----~~gssva~~Vi~~a--~~~c~Vlvv~ 144 (146)
T cd01989 78 GVQCEDVVLEDDDVAKAI--VEYVADHGITKLVMGASSD-----NHFSMK----FKKSDVASSVLKEA--PDFCTVYVVS 144 (146)
T ss_pred CCeEEEEEEeCCcHHHHH--HHHHHHcCCCEEEEeccCC-----Cceeec----ccCCchhHHHHhcC--CCCceEEEEe
Confidence 234443343 2556655 6666567899999999976 344333 366 6899998887 6 9999998
Q ss_pred e
Q 040629 761 H 761 (786)
Q Consensus 761 q 761 (786)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 4
No 38
>PRK15005 universal stress protein F; Provisional
Probab=98.67 E-value=3.3e-07 Score=87.31 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=85.9
Q ss_pred ceEEEEecccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeccCCCCcccccccccccc---C-cchhhhHHHHHHHHHhh
Q 040629 607 MQHVVMVFIGGPD--DREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCI---D-GRQSQVDAEFVNEFRLQ 680 (786)
Q Consensus 607 ~~~I~v~f~Gg~d--dreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~d~~~l~~~~~~ 680 (786)
.++|++|++|+++ .+.|+++|.++|+..+++++++++++.... ....+..... + +..++..++.++++.++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPY---YASLGLAYSAELPAMDDLKAEAKSQLEEIIKK 78 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcc---cccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4689999999998 479999999999999999999999932110 0000000000 0 12223334555666555
Q ss_pred cCCCCceEEE-EEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 681 TAGEHNVNYY-EKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 681 ~~~~~~v~~~-e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
.... .+.++ ....+++.+.+ ++.+++.++||+|+|+++ .|+.+| -+|...+-+...- +++||||
T Consensus 79 ~~~~-~~~~~~~v~~G~p~~~I--~~~a~~~~~DLIV~Gs~~------~~~~~~----llGS~a~~vl~~a--~cpVlvV 143 (144)
T PRK15005 79 FKLP-TDRVHVHVEEGSPKDRI--LELAKKIPADMIIIASHR------PDITTY----LLGSNAAAVVRHA--ECSVLVV 143 (144)
T ss_pred hCCC-CCceEEEEeCCCHHHHH--HHHHHHcCCCEEEEeCCC------CCchhe----eecchHHHHHHhC--CCCEEEe
Confidence 4322 22222 22335555554 555556789999999873 233343 4799888888887 8999998
Q ss_pred e
Q 040629 760 Q 760 (786)
Q Consensus 760 q 760 (786)
.
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 4
No 39
>PRK09982 universal stress protein UspD; Provisional
Probab=98.66 E-value=1.5e-07 Score=89.77 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=80.2
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC--cchhhhHHHHHHHHHhhcCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~ 684 (786)
.++|+++.+|+++++.|++.|.++|+.++++++++++++...... .+. ......+ +..++..++.+++.++....
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELY-PGI-YFPATEDILQLLKNKSDNKLYKLTKNIQW- 79 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhc-hhh-hccchHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 579999999999999999999999999999999999983211000 000 0000000 12223334556666654322
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
..+. .....+++.+++ ++.+++.++||+|+|+| + .|+..| +| +.+-..... +++||||.
T Consensus 80 ~~~~-~~v~~G~p~~~I--~~~A~~~~aDLIVmG~~-~-----~~~~~~-----~~-va~~V~~~s--~~pVLvv~ 138 (142)
T PRK09982 80 PKTK-LRIERGEMPETL--LEIMQKEQCDLLVCGHH-H-----SFINRL-----MP-AYRGMINKM--SADLLIVP 138 (142)
T ss_pred Ccce-EEEEecCHHHHH--HHHHHHcCCCEEEEeCC-h-----hHHHHH-----HH-HHHHHHhcC--CCCEEEec
Confidence 1222 233346777766 56666788999999986 3 233333 23 333333333 67777763
No 40
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.66 E-value=1.6e-07 Score=86.70 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=89.1
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
|||+|+++++....+++.+..++.. .+..++++|+.+..+.... .... ......++.++.+......
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~---~~~~--------~~~~~~~~~l~~~~~~~~~ 67 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA---ELAE--------LLEEEARALLEALREALAE 67 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch---hHHH--------HHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999966 5688999999875443221 0000 0001122333333322222
Q ss_pred CCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEE
Q 040629 522 STGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGI 593 (786)
Q Consensus 522 ~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgI 593 (786)
.++.++.....+ +..++|++.+++.++|++|+|++++... .+..+++..+++++++||||.+
T Consensus 68 -~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~------~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 68 -AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGL------RRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred -CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcc------ceeeeccHHHHHHhCCCCCEEe
Confidence 567777666555 4489999999999999999999965322 2345788889999999999865
No 41
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.64 E-value=2e-07 Score=100.40 Aligned_cols=279 Identities=15% Similarity=0.229 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH
Q 040629 87 VTTLETVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWG 160 (786)
Q Consensus 87 ~~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg 160 (786)
....+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|..+=.. .... ... ..--+|
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~-----~n~~-~~~---~~~GW~ 123 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA-----FNAG-GPE---AAHGWA 123 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG-----G--S-STT---HHHHTS
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe-----eecC-CCC---cCceEE
Confidence 34566677777888999999999887774 444443 44566667777543221 1110 100 111111
Q ss_pred HHHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040629 161 LTLTVTGFPAVTWILGELK-LLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGL 239 (786)
Q Consensus 161 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~ 239 (786)
+-..|+.+-...++.=++ -.+..+....++-+++||+.+++++++... ++ -.+..++..++..++.
T Consensus 124 -IP~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~-i~~~~L~~a~~~~~~l-------- 190 (378)
T PF06965_consen 124 -IPMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG-ISLLWLLLAAAALLLL-------- 190 (378)
T ss_dssp -SSS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHHHHHHHHHHH--------
T ss_pred -ecccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC-CCHHHHHHHHHHHHHH--------
Confidence 122344444444444332 245667888999999999999999887653 21 1222222221111111
Q ss_pred HHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cch--------hHHHHHHHHHHHHH
Q 040629 240 EWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDL--------GALLFERFADFVSG 310 (786)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~--------~~~l~~~l~~~~~~ 310 (786)
|..+|.. .+....+..+..++- +....-|+|+.++..+.|+.+|. ++. -+++++++++.++.
T Consensus 191 -~~l~r~~------v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 191 -FVLNRLG------VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp -HHHHHTT---------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred -HHHHHCC------CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 2334431 233444443333222 22236799999999999999998 333 24788899999988
Q ss_pred hhHHHH-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhH
Q 040629 311 IMLPLF-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGIL 377 (786)
Q Consensus 311 l~~Plf-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v 377 (786)
+.+|+| |+-.|..++-..+. .-.....+++..+++|.+|.+..++.. +++|++-...|++-+.-=++
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTm 341 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTM 341 (378)
T ss_dssp THHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHH
T ss_pred hhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 88899988865544 233445677778899999998876653 45788888888854444467
Q ss_pred HHHHhhccccCCCCChhhH
Q 040629 378 AVVVLNLGWDKKVLHDQEY 396 (786)
Q Consensus 378 ~l~~~~~~~~~~~i~~~~~ 396 (786)
++.++..+.+.....++.-
T Consensus 342 SLFIa~LAF~~~~~~~~aK 360 (378)
T PF06965_consen 342 SLFIAGLAFDDPALQNAAK 360 (378)
T ss_dssp HHHHHHHHSTT-SSHHHHH
T ss_pred HHHHHHHHcCChhhhhHHH
Confidence 7888888887744444443
No 42
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.58 E-value=9.2e-07 Score=82.55 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCC-ce
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEH-NV 687 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~-~v 687 (786)
||++|..|.++++.++++|.+||+..+++++++++.+.... .. .. ..+...+..++.+++.++.....+ .+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~---~~---~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~ 72 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNH---SS---PS--QLEVNVQRARKLLRQAERIAASLGVPV 72 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCC---CC---cc--hhHHHHHHHHHHHHHHHHHhhhcCCce
Confidence 68999999999999999999999999999999999821110 00 00 001122333444444444322111 22
Q ss_pred EEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 688 NYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 688 ~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.+....-++..+.+ .+.+++.++||+++|++++. ++ ...-+|..-+-+...- +++||||+
T Consensus 73 ~~~~~~~~~~~~~I--~~~a~~~~~dlIV~G~~~~~-----~~----~~~~lGs~~~~v~~~~--~~pvlvv~ 132 (132)
T cd01988 73 HTIIRIDHDIASGI--LRTAKERQADLIIMGWHGST-----SL----RDRLFGGVIDQVLESA--PCDVAVVK 132 (132)
T ss_pred EEEEEecCCHHHHH--HHHHHhcCCCEEEEecCCCC-----Cc----cceecCchHHHHHhcC--CCCEEEeC
Confidence 22221113443333 33334567999999999642 22 2336888888888777 89999985
No 43
>PRK15456 universal stress protein UspG; Provisional
Probab=98.54 E-value=1e-06 Score=83.82 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=85.0
Q ss_pred ceEEEEecccCc--ChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC---cchhhhHHHHHHHHHhhc
Q 040629 607 MQHVVMVFIGGP--DDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID---GRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 607 ~~~I~v~f~Gg~--ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~~~ 681 (786)
.+||++|++|++ .++.|+++|.++|+.. .+++++++++.... ..........+ +..++..++.++++.++.
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSAS---LSLHRFAADVRRFEEHLQHEAEERLQTMVSHF 77 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccc---ccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 479999999994 7999999999999874 69999999832210 00000000000 122344445666666554
Q ss_pred CCCCceEEE-EEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 682 AGEHNVNYY-EKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 682 ~~~~~v~~~-e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
... ...++ ....+++.+++ ++.+++.+.||+|+|+||+ + +.+| -+|...+-++..- +|+||||.
T Consensus 78 ~~~-~~~v~~~v~~G~~~~~I--~~~a~~~~~DLIVmG~~g~-~-----~~~~----llGS~a~~v~~~a--~~pVLvV~ 142 (142)
T PRK15456 78 TID-PSRIKQHVRFGSVRDEV--NELAEELGADVVVIGSRNP-S-----ISTH----LLGSNASSVIRHA--NLPVLVVR 142 (142)
T ss_pred CCC-CcceEEEEcCCChHHHH--HHHHhhcCCCEEEEcCCCC-C-----ccce----ecCccHHHHHHcC--CCCEEEeC
Confidence 322 22222 12234555554 5545567899999999974 2 2222 4799999999888 99999984
No 44
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.54 E-value=5.2e-07 Score=84.23 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=84.3
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHH---HhhcCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEF---RLQTAG 683 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~---~~~~~~ 683 (786)
.+||+++++|+++++.|+++|.++|++.+++++++++.+.... ... ..... .+.....++....+. ......
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQ---YSF-SAAED-EESEEEAEEEEQARQAEAEEAEAE 76 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHC---HHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccc---ccc-ccccc-cccccccchhhhhhhHHHHHHhhh
Confidence 4799999999999999999999999999999999999932211 000 00000 000000000000000 000111
Q ss_pred CCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 684 EHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 684 ~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
.....+.....++..+.+ ++..++.++||+|+|++++ .++.+| -+|.+.+-++..- +++||||
T Consensus 77 ~~~~~~~~~~~~~~~~~i--~~~~~~~~~dliv~G~~~~-----~~~~~~----~~gs~~~~l~~~~--~~pVlvv 139 (140)
T PF00582_consen 77 GGIVIEVVIESGDVADAI--IEFAEEHNADLIVMGSRGR-----SGLERL----LFGSVAEKLLRHA--PCPVLVV 139 (140)
T ss_dssp TTSEEEEEEEESSHHHHH--HHHHHHTTCSEEEEESSST-----TSTTTS----SSHHHHHHHHHHT--SSEEEEE
T ss_pred ccceeEEEEEeeccchhh--hhccccccceeEEEeccCC-----CCccCC----CcCCHHHHHHHcC--CCCEEEe
Confidence 234555666667776655 5555567899999999863 222332 4899999999887 8999997
No 45
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.45 E-value=8.3e-05 Score=77.20 Aligned_cols=263 Identities=16% Similarity=0.187 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhccChhHHH---hcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHHHH
Q 040629 92 TVAYMALDLYIFLIGLEMDVNSIK---SSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLH--LPTDPSGCLFWGLTL 163 (786)
Q Consensus 92 ~l~~igl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~--~~~~~~~~l~lg~~l 163 (786)
.+-+--..+|.+.+|+|+..+.+. ++++++ ..-++.|++.|..+=. ++...-. ...|. +-
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~----~~n~~~p~~~~GWa--------IP 132 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYL----ALNAGDPATLEGWA--------IP 132 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhh----eeecCChhhhcCcC--------cc
Confidence 344444566778899999988875 344443 3445556666654321 1211100 01222 22
Q ss_pred hhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 164 TVTGFPAVTWILGEL-KLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWL 242 (786)
Q Consensus 164 s~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~ 242 (786)
+.|+.+-...++.=+ +..++.+.-..++-+++||.-++++.++... .+-+..+.....++ +++. -.
T Consensus 133 ~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~al~~a~~~-i~vL---------~~ 199 (390)
T COG3004 133 MATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMAALGIAALA-IAVL---------AV 199 (390)
T ss_pred cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHHHHHHHHHH-HHHH---------HH
Confidence 334444444444433 3357778888899999999999988877642 22222222221111 1111 11
Q ss_pred HHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-Cc----hhHHHHHHHHHHHHHhhHHHH-
Q 040629 243 IRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RD----LGALLFERFADFVSGIMLPLF- 316 (786)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~----~~~~l~~~l~~~~~~l~~Plf- 316 (786)
.+|.. +.....+++...++-.+.. .-|+|..++..+.|+.+|- .+ .-+++++.+.+.+..+.+|+|
T Consensus 200 lN~~~------v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFa 271 (390)
T COG3004 200 LNRLG------VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFA 271 (390)
T ss_pred HHHhC------chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHH
Confidence 22221 2223344555555544443 5699999999999999996 33 346778888888989999999
Q ss_pred HHHhhhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHhh
Q 040629 317 FAMCGIRTN---VHKVHNWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVLN 383 (786)
Q Consensus 317 F~~~G~~~d---~~~l~~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~~ 383 (786)
|.-.|..++ .+.+ .-.+.+.+++..+++|.+|.+..++.. +.+|++-...+++-+.-=.+++.+..
T Consensus 272 FaNAGvsl~g~~~~~l-~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 272 FANAGVSLQGVSLSGL-TSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred HccCCccccccccccc-ccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888776 3333 233456777888999999998887762 56889988888865544466777777
Q ss_pred ccccC
Q 040629 384 LGWDK 388 (786)
Q Consensus 384 ~~~~~ 388 (786)
.+.+.
T Consensus 351 LAf~~ 355 (390)
T COG3004 351 LAFGS 355 (390)
T ss_pred HhcCC
Confidence 77665
No 46
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.44 E-value=1.4e-06 Score=80.63 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=77.1
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceE
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVN 688 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~ 688 (786)
||+++++|++.+++|+++|.++|++.+++++++++.+.... ...+..++.++++++..... .+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~---------------~~~~~~~~~l~~~~~~~~~~-~~~ 64 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN---------------RLSEAERRRLAEALRLAEEL-GAE 64 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc---------------cCCHHHHHHHHHHHHHHHHc-CCE
Confidence 68999999999999999999999999999999999832210 01111233444444332211 233
Q ss_pred EEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 689 YYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 689 ~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
+....-++..+.+ .+..++.++|++++|.+++ .++.++ -+|...+-++..- .++.|||+
T Consensus 65 ~~~~~~~~~~~~I--~~~~~~~~~dllviG~~~~-----~~~~~~----~~Gs~~~~v~~~a-~~~~v~v~ 123 (124)
T cd01987 65 VVTLPGDDVAEAI--VEFAREHNVTQIVVGKSRR-----SRWREL----FRGSLVDRLLRRA-GNIDVHIV 123 (124)
T ss_pred EEEEeCCcHHHHH--HHHHHHcCCCEEEeCCCCC-----chHHHH----hcccHHHHHHHhC-CCCeEEEe
Confidence 3322223444444 4444467899999999964 222222 4677777776653 36777775
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=98.38 E-value=1.6e-06 Score=82.43 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=79.2
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC--cchhhhHHHHHHHHHhhcCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~ 684 (786)
.++|++++++.++++.||++|.++|+..++++|++++++......... .....+ +..++..++++++...+..
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 77 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFA---APMLEDLRSVMQEETQSFLDKLIQDAD-- 77 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhh---HHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 579999999999999999999999999999999999983211000000 000000 1112223344555544321
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
-.........++..+++ ++..++.++||+|+|+++. +++..+ +...+-++..- +++||||-
T Consensus 78 ~~~~~~~~~~G~~~~~I--~~~a~~~~~DLiV~g~~~~-----~~~~~~------~s~a~~v~~~~--~~pVLvv~ 138 (142)
T PRK10116 78 YPIEKTFIAYGELSEHI--LEVCRKHHFDLVICGNHNH-----SFFSRA------SCSAKRVIASS--EVDVLLVP 138 (142)
T ss_pred CCeEEEEEecCCHHHHH--HHHHHHhCCCEEEEcCCcc-----hHHHHH------HHHHHHHHhcC--CCCEEEEe
Confidence 01111122234455444 6666567899999999965 223322 23355555555 88999984
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.38 E-value=1.3e-06 Score=83.28 Aligned_cols=134 Identities=12% Similarity=0.178 Sum_probs=81.4
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC---cchhhhHHHHHHHHHhhcCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID---GRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~~~~~ 683 (786)
.+||+++.+|.++++.||++|..+|+..+++++++++...... ..........+ +..++...+.++++..+. +
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSD---LYTGLIDVNLGDMQKRISEETHHALTELSTNA-G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhh---hhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 5799999999999999999999999999999999999521100 00000000000 111122223344443321 1
Q ss_pred CCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEee
Q 040629 684 EHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQH 761 (786)
Q Consensus 684 ~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 761 (786)
-.+.......+++.+++ ++.+++.++||+|+|+|+. + |. .+|...+-+...- +++||||..
T Consensus 79 -~~~~~~~~~~G~p~~~I--~~~a~~~~~DLIV~Gs~~~------~---~~---~lgSva~~v~~~a--~~pVLvv~~ 139 (144)
T PRK15118 79 -YPITETLSGSGDLGQVL--VDAIKKYDMDLVVCGHHQD------F---WS---KLMSSARQLINTV--HVDMLIVPL 139 (144)
T ss_pred -CCceEEEEEecCHHHHH--HHHHHHhCCCEEEEeCccc------H---HH---HHHHHHHHHHhhC--CCCEEEecC
Confidence 11222222246666655 6666677899999999952 1 11 1566666666666 899999985
No 49
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.37 E-value=2.3e-06 Score=81.76 Aligned_cols=144 Identities=14% Similarity=0.194 Sum_probs=91.4
Q ss_pred cceEEEEEc-CCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 440 ELRILACVH-GVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 440 e~riLv~v~-~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
-.+++++++ +++......+.+...+.. ....++++++++............................++..+..++.
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 357999999 999999888888888755 45567788888655432221100000000000000112234455555554
Q ss_pred HhcCCceE-EEEeEEecCCCCh-HHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEe
Q 040629 519 ENRSTGIS-VHPLTAMSPFITM-HEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFV 595 (786)
Q Consensus 519 ~~~~~~v~-v~~~t~vs~~~~~-~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlv 595 (786)
.+. .++. ++.....+ +. .+.|++.|.+.++|+|+||.+++++. .+..+|++.++|++++||||.++.
T Consensus 83 ~~~-~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l------~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 83 AEA-AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGL------SRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHH-cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccc------cceeeehhHHHHHhcCCCCEEEEc
Confidence 444 3444 45555554 55 69999999999999999999955433 335699999999999999987653
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.15 E-value=2.8e-05 Score=71.58 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=77.7
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceE
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVN 688 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~ 688 (786)
+|++++.+++..+.++.+|.++|+..+.++|++++.+.... .. . ..++.+.+..++.+++++...... .+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~---~~---~--~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 71 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPS---SA---A--ELAELLEEEARALLEALREALAEA-GVK 71 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCC---cc---h--hHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 58999999999999999999999999999999999832211 00 0 000123344556777777653221 233
Q ss_pred EEEEEe-CChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 689 YYEKVV-NNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 689 ~~e~~v-~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
++...+ ++..+ ..++..++.++|++|+|+++.+. +.+ --.|.+.+.|...- +++||+|
T Consensus 72 ~~~~~~~~~~~~--~i~~~~~~~~~dlvvig~~~~~~-----~~~----~~~~~~~~~ll~~~--~~pvliv 130 (130)
T cd00293 72 VETVVLEGDPAE--AILEAAEELGADLIVMGSRGRSG-----LRR----LLLGSVAERVLRHA--PCPVLVV 130 (130)
T ss_pred eEEEEecCCCHH--HHHHHHHHcCCCEEEEcCCCCCc-----cce----eeeccHHHHHHhCC--CCCEEeC
Confidence 332232 33322 33555556789999999984311 111 13466666666543 5566553
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.97 E-value=0.0014 Score=69.30 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHh
Q 040629 98 LDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGE 177 (786)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e 177 (786)
+..++|-.|-++|++...+..||...+-+.-+.++.+++..++.++... + -+....+.+-++++.|.-..=..+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~--g-~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE--G-IFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc--c-ccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4568899999999999888888888887788888888888777777632 1 112256666677777777777777888
Q ss_pred cCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChh
Q 040629 178 LKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDS 257 (786)
Q Consensus 178 l~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~ 257 (786)
++- ++|.|-..+ ..++|.=-+.++++... ++- +.| .. .
T Consensus 128 yG~-~~d~gA~~~--~sl~~GPf~tm~aLga~-------------------------------gLA-~ip------~~-~ 165 (312)
T PRK12460 128 FGD-ERDVGAISI--LSLNDGPFFTMLALGAA-------------------------------GLA-NIP------IM-A 165 (312)
T ss_pred cCC-HhhhhHHhh--hhhccCcHHHHHHHHHH-------------------------------HHh-cCC------hH-H
Confidence 875 555553322 22333222222111111 011 110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHH
Q 040629 258 YLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLA 335 (786)
Q Consensus 258 ~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~ 335 (786)
+-+.+=+++.|+++.| .+ .+.+.+++-. .+.+|+|.+..|.++|++.+. .....
T Consensus 166 --------------------lv~lilpILiGmilGNld~---~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~G~~G 221 (312)
T PRK12460 166 --------------------LVAALLPLVLGMILGNLDP---DMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQAGLAG 221 (312)
T ss_pred --------------------HHHHHHHHHHHHHHhccch---hhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHhChHH
Confidence 0012334455666666 21 2223333333 458899999999999999887 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHH
Q 040629 336 GFVIILTCFCKILGTLLVSHSYHMPLQDRLALG--VLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPI 413 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~pl 413 (786)
+++.+...+.-...++...|++|.+.+.+..+| -.-+.-|...++.+. ...+.. .+.-++.+.+.++.|.+..|+
T Consensus 222 IlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~-~~~Ataqvaa~vivTail~P~ 298 (312)
T PRK12460 222 ILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPV-AAAATAQVAASVIVTAILTPL 298 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555666666688898888877776 432222322222222 111111 244555556666666666666
Q ss_pred H-Hhhccch
Q 040629 414 I-STMYRSS 421 (786)
Q Consensus 414 v-~~l~~~~ 421 (786)
+ .|.+|+.
T Consensus 299 ~t~~~~k~~ 307 (312)
T PRK12460 299 LTSWVAKKE 307 (312)
T ss_pred HHHHHHHHh
Confidence 5 5555543
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.96 E-value=0.035 Score=61.53 Aligned_cols=309 Identities=17% Similarity=0.105 Sum_probs=165.2
Q ss_pred CCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHH
Q 040629 53 RQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIP 132 (786)
Q Consensus 53 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip 132 (786)
.+|.++--++.|+++... |. +-++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+. ++..-.+.
T Consensus 24 ~l~~~vl~~~~~~~lsnl--gl------i~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g 94 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNL--GL------IDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVG 94 (378)
T ss_pred hcCHHHHHHHHHHHHHHC--CC------cCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHH
Confidence 378888888899998864 33 1123445677888888888888888899999999999988764 44444555
Q ss_pred HHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhcc------HHHHHHHHHhcCccCChhHHHHHHHHHH-HHHHHHHHHH
Q 040629 133 MGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTG------FPAVTWILGELKLLQTDIGRLATSIAMI-SDVCSWILVA 205 (786)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts------~~vv~~iL~el~ll~s~~g~l~ls~a~i-~D~~~~~ll~ 205 (786)
..+|+.+++++.+...+. ...-++.+++-|- +..+... ++. + .. ..+.++. |.+..-+.+.
T Consensus 95 ~viG~~va~~l~~~~l~~----~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~-~~-~~~a~~aaDnv~~~~~~~ 162 (378)
T PF05684_consen 95 TVIGAVVAFLLFGGFLGP----EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S-DS-LFAAALAADNVVMALWFA 162 (378)
T ss_pred HHHHHHHHHHHHhhcccc----hHHHHHHHHHhcccCchhHHHHHHHH---HCC---C-HH-HHHHHHHHHHHHHHHHHH
Confidence 566777776666532111 2222333333321 2223332 232 2 23 3444444 4444434444
Q ss_pred HHHHHhcCCCc-hHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCc-
Q 040629 206 VVLPIRSSPEN-APA-----AIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGT- 278 (786)
Q Consensus 206 ~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~- 278 (786)
+...+...... .-| .-... .-.-..+...+. .++.....+...+.+.+....+++.++-
T Consensus 163 ~l~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~l~~~la~a~~v~~~s~~la~~ 228 (378)
T PF05684_consen 163 FLLALPPFARKFDRWTKADTSSIEA-------------LEEEIEAEEAEW-ARKPISQDLAFLLAVAFAVVALSHALAAW 228 (378)
T ss_pred HHHHHhhhhHHhhhccCCCccccch-------------hhhhhhhhhhcc-ccCCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332210000 000 00000 000000000000 0001112233334444433333332221
Q ss_pred ------------hhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHH
Q 040629 279 ------------FSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCK 346 (786)
Q Consensus 279 ------------~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~~~~~~~~ii~~~~~~K 346 (786)
-.++-....|++..-+|..+.+ .--+.+. .+++-+||+.+|++.|+..+..-+..+++.++.+..-
T Consensus 229 l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH 306 (378)
T PF05684_consen 229 LPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDAPSLFLFGFIILAIH 306 (378)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHhHHHHHHHHHHHHHH
Confidence 1233344556666556655554 4445555 7788889999999999988873222344555566778
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHH
Q 040629 347 ILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVM 399 (786)
Q Consensus 347 ~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~l 399 (786)
.+..++.++++|.|..+...-+- -|.-|..+......+++..+..+-+...+
T Consensus 307 ~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL~gv 358 (378)
T PF05684_consen 307 LLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVLMGV 358 (378)
T ss_pred HHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHHHHH
Confidence 88899999999999977666554 46666666655555655555555444443
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.96 E-value=5.5e-05 Score=82.59 Aligned_cols=125 Identities=10% Similarity=0.107 Sum_probs=80.4
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCC--CeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANP--SVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~--~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 683 (786)
..+||++|++|++.++.|+++|..+|+.. +++++++++++..... .. . +...+..++.+++.++....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~--~~-------~-~~~~~~~eelle~~~~~~~~ 73 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD--PE-------G-QDELAAAEELLERVEVWATE 73 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc--cc-------h-hHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999884 6999999999321110 00 0 11112233344444432211
Q ss_pred -----CCceEEEEEEe---------CChHHHHHHHHHhhhcCccEEEEccC-CCCcccccccCCcCCCCccccchhhhhc
Q 040629 684 -----EHNVNYYEKVV---------NNREETTGALREMELQKVGLYIVGRE-VMASAATADLLGWSECPEIGAIGDLLVY 748 (786)
Q Consensus 684 -----~~~v~~~e~~v---------~~~~e~~~~i~~~~~~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG~igd~las 748 (786)
...+.+...++ +++.|++ ++.+++.++||||||.. ... ...|-|-+++--|+.
T Consensus 74 ~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~I--v~~Aee~~aDLIVm~~~~~~~----------~~~~~~~~~~~~~~~ 141 (357)
T PRK12652 74 DLGDDASSVTIETALLGTDEYLFGPGDYAEVL--IAYAEEHGIDRVVLDPEYNPG----------GTAPMLQPLERELAR 141 (357)
T ss_pred hhhcccCCCceEEEEEeccccccCCCCHHHHH--HHHHHHcCCCEEEECCCCCCC----------CCCcccchHHHHHHh
Confidence 12344444443 4677766 77776789999999997 211 224557777777877
Q ss_pred CCCC
Q 040629 749 SDFI 752 (786)
Q Consensus 749 ~~~~ 752 (786)
.+..
T Consensus 142 ~~~~ 145 (357)
T PRK12652 142 AGIT 145 (357)
T ss_pred cCCc
Confidence 7755
No 54
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.72 E-value=0.00024 Score=77.61 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|+|++++...+++.+..+++..+...+++++|+++....... .. ......+++.+..++..+
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~------~~-------~~~~~~eelle~~~~~~~ 72 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE------GQ-------DELAAAEELLERVEVWAT 72 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc------hh-------HHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999854213579999999974221100 00 000112333333333322
Q ss_pred c-----CCceEEEEeEEec-----CCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCc
Q 040629 521 R-----STGISVHPLTAMS-----PFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCS 590 (786)
Q Consensus 521 ~-----~~~v~v~~~t~vs-----~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCs 590 (786)
. ..+++++..+... ...++++.|+++|++.++|+|||+-..+. +.+..+++.+ +.=|.++-|.
T Consensus 73 ~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~------~~~~~~~~~~-~~~~~~~~~~ 145 (357)
T PRK12652 73 EDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP------GGTAPMLQPL-ERELARAGIT 145 (357)
T ss_pred HhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCcccchH-HHHHHhcCCc
Confidence 1 1467777777552 11589999999999999999999876443 2233344444 3445555555
No 55
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.62 E-value=0.042 Score=60.79 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=57.0
Q ss_pred CchhHHHHHHHhHhcCC--Cch-hHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHH-HHHHHHHHHHHHHHHHHH
Q 040629 277 GTFSIVGAFVFGIIMPD--RDL-GALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWF-LAGFVIILTCFCKILGTL 351 (786)
Q Consensus 277 g~~~~lgafvaGl~~~~--~~~-~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~-~~~~ii~~~~~~K~i~~~ 351 (786)
.+....+|++.|+++.+ ... ..++..+.-....++.+-+|.+..=+.+++..+. .+. +++++++-.++.=+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988 221 1123333333444666677777777888888887 333 333334444444555667
Q ss_pred HHHHhcCCChHHHHHHHH
Q 040629 352 LVSHSYHMPLQDRLALGV 369 (786)
Q Consensus 352 l~~~~~~~~~~~~~~lgl 369 (786)
+..|.+|-++ |+..+++
T Consensus 326 v~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HhhhhhCCCh-hHHHHhh
Confidence 7778888886 5555544
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.49 E-value=0.04 Score=59.66 Aligned_cols=123 Identities=13% Similarity=0.170 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhC-----chhHHHHHHHhHhcCC--Cc-hhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--H
Q 040629 262 FLIGVVICSFVTEVTG-----TFSIVGAFVFGIIMPD--RD-LGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--N 331 (786)
Q Consensus 262 il~~~l~~~~~a~~~g-----~~~~lgafvaGl~~~~--~~-~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~ 331 (786)
+.+.+...+++.++++ +....++++.|.++.+ .. ...++.++.-+...+.-+-+|.++.=|++.+..+. .
T Consensus 227 i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~ 306 (404)
T COG0786 227 IAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLA 306 (404)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444456666665 5678899999999998 22 12224444444444888888988888999988887 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhh-hhhHHHHHhhc
Q 040629 332 WFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNT-KGILAVVVLNL 384 (786)
Q Consensus 332 ~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~-rG~v~l~~~~~ 384 (786)
..+.+++.+-..+--+.+.+...|..|-++..+..-++-++. -|...-+++++
T Consensus 307 lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 307 LPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 444455555555566777778888899888777664443332 25555666654
No 57
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.29 E-value=0.03 Score=59.09 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchHHHHHHHHHhhccHHHHHHH
Q 040629 97 ALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPT--DPSGCLFWGLTLTVTGFPAVTWI 174 (786)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~--~~~~~l~lg~~ls~Ts~~vv~~i 174 (786)
-+..++|-.|-++|++...+..||-..+-+.-+++..+++..+..++........ .....+.+-++++.+....=..+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL 129 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLAL 129 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHH
Confidence 3456889999999999999999998888888888888888888777764210000 12266777777788887777788
Q ss_pred HHhcCccCChhH
Q 040629 175 LGELKLLQTDIG 186 (786)
Q Consensus 175 L~el~ll~s~~g 186 (786)
..|++- ++|.|
T Consensus 130 ~~~yGd-~~D~g 140 (314)
T PF03812_consen 130 MGQYGD-EEDVG 140 (314)
T ss_pred HHHhCC-HHHhH
Confidence 888775 45544
No 58
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.25 E-value=0.21 Score=53.39 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHh----
Q 040629 89 TLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLT---- 164 (786)
Q Consensus 89 ~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls---- 164 (786)
.++..-.+++.++||..|+.+..+++++..|+... -+.+...+|++.=.+++.+...+ +.+ .-+..|..+.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~~~-~l~---~~l~~Gl~ll~~~P 109 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAKLF-PLP---PELAVGLLLLGCCP 109 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHHHc-CCC---HHHHHhHHheeeCC
Confidence 44445578899999999999999999866544332 22333344444444444444333 222 3455555443
Q ss_pred -hccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 165 -VTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIR 211 (786)
Q Consensus 165 -~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~ 211 (786)
.|+. .+...+. +.+ --.+++.+.++.+++.++.-+...+.
T Consensus 110 ggv~S-~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 110 GGVAS-NAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred CchhH-HHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2222222 222 24556677788888887776655543
No 59
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.24 E-value=0.36 Score=52.52 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=78.9
Q ss_pred HcccCCChhHHHHHHHHhhCccCC-CccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 040629 49 LRPLRQPRLVTDILGGLLLGPSFF-GRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAA 127 (786)
Q Consensus 49 ~~rl~~P~iv~~ilaGiilGP~~l-g~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 127 (786)
+++.+++..+--++.|+++|+... +.+. ..-| .....-+.+-++|+++ .|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHH
Confidence 455789999999999999998542 2210 0111 1112345666777764 59999999999999988777666
Q ss_pred HHHHHHHHHHHHH-HHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 040629 128 GALIPMGVGAGLF-FLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAV 206 (786)
Q Consensus 128 ~~~ip~~~~~~~~-~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~ 206 (786)
.+..++.++..++ ..+. .+.. .++++++--|+.....+...-.-.|-.+.+ -..+++.-.+=+.++.+++-.
T Consensus 98 ~v~~~~~~~~~~g~k~l~-----l~~~-~~~Lia~GtsICGaSAi~A~a~~i~A~~~~-~a~ava~V~lfgt~am~l~P~ 170 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLK-----LDKQ-MSILLGAGSSICGAAAVAAIEPVIKAEKEK-VSVAIAIVVIFGTTGIFLYPS 170 (335)
T ss_pred HHHHHHHHHHHHHHHHhC-----CChh-HHHHHHcchhHHHHHHHHHhccccCCCccc-eeeeehHHHHHHHHHHHHHHH
Confidence 6666666555444 2332 2222 455555444333222222221112332233 234444444445555555544
Q ss_pred HH
Q 040629 207 VL 208 (786)
Q Consensus 207 ~~ 208 (786)
+.
T Consensus 171 l~ 172 (335)
T TIGR00698 171 IY 172 (335)
T ss_pred HH
Confidence 43
No 60
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.23 E-value=0.22 Score=55.59 Aligned_cols=290 Identities=17% Similarity=0.172 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHcccCCChh-HHHHHH--HHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHH
Q 040629 31 LIVQLAFIITITRSLYF---ILRPLRQPRL-VTDILG--GLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFL 104 (786)
Q Consensus 31 ~l~~i~lil~~~~~~~~---l~~rl~~P~i-v~~ila--GiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~ 104 (786)
.+.-.++++++++.+.. ++||+.+|.. +|-+++ ++.++|..++.. .-|+. . +-+.-+.++.=.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~----~~fd~----~---l~~~lm~~fFat 76 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTE----VNFDF----S---LRDPLMLIFFTT 76 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEE----EEcCh----h---HHHHHHHHHHHH
Confidence 34445566666666643 5788999974 444443 455577765540 11321 1 223334444446
Q ss_pred HhhccChhHHHhcchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCcc
Q 040629 105 IGLEMDVNSIKSSSKRELNIAAA---GALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLL 181 (786)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~ia~~---~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll 181 (786)
+|+..+++.+||-+|+....... ......++|..++..+. .+ -.+|...-. ..+
T Consensus 77 igLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~g-----l~-----P~~Gll~gs------------i~~- 133 (398)
T TIGR00210 77 IGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLG-----QA-----PLMGLLAGS------------ITL- 133 (398)
T ss_pred hhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CC-----hHHHHHhhC------------ccC-
Confidence 88899999999988887555444 33444455555543332 11 111222100 111
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CC------
Q 040629 182 QTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGN---NN------ 252 (786)
Q Consensus 182 ~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~---~~------ 252 (786)
..-.|+-+--...+.+-.+|.-- ..+.. ..+..-.+....+..|+.+|..||..-.. .+
T Consensus 134 ~GGHGTAaA~g~~f~e~~G~~~a-----------~~lgl-a~AT~GLv~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~ 201 (398)
T TIGR00210 134 SGGHGTGAAWSPVFYDNYGFRNA-----------TEIAI-ACATFGLVFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTI 201 (398)
T ss_pred CCCCcHHHHHHHHHHHHcCchhH-----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccc
Confidence 11122222111112111111000 00111 11111223344566788888887752210 00
Q ss_pred ----CC-Ch-h---H----HHHHHHHHHHHHHHHHHh-----CchhHHHHHHHhHhcCC--Cchh-HHHHHHHHHHHHHh
Q 040629 253 ----AY-SD-S---Y----LCFFLIGVVICSFVTEVT-----GTFSIVGAFVFGIIMPD--RDLG-ALLFERFADFVSGI 311 (786)
Q Consensus 253 ----~~-~~-~---~----~~~il~~~l~~~~~a~~~-----g~~~~lgafvaGl~~~~--~~~~-~~l~~~l~~~~~~l 311 (786)
+. .+ . . +.++.+...+.+++.+.+ .+....+|++.|+++.+ ...+ .++.++.-+...++
T Consensus 202 ~~~~~~~~~~~~~~~~i~~l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~ 281 (398)
T TIGR00210 202 GFERPQDNRQITYNSLIETIALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNV 281 (398)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHH
Confidence 00 01 0 0 122222222333444443 46788999999999998 2221 22333444445577
Q ss_pred hHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHH
Q 040629 312 MLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKI-LGTLLVSHSYHMPLQDRLAL 367 (786)
Q Consensus 312 ~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~-i~~~l~~~~~~~~~~~~~~l 367 (786)
.+-+|.+..=+.+++..+. .+.-.+++.+..++.-. ...++.-+..|-+ -|+-.+
T Consensus 282 sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 282 SLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccch-HHHHHH
Confidence 7888888888999999888 55544445444444444 4455666777766 566553
No 61
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.46 Score=50.82 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=93.2
Q ss_pred ChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHH---HHHHHHH
Q 040629 55 PRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNI---AAAGALI 131 (786)
Q Consensus 55 P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~i 131 (786)
+-+.-.+++|+.+|-...+. .+.+ ...+....+.--.+|+++.|+-.=+++|++++++..|+.-.+ -+..+++
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~---~~~l-~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii 93 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGL---AQLL-GKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHHHhcccch---hhhc-ccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33556778888888554332 0000 001223345555688888888888999999998766543222 2222233
Q ss_pred HHHHHHHHHHHHHhhhcCCCCch-HHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 132 PMGVGAGLFFLTARLLHLPTDPS-GCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPI 210 (786)
Q Consensus 132 p~~~~~~~~~~l~~~~~~~~~~~-~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~ 210 (786)
-=++.+++++++.+.. +... ..+++|.+=++ |-..+-. ++.+.+ -..++..-.+||.+.+++++....+
T Consensus 94 ~P~lm~~la~~fl~~~---pey~~GlILlglApC~-aMVivw~-----~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 94 GPLLMFALAWFFLPDE---PEYRAGLILLGLAPCI-AMVIVWS-----GLAKGD-RELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhhH-HHHHHHH-----hhccCc-HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2223333444444211 1000 23333333222 2222222 333333 2455566678999999888665443
Q ss_pred hcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 211 RSSP---ENAPAAIISTIAFSLTCIYAVRPGLEWLIRRT 246 (786)
Q Consensus 211 ~~~~---~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~ 246 (786)
.-+. .-+++.++..+...+.+-++.+.+.+++..|.
T Consensus 164 ~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 164 FLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 22667777666666666666666666666654
No 62
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.04 E-value=0.0094 Score=56.56 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=87.7
Q ss_pred cceEEEEecc-cCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccc-ccc----ccCcchhhhHHHHHHHHHh
Q 040629 606 RMQHVVMVFI-GGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIR-YSK----CIDGRQSQVDAEFVNEFRL 679 (786)
Q Consensus 606 ~~~~I~v~f~-Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~d~~~l~~~~~ 679 (786)
..++|+++++ |.+..+.|++.|...+...+..++++.+.+..... ..... ... .......+..++.+++.++
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPT--ALVSVALADAPIPLSEEELEEEAEELLAEAKA 81 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccc--cccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3579999999 99999999999999999999999988887211100 00000 000 0001223444566666655
Q ss_pred hcCCCCce-EEEEEEeCCh-HHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEE
Q 040629 680 QTAGEHNV-NYYEKVVNNR-EETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVL 757 (786)
Q Consensus 680 ~~~~~~~v-~~~e~~v~~~-~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svL 757 (786)
.....+.. .-.+...+++ .+.+ ++..+++++||+++|.+++ .++.+ =-||..-+.++... +++||
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~i--~~~a~~~~adliV~G~~g~-----~~l~~----~llGsvs~~v~~~~--~~pVl 148 (154)
T COG0589 82 LAEAAGVPVVETEVVEGSPSAEEI--LELAEEEDADLIVVGSRGR-----SGLSR----LLLGSVAEKVLRHA--PCPVL 148 (154)
T ss_pred HHHHcCCCeeEEEEecCCCcHHHH--HHHHHHhCCCEEEECCCCC-----ccccc----eeeehhHHHHHhcC--CCCEE
Confidence 44332222 1233334555 4555 3333356899999999854 22222 35788888888888 99999
Q ss_pred EEee
Q 040629 758 VVQH 761 (786)
Q Consensus 758 vvqq 761 (786)
|+..
T Consensus 149 vv~~ 152 (154)
T COG0589 149 VVRS 152 (154)
T ss_pred EEcc
Confidence 9975
No 63
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.89 E-value=0.59 Score=50.64 Aligned_cols=112 Identities=23% Similarity=0.222 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhcc
Q 040629 91 ETVAYMALDLYIFLIGLEMDVNSIKSSSKRE---LNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTG 167 (786)
Q Consensus 91 ~~l~~igl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts 167 (786)
+....+++..++|..|+.++.+++++..|+. ...-...+++.-++++++........ + ..+..|......-
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-~-----~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-P-----PELALGLLILACL 103 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-C-----HHHHHHHHHHhhC
Confidence 4666778888889999999999998654443 32223333333333444444443211 1 2344443332222
Q ss_pred HHHHHH--HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 168 FPAVTW--ILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIR 211 (786)
Q Consensus 168 ~~vv~~--iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~ 211 (786)
|+.+.. .+.+.- +.+ -..++..+.++.+++.++.-+...+.
T Consensus 104 PtTv~S~v~~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 104 PTTVSSSVVLTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLL 146 (313)
T ss_pred CchhhHHHHHHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 221111 122222 232 24566677788888887776555543
No 64
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.83 E-value=0.88 Score=49.67 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh-hhHHHHHhhcc
Q 040629 339 IILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTK-GILAVVVLNLG 385 (786)
Q Consensus 339 i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~r-G~v~l~~~~~~ 385 (786)
+++..+.-+...+..++..|.+.+|+..+.+--+.| +...+.++...
T Consensus 252 v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~ 299 (328)
T TIGR00832 252 LLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISL 299 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHh
Confidence 334455566777788899999999999998887777 45555555543
No 65
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.56 E-value=0.13 Score=54.05 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=60.8
Q ss_pred HHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccHHHHHHHH
Q 040629 98 LDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLP--TDPSGCLFWGLTLTVTGFPAVTWIL 175 (786)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~--~~~~~~l~lg~~ls~Ts~~vv~~iL 175 (786)
+..++|-.|-++|++...+..||...+-+.-+.+..+++..++.++....... -.....+.+-++++.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45588899999999998888888777777788888888887777776320000 0112566666677777766666777
Q ss_pred HhcCccCChhHH
Q 040629 176 GELKLLQTDIGR 187 (786)
Q Consensus 176 ~el~ll~s~~g~ 187 (786)
.|++- ++|.|-
T Consensus 131 ~qyGd-~~D~gA 141 (314)
T TIGR00793 131 QQYGT-KEEAGA 141 (314)
T ss_pred HHcCC-Hhhhhh
Confidence 77775 555553
No 66
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.47 E-value=0.093 Score=62.42 Aligned_cols=131 Identities=14% Similarity=0.055 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhH-HHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHH
Q 040629 259 LCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGA-LLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAG 336 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~-~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~ 336 (786)
+.+.+..+.+...++..+|+++++|=.++|+++...-++- .-.+.++.+. ++-+.++...+|+.+|+..+. ....++
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~la-elGvv~LlF~iGLEl~~~~l~~~~~~~~ 88 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFA-EFGVVLMLFVIGLELDPQRLWKLRRSIF 88 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 4555666677778888999999999999999996411110 1123345554 677778888999999998887 332222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCC
Q 040629 337 FVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLH 392 (786)
Q Consensus 337 ~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~ 392 (786)
.+...-++.-.+..+..++++|.+|..++.+|..+..-.. .+ ...+..|.+.+.
T Consensus 89 ~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l~ 142 (621)
T PRK03562 89 GGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhcccc
Confidence 2222222223334445667789999999999987655432 22 244444444433
No 67
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.44 E-value=1.7 Score=46.54 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh-hhHHHHHhhccc
Q 040629 340 ILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTK-GILAVVVLNLGW 386 (786)
Q Consensus 340 ~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~r-G~v~l~~~~~~~ 386 (786)
++..+.-+...++.++.+|.+.+|+..++.-.+.| +...+.++....
T Consensus 202 ~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 202 ILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 33345556667777888899988888888777776 456666665544
No 68
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.41 E-value=0.71 Score=49.68 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=81.7
Q ss_pred cccCCChhHHHHHHHHhhCccCCCc-cccccccccCCchh-HHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 040629 50 RPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSVT-TLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAA 127 (786)
Q Consensus 50 ~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~~-~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 127 (786)
+...++..+--++.|+++|+..++. +.+. +..+ .-+.+-++|+++ .|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~------~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK------PGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH------hHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHH
Confidence 3467889999999999999733444 2111 1222 234666777764 59999999999999988888777
Q ss_pred HHHHHHHHHHHHH-HHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 040629 128 GALIPMGVGAGLF-FLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAV 206 (786)
Q Consensus 128 ~~~ip~~~~~~~~-~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~ 206 (786)
.+...+.++..++ ..+. .+.. .+.++++-.|+.....+...-.-.|-.+.+. ..+++.-.+=..++.+++-.
T Consensus 92 ~v~~~~~~~~~lg~r~~~-----l~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~-a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFG-----LDRK-LAILIAAGTSICGASAIAATAPVIKAKEEDV-AYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHhC-----CCHH-HHHHHHhhcccchHHHHHHHcccccCCCCce-eeeehHHHHHHHHHHHHHHH
Confidence 7777777766555 3333 2222 5666665555443333332222223323332 33344444444444444444
Q ss_pred H
Q 040629 207 V 207 (786)
Q Consensus 207 ~ 207 (786)
+
T Consensus 165 l 165 (305)
T PF03601_consen 165 L 165 (305)
T ss_pred H
Confidence 3
No 69
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.32 E-value=0.13 Score=54.68 Aligned_cols=127 Identities=17% Similarity=0.271 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhH-HHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHH
Q 040629 265 GVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGA-LLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILT 342 (786)
Q Consensus 265 ~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~-~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~ 342 (786)
.....+.+++.++++.+++-.++|+++...-++. .-.+.++.+. .+-+.++....|+++|++.+. .+.....+.+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999997521110 1112344444 666778888999999999887 554444444444
Q ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChh
Q 040629 343 CFCK-ILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQ 394 (786)
Q Consensus 343 ~~~K-~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~ 394 (786)
++.- ++..+...++.+.++.+++.+|..+.+-. .-+.+.+..|.+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~ 132 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTP 132 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccCh
Confidence 4444 44455567788999999999999877653 23444455555555543
No 70
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.17 E-value=0.17 Score=60.11 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHH
Q 040629 259 LCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLA 335 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~ 335 (786)
..+.++...++..++..+|+++++|=.++|+++.. -..-. -.+.++.+. .+-+.++...+|+++|++.+. ....+
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~la-elGvv~LLF~iGLel~~~~l~~~~~~~ 87 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHFS-ELGVVFLMFIIGLELNPSKLWQLRRSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44455556666778889999999999999999865 11111 113344444 666777788899999998886 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhh
Q 040629 336 GFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNT 373 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~ 373 (786)
+.+....++.-.+..+....+.|++|..++.+|..+..
T Consensus 88 ~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 88 FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22222222222222223445568899999988875543
No 71
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.14 E-value=0.18 Score=59.49 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhH-HHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHH
Q 040629 260 CFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGA-LLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGF 337 (786)
Q Consensus 260 ~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~-~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ 337 (786)
..+++.+++++.++..++++.++|=.++|+++...-++. .-.+.++.+. .+-+.++....|+++|++.+. .......
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la-~lGli~llF~~Gle~d~~~l~~~~~~~~~ 90 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELA-ELGVILLMFGVGLHFSLKDLMAVKSIAIP 90 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHH-HHHHHHHHHHhHhcCCHHHHHHHhhHHHH
Confidence 334566677778888899999999999999996511110 0113344444 666677778889999998876 2222221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhh
Q 040629 338 VIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQE 395 (786)
Q Consensus 338 ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~ 395 (786)
..+...+.-++..+.....+++++.+++.+|..++.-.. .+++....|.|.++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 91 GAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 122222223334445566778999999999987666332 45556666777666533
No 72
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.99 E-value=3 Score=45.20 Aligned_cols=298 Identities=14% Similarity=0.123 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCh--hHH-HHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 040629 31 LIVQLAFIITITRSLYFILRPLRQPR--LVT-DILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGL 107 (786)
Q Consensus 31 ~l~~i~lil~~~~~~~~l~~rl~~P~--iv~-~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gl 107 (786)
...|.++.++++...++++..+++|. ..| -+++|++.+-..... -.| ..+...|.+.+=-.+|.
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l------~~P-------~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTL------PLP-------RGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccc------cCC-------hHHHHHHHHHHHHHHhh
Confidence 46778888999999999999988765 566 777777777322111 112 34455566666667899
Q ss_pred ccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 040629 108 EMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGR 187 (786)
Q Consensus 108 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 187 (786)
.+..+.+... ++.+.+.....+++...+...+|++.+.. .++...-++|. ++-.......+-+|.|. |.+.-.
T Consensus 74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~---~~~~~Ta~~gs--~PGgas~m~~iA~d~gA-d~~~VA 146 (352)
T COG3180 74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS---ILPGNTAFLGS--SPGGASAMVSIAQDYGA-DLRLVA 146 (352)
T ss_pred hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc---CCCcchhhHhc--CCchHHHHHHHHHHhCC-ChhHHH
Confidence 9888777432 23333444445556666666666665532 11111222221 11111222222244443 332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCChhHHHHHH
Q 040629 188 LATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKG----NNNAYSDSYLCFFL 263 (786)
Q Consensus 188 l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~----~~~~~~~~~~~~il 263 (786)
+..+ +-.+.++...-++.+.... .++.-++ -+.+.....+.+.+
T Consensus 147 l~Q~------------------------------lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~ 194 (352)
T COG3180 147 LMQY------------------------------LRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLI 194 (352)
T ss_pred HHHH------------------------------HHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHH
Confidence 1111 1111111111122221110 0000000 00111111244445
Q ss_pred HHHHHHHHHHHHhCch--hHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----HHHHHH
Q 040629 264 IGVVICSFVTEVTGTF--SIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----NWFLAG 336 (786)
Q Consensus 264 ~~~l~~~~~a~~~g~~--~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~~~~~~ 336 (786)
...++.+.++..+++. .++|+++.|..+.- ....-++-+-+. .+-.-+.-..+|.++|-..+. .....+
T Consensus 195 ~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 195 LAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHH
Confidence 5555566666666553 57788888777765 322222222111 222334556789999876665 233345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhcccc
Q 040629 337 FVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWD 387 (786)
Q Consensus 337 ~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~ 387 (786)
+.++..++.-....++.+++.+.++.+++. + .+|-|.-+++......+
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L-a--~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNTAYL-A--TSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-H--cCCCcHHHHHHHHHHcC
Confidence 555666666777788888889999977643 3 57888877777666554
No 73
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.98 E-value=3.5 Score=45.81 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHhhhh-cccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHH
Q 040629 294 RDLGALLFERFADFVSGIMLPLFFAMCGIR-TNVHKVH---NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQD-RLALG 368 (786)
Q Consensus 294 ~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~-~d~~~l~---~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~-~~~lg 368 (786)
|+.-++-..+...+...-+.+-..+-+|+. +|+..+. ++. .+++++...++-.+++++.+++.|+-+-| ++.-|
T Consensus 291 P~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaG 369 (414)
T PF03390_consen 291 PESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAG 369 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh
Confidence 333444455666666677777777888888 9988887 343 35566666778889999999999975555 56667
Q ss_pred HHhhhhh-hHHHHHhhccccCCCCCh
Q 040629 369 VLMNTKG-ILAVVVLNLGWDKKVLHD 393 (786)
Q Consensus 369 l~l~~rG-~v~l~~~~~~~~~~~i~~ 393 (786)
+.++.+| .=++++.+.+...+++.-
T Consensus 370 LC~an~GGtGDvAVLsAa~RM~LmpF 395 (414)
T PF03390_consen 370 LCMANMGGTGDVAVLSAANRMELMPF 395 (414)
T ss_pred hcccCCCCCCcchheehhhhcccccH
Confidence 6887774 556777777776666653
No 74
>PRK10490 sensor protein KdpD; Provisional
Probab=95.86 E-value=0.043 Score=68.14 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=86.5
Q ss_pred CCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHH
Q 040629 438 GAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEA 517 (786)
Q Consensus 438 ~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 517 (786)
...-|||||++++.+.+.+++-+..++.. .+...+++||.....+.. ..+..+++.+.++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~~-----------------~~~~~~~l~~~~~- 307 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHRL-----------------PEKKRRAILSALR- 307 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCcC-----------------CHHHHHHHHHHHH-
Confidence 35568999999999999999998888866 567799999874211100 1112345555554
Q ss_pred hHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCC-CceEEEe
Q 040629 518 FENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAP-CSVGIFV 595 (786)
Q Consensus 518 ~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~Ap-CsVgIlv 595 (786)
.++. -+..+... .+ +++++.|.++|++++++.||||-+++.+. ..-+++.+++++.+| -+|-|+-
T Consensus 308 lA~~-lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~--------~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 308 LAQE-LGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW--------WRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HHHH-cCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC--------ccCCCHHHHHHHhCCCCCEEEEe
Confidence 4444 23333322 23 68999999999999999999998754321 113588999999999 7776653
No 75
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.84 E-value=0.39 Score=51.67 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHH----HhCchhHHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HH
Q 040629 261 FFLIGVVICSFVTE----VTGTFSIVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NW 332 (786)
Q Consensus 261 ~il~~~l~~~~~a~----~~g~~~~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~ 332 (786)
+.+++.....++++ ..++++.+=|.+.|+++.| ....+.+..-++.. ...++.+=.++.|.++++..+. .+
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~G~ 83 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILALGW 83 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHhCc
Confidence 34444444445544 3577888889999999997 33444444444433 3678888899999999999887 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccC
Q 040629 333 FLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDK 388 (786)
Q Consensus 333 ~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~ 388 (786)
...+..++...+.=.++.++..+.+|++.+.+..++...+.=|.-.++...-..+.
T Consensus 84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 33344444444444444555559999999999999998777777666666544443
No 76
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.66 E-value=4.1 Score=44.18 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred HHHHHHHH-HHhhHHHHHHHhhhh-cccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHhhhh
Q 040629 301 FERFADFV-SGIMLPLFFAMCGIR-TNVHKVH---NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLAL-GVLMNTK 374 (786)
Q Consensus 301 ~~~l~~~~-~~l~~PlfF~~~G~~-~d~~~l~---~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~l-gl~l~~r 374 (786)
..++..+. ..+.-|+.+ .+|.. +|+..+. +|.. .++.+...++-..+.++.+|+.|+-+-|+-.. |++|+.+
T Consensus 317 A~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~ 394 (438)
T COG3493 317 AKQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANM 394 (438)
T ss_pred HHHHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCC
Confidence 33444443 344445544 45555 8887776 4443 34445556777888999999999765555544 5999888
Q ss_pred hh-HHHHHhhccccCCCCCh
Q 040629 375 GI-LAVVVLNLGWDKKVLHD 393 (786)
Q Consensus 375 G~-v~l~~~~~~~~~~~i~~ 393 (786)
|. -++++.+..-..++++-
T Consensus 395 GGtGDvaVLsAa~RM~LmpF 414 (438)
T COG3493 395 GGTGDVAVLSAADRMELMPF 414 (438)
T ss_pred CCCCchHHhhhcchhccccH
Confidence 54 56777776666666664
No 77
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.63 E-value=0.24 Score=58.41 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchh---HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHH
Q 040629 261 FFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLG---ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAG 336 (786)
Q Consensus 261 ~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~---~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~ 336 (786)
+++++...++.++..+|++.+++-.++|+++.....+ ..-.+-.+.+ ..+.+++.....|+++|+..+. .+..++
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~ 91 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRPALGPAL 91 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 4444555666777888999999999999998762111 1111223344 4888999999999999999988 555554
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHhhhhhhH
Q 040629 337 FVIILTCFCKILG-TLLVSHSYHMPLQDRLALGVLMNTKGIL 377 (786)
Q Consensus 337 ~ii~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~l~~rG~v 377 (786)
.+....++.-.+. ++.+.++++++|.+++.+|..+++-...
T Consensus 92 ~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 92 SLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 4444444433333 4555667899999999999887766543
No 78
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.46 E-value=0.21 Score=53.40 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=83.7
Q ss_pred HHHHHhCchhHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HHHHHHHHHHHHHHHHH
Q 040629 271 FVTEVTGTFSIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NWFLAGFVIILTCFCKI 347 (786)
Q Consensus 271 ~~a~~~g~~~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~ 347 (786)
...+..|.++.+=|.+.|+++.. ++.+.+...-++.-. ..++.+=.++.|++++++.+. .+. .+.+.+..+..-+
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~-k~LLr~gIvLlG~~ltl~~i~~~G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSS-KKLLRLGIVLLGFRLTLSDIADVGGS-GVLIIAITLSSTF 107 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhH-HHHHHHHHHHHcceeeHHHHHHcCcc-HHHHHHHHHHHHH
Confidence 34445667788999999999997 555555544444443 677788888999999999987 333 3445555566677
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhcccc
Q 040629 348 LGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWD 387 (786)
Q Consensus 348 i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~ 387 (786)
+.++..++++|++++.++.+|..-+.=|.-.++...-..+
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 7788888899999999999999877778766666554433
No 79
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.54 Score=52.75 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C----chhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HH
Q 040629 259 LCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R----DLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NW 332 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~----~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~ 332 (786)
+..++..+...+++.+.+|+++++|=.++|+++.. . ...++..+-+..++ .-++...+|+.+|+..+. ..
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHHhc
Confidence 45556666667799999999999999999999986 2 22344444455554 445566889999999988 32
Q ss_pred HH-HHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHH
Q 040629 333 FL-AGFVIILTCFCKILGT--LLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMV 400 (786)
Q Consensus 333 ~~-~~~ii~~~~~~K~i~~--~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lv 400 (786)
.. ........+..=++.. +... +++.++.+++.+|..+..-.. -+.+.+..|.|...++.-..++
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 87 RSVGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHH
Confidence 22 3333333333332333 2223 589999999999987665432 2444555666666655554443
No 80
>PRK03818 putative transporter; Validated
Probab=95.17 E-value=0.26 Score=57.67 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccC
Q 040629 32 IVQLAFIITITRSLYFI-LRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMD 110 (786)
Q Consensus 32 l~~i~lil~~~~~~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d 110 (786)
++-+++.+.++.+++.+ ++.+++- +.|-+++|+++|-..-.. ..-. .......+.++|+.+|+|.+|++.-
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~----~~~~---~~~~~~~~~~~gl~lFv~~vGl~~G 79 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQF----GLTL---DSDMLHFIQEFGLILFVYTIGIQVG 79 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccccc----Cccc---ChHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455556666666653 2334444 488999999999522100 0001 2345677899999999999999999
Q ss_pred hhHH---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH-HHhhccHHHHHHHHH
Q 040629 111 VNSI---KSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL-TLTVTGFPAVTWILG 176 (786)
Q Consensus 111 ~~~l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 176 (786)
++-+ |+.+.+...+++...+++.++++.+.+++. .+ .....|+ +=+.|++|.+.....
T Consensus 80 p~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 80 PGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFG-----IP---LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC---HHHHHHHhhccccccHHHHHHHH
Confidence 8766 455666666777766777777665543332 22 3344443 336777777766554
No 81
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.14 E-value=0.23 Score=49.52 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=82.5
Q ss_pred HHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccCh-----hHHHhcchhhHHHHHHHHHHH
Q 040629 58 VTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDV-----NSIKSSSKRELNIAAAGALIP 132 (786)
Q Consensus 58 v~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~ip 132 (786)
++.+++|+++|-.... + ....+...+..+.+++|.+|+++-- +.+++.+++++.+.+..++-+
T Consensus 2 l~~li~Gi~lG~~~~~-----------~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS 69 (191)
T PF03956_consen 2 LIALILGILLGYFLRP-----------P-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS 69 (191)
T ss_pred eeeHHHHHHHHHHhcc-----------c-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4457788888864211 1 2223677888999999999998854 356778889999999888888
Q ss_pred HHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 133 MGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVL 208 (786)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~ 208 (786)
++.+.+.+.++.. ++. .++.+++-+ -=+.....++.|++ +.+.|.++.-+=++-+++++++.-+..
T Consensus 70 llgg~l~~~ll~~-----~~~-~~lav~sG~--GwYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 70 LLGGLLASLLLGL-----SLK-ESLAVASGF--GWYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHhcC-----CHH-HHHHHHccC--cHHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766632 111 333333322 11111222334433 668888888777777777776665544
No 82
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.13 E-value=2.1 Score=46.44 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 99 DLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTA 144 (786)
Q Consensus 99 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 144 (786)
..++|..|-.+|++...+..||...+.+.-+.+..+++..+..++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3688999999999998888888877777777777777776665554
No 83
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.03 E-value=0.61 Score=55.88 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred HHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhhhhhhH
Q 040629 308 VSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS--YHMPLQDRLALGVLMNTKGIL 377 (786)
Q Consensus 308 ~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~--~~~~~~~~~~lgl~l~~rG~v 377 (786)
.+.+.+++-.+..|++++...+. .|..+..+++.+...-++++.+.+++ .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 44778888888999999999988 77766655555555556666666554 499999999999999987754
No 84
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.01 E-value=0.98 Score=44.17 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHH-H-cccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHH
Q 040629 37 FIITITRSLYFI-L-RPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSI 114 (786)
Q Consensus 37 lil~~~~~~~~l-~-~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 114 (786)
+.+.+..+++.+ . +++++-...|-+++|+++|-..-..+. + -.....+.+.++|+.+|++.+|++--++-+
T Consensus 4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~-----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~ 76 (169)
T PF06826_consen 4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPI-----F--LPISAPSFLRQLGLALFLAAVGLSAGPGFF 76 (169)
T ss_pred HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCC-----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554 3 667777788999999999963211111 1 134567789999999999999999887655
Q ss_pred ---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH-HHhhccHHHHHHHHHh
Q 040629 115 ---KSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL-TLTVTGFPAVTWILGE 177 (786)
Q Consensus 115 ---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 177 (786)
|+.+.+...+++.-.++|.+++..+++++.+ .+ .....|. +=+.|++|.+....+.
T Consensus 77 ~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~----l~---~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 77 SSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFK----LN---PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC----CC---HHHHHHHHHccccCcHHHHHHHHh
Confidence 5666777777777777888888777764432 22 3344443 3367787877766544
No 85
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.91 E-value=1.2 Score=44.49 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCchHHHHHHHHHhhccH-HHHHH
Q 040629 96 MALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTA-RLLHLPTDPSGCLFWGLTLTVTGF-PAVTW 173 (786)
Q Consensus 96 igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~-~~~~~~~~~~~~l~lg~~ls~Ts~-~vv~~ 173 (786)
+.+.+.||..|++++++++++..|+...+. .+.+..+++.=.+++.+. ..+ +.+ .....|..+...++ +..+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~-~~~---~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLL-PLS---PALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHT-T-----HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCC---HHHHHHHHHHhcCCcHHHHH
Confidence 467889999999999999998876654332 233333443333333333 111 112 23334433322221 22333
Q ss_pred HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 174 ILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIR 211 (786)
Q Consensus 174 iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~ 211 (786)
....+. +.+. .++.+...++.+.+.++.-+...+.
T Consensus 77 ~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 77 VFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 333332 3332 3556666777777777665555444
No 86
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.50 E-value=0.9 Score=55.93 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=28.4
Q ss_pred CcceEEEEecccCcChHHHHHHHHHH--hcCCCeEEEEEEee
Q 040629 605 GRMQHVVMVFIGGPDDREALALAWRM--SANPSVQLTVLRLH 644 (786)
Q Consensus 605 ~~~~~I~v~f~Gg~ddreAL~~A~rm--a~~~~~~ltvv~~~ 644 (786)
.+..||++++-+-.|-...+.++.-. .++....+.++|++
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLv 497 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLV 497 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEE
Confidence 45679999988655556667776554 34455788999998
No 87
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.06 E-value=2.3 Score=46.36 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHH-----hCchhHHHHHHHhHhcCC-C--chhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HH
Q 040629 263 LIGVVICSFVTEV-----TGTFSIVGAFVFGIIMPD-R--DLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NW 332 (786)
Q Consensus 263 l~~~l~~~~~a~~-----~g~~~~lgafvaGl~~~~-~--~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~ 332 (786)
+.+.+.+.++++. .++++.+=|.+.|+++.| . +..+....-++ +....++-+=.++.|.++++..+. .+
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G~ 89 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVGP 89 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhhH
Confidence 3444444455443 477888889999999988 2 22233222222 334566777788899999999887 33
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhcccc
Q 040629 333 FLAGFVIILTCFCKIL-GTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWD 387 (786)
Q Consensus 333 ~~~~~ii~~~~~~K~i-~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~ 387 (786)
.. +.+.+.....-+. +.++..+.+|++++.+..++...+-=|.-.++...-..+
T Consensus 90 ~~-l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~ 144 (335)
T TIGR00698 90 NE-IVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK 144 (335)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC
Confidence 33 3333333333444 455555899999999999999877778776666554443
No 88
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.03 E-value=0.68 Score=53.99 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhH--HHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHH
Q 040629 261 FFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGA--LLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGF 337 (786)
Q Consensus 261 ~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~--~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ 337 (786)
..++.+.+...+++.+++++.++-.++|+++...+... .+.. + ....+++|......|+++|...+. ++..+..
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555567777888888888888888887421111 1111 1 223578899999999999999988 6655544
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHhhhhhhHHH
Q 040629 338 VIILTCFCKILG-TLLVSHSYHMPLQDRLALGVLMNTKGILAV 379 (786)
Q Consensus 338 ii~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l 379 (786)
+.+...+.-.+. ++...++.++||..++.+|.++++...+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 444444333333 344444679999999999999998876654
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.60 E-value=0.44 Score=55.92 Aligned_cols=92 Identities=20% Similarity=0.171 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhH
Q 040629 35 LAFIITITRSLYFI-LRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNS 113 (786)
Q Consensus 35 i~lil~~~~~~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~ 113 (786)
+++++.++++++.+ .+++++-.+.+-+++|+++|-..... | +.+.++|+++|+|.+|++.-++-
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i--------~-------~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI--------D-------PGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC--------C-------hHHHHHHHHHHHHHhhhccCHHH
Confidence 44445555555554 45577887899999999999643211 1 23677999999999999999987
Q ss_pred HHhcch---hhHHHHHHHHHHHHHHHHHHHH
Q 040629 114 IKSSSK---RELNIAAAGALIPMGVGAGLFF 141 (786)
Q Consensus 114 l~~~~~---~~~~ia~~~~~ip~~~~~~~~~ 141 (786)
++.-+| +-..+++...++.++++.++++
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~ 110 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAK 110 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754444 4444444433333444443333
No 90
>PRK10490 sensor protein KdpD; Provisional
Probab=93.51 E-value=0.4 Score=59.74 Aligned_cols=123 Identities=12% Similarity=0.155 Sum_probs=78.6
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 684 (786)
...||+|...|+|+++.++..|+|||+..++++++++|. ++... .+ +.+++.-.+.+ ++.++..+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~---~~---------~~~~~~l~~~~-~lA~~lGa- 314 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR---LP---------EKKRRAILSAL-RLAQELGA- 314 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc---CC---------HHHHHHHHHHH-HHHHHcCC-
Confidence 457899999999999999999999999999999999997 32110 00 11221122222 24444432
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
.+....-+|.++++ ++.+++.+.+.+|+|++++. .| + --|.+-|-|....- +.-|.||
T Consensus 315 ---~~~~~~~~dva~~i--~~~A~~~~vt~IViG~s~~~--------~~--~-~~~s~~~~l~r~~~-~idi~iv 372 (895)
T PRK10490 315 ---ETATLSDPAEEKAV--LRYAREHNLGKIIIGRRASR--------RW--W-RRESFADRLARLGP-DLDLVIV 372 (895)
T ss_pred ---EEEEEeCCCHHHHH--HHHHHHhCCCEEEECCCCCC--------CC--c-cCCCHHHHHHHhCC-CCCEEEE
Confidence 23343445666655 45445678999999998542 24 1 13577776665432 4567777
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.49 E-value=0.32 Score=57.53 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=83.9
Q ss_pred CCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHH
Q 040629 438 GAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEA 517 (786)
Q Consensus 438 ~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 517 (786)
...-|||||++.+...+.+++-+..++.. .....+++|+........+ +...+++...++-
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~~~~~~~~-----------------~~~~~~l~~~~~L 306 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVETPELHRLS-----------------EKEARRLHENLRL 306 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEecccccccc-----------------HHHHHHHHHHHHH
Confidence 45579999999999999999988888866 4566899998743211111 1123444444443
Q ss_pred hHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCC-CceEEE
Q 040629 518 FENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAP-CSVGIF 594 (786)
Q Consensus 518 ~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~Ap-CsVgIl 594 (786)
-++. +- +..+..+ .++.+.|.++|++.++.-||+|-+++.+..- ...+++.+++++++| .+|-|+
T Consensus 307 ae~l--Ga--e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~------~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 307 AEEL--GA--EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRR------LFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HHHh--CC--eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHH------HhcccHHHHHHhcCCCceEEEe
Confidence 3333 22 3344444 6899999999999999999999886533211 123778899999988 555443
No 92
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=93.36 E-value=14 Score=40.13 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----H
Q 040629 259 LCFFLIGVVICSFVTEVTGT--FSIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----N 331 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~--~~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~ 331 (786)
+...+...++.+++.+.+++ ..++|+++.+.++.- ......+-+.+. .+..-+.=..+|.+++...+. .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHH
Confidence 44555566777888888776 468888888777664 211111112122 222333456789999877665 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHH
Q 040629 332 WFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVA 411 (786)
Q Consensus 332 ~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~ 411 (786)
+...+...+..+..-.+..++.+++.++++.+++. .+.|-|.-|+.+.....+.+.---..+.++=+. ......|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~--~v~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVRLL--FVLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHHHH--HHHHHHH
Confidence 44455666666777888888999999999977643 458888888888776665442222222222111 2223455
Q ss_pred HHHHhhcc
Q 040629 412 PIISTMYR 419 (786)
Q Consensus 412 plv~~l~~ 419 (786)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 66666543
No 93
>PRK04972 putative transporter; Provisional
Probab=93.33 E-value=0.54 Score=55.09 Aligned_cols=119 Identities=20% Similarity=0.191 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhH
Q 040629 35 LAFIITITRSLYFI-LRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNS 113 (786)
Q Consensus 35 i~lil~~~~~~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~ 113 (786)
+++.+.++++++.+ ++++++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-++-
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~--------~~-------~~~~~~gl~lF~~~vG~~~Gp~F 81 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS--------IN-------TDALNLGFMLFIFCVGVEAGPNF 81 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC--------CC-------hHHHHHHHHHHHHHHhhhhhHHH
Confidence 44555555566554 4567788888999999999964221 11 22457999999999999999876
Q ss_pred H---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH-HHhhccHHHHHHHHH
Q 040629 114 I---KSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL-TLTVTGFPAVTWILG 176 (786)
Q Consensus 114 l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 176 (786)
+ |+.+.+...+++...+++++++..+++++. .+ .....|+ +=+.|++|.+.....
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 82 FSIFFRDGKNYLMLALVMVGSALVIALGLGKLFG-----WD---IGLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC---HHHHHHHhhccccCcHHHHHHHH
Confidence 6 455566666676666666666666554432 23 2333332 336677776666544
No 94
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.27 E-value=7.2 Score=42.48 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=78.3
Q ss_pred CchhHHHHHHHhHhcCC-CchhHHHHHHHHH---HHHHhhHHHHHHHhhhh-cccchhh-HH-HHHHHHHHHHHHHHHHH
Q 040629 277 GTFSIVGAFVFGIIMPD-RDLGALLFERFAD---FVSGIMLPLFFAMCGIR-TNVHKVH-NW-FLAGFVIILTCFCKILG 349 (786)
Q Consensus 277 g~~~~lgafvaGl~~~~-~~~~~~l~~~l~~---~~~~l~~PlfF~~~G~~-~d~~~l~-~~-~~~~~ii~~~~~~K~i~ 349 (786)
++|+..-+.++|.++.. .-..+++.++... +...-+.+..++-+|+. +|+..+. .+ +-.+++++...++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 67888888888988887 4444455554443 33344444445555765 7887776 33 34566677777888999
Q ss_pred HHHHHHhcCCChHH-HHHHHHHhhhhh-hHHHHHhhccccCCCCCh
Q 040629 350 TLLVSHSYHMPLQD-RLALGVLMNTKG-ILAVVVLNLGWDKKVLHD 393 (786)
Q Consensus 350 ~~l~~~~~~~~~~~-~~~lgl~l~~rG-~v~l~~~~~~~~~~~i~~ 393 (786)
+++.+++.|+-+-| ++.-|+.++.+| .=++++...+...+++.-
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmpf 328 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPF 328 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccH
Confidence 99999999975555 555577888774 456777777766666653
No 95
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=93.13 E-value=0.25 Score=42.22 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchH-HHHHHHhccCCCceE
Q 040629 538 TMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFR-EVNKNILANAPCSVG 592 (786)
Q Consensus 538 ~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~-~vn~~Vl~~ApCsVg 592 (786)
.+++.+.+.|++.++|.|++|.|.....+. ...+ +...++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~------~~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGR------RLGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhh------ccCchhhhhhcccccCCcee
Confidence 688999999999999999999996543322 2233 566789999999963
No 96
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.97 E-value=32 Score=43.18 Aligned_cols=106 Identities=4% Similarity=0.003 Sum_probs=66.9
Q ss_pred CCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHH
Q 040629 438 GAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEA 517 (786)
Q Consensus 438 ~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 517 (786)
+-.-++|+.+.+|++.+.+++++..+.+. .. -..+.|+++-+.+... ++.++..+..+.
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~~--~g-l~i~~~v~~~~~~~~~------------------~~~~~~~~~~~~ 631 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTKG--KG-LMICGSVIQGPRLECV------------------KEAQAAEAKIQT 631 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhccC--Cc-EEEEEEEecCchhhhH------------------HHHHHHHHHHHH
Confidence 34468999999999999999999999844 23 4556688864321100 001222222333
Q ss_pred hHhcCCceEEEEeEEecCCCChHHHHHHHHhh-----cCccEEEEccccCCCCCC
Q 040629 518 FENRSTGISVHPLTAMSPFITMHEDVCNLAED-----KHIAFMILPFHNQAGNSN 567 (786)
Q Consensus 518 ~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e-----~~adlIIlp~h~~~~~~G 567 (786)
+-++ .+++.-..+.++ .++.+.+-.+.+- -+.+.++|||...|+.+.
T Consensus 632 ~~~~-~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 632 WLEK-NKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHH-hCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 3322 344333333444 5889999888876 467999999999887544
No 97
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.51 E-value=18 Score=39.10 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=70.4
Q ss_pred HcccCCChhHHHHHHHHhhCccCCCc-cccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH
Q 040629 49 LRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAA 127 (786)
Q Consensus 49 ~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 127 (786)
....++|..+--|+.||++|.. ... +.... .-.-.-+.+-++|.++ .|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l-~~~~~~~~~-----GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL-PQIPAQTSA-----GITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc-ccchhhhcc-----chhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHH
Confidence 3447799999999999999942 222 11111 1122344555667664 59999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHH
Q 040629 128 GALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVT 172 (786)
Q Consensus 128 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~ 172 (786)
.+..++++++.++.++ +.++. .++++|+-.|+.....++
T Consensus 102 ~l~~t~~~~~~lg~~l-----gld~~-~a~Lia~GssICGasAia 140 (334)
T COG2855 102 TLSSTFLFAYFLGKLL-----GLDKK-LALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHHHHHHHHHHHHh-----CCCHH-HHHHHHccchhhHHHHHH
Confidence 7777777776666544 33444 667777666555433333
No 98
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=92.16 E-value=0.95 Score=48.18 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=73.8
Q ss_pred HHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhcc
Q 040629 307 FVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLG 385 (786)
Q Consensus 307 ~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~ 385 (786)
+.++++=|+.|.-+|..+|++.+. +... +++-..+=+ -...+++.+...|++.+|+-.+|.+-+.-|-.++.+.+..
T Consensus 66 i~~~l~P~LIF~GIGAmtDFgpllanP~~-~llGaaAQ~-Gif~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 66 ISNGLFPPLIFMGIGAMTDFGPLLANPKT-LLLGAAAQF-GIFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred hhcchhhHHHHHHHhHHHhhHHHHhCHHH-HHHHHHHHH-hHHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 346888899999999999999887 3332 122222222 2345666677779999999999999888898888877654
Q ss_pred cc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 386 WD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 386 ~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
.. .+.+.-..|+-| + +.-.+.||+++.+-.+++|
T Consensus 144 Ap~LlgpIaVaAYsYM---a-LvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYM---A-LVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred hHHHHHHHHHHHHHHH---H-HHhhhhhHHHHHhcCHHHH
Confidence 32 122322333333 3 3457788999987755544
No 99
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.08 E-value=4.8 Score=38.88 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCch--hHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----HHHHH
Q 040629 263 LIGVVICSFVTEVTGTF--SIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----NWFLA 335 (786)
Q Consensus 263 l~~~l~~~~~a~~~g~~--~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~~~~~ 335 (786)
+......+++.+.+|+. .++|+++++.++.- ....-++-+.+. .+-.-+.=..+|.+++...+. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555566677888875 78899988887765 222212222222 222334456789999977776 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccc
Q 040629 336 GFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGW 386 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~ 386 (786)
+...+..++.-++..++..+..++++.+++ ++ ..|-|.-++.....-.
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 666677777788889999999999998885 34 4777777777665433
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.69 E-value=11 Score=36.25 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcccCCC--hhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHH
Q 040629 37 FIITITRSLYFILRPLRQP--RLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSI 114 (786)
Q Consensus 37 lil~~~~~~~~l~~rl~~P--~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 114 (786)
+.+.++.+.+.+++++|+| ..+|-++++.++.-. +. . ....-..+.+++.+++-..+|.+++.+.+
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~---~-------~~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GG---L-------EITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CC---c-------cCCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 3456777888899999998 667777777666522 21 0 01112345566777777889999999998
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040629 115 KSSSKRELNIAAAGALIPMGVGAGLFFLTARLL 147 (786)
Q Consensus 115 ~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~ 147 (786)
++..+-.. .++...+..+.++...++++.+..
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665433 444555666667777777776644
No 101
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.22 E-value=17 Score=37.08 Aligned_cols=111 Identities=8% Similarity=0.153 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 040629 296 LGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTK 374 (786)
Q Consensus 296 ~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~r 374 (786)
.++.+..-+++-+-.+..|+| =++..+. +|..++.-++++.+.-++..++.++++|.+.. +. ..+.||
T Consensus 60 g~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl~Pk 128 (230)
T COG1346 60 GGQWINFLLGPATVALAVPLY-------KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSLLPK 128 (230)
T ss_pred ccHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHhccc
Confidence 455666677777667888887 3556666 88888888888888999999999999998764 22 346899
Q ss_pred hhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 375 GILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 375 G~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
....-+...+..+.|-+.+-+-..++++.++...+.+++.+++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888889999998887766666677777666666666664
No 102
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=90.92 E-value=17 Score=37.35 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhh
Q 040629 297 GALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKG 375 (786)
Q Consensus 297 ~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG 375 (786)
++.+..-+.+-+-.+-.|+| -+...+. +|..++.-++++.+.-+.++++.++++|.+.. +-..+.||.
T Consensus 64 ~~~l~~lLgPAtVALAvPLY-------~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKS 132 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLY-------KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQA 132 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHh
Confidence 44555566666667778877 3555566 77777777788888889999999999988763 234468999
Q ss_pred hHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 376 ILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 376 ~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
...=+...+..+.|-+..-.-..++++.++-..+.+++++++
T Consensus 133 VTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 133 ATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988888888888888776666666666666666666666653
No 103
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.81 E-value=3.4 Score=39.79 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHH---hcc-hhhHHHHHHH
Q 040629 53 RQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIK---SSS-KRELNIAAAG 128 (786)
Q Consensus 53 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~---~~~-~~~~~ia~~~ 128 (786)
++-...+-+++|+++|-..--.|.... .| ......+.++|+.+|++.+|++--.+-+. +.+ .....++...
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~--~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWY--IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCccee--cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 344477899999999964211121111 22 23567788999999999999999887664 333 1233344444
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHH-HhhccHHHHHHHHHhc
Q 040629 129 ALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLT-LTVTGFPAVTWILGEL 178 (786)
Q Consensus 129 ~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el 178 (786)
.++|.+++..+..++. ..+ .....|.. =+.|++|.+....+..
T Consensus 95 ~~~~~~~~~~~~~~~~----~~~---~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLL----RIN---YALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHh----CCC---HHHHHHHHhccccChHHHHHHHHHh
Confidence 4455555554444333 222 34444543 4788888887765544
No 104
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.63 E-value=3.6 Score=44.51 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=74.2
Q ss_pred HHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhc
Q 040629 306 DFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNL 384 (786)
Q Consensus 306 ~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~ 384 (786)
.+.++++=|+.|.-+|..+|++.+. +....++.-..+=++ ...+++.+...|++.+|+-.+|.+-+.-|-.++.+.+.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~k 179 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLI 179 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHh
Confidence 4566889999999999999999887 433222211222222 23345566677999999999999988889888877765
Q ss_pred ccc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 385 GWD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 385 ~~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
... .+.+.-..|+-| + +.-.+.||+++.+-.+++|
T Consensus 180 LAp~Llg~IaVAAYsYM---a-LVPiiqPpimklLttkkER 216 (399)
T TIGR03136 180 LAKDLFVPISIIAYLYL---S-LTYAGYPYLIKLLVPKKYR 216 (399)
T ss_pred hhhHhHHHHHHHHHHHH---H-HHhcccchHHHhhcCHHHH
Confidence 332 122333333333 3 3457789999987755544
No 105
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=90.44 E-value=3.2 Score=48.80 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=76.5
Q ss_pred ccCCChhHHHHHHHHhhCccCCCc--cccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHH---HhcchhhHHHH
Q 040629 51 PLRQPRLVTDILGGLLLGPSFFGR--KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSI---KSSSKRELNIA 125 (786)
Q Consensus 51 rl~~P~iv~~ilaGiilGP~~lg~--~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia 125 (786)
++.+-...|-+++|+++|-. +. |.+. -.| ......+.++|+.+|++.+|+.--++-+ ++.+.+...++
T Consensus 412 p~~lg~~~g~l~~gl~~g~~--~~~~~~~~--~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGWL--RSKHPTFG--NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred ceeehhhHHHHHHHHHHHHh--cccCCcce--ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 44455677899999999863 32 2111 122 3456678999999999999999887655 56666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH-HHhhccHHHHHHHHHhc
Q 040629 126 AAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL-TLTVTGFPAVTWILGEL 178 (786)
Q Consensus 126 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 178 (786)
++-.++|.+++..+++++.+ .+ ....+|+ +=+.|++|.+.......
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~----~~---~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVLK----YD---PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CC---HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 77777787777777754442 12 3455553 45788888887765443
No 106
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=89.81 E-value=1.2 Score=46.70 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=63.5
Q ss_pred EecccCcChHHHHHHHHHHhcCCC-eEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEEE
Q 040629 612 MVFIGGPDDREALALAWRMSANPS-VQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYY 690 (786)
Q Consensus 612 v~f~Gg~ddreAL~~A~rma~~~~-~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~ 690 (786)
+++.=.|.|+-|++.|.|+.++.+ .++|++.+=+.. ..+++.+++-... +-++....
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~--------------------a~~~~~lr~aLAm--GaD~avli 87 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKA--------------------LTNAKGRKDVLSR--GPDELIVV 87 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc--------------------hhhHHHHHHHHHc--CCCEEEEE
Confidence 344557999999999999999764 899999993111 1122344443332 22222222
Q ss_pred E-E--EeCChHHHHHHHHHh-hhcCccEEEEccC--CCCcccc-cccCCcCCCCccccchhh
Q 040629 691 E-K--VVNNREETTGALREM-ELQKVGLYIVGRE--VMASAAT-ADLLGWSECPEIGAIGDL 745 (786)
Q Consensus 691 e-~--~v~~~~e~~~~i~~~-~~~~~DLiiVGr~--~~~~~~~-~gl~~w~e~peLG~igd~ 745 (786)
+ . .-.|...|..++... +..+|||++-|++ +..+.++ .-+.+|-..|-+..+-++
T Consensus 88 ~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 88 IDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred ecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 1 1 112455566666544 3446999999997 3322222 223345555666665554
No 107
>COG2985 Predicted permease [General function prediction only]
Probab=89.78 E-value=2.4 Score=47.37 Aligned_cols=79 Identities=23% Similarity=0.187 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhccChhHH---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-HHHhhccHHH
Q 040629 95 YMALDLYIFLIGLEMDVNSI---KSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWG-LTLTVTGFPA 170 (786)
Q Consensus 95 ~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg-~~ls~Ts~~v 170 (786)
++|+++|.+.+|+|--+..+ |+.+++-..+++.- ++.+..+++++++.+ +++ ..+..| .+=+.||+|.
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~---~~~-~~~~~Gm~sGAlTsTP~ 133 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF---GID-LGLIAGMFSGALTSTPG 133 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc---CCC-HHHhhhhhcccccCCch
Confidence 89999999999999988654 67777776666543 445555666666654 333 223333 2224555555
Q ss_pred H---HHHHHhcCcc
Q 040629 171 V---TWILGELKLL 181 (786)
Q Consensus 171 v---~~iL~el~ll 181 (786)
. ..+++|++..
T Consensus 134 L~aa~~~L~~lg~~ 147 (544)
T COG2985 134 LGAAQDILRELGAP 147 (544)
T ss_pred hHHHHHHHHhhccc
Confidence 4 4577777763
No 108
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.89 E-value=5.6 Score=44.16 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=64.2
Q ss_pred HhhHHHHHHHhhhhcccchhh-HH---HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-H-hhhhhhHHHHHhh
Q 040629 310 GIMLPLFFAMCGIRTNVHKVH-NW---FLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGV-L-MNTKGILAVVVLN 383 (786)
Q Consensus 310 ~l~~PlfF~~~G~~~d~~~l~-~~---~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl-~-l~~rG~v~l~~~~ 383 (786)
++++-.||+.+|+..++..+. .+ .....+.........+.....+.+++.++.-.+..|- . .+-.| .+.++..
T Consensus 67 ~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhG-TAaa~g~ 145 (368)
T PF03616_consen 67 DFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHG-TAAAFGP 145 (368)
T ss_pred HHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCcc-HHHHHHH
Confidence 567778999999999988776 22 2222333333455666666667778888776654432 1 12222 2334444
Q ss_pred ccccC-CCCChhhHHHH--HHHHHHHHHhHHHHHHhhccchh
Q 040629 384 LGWDK-KVLHDQEYAVM--VIAIVIMTGGVAPIISTMYRSST 422 (786)
Q Consensus 384 ~~~~~-~~i~~~~~~~l--vl~~vv~t~i~~plv~~l~~~~~ 422 (786)
...+. |.-+.....+. .+..+.-.++-.|+.+|+.|+.+
T Consensus 146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555 65544333222 23344445667799998776544
No 109
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.58 E-value=15 Score=41.05 Aligned_cols=167 Identities=10% Similarity=0.030 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccC
Q 040629 33 VQLAFIITITRSLYFILRP--LRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMD 110 (786)
Q Consensus 33 ~~i~lil~~~~~~~~l~~r--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d 110 (786)
..+.+.+.+++.+...++. +.+|..+..+++|+++.... .+ .+. . .-.++.++.++++.+-+++..+=..++
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~---~~~-~-~~~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SF---KKF-P-WVAERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HH---hCc-c-ccchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455555566677776764 77999999999999998642 11 000 0 012458999999999999988888999
Q ss_pred hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCchHHHHHHHHHhhccHHHH--HHHHHhcCccCChhHH
Q 040629 111 VNSIKSSSKRELNIAAAGALIPMGVGAGLFFL-TARLLHLPTDPSGCLFWGLTLTVTGFPAV--TWILGELKLLQTDIGR 187 (786)
Q Consensus 111 ~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~-l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv--~~iL~el~ll~s~~g~ 187 (786)
+..+....-+.+.+.+.+.+...+....+.+- +.+.+ +... ..+-.+|..+-.|+.++. ..+-++.+-.+.-+=-
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~y-daaV-~~ag~~G~~lGatptaianm~av~~~yg~s~~af~i 373 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDY-DAAV-LCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIV 373 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchH-HHHH-HhcccccccccchHHHHHHHHHHHhccCCCCcceeh
Confidence 99999999999999888888776555433332 32221 0000 022345555555444332 2333444543333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040629 188 LATSIAMISDVCSWILVAVV 207 (786)
Q Consensus 188 l~ls~a~i~D~~~~~ll~~~ 207 (786)
.=+-.+.+-|+...+++...
T Consensus 374 vPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 374 VPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred hhhHHHHHHHHhhHHHHHHH
Confidence 33456778888777666554
No 110
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.24 E-value=11 Score=40.93 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=79.9
Q ss_pred cCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHH-
Q 040629 52 LRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGAL- 130 (786)
Q Consensus 52 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~- 130 (786)
++.|.+++.++ |+++...... .|..-.+.++.+++...-+-||..|..++.+..++..+......+.-.+
T Consensus 180 ~~nP~iia~i~-Gl~~~~~~i~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil 250 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLVGFK--------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLV 250 (321)
T ss_pred HhCCChHHHHH-HHHHHHHhhc--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHH
Confidence 57788887654 5666643222 3444577899999999999999999999998887776766666555553
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 040629 131 IPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAV 206 (786)
Q Consensus 131 ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~ 206 (786)
.|.+. +.++..+. .+ . ...-....++...+++...++.+.--.+. +.+.+...++-+++.+.+.+
T Consensus 251 ~P~i~-~~~~~~~~-----l~-~-~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp~ 315 (321)
T TIGR00946 251 QPAVM-AGISKLIG-----LR-G-LELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLPL 315 (321)
T ss_pred HHHHH-HHHHHHhC-----CC-h-HHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHH
Confidence 45443 43433332 11 1 23344445555555555665555322233 44444444555555544443
No 111
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=86.59 E-value=17 Score=41.37 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC---CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHH
Q 040629 259 LCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD---RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFL 334 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~---~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~ 334 (786)
..+++.+...++.+++.+..+.+.-..+.|++... ........-.-|.+. .+++|+-..-.|+++|...+. +|..
T Consensus 11 ~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~~~~~ 89 (429)
T COG0025 11 LLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRRVWRS 89 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHHhHHH
Confidence 34444555556666666666555555555554442 111111111112222 677888888999999999998 7766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629 335 AGFVIILTCFCKILGTLLVSHSY--HMPLQDRLALGVLMNTKGILAVVVL 382 (786)
Q Consensus 335 ~~~ii~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~l~~rG~v~l~~~ 382 (786)
+..+.....+...++.....++. ++|+..++.+|-++++-.-+.+.-.
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 66666666666666666666666 8999999999999988877665443
No 112
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=86.55 E-value=4.4 Score=40.17 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=32.7
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
||++.+.||.|+--++.++.+.++..+.+++++++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999988778889999985
No 113
>PRK10711 hypothetical protein; Provisional
Probab=86.44 E-value=32 Score=35.42 Aligned_cols=109 Identities=9% Similarity=0.137 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhh
Q 040629 298 ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGI 376 (786)
Q Consensus 298 ~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~ 376 (786)
+.+..-+.+-+-.+-.|+| =+...+. +|..++.-+.++.+.-++.+++.++.+|.+..- -..|.||..
T Consensus 60 ~~l~~lLgPAtVALAvPLY-------~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~----~~Sl~pkSV 128 (231)
T PRK10711 60 EVLNDLLQPAVVALAFPLY-------EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEI----AASILPKSV 128 (231)
T ss_pred HHHHhhhhHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhhhh
Confidence 4444455555556777776 3455555 777777777788888899999999999886532 234689998
Q ss_pred HHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 377 LAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 377 v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
..=+...+..+.|-+.+-.-..++++.++-..+.+++++++
T Consensus 129 TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 129 TTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888877765555555566666555566666653
No 114
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=86.21 E-value=43 Score=34.34 Aligned_cols=109 Identities=7% Similarity=0.114 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhh
Q 040629 298 ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGI 376 (786)
Q Consensus 298 ~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~ 376 (786)
+.+..-+++-+-.+-.|+| -+...+. +|..++.-+.++.+.-+..+++.++.+|.+. .... .+.+|..
T Consensus 59 ~~l~~lLgPAtVALAvPLY-------~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSv 127 (226)
T TIGR00659 59 GVINDLLGPAVVALAIPLY-------KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSV 127 (226)
T ss_pred HHHHHhhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHh
Confidence 3444455555556777776 2445555 6776666777777778888899999999874 3333 4689998
Q ss_pred HHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 377 LAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 377 v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
..-+...+..+.|-..+-.-..++++.++-..+.+++++++
T Consensus 128 TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 128 TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888877655555555566666555566666654
No 115
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.66 E-value=7 Score=41.83 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=55.1
Q ss_pred hHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHH
Q 040629 57 LVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVG 136 (786)
Q Consensus 57 iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~ 136 (786)
.+--++.|+++|+..-+. . +.++.=..+++.|+.|..|.++|++.+.+.+.+.+.+++..+.+++.++
T Consensus 169 lilpILiGmilGNld~~~---~---------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~ 236 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDM---R---------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN 236 (312)
T ss_pred HHHHHHHHHHHhccchhh---H---------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 556677888888732112 1 1111122237888999999999999999999999999998888888888
Q ss_pred HHHHHHH
Q 040629 137 AGLFFLT 143 (786)
Q Consensus 137 ~~~~~~l 143 (786)
..+..++
T Consensus 237 ~~i~rll 243 (312)
T PRK12460 237 IFADRLV 243 (312)
T ss_pred HHHHHHh
Confidence 8777655
No 116
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=84.50 E-value=10 Score=37.47 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=55.1
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceE
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVN 688 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~ 688 (786)
+|+|.+.||+|+--.|.+..++.++.+.+++++++...-. .+...+.+++.++.+++. +.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~----------------~~s~~~~~~v~~~~~~~~----i~ 60 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR----------------EESDEEAEFVEEICEQLG----IP 60 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS----------------CCHHHHHHHHHHHHHHTT-----E
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC----------------cccchhHHHHHHHHHhcC----Cc
Confidence 6899999999999999999999999999999999972211 123345677777777653 22
Q ss_pred EEEEEeC-------ChHHHHHHHH-----Hh-hhcCccEEEEccC
Q 040629 689 YYEKVVN-------NREETTGALR-----EM-ELQKVGLYIVGRE 720 (786)
Q Consensus 689 ~~e~~v~-------~~~e~~~~i~-----~~-~~~~~DLiiVGr~ 720 (786)
+.-+.++ +.++.....| +. .+.++|.++.|-+
T Consensus 61 ~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh 105 (182)
T PF01171_consen 61 LYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHH 105 (182)
T ss_dssp EEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---B
T ss_pred eEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCc
Confidence 2221222 2223333232 22 4566899999998
No 117
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=84.38 E-value=0.35 Score=53.92 Aligned_cols=111 Identities=18% Similarity=0.307 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchh--HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHH
Q 040629 264 IGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLG--ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVII 340 (786)
Q Consensus 264 ~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~--~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~ 340 (786)
+..+....+.+.++++.++|-.++|+++...... +.-.+.++.+. .+.+++.....|.++|...+. .+.......+
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~-~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~ 84 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLA-EIGLAFLLFEAGLELDIKELRRNWRRALALGL 84 (380)
T ss_dssp ------------------------------------------S-SSH-HHHS--SSHHHHTTGGGG--------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccc
Confidence 3344445578899999999999999999984333 11134455555 788888888999999999987 6655555555
Q ss_pred HHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHhhhhh
Q 040629 341 LTCFCKILG-TLLVSH---SYHMPLQDRLALGVLMNTKG 375 (786)
Q Consensus 341 ~~~~~K~i~-~~l~~~---~~~~~~~~~~~lgl~l~~rG 375 (786)
..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 85 VGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -----------------------------TTHHHHTT--
T ss_pred ceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 555555555 444443 47889999999998876544
No 118
>PRK04972 putative transporter; Provisional
Probab=84.28 E-value=13 Score=43.76 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHcc-----cCCChhHHHHHHHHhhCccCCCc--cccccccccCCchhHHHHHHHHHHHHHHHHHhh
Q 040629 35 LAFIITITRSLYFILRP-----LRQPRLVTDILGGLLLGPSFFGR--KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGL 107 (786)
Q Consensus 35 i~lil~~~~~~~~l~~r-----l~~P~iv~~ilaGiilGP~~lg~--~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gl 107 (786)
+++-++++.+++.+-=+ +++-.--|.+++|+++|- ++. |.+.. .| ......+.++|+.+|+..+|+
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~--~p---~~a~~~l~~~GL~lFla~vGl 458 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY--IP---QGALNMVKEFGLMVFMAGVGL 458 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee--eC---HHHHHHHHHHhHHHHHHHHHH
Confidence 34444555555554333 445556789999999985 333 22111 22 346678999999999999999
Q ss_pred ccChhHH---HhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-HHHhhccHHHHHHHHHhc
Q 040629 108 EMDVNSI---KSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWG-LTLTVTGFPAVTWILGEL 178 (786)
Q Consensus 108 e~d~~~l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 178 (786)
.--.+-+ ++.+.+...++.+..++|.+++..+++++.+. + ....+| ++=+.|++|.+.......
T Consensus 459 ~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~----~---~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 459 SAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM----N---RALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C---HHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 8876544 55567777788888888888888888666532 2 445555 445788888777765443
No 119
>PRK12342 hypothetical protein; Provisional
Probab=84.16 E-value=3.8 Score=42.90 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=26.6
Q ss_pred EecccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 040629 612 MVFIGGPDDREALALAWRMSANPSVQLTVLRL 643 (786)
Q Consensus 612 v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~ 643 (786)
+++.=+|.|+-|++.|.|+.+ .+.++|++.+
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~ 59 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTV 59 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEe
Confidence 445567999999999999995 5899999999
No 120
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=84.00 E-value=3.9 Score=39.67 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=47.9
Q ss_pred cChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEEEEEE-eC-
Q 040629 618 PDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKV-VN- 695 (786)
Q Consensus 618 ~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~-v~- 695 (786)
+.|+|+|+.|+++++..+.+++++-+=+.+ + .++.+.+...++ +-+++...+-- ..
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~--------------------~-~~~~l~~~l~~~-G~d~v~~~~~~~~~~ 72 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAE--------------------E-AAEALRKALAKY-GADKVYHIDDPALAE 72 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCC--------------------C-HHHHHHHHHHST-TESEEEEEE-GGGTT
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecch--------------------h-hHHHHhhhhhhc-CCcEEEEecCccccc
Confidence 788999999999999999999999773101 1 222223322211 11334333211 11
Q ss_pred -ChHHHHHHHHHh-hhcCccEEEEccC
Q 040629 696 -NREETTGALREM-ELQKVGLYIVGRE 720 (786)
Q Consensus 696 -~~~e~~~~i~~~-~~~~~DLiiVGr~ 720 (786)
+.+....++.+. ++.++|++++|.+
T Consensus 73 ~~~~~~a~~l~~~~~~~~~~lVl~~~t 99 (164)
T PF01012_consen 73 YDPEAYADALAELIKEEGPDLVLFGST 99 (164)
T ss_dssp C-HHHHHHHHHHHHHHHT-SEEEEESS
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 344566666655 4567999999997
No 121
>COG3329 Predicted permease [General function prediction only]
Probab=83.65 E-value=17 Score=38.35 Aligned_cols=122 Identities=9% Similarity=0.029 Sum_probs=77.5
Q ss_pred chhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 278 TFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS 356 (786)
Q Consensus 278 ~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~ 356 (786)
+++.+.-|+.|++.+--+-.-++-+.+-...+-.++--.=.--|+.+.-+.+. ....+..-+.+.++.-+++.++..++
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl 95 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL 95 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46788888888887751111111122211111111111112234444444444 34444556666777788888889999
Q ss_pred cCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHH
Q 040629 357 YHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVM 399 (786)
Q Consensus 357 ~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~l 399 (786)
.+++..|+...+-..+.-..+.++.+...++..-+..+.|...
T Consensus 96 ~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 96 PKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 9999999999999999999999999888888777777777554
No 122
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=83.02 E-value=14 Score=40.21 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCh--hHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccC
Q 040629 33 VQLAFIITITRSLYFILRPLRQPR--LVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMD 110 (786)
Q Consensus 33 ~~i~lil~~~~~~~~l~~rl~~P~--iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d 110 (786)
.++.+++.++...+++++|+|+|. ++|-++++.++.-..... .-.| +.+..++.+++=..+|.+++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~-----~~~P-------~~l~~~aqv~iG~~iG~~f~ 222 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS-----FSLP-------PWLVNAAQVLIGASIGSRFT 222 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC-----CCCC-------HHHHHHHHHHHHHHHHcccc
Confidence 345666677888999999999875 677777776665432111 0112 23444555566668899999
Q ss_pred hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040629 111 VNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLL 147 (786)
Q Consensus 111 ~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~ 147 (786)
...+++..| .+..++...+.-+.++.+.++.+....
T Consensus 223 ~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~~ 258 (318)
T PF05145_consen 223 RETLRELRR-LLPPALLSTLLLLALCALFAWLLSRLT 258 (318)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876554 444555555556666666666666543
No 123
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=82.26 E-value=23 Score=35.19 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc-cccccccccCCchhHHHHHHHHHHH-------HHHHHHh
Q 040629 35 LAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKLFPVRSVTTLETVAYMALD-------LYIFLIG 106 (786)
Q Consensus 35 i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~fp~~~~~~l~~l~~igl~-------~llF~~G 106 (786)
+.++..+++.+..-+.|=|++.----|+.|+++...+ |. .. -++....+..++-+|++ |-.-..+
T Consensus 21 vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIvaTA 93 (254)
T TIGR00808 21 VGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVATA 93 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHHHHh
Confidence 4445555555555444555666666777888876432 11 00 01223344445544443 2344678
Q ss_pred hccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040629 107 LEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARL 146 (786)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 146 (786)
.|.|.+++||.+..-..--+.+.++||+.+..+++.+...
T Consensus 94 f~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 94 FEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred hcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999887777889999999999999988753
No 124
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=81.90 E-value=11 Score=41.96 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=62.9
Q ss_pred HHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040629 281 IVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIR-TNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYH 358 (786)
Q Consensus 281 ~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~-~d~~~l~~~~~~~~ii~~~~~~K~i~~~l~~~~~~ 358 (786)
++...++|.+..+ .-+.++-.+.+..++..+++|.+....=.+ .+...+..++.+.+...+..+.-++..++..++++
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444556666666 566777888899999999999886555444 33443444444444444444444566666777777
Q ss_pred CChHHHH--HHHHHhhhhhhHHHHHhhcccc
Q 040629 359 MPLQDRL--ALGVLMNTKGILAVVVLNLGWD 387 (786)
Q Consensus 359 ~~~~~~~--~lgl~l~~rG~v~l~~~~~~~~ 387 (786)
.+.++.- .++...+.-|.+.+-+......
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g 119 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALFG 119 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence 7665543 3333344446666655554433
No 125
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=81.72 E-value=65 Score=32.86 Aligned_cols=109 Identities=11% Similarity=0.214 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhh
Q 040629 297 GALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKG 375 (786)
Q Consensus 297 ~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG 375 (786)
++.+..-+++-+-.+-.|+|= +...+. +|..++.-+..+.+.-+..+++.++.+|.+.. .. ..+.+|.
T Consensus 48 g~~l~~lLgPatVALAvPLY~-------~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~--~Sl~pkS 116 (215)
T PF04172_consen 48 GDILSFLLGPATVALAVPLYR-------QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--II--LSLAPKS 116 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHHHHH
Confidence 344444555555566667662 344555 77777777778888888889999999988653 33 3357999
Q ss_pred hHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHh
Q 040629 376 ILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIIST 416 (786)
Q Consensus 376 ~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~ 416 (786)
...-+...+..+.|-...-.-..++++-++-..+.++++++
T Consensus 117 VTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 117 VTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 88888888887777776555555556666655556666665
No 126
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=80.12 E-value=9.1 Score=40.87 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=70.2
Q ss_pred HHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHhhhhhhHH
Q 040629 306 DFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHM------PLQDRLALGVLMNTKGILA 378 (786)
Q Consensus 306 ~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~l~~rG~v~ 378 (786)
.+.++++=|+.|.-+|..+|++.+. +.. .+++-..+=++ ...+++.+...|+ +.+|+-.+|.+-+.-|-.+
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~-~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~ 136 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPR-TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChH-HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence 4466889999999999999998887 332 12222222222 2334455556677 7799999999888888888
Q ss_pred HHHhhcccc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 379 VVVLNLGWD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 379 l~~~~~~~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
+.+.+.... .+.+.-..|+-| + +.-.+.||+++.+-.+++|
T Consensus 137 If~s~~lap~Llg~IaVAAYsYM---a-LvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 137 IYLSGKLAPELLAAIAVAAYSYM---A-LVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHH---H-HHhcccchHHHhhcChHHh
Confidence 777664321 122222333332 3 3357788999887655444
No 127
>PRK03818 putative transporter; Validated
Probab=79.55 E-value=1.2e+02 Score=35.82 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 040629 281 IVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-----NWFLAGFVIILTCFCKILGTLLV 353 (786)
Q Consensus 281 ~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-----~~~~~~~ii~~~~~~K~i~~~l~ 353 (786)
.-|++++|+++.+ ++++..+.+....+..++.+-+|...+|++.-...+. .+...++-+++ ++.-.+.+++.
T Consensus 33 ~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~ 111 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAIL 111 (552)
T ss_pred cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 3688888998888 3344445555556666888999999999998866554 24433333333 33334446667
Q ss_pred HHhcCCChHH
Q 040629 354 SHSYHMPLQD 363 (786)
Q Consensus 354 ~~~~~~~~~~ 363 (786)
.+++|+++-.
T Consensus 112 ~~~~~~~~~~ 121 (552)
T PRK03818 112 HKLFGIPLPV 121 (552)
T ss_pred HHHhCCCHHH
Confidence 8888998653
No 128
>COG0679 Predicted permeases [General function prediction only]
Probab=79.03 E-value=1e+02 Score=33.40 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=83.5
Q ss_pred chhHHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHH
Q 040629 278 TFSIVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLV 353 (786)
Q Consensus 278 ~~~~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~ 353 (786)
.++.+=|+++|+++.. -+....+.+-++.+. +-..|+-.+..|+.++..... .+.........-.+..++..++.
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888874 334446666666666 889999999999999985454 34444444444677888889999
Q ss_pred HHhcCCChHHHHHHHHH-hhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHh
Q 040629 354 SHSYHMPLQDRLALGVL-MNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIIST 416 (786)
Q Consensus 354 ~~~~~~~~~~~~~lgl~-l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~ 416 (786)
.+.++++..+...+=+. ..|.+....+++.. .+.-.+..-+.+.++. +.+.++-|...+
T Consensus 246 ~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist-~ls~~t~p~~~~ 305 (311)
T COG0679 246 AKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLST-LLSLLTLPLLIL 305 (311)
T ss_pred HHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999887655322221 34555555555544 3333333444443444 444555555443
No 129
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=78.84 E-value=11 Score=39.73 Aligned_cols=126 Identities=10% Similarity=0.126 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC--Cch--hHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh---H
Q 040629 259 LCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD--RDL--GALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH---N 331 (786)
Q Consensus 259 ~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~--~~~--~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~---~ 331 (786)
....+..+|..+.+++.+++++..|=.++|.+... +.+ .+.+...+.+++ .-+....+|+++.+..+. .
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 45557778888999999999999999999999975 333 355665666665 233445788888877765 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCC
Q 040629 332 WFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLH 392 (786)
Q Consensus 332 ~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~ 392 (786)
|.. -..+.-..+. ..-.+..++..|+++...+..|+.++.-..+-+ .....+++.++
T Consensus 87 iAi-pgAl~qia~a-t~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl--lraLqEr~lid 143 (408)
T COG4651 87 IAI-PGALAQIALA-TLLGMGLSSLLGWSFGTGIVFGLALSVASTVVL--LRALEERQLID 143 (408)
T ss_pred Hhc-chHHHHHHHH-HHHHhHHHHHcCCCcccceeeeehhhhHHHHHH--HHHHHHhcccc
Confidence 221 0011001111 111233456678888888898988877665433 33333444444
No 130
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=78.44 E-value=7.1 Score=41.75 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=30.8
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.+.++.|.||+|+--.|.+|.+.-...+.++.++++.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 3567889999999999999999876546778888885
No 131
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=78.23 E-value=13 Score=36.59 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.1
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
+|++.+.||.|+--++.++.+...+.+.+++++++.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id 36 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVD 36 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 589999999999999999999887667788888885
No 132
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=78.15 E-value=6.2 Score=42.71 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred HHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhhhHHH
Q 040629 306 DFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS-----YHMPLQDRLALGVLMNTKGILAV 379 (786)
Q Consensus 306 ~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l 379 (786)
.+.++++=|+.|.-+|..+|++.+. +... +++-..+=++-+.....+..+ .|++.+|+-.+|.+-+.-|-.++
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15475 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 3456888899999999999998887 3321 122222222222222222222 37899999999998888888888
Q ss_pred HHhhcccc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 380 VVLNLGWD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 380 ~~~~~~~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
.+.+.... .|-+.-..|+-| + +.-.+.||+++.+-.+++|
T Consensus 209 fvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15475 209 YLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTETER 250 (433)
T ss_pred HhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 77764332 133333344333 3 3357788999887655444
No 133
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.82 E-value=6.4 Score=42.61 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=69.0
Q ss_pred HHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhhhHHH
Q 040629 306 DFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS-----YHMPLQDRLALGVLMNTKGILAV 379 (786)
Q Consensus 306 ~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l 379 (786)
.+.++++=|+.|.-+|..+|++.+. +... +++-..+=++-+.....+..+ .|++.+|+-.+|.+-+.-|-.++
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15477 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 3456888899999999999998887 3321 122222222222222222222 37899999999998888888888
Q ss_pred HHhhcccc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 380 VVLNLGWD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 380 ~~~~~~~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
.+.+.... .|-+.-..|+-| + +.-.+.||+.+.+-.+++|
T Consensus 209 fvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15477 209 YLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKER 250 (433)
T ss_pred HhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 77764332 133333344333 3 3357788999887655444
No 134
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.81 E-value=6.4 Score=42.61 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=69.1
Q ss_pred HHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhhhHHH
Q 040629 306 DFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS-----YHMPLQDRLALGVLMNTKGILAV 379 (786)
Q Consensus 306 ~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l 379 (786)
.+.++++=|+.|.-+|..+|++.+. +... +++-..+=++-+.....+..+ .|++.+|+-.+|.+-+.-|-.++
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~-~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15476 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRT-LLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHH-HHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 3456888899999999999998887 3321 122222222222222222222 37899999999998888888888
Q ss_pred HHhhcccc--CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhh
Q 040629 380 VVLNLGWD--KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTR 423 (786)
Q Consensus 380 ~~~~~~~~--~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~ 423 (786)
.+.+.... .|-+.-..|+-| + +.-.+.||+.+.+-.+++|
T Consensus 209 fvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER 250 (433)
T PRK15476 209 YLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKER 250 (433)
T ss_pred HhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHh
Confidence 77764332 133333344333 3 3357788999887655444
No 135
>PRK09903 putative transporter YfdV; Provisional
Probab=77.70 E-value=39 Score=36.55 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=63.2
Q ss_pred cCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHH-H
Q 040629 52 LRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGA-L 130 (786)
Q Consensus 52 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~-~ 130 (786)
++-|.+++.++ |+++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.-. +
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~ 240 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGV------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLIL 240 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHH
Confidence 44577777755 455543 233 1354557889999999999999999999877665433 34443333333 3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhc
Q 040629 131 IPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGEL 178 (786)
Q Consensus 131 ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 178 (786)
.|++. ..+...+ +.+ ....-....++...+++.+.++.+.
T Consensus 241 ~P~i~-~~~~~~~-----~l~--~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 241 MPLAL-LLVGMAC-----HLN--SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHH-HHHHHHc-----CCC--cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46544 3222222 111 1334455555666666666666554
No 136
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=77.46 E-value=5.3 Score=39.93 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhh
Q 040629 334 LAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLN 383 (786)
Q Consensus 334 ~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~ 383 (786)
..+.+.+...++-++++++.+++.++|++|++.++..++=-..-...+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 45677778889999999999999999999999998876655555555444
No 137
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.41 E-value=16 Score=40.18 Aligned_cols=113 Identities=12% Similarity=-0.027 Sum_probs=64.1
Q ss_pred HHhhHHHHHHHhhhhcccchhh-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhh-hHHHHHhh
Q 040629 309 SGIMLPLFFAMCGIRTNVHKVH-NWFL---AGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKG-ILAVVVLN 383 (786)
Q Consensus 309 ~~l~~PlfF~~~G~~~d~~~l~-~~~~---~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG-~v~l~~~~ 383 (786)
.+.|+-+||+.+|+.-++..+. .+.. ............-......+.+.+.++.-++..|-.--.-| ..+.+...
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~ 147 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGP 147 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHH
Confidence 4788999999999999998887 2221 12222222333444444556667777766655532211112 13445556
Q ss_pred ccccCCCCChhhHHH--HHHHHHHHHHhHHHHHHhhccch
Q 040629 384 LGWDKKVLHDQEYAV--MVIAIVIMTGGVAPIISTMYRSS 421 (786)
Q Consensus 384 ~~~~~~~i~~~~~~~--lvl~~vv~t~i~~plv~~l~~~~ 421 (786)
...+.|.-+.....+ -.+..+.-.++-+|+.+|+.++.
T Consensus 148 ~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 148 TFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 666776655432222 22334444555679999987554
No 138
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=76.43 E-value=13 Score=44.70 Aligned_cols=124 Identities=12% Similarity=0.183 Sum_probs=73.8
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCccccccccccccCcch-hhhHHHHHHHHHhhcCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNVKEEDIRYSKCIDGRQ-SQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~ 684 (786)
..||+|...|++....-+..|.|+|+..+++.|++++. ++... .. +.+ +++++ . -+..++..++
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~---~~---------~~~~~~l~~-~-~~Lae~lGae 313 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR---LS---------EKEARRLHE-N-LRLAEELGAE 313 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc---cc---------HHHHHHHHH-H-HHHHHHhCCe
Confidence 47999999999999999999999999999999999997 43321 00 111 12221 1 1233333322
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.+-..-.|-++.+ .+.++..+.--+|+|++.+ +.|-+.-. |.+.|-|+...- ...|-+|-
T Consensus 314 ----~~~l~~~dv~~~i--~~ya~~~~~TkiViG~~~~--------~rw~~~~~-~~l~~~L~~~~~-~idv~ii~ 373 (890)
T COG2205 314 ----IVTLYGGDVAKAI--ARYAREHNATKIVIGRSRR--------SRWRRLFK-GSLADRLAREAP-GIDVHIVA 373 (890)
T ss_pred ----EEEEeCCcHHHHH--HHHHHHcCCeeEEeCCCcc--------hHHHHHhc-ccHHHHHHhcCC-CceEEEee
Confidence 1111113333333 5555567799999999832 13432222 778877776542 33344443
No 139
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=76.10 E-value=34 Score=38.26 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred HHHHHHHhCchhHHHHHHHhHhcCCCchh-HHHH-HHHHHHHHHhhHHHHHHHhhhhcccchhh--HHHHHHHHHHHHHH
Q 040629 269 CSFVTEVTGTFSIVGAFVFGIIMPDRDLG-ALLF-ERFADFVSGIMLPLFFAMCGIRTNVHKVH--NWFLAGFVIILTCF 344 (786)
Q Consensus 269 ~~~~a~~~g~~~~lgafvaGl~~~~~~~~-~~l~-~~l~~~~~~l~~PlfF~~~G~~~d~~~l~--~~~~~~~ii~~~~~ 344 (786)
++-++..+|...++=-...|++......+ -+.. ..+..+...+.+.+...-.|++++++.+. .|....+..+..++
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~ 101 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHH
Confidence 34445566666655555667766652221 1111 24455555777777777889999998887 45544444445555
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHH
Q 040629 345 CKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVV 380 (786)
Q Consensus 345 ~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~ 380 (786)
.-.+....+.+.++.+|-|++.+|-+.+..-..++.
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF 137 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVF 137 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHH
Confidence 566666778888999999999999887665444433
No 140
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=75.50 E-value=26 Score=34.32 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.4
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCC--CeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANP--SVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~--~~~ltvv~~~ 644 (786)
||++.+.||.|+--++.++.+..++. +.+++.+++.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58999999999999999999987654 7788888886
No 141
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=75.30 E-value=6.7 Score=42.01 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=43.9
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCe-EEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhc
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSV-QLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~-~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 681 (786)
...+|||-|.||+|+-..|.++.+.|++.+- ++.|++.- - |-+.+...++++|.+..+
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD--~----------------E~QYs~TidyV~em~~~~ 84 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID--W----------------EAQYSCTIDYVQEMRESY 84 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc--c----------------hhhhhhHHHHHHHHHhcc
Confidence 4579999999999999999999999977665 78888873 1 223445566777776653
No 142
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=74.40 E-value=1.1e+02 Score=31.39 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHcccC----CChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcch
Q 040629 44 SLYFILRPLR----QPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSK 119 (786)
Q Consensus 44 ~~~~l~~rl~----~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~ 119 (786)
+.-++.||.+ .|-.++.++...++-......++|+ .+.++++.+ +|-.-.-|..-+--.++.+||+++
T Consensus 20 ~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~------~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w~ 91 (230)
T COG1346 20 AAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYM------KGGQWINFL--LGPATVALAVPLYKQRHLIKRHWK 91 (230)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHh------cccHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344555555 4667776665555543211112222 234555554 334445566666678899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 120 RELNIAAAGALIPMGVGAGLFFLTA 144 (786)
Q Consensus 120 ~~~~ia~~~~~ip~~~~~~~~~~l~ 144 (786)
....-.+.+..+.+..+..++.+++
T Consensus 92 ~I~~g~~vGs~~ai~s~~llak~~g 116 (230)
T COG1346 92 PILAGVLVGSVVAIISGVLLAKLFG 116 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8887777777777777776666664
No 143
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=73.85 E-value=1.3e+02 Score=32.12 Aligned_cols=308 Identities=14% Similarity=0.068 Sum_probs=151.4
Q ss_pred cCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHH
Q 040629 52 LRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALI 131 (786)
Q Consensus 52 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~i 131 (786)
.-.|.++--.++-+..-. .|. || ......+++-+--+-...++.=++.|.+++.|-++|-+.+=+. ..+
T Consensus 30 ~~Vpa~v~iy~gamff~t--~Gl-------fs-~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli-~sv 98 (384)
T COG5505 30 SAVPAAVIIYAGAMFFTT--VGL-------FS-VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLI-SSV 98 (384)
T ss_pred chhhHHHHHHHHHHHHhh--ccc-------cc-ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHH-HHH
Confidence 446766655444454433 233 44 2234455555555555566667899999999999998765444 344
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 040629 132 PMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPI- 210 (786)
Q Consensus 132 p~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~- 210 (786)
..++|+.+++...+++.+.-|. .+.+++-|-..--+....--+.+..| .-..+++..-|.+...++..+..+
T Consensus 99 ~~vlGfIl~yp~~ksf~gd~Wk-----a~gmi~gSytGGSaNmAAmqaaLeVP--~~~fsatlaaDtv~ySll~~lli~i 171 (384)
T COG5505 99 GTVLGFILAYPLLKSFIGDLWK-----AGGMISGSYTGGSANMAAMQAALEVP--GEYFSATLAADTVMYSLLFFLLISI 171 (384)
T ss_pred HHHHHHHHHHHHHhhhcchHHh-----hhhheeeeeeCCcchHHHHHhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776654231132 12222222111111111111223444 335677777787766444332211
Q ss_pred hcCC-----Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhH---
Q 040629 211 RSSP-----EN-APAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSI--- 281 (786)
Q Consensus 211 ~~~~-----~~-~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~--- 281 (786)
.... .. +--.-+..- ..-....--. .+. +|.+-..+...+...+....++..+|-+..
T Consensus 172 Vpy~~kw~~~tkpdesKL~A~---------~~e~a~~e~y--wKr--kp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s 238 (384)
T COG5505 172 VPYKWKWRHYTKPDESKLKAD---------GNEGASAESY--WKR--KPISLKDIAFLAGISLAVVAVAMKISGYLKSIS 238 (384)
T ss_pred HHHHHHHhhccCccHHHHhhh---------hhhhhhhhhh--hhc--CCccHHHHHHHhhHHHHHHHHHHHHHhhccccc
Confidence 1000 00 000000000 0000000000 011 222222333333333444444443332211
Q ss_pred ------------HHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 040629 282 ------------VGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILG 349 (786)
Q Consensus 282 ------------lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~~~~~~~~ii~~~~~~K~i~ 349 (786)
+=.-+.|+++.-.|+.+- .-.+++. .+++-.|++.++.-.|+..+...+..++......+...+.
T Consensus 239 ~gl~~~~gt~t~v~vsi~gLi~aLtPf~~l--pgs~elg-tv~lY~~v~vias~Ad~~~i~taP~~i~~gf~il~~h~~v 315 (384)
T COG5505 239 HGLLTGLGTQTLVLVSITGLIIALTPFERL--PGSQELG-TVLLYLFVVVIASPADLRLIVTAPLIILFGFIILISHLAV 315 (384)
T ss_pred cccccccceeeehHHHHHHHHHHhCccccC--Cchhhhh-HHHHHHHHHHhccchhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 112234555444332210 1123334 5666778999999999888873333334444445567777
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChh
Q 040629 350 TLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQ 394 (786)
Q Consensus 350 ~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~ 394 (786)
.+..++.++.+..+-..-.+ -|.-|-.+.-....+.++..+.+-
T Consensus 316 ~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~nr~lv~~g 359 (384)
T COG5505 316 SFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAKNRELVAPG 359 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhcCchhcchH
Confidence 88889999988866655544 577788888777777776555543
No 144
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=72.97 E-value=1e+02 Score=33.71 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCch--hHHH-HHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----
Q 040629 258 YLCFFLIGVVICSFVTEVTGTF--SIVG-AFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH---- 330 (786)
Q Consensus 258 ~~~~il~~~l~~~~~a~~~g~~--~~lg-afvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~---- 330 (786)
+....+.+.+..+++.+..|+. .++| +.++|.+..-....-.+-..+...+ .-+.=..+|.++..+.+.
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHHH
Confidence 3455556666777888877764 5778 6666666543111111112222222 223345678888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhh
Q 040629 331 NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLN 383 (786)
Q Consensus 331 ~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~ 383 (786)
+|....++.+..++.-.+..|+..|+.+.|..+++ |...|-|..++....
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA 135 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA 135 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH
Confidence 68888888888888899999999999878776664 345676666655544
No 145
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=72.50 E-value=12 Score=40.26 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.3
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.++++.|.||+|+--.|.+|.+.-...+.++.++++.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 5899999999999999999988765546678888885
No 146
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=72.49 E-value=9.7 Score=41.00 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.6
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.++++.|.||+|+--.|.+|.+.....+..+.++++.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 4678999999999999999999876556678888885
No 147
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=72.04 E-value=22 Score=37.31 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=66.7
Q ss_pred EEecccCcChHHHHHHHHHHhc-CCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEE
Q 040629 611 VMVFIGGPDDREALALAWRMSA-NPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNY 689 (786)
Q Consensus 611 ~v~f~Gg~ddreAL~~A~rma~-~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~ 689 (786)
-++..=.+.|+-|++.|.|+.+ ..+.++|++.+=+.. .++.+.+-.. .+-++...
T Consensus 30 gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~----------------------a~~~lr~aLA--mGaDrail 85 (260)
T COG2086 30 GVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ----------------------AEEALREALA--MGADRAIL 85 (260)
T ss_pred CCCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh----------------------hHHHHHHHHh--cCCCeEEE
Confidence 3445556899999999999999 699999999992111 2222332111 22233322
Q ss_pred EE---EEeCChHHHHHHHHHh-hhcCccEEEEccC--CCCcccc-cccCCcCCCCccccchhhhh
Q 040629 690 YE---KVVNNREETTGALREM-ELQKVGLYIVGRE--VMASAAT-ADLLGWSECPEIGAIGDLLV 747 (786)
Q Consensus 690 ~e---~~v~~~~e~~~~i~~~-~~~~~DLiiVGr~--~~~~~~~-~gl~~w~e~peLG~igd~la 747 (786)
.+ ..-.|+..|..+|.+. +..++||++.|+. +..+.++ ..+.+|--.|.++-+-++-.
T Consensus 86 i~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 86 ITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEI 150 (260)
T ss_pred EecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEE
Confidence 22 1123455666666654 4567999999997 3333222 33445555577766665543
No 148
>COG0679 Predicted permeases [General function prediction only]
Probab=71.14 E-value=83 Score=34.03 Aligned_cols=82 Identities=27% Similarity=0.258 Sum_probs=56.9
Q ss_pred cCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHH--HH
Q 040629 52 LRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAA--GA 129 (786)
Q Consensus 52 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~--~~ 129 (786)
++.|.+++.++ |+++....+ -+|+.-.+..+.+++...-+-|+..|+.+.....++...+....+.. -+
T Consensus 166 ~~nP~i~a~i~-g~~~~~~~i--------~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll 236 (311)
T COG0679 166 LTNPLIIALIL-GLLLNLLGI--------SLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLL 236 (311)
T ss_pred HhCcHHHHHHH-HHHHHHcCC--------CCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHH
Confidence 56788887754 566654322 23555678899999999999999999999997777777777766666 34
Q ss_pred HHHHHHHHHHHHHH
Q 040629 130 LIPMGVGAGLFFLT 143 (786)
Q Consensus 130 ~ip~~~~~~~~~~l 143 (786)
+.|.... .+...+
T Consensus 237 ~~Pl~~~-~~~~~~ 249 (311)
T COG0679 237 LAPLVAL-LVAKLL 249 (311)
T ss_pred HHHHHHH-HHHHHc
Confidence 4454433 344444
No 149
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=69.24 E-value=54 Score=35.55 Aligned_cols=88 Identities=22% Similarity=0.312 Sum_probs=52.8
Q ss_pred hHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 280 SIVGAFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----NWFLAGFVIILTCFCKILGTLLVS 354 (786)
Q Consensus 280 ~~lgafvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~~~~~~~ii~~~~~~K~i~~~l~~ 354 (786)
.++.+.++|...|. +..+..+. .|... .+...+.|...|++++...+. +|...+...+..++.=.+..+...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888 44333332 11222 344677788899999988887 666665556666666666666666
Q ss_pred HhcCCChHHHHHHHHH
Q 040629 355 HSYHMPLQDRLALGVL 370 (786)
Q Consensus 355 ~~~~~~~~~~~~lgl~ 370 (786)
+..+-...+.+..|+.
T Consensus 83 ~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 83 RLFPAFLPPELALGLL 98 (313)
T ss_pred HHhhccCCHHHHHHHH
Confidence 5553222333555554
No 150
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=68.87 E-value=1.7e+02 Score=31.53 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=83.7
Q ss_pred chhHHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 278 TFSIVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVS 354 (786)
Q Consensus 278 ~~~~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~ 354 (786)
.++.+=|.++|+++.- -+....+.+-++.+. +...|+-...+|+.++..... .+........+.++.-++.++...
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~ 259 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGIS 259 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888775 334566666777776 889999999999999877665 555566666667777777778878
Q ss_pred HhcCCChHHH--HHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 040629 355 HSYHMPLQDR--LALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417 (786)
Q Consensus 355 ~~~~~~~~~~--~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l 417 (786)
..++.+.... ..+-. ..|-+....+++. +.|. +++..+..+....+.+.++-|+.-++
T Consensus 260 ~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A~---~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 260 KLIGLRGLELSVAILQA-ALPGGAVAAVLAT---EYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHhCCChHHHHHHHHHH-cCChhhHHHHHHH---HhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765432 22222 2343444444433 3332 44555555455555566666665543
No 151
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=68.25 E-value=24 Score=33.68 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=27.8
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
+|++.|.||+|+--.|.++.+...+. -++.++++.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 58899999999999999998876542 456777774
No 152
>COG2431 Predicted membrane protein [Function unknown]
Probab=67.87 E-value=1.1e+02 Score=32.30 Aligned_cols=76 Identities=28% Similarity=0.261 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccC---hhHHH-hcchhhHHHHHHHHHH
Q 040629 56 RLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMD---VNSIK-SSSKRELNIAAAGALI 131 (786)
Q Consensus 56 ~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~i 131 (786)
++.+..+.|+++|-..-.. ....+...+..+.+++|.+|.++. ....+ .-.|+.+..++...+-
T Consensus 108 k~~~~vl~g~~~G~l~~~~------------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ils 175 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF------------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLS 175 (297)
T ss_pred HHHHHHHHHHHHHHHhccc------------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHH
Confidence 5677888888888542221 112456778899999999999887 32221 2236666666665555
Q ss_pred HHHHHHHHHHHH
Q 040629 132 PMGVGAGLFFLT 143 (786)
Q Consensus 132 p~~~~~~~~~~l 143 (786)
..+-|.+.++++
T Consensus 176 sliGG~iaa~~l 187 (297)
T COG2431 176 SLIGGLIAAFLL 187 (297)
T ss_pred HHHHHHHHHHHH
Confidence 555555444444
No 153
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=67.23 E-value=6 Score=33.55 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=28.6
Q ss_pred EEEecccCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 040629 610 VVMVFIGGPDDREALALAWRMSANPSVQLTVLRL 643 (786)
Q Consensus 610 I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~ 643 (786)
|++++.||+|+..++.+|.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44778888887
No 154
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=65.78 E-value=1.9 Score=44.80 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccc
Q 040629 308 VSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGW 386 (786)
Q Consensus 308 ~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~ 386 (786)
.++++=++.|.-+|..+|++.+. +.... ++-..+=+ -+..+++.+...|+..+|+-.+|.+-+.-|-.++.+.+...
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktl-lLGaAAQ~-GIF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~LA 159 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTL-LLGAAAQF-GIFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKLA 159 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHH-HhhhHHHh-chHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccccC
Confidence 45788889999999999998887 22211 11111111 12335556677789999999999987777776665544321
Q ss_pred -c-CCCCChhhHHHHHHHHHHHHHhHHHHHHhhccchhhhh
Q 040629 387 -D-KKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRII 425 (786)
Q Consensus 387 -~-~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~ 425 (786)
+ .+.+.-..|+-| + +.-++.||+.+.+-.+++|..
T Consensus 160 P~Ll~~iAvAAYSYM---A-LVPiIQPpimkaLTt~~ERkI 196 (375)
T COG1883 160 PELLGAIAVAAYSYM---A-LVPIIQPPIMKALTTKEERKI 196 (375)
T ss_pred HHHHHHHHHHHHHHH---H-HhhhcccHHHHHhcCHHHHHh
Confidence 1 122222233322 3 335778899888776655533
No 155
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=64.52 E-value=32 Score=33.14 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=54.8
Q ss_pred HHHHHHHhHhcCC-C---chhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-----H-HHHHHHHHHHHHHHHHHHH
Q 040629 281 IVGAFVFGIIMPD-R---DLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-----N-WFLAGFVIILTCFCKILGT 350 (786)
Q Consensus 281 ~lgafvaGl~~~~-~---~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-----~-~~~~~~ii~~~~~~K~i~~ 350 (786)
.-|+++.|+++.+ . |..-.+......+..++.+-+|...+|++.-...+. . +.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4577788887776 3 333344444555566788899999999998755444 2 2233333444444556667
Q ss_pred HHHHHhcCCChHHHHHHHHH
Q 040629 351 LLVSHSYHMPLQDRLALGVL 370 (786)
Q Consensus 351 ~l~~~~~~~~~~~~~~lgl~ 370 (786)
++..+++|+++. ...|..
T Consensus 104 ~~~~~~~~~~~~--~~~G~~ 121 (154)
T TIGR01625 104 VALIKLLRINYA--LTAGML 121 (154)
T ss_pred HHHHHHhCCCHH--HHHHHH
Confidence 777788899875 344443
No 156
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=63.20 E-value=1.9e+02 Score=29.87 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=28.5
Q ss_pred HHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 99 DLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTA 144 (786)
Q Consensus 99 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 144 (786)
.-.-|..-+--+.+.+||+++..+.-.+.|.++.++.+..++.+++
T Consensus 74 AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 74 ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3334444555667788888877766666666666666665555554
No 157
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=60.90 E-value=1.3e+02 Score=33.50 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHH-HHHhh--hhhhH
Q 040629 303 RFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHSYHMP-LQDRLAL-GVLMN--TKGIL 377 (786)
Q Consensus 303 ~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~-~~~~~~l-gl~l~--~rG~v 377 (786)
.+.+.+...++|+-..+.=++.|++.+. .-+-.+...+++.++-.+++.++...++.. -.|.+.+ |.+.+ .-|.+
T Consensus 51 ~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 51 PVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 4556666778888888888999999887 333445555566667777777776666543 2333322 22222 22555
Q ss_pred HHHHhhccccCCCCChhhHHHHH
Q 040629 378 AVVVLNLGWDKKVLHDQEYAVMV 400 (786)
Q Consensus 378 ~l~~~~~~~~~~~i~~~~~~~lv 400 (786)
..+.....++ .+++.++..+
T Consensus 131 N~~Av~~al~---~~~~~~~a~~ 150 (378)
T PF05684_consen 131 NFVAVAEALG---VSDSLFAAAL 150 (378)
T ss_pred HHHHHHHHHC---CCHHHHHHHH
Confidence 5555554443 2456666554
No 158
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=60.72 E-value=92 Score=36.72 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=51.4
Q ss_pred HHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHhhhhhhHH
Q 040629 309 SGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSHS---------YHMPLQDRLALGVLMNTKGILA 378 (786)
Q Consensus 309 ~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~~---------~~~~~~~~~~lgl~l~~rG~v~ 378 (786)
..+++|....-.|..+|...+. ++..++.+.+.+++.-.+.+....++ .++|+.+++.+|-++++-.-+.
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVA 148 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVA 148 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHH
Confidence 3678888888999999999888 66655555555544444333333321 2569999999999999988776
Q ss_pred HHH
Q 040629 379 VVV 381 (786)
Q Consensus 379 l~~ 381 (786)
..-
T Consensus 149 Vla 151 (559)
T TIGR00840 149 VLA 151 (559)
T ss_pred HHH
Confidence 653
No 159
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=59.73 E-value=79 Score=33.65 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=33.9
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeec
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHS 645 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~ 645 (786)
.++|+|.+.||+|+--+|.+..++.++ .++.+++|.+
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~ 57 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDH 57 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecC
Confidence 369999999999999999999999988 9999999973
No 160
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=59.45 E-value=66 Score=36.66 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=44.0
Q ss_pred ceEEEEecccCcChHHHHHHHHHHh-cCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMS-ANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTA 682 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma-~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 682 (786)
.++|++.+.||+|+--.|.+..++. ..++.+++++|+...-. .+.+.+.++..++.+++.
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr----------------~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS----------------PNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC----------------cchHHHHHHHHHHHHHcC
Confidence 4689999999999999888888776 45688999999972111 122335677888877653
No 161
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=56.71 E-value=51 Score=35.30 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHH
Q 040629 58 VTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGA 137 (786)
Q Consensus 58 v~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~ 137 (786)
+-.++.|+++|..- +++.+.+ ..-..+-+.|+-|..|-.+|++.+.+.+-.-.++++..++++.....
T Consensus 175 llP~iiG~iLGNLD---~~~r~fl---------~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 175 LLPIIIGMILGNLD---PDFRKFL---------APGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHHhcCC---HHHHHHH---------hcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 44567899998631 2222222 22223445678899999999999999998888888877766665555
Q ss_pred HHHHHH
Q 040629 138 GLFFLT 143 (786)
Q Consensus 138 ~~~~~l 143 (786)
....++
T Consensus 243 ~~dr~i 248 (314)
T PF03812_consen 243 LADRLI 248 (314)
T ss_pred HHHHHH
Confidence 544444
No 162
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=56.67 E-value=50 Score=33.83 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=65.3
Q ss_pred EEEEeEEecCCC-ChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCCCC
Q 040629 526 SVHPLTAMSPFI-TMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDN 604 (786)
Q Consensus 526 ~v~~~t~vs~~~-~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~~~ 604 (786)
...++|.++|.+ ...++|.+.+.+-++|.|++| |..+.+......+.+++-++..-||-++...... - +
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~-i-s 84 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--------GSDGVTEENVDNVVEAIKERTDLPVILFPGSPSG-I-S 84 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--------CcccccHHHHHHHHHHHHhhcCCCEEEecCChhc-c-C
Confidence 347899999999 899999999999999999997 4444444457888889888999998665432211 1 1
Q ss_pred CcceEEEEecccCcCh--------HHHHHHHHHHh
Q 040629 605 GRMQHVVMVFIGGPDD--------REALALAWRMS 631 (786)
Q Consensus 605 ~~~~~I~v~f~Gg~dd--------reAL~~A~rma 631 (786)
...+.+++|-.=..+| .++.....++-
T Consensus 85 ~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~ 119 (240)
T COG1646 85 PYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLG 119 (240)
T ss_pred ccCCeEEEEEEecCCCcccccchhhhhhHHHHhhh
Confidence 1234566554444333 45555555554
No 163
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=55.61 E-value=72 Score=29.25 Aligned_cols=87 Identities=9% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCcEEEEEEeecccCCCchhhhhcccCC-CcccccCCCCCcchHHHHHHHhHhcC-CceEEEEeEEecCCCChHHHHHH
Q 040629 468 ESPLCIFALHLVELRGSASAVLIVHTSSK-NSAYKRVGSSPSDRIVNIFEAFENRS-TGISVHPLTAMSPFITMHEDVCN 545 (786)
Q Consensus 468 ~~~~~v~~lhlvel~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~~~~dI~~ 545 (786)
.-.-.|.-+|++|.++-. +.+..++--- .+.. -.....+...+.+++..+.. .++-+..-... ..+.+++.+
T Consensus 20 gL~r~V~~v~v~e~~d~~-~~l~~gElvlttg~~--~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP~~~i~ 93 (123)
T PF07905_consen 20 GLDRPVRWVHVMEAPDPS-DWLRGGELVLTTGYA--LRDDDEEELREFIRELAEKGAAGLGIKTGRYL---DEIPEEIIE 93 (123)
T ss_pred cCCCcEEEEEEeecCCHH-HhCCCCeEEEECCcc--cCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc---ccCCHHHHH
Confidence 344568999999987532 2221111100 0000 01001223555666666653 44444443322 368899999
Q ss_pred HHhhcCccEEEEccc
Q 040629 546 LAEDKHIAFMILPFH 560 (786)
Q Consensus 546 ~A~e~~adlIIlp~h 560 (786)
+|++++-.+|.+||+
T Consensus 94 ~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 94 LADELGLPLIEIPWE 108 (123)
T ss_pred HHHHcCCCEEEeCCC
Confidence 999999999999997
No 164
>COG2985 Predicted permease [General function prediction only]
Probab=54.68 E-value=64 Score=36.61 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=67.7
Q ss_pred cCCChhHHHHHHHHhhCccCCCc--cccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHH---HhcchhhHHHHH
Q 040629 52 LRQPRLVTDILGGLLLGPSFFGR--KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSI---KSSSKRELNIAA 126 (786)
Q Consensus 52 l~~P~iv~~ilaGiilGP~~lg~--~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia~ 126 (786)
+++-..-|.+++|++||- +|. |.++ ..| ......+.++|+++||=-+|++---+.. -..+-.....+.
T Consensus 393 ~~LG~aGGpLivaLiLG~--ig~iGpl~w--~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~ 465 (544)
T COG2985 393 FKLGNAGGPLIVALILGF--IGAIGPLTW--FMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGA 465 (544)
T ss_pred EeecccccHHHHHHHHHH--hcccCceEE--EcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHH
Confidence 334456678899999885 343 3222 234 3457788899999888777776543332 233444455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-HHHhhccHHHHHHH
Q 040629 127 AGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWG-LTLTVTGFPAVTWI 174 (786)
Q Consensus 127 ~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~i 174 (786)
.-.++|.+.++.++.++.+. + .....| ++=+.|++|...-.
T Consensus 466 lit~vp~i~~~llg~~v~km----n---~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 466 LVTLVPVIIVFLLGRYVLKM----N---WLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhc----c---HHHHhhHHhcCCCChHHHHHH
Confidence 66667888888888777652 2 344445 44488998866543
No 165
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=53.35 E-value=1.8e+02 Score=28.50 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=57.6
Q ss_pred chhHHHHHHHhHhcCC-C---chhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----HHHHHHHHHHHHHHHHHHH
Q 040629 278 TFSIVGAFVFGIIMPD-R---DLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----NWFLAGFVIILTCFCKILG 349 (786)
Q Consensus 278 ~~~~lgafvaGl~~~~-~---~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~~~~~~~ii~~~~~~K~i~ 349 (786)
+...-|+.+.|+++.+ . |.. +......+..++.+-+|...+|++.-...+. ......++-++.++.-.+.
T Consensus 23 LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~ 100 (169)
T PF06826_consen 23 LGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLI 100 (169)
T ss_pred ccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344467777777766 2 222 4445555566788899999999988754443 2222333344444445555
Q ss_pred HHHHHH-hcCCChHHHHHHHHHhhhhh-hHHHHHhhcc
Q 040629 350 TLLVSH-SYHMPLQDRLALGVLMNTKG-ILAVVVLNLG 385 (786)
Q Consensus 350 ~~l~~~-~~~~~~~~~~~lgl~l~~rG-~v~l~~~~~~ 385 (786)
++..++ ++|+++.. ..|..-+... .-.+..++-.
T Consensus 101 ~~~~~~~~~~l~~~~--~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGI--AAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHcCCCHHH--HHHHHHccccCcHHHHHHHHh
Confidence 666666 88888643 3344332222 2334444444
No 166
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=52.70 E-value=66 Score=36.09 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=35.2
Q ss_pred CCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 597 KGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 597 rg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
+|.+|-+-.+..++++.+.||.|+--|+.++.+. +.++..+++.
T Consensus 166 ~g~GGlP~g~~gkvvvllSGGiDS~vaa~l~~k~----G~~v~av~~~ 209 (394)
T PRK01565 166 PGAGGLPVGTSGKALLLLSGGIDSPVAGYLAMKR----GVEIEAVHFH 209 (394)
T ss_pred ecCCCCccCCCCCEEEEECCChhHHHHHHHHHHC----CCEEEEEEEe
Confidence 3555555567789999999999999999888662 6788888886
No 167
>COG2035 Predicted membrane protein [Function unknown]
Probab=51.64 E-value=3.2e+02 Score=28.89 Aligned_cols=45 Identities=31% Similarity=0.496 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhC--ccCCCc
Q 040629 28 IPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLG--PSFFGR 74 (786)
Q Consensus 28 l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilG--P~~lg~ 74 (786)
.|+..--+.-+..+++++.++++. .|..+-...+|+++| |+.++.
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~ 105 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKE 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666777888888888877 677777778999998 554444
No 168
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=51.09 E-value=1.5e+02 Score=35.06 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040629 228 SLTCIYAVRPGLEWLIRR 245 (786)
Q Consensus 228 ~~~~~~v~r~~~~~~~~~ 245 (786)
....+++.|++..|+.++
T Consensus 579 ~ftAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 579 MFTGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344566778777776654
No 169
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=49.87 E-value=1.3e+02 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=27.9
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++++.|.||.|+--++.++.+. +.+++.+++.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d 32 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFN 32 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEe
Confidence 4789999999999999999873 7788889887
No 170
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=49.77 E-value=3.4e+02 Score=29.60 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=39.5
Q ss_pred HHHHhh--hhcccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHh---hhhhhHHHHHhhcc
Q 040629 316 FFAMCG--IRTNVHKVH----NWFLAGFVIILTCFCKILGTLLVSHS-YHMPLQDRLALGVLM---NTKGILAVVVLNLG 385 (786)
Q Consensus 316 fF~~~G--~~~d~~~l~----~~~~~~~ii~~~~~~K~i~~~l~~~~-~~~~~~~~~~lgl~l---~~rG~v~l~~~~~~ 385 (786)
+|.+.| ++++++.+. .+.......+.-++..++.++..++. ++.+.. +.+|+.+ .|-|..+.+...++
T Consensus 50 ~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 50 ILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 344444 666666665 56666666677777788888877775 466543 5555432 34444444443333
No 171
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=49.74 E-value=43 Score=37.29 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 598 GQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 598 g~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
|.+|-+-.+..++++.+.||.|+--|+.++.+. +.++..+++.
T Consensus 163 g~gGlP~g~~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~ 205 (371)
T TIGR00342 163 GIGGLPVGTQGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFF 205 (371)
T ss_pred cCCCcCcCcCCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEe
Confidence 555555567789999999999999999888662 7789999997
No 172
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=49.73 E-value=81 Score=33.06 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=30.7
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCC--CeEEEEEEee
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANP--SVQLTVLRLH 644 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~--~~~ltvv~~~ 644 (786)
..+|++.+.||+|+--.|.++.++.++. +.++..+++.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 4699999999999999888888887653 4577777774
No 173
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=49.23 E-value=1.2e+02 Score=32.60 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHH
Q 040629 57 LVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVG 136 (786)
Q Consensus 57 iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~ 136 (786)
.+-.++.|+++|.. . +++.+.+- .-..+-..|+-|..|-.+|++.+.+.+-.-..+++..++++....
T Consensus 174 ~ilPlliG~ilGNL--D-~~~r~fl~---------~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 174 AVLPFLVGFALGNL--D-PELRDFFS---------KAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHHhcC--C-HHHHHHhc---------cCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34456789999863 1 22222222 222344567889999999999999998887878877776666665
Q ss_pred HHHHHHH
Q 040629 137 AGLFFLT 143 (786)
Q Consensus 137 ~~~~~~l 143 (786)
+....++
T Consensus 242 ~~~dr~~ 248 (314)
T TIGR00793 242 ILADKFI 248 (314)
T ss_pred HHHHHHh
Confidence 5555444
No 174
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=48.02 E-value=36 Score=32.77 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.0
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++++.|.||+|+.-.|.++.+...+. .++.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 58899999999999999999999884 555553
No 175
>COG3371 Predicted membrane protein [Function unknown]
Probab=47.96 E-value=1.2e+02 Score=29.83 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=43.7
Q ss_pred ccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHH
Q 040629 51 PLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNI 124 (786)
Q Consensus 51 rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~i 124 (786)
|.+-+.-.-.+++|+.+.-. | +||++. ..+.+..+...+++|.+.+-+.....+++.+....+
T Consensus 73 k~~~~g~~ll~is~lfLaLV--G-------VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 73 KIENYGGALLIISGLFLALV--G-------VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HhhhcchHHHHHHHHHHHhe--e-------eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 55656666677777776532 2 366443 567778888888999999999888888765544433
No 176
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=45.93 E-value=5.2e+02 Score=29.76 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 169 PAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVL 208 (786)
Q Consensus 169 ~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~ 208 (786)
--+.+.+++.+. ..++.+..++..+.+|.+..+.-...+
T Consensus 268 ~~l~~t~k~~~~-~~~~~~fLia~~l~~dg~~ti~~~~~i 306 (477)
T PF11700_consen 268 KRLWRTFKEIRK-LRQLFLFLIAYFLYSDGVNTIISFAGI 306 (477)
T ss_pred HHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677665 568899999999999998876654433
No 177
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=45.47 E-value=1.3e+02 Score=32.95 Aligned_cols=91 Identities=16% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHccc-CCChhHHHHHHHHhhCccCCCccccccccccCCchh----HHHHHHHHHHHHHHHHHhhc-cChhHHHhcc
Q 040629 45 LYFILRPL-RQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVT----TLETVAYMALDLYIFLIGLE-MDVNSIKSSS 118 (786)
Q Consensus 45 ~~~l~~rl-~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~----~l~~l~~igl~~llF~~Gle-~d~~~l~~~~ 118 (786)
++.+++.+ ++|..+-.++.|+++-- +|. .|++..+ .-+.+..--...+++-.|+. +|++++.+..
T Consensus 194 ~g~l~~~~~~Ih~~v~mII~~vi~k~--~gl-------lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 194 AGGLLKSFPGIPAYAFMILIAAALKA--FGL-------VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHH--hCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 33444443 68999999999999875 343 3322222 22233333333455557886 8999998877
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 119 -KRELNIAAAGALIPMGVGAGLFFLTA 144 (786)
Q Consensus 119 -~~~~~ia~~~~~ip~~~~~~~~~~l~ 144 (786)
.+.+.+.+.+++--.+.++.++.++.
T Consensus 265 t~~~vviiv~~Vlg~ii~s~lvGKllG 291 (347)
T TIGR00783 265 SWQFVVICLSVVVAMILGGAFLGKLMG 291 (347)
T ss_pred chhHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 44444444444444444445555554
No 178
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=45.35 E-value=54 Score=30.76 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred CChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccC-CCceEEEecCCCC
Q 040629 537 ITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANA-PCSVGIFVDKGQG 600 (786)
Q Consensus 537 ~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~A-pCsVgIlvdrg~~ 600 (786)
....+.+.+++++++++.||+|...+. ||..+......+.+.+++-++. ++|| .++|....
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCChh
Confidence 578899999999999999999987553 5665544456888888998887 8998 56776543
No 179
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=45.34 E-value=2.7e+02 Score=26.34 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=20.1
Q ss_pred hHHHHHH--Hhhhhcccchhh-HHHHHHHHHHHHHHHHHHHH
Q 040629 312 MLPLFFA--MCGIRTNVHKVH-NWFLAGFVIILTCFCKILGT 350 (786)
Q Consensus 312 ~~PlfF~--~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~ 350 (786)
-+|+||+ .+|.-..++.+. +|+.+++.+++..+.=++++
T Consensus 68 ~m~LfFVPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vt 109 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMSQYPVQIIGVIIVATILLLACT 109 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577776 455555566665 55544444444444434333
No 180
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=45.33 E-value=27 Score=39.85 Aligned_cols=80 Identities=15% Similarity=0.332 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhhcCccEEEEc---cccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC-CCC-------CCc
Q 040629 538 TMHEDVCNLAEDKHIAFMILP---FHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG-KSD-------NGR 606 (786)
Q Consensus 538 ~~~~dI~~~A~e~~adlIIlp---~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~-~~~-------~~~ 606 (786)
...++||++|+++++|+|++| ||..-.+. ..-+..++.+-+.-+-.-||..=++-|.+.. +.. ...
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr---~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp 115 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGGDLFHENKPSR---KTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP 115 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCCccH---HHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC
Confidence 357899999999999999998 34221110 0111234444455566789999999888753 211 123
Q ss_pred ceEEEEeccc--CcCh
Q 040629 607 MQHVVMVFIG--GPDD 620 (786)
Q Consensus 607 ~~~I~v~f~G--g~dd 620 (786)
..+|.+|.++ |.||
T Consensus 116 NlNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 116 NLNISIPVFSIHGNHD 131 (646)
T ss_pred CcceeeeeEEeecCCC
Confidence 3477777663 4444
No 181
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=44.49 E-value=1.7e+02 Score=32.92 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=65.7
Q ss_pred chHHHHHHHhccCC--CceEEEecCCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCc
Q 040629 575 PFREVNKNILANAP--CSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNV 651 (786)
Q Consensus 575 ~~~~vn~~Vl~~Ap--CsVgIlvdrg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~ 651 (786)
...+++++|+-.+| |.= |+.++ ....+|||.|.||-|.---..++.+.+.. +-.+-++.+- .+++...
T Consensus 224 l~ds~k~rvl~i~~rl~~~-i~~~c-------~~~s~VcVlfSGGvDs~vvA~l~h~~vp~-ne~IdLINVaF~n~e~~~ 294 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPPRLCAN-ILLRC-------IHESNVCVLFSGGVDSTVVAVLAHYVVPE-NEPIDLINVAFGNPEGSK 294 (520)
T ss_pred HHHHHhhhhhccChhHhhh-ccccc-------cccCcEEEEecCCchHHHHHHHHHhhcCC-CCceeEEEeeccCCCccc
Confidence 46678888888887 221 22221 12359999999999999999999988844 3455555554 2221100
Q ss_pred cccccccccccCcchhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHHHH
Q 040629 652 KEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETT 701 (786)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~ 701 (786)
+.+ .++|+....-++|++..+.. ....+.| |+-.-|+.
T Consensus 295 ~~~---------~PDRktgr~g~~eL~s~~P~-R~~nlV~--vnV~~~El 332 (520)
T KOG0573|consen 295 EQN---------VPDRKTGRRGLEELQSLYPK-RSWNLVE--VNVTYEEL 332 (520)
T ss_pred ccC---------CccHHHHHHHHHHHHHhCCc-ceEEEEe--ccCCHHHH
Confidence 011 47888888999999887653 3344444 44433333
No 182
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=44.10 E-value=5.4e+02 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHcccC--CChhHHHHHHHHhh
Q 040629 32 IVQLAFIITITRSLYFILRPLR--QPRLVTDILGGLLL 67 (786)
Q Consensus 32 l~~i~lil~~~~~~~~l~~rl~--~P~iv~~ilaGiil 67 (786)
++.+.+-+.++...-+++.+.| .+..++-.+.++-.
T Consensus 86 mIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa 123 (480)
T KOG2563|consen 86 MIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGA 123 (480)
T ss_pred HHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 3344455666777788888844 56666666655533
No 183
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=43.15 E-value=4.9e+02 Score=28.65 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=55.9
Q ss_pred hhHHHHHHHhHhcCC-Cchh-----HHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh---HHHHHHHHHHHHHHHHHHH
Q 040629 279 FSIVGAFVFGIIMPD-RDLG-----ALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH---NWFLAGFVIILTCFCKILG 349 (786)
Q Consensus 279 ~~~lgafvaGl~~~~-~~~~-----~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~---~~~~~~~ii~~~~~~K~i~ 349 (786)
++.+=+.++|+++.- ++.. ..+.+-++.+. ....|+-.+..|..+...... .+......++..++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 566666666777665 3222 55666666666 888999999999988754332 3444444577777777888
Q ss_pred HHHHHHhcCCChH
Q 040629 350 TLLVSHSYHMPLQ 362 (786)
Q Consensus 350 ~~l~~~~~~~~~~ 362 (786)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 8888888876554
No 184
>COG2431 Predicted membrane protein [Function unknown]
Probab=43.13 E-value=4.3e+02 Score=27.98 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhh
Q 040629 336 GFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLN 383 (786)
Q Consensus 336 ~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~ 383 (786)
+..-+...++-.++..+++.+.++|++++++++..++=-......++.
T Consensus 166 l~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 166 LILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 445556667788889999999999999999988776655555555554
No 185
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=42.18 E-value=1e+02 Score=33.55 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=34.2
Q ss_pred EEEEEe-CChHHHHHHHHHhhhcCccEEEEccC-CCCcccccccCCcCCCCccc
Q 040629 689 YYEKVV-NNREETTGALREMELQKVGLYIVGRE-VMASAATADLLGWSECPEIG 740 (786)
Q Consensus 689 ~~e~~v-~~~~e~~~~i~~~~~~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG 740 (786)
|.|.+- ...+||+.+.|+|.+.+.||+++--+ |-.....++. =.+-|.||
T Consensus 77 ~~~~~~~tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av--~~~vPvLG 128 (355)
T COG3199 77 FQESTPRTTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV--GADVPVLG 128 (355)
T ss_pred ecccCCCccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc--cCCCceEe
Confidence 777766 66799999999996668999988665 4322233332 24566666
No 186
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=41.94 E-value=4e+02 Score=27.22 Aligned_cols=72 Identities=14% Similarity=-0.001 Sum_probs=44.9
Q ss_pred HHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccHHHHHHHHHhcCc
Q 040629 101 YIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKL 180 (786)
Q Consensus 101 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l 180 (786)
.-+..-+-=..+.+||+++....-...+.++.+..+..++++++. + ..+..+.+-=....|+...+-++++-
T Consensus 60 VALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl-----~---~~~~~Sl~pkSVTtpiAi~is~~iGG 131 (215)
T PF04172_consen 60 VALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGL-----S---PEIILSLAPKSVTTPIAIEISEQIGG 131 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----C---HHHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 334444445678888988888777777777777776666666642 2 34444444433345777777777664
No 187
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=40.93 E-value=3e+02 Score=33.84 Aligned_cols=42 Identities=5% Similarity=0.088 Sum_probs=27.7
Q ss_pred CcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeeccc
Q 040629 439 AELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELR 482 (786)
Q Consensus 439 ~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~ 482 (786)
...+|.+-.-+..+-..++.++...+.. ....++++|.++-.
T Consensus 613 ~~~~v~~lF~GG~DDrEALa~~~rm~~~--~~v~lTVirf~~~~ 654 (769)
T KOG1650|consen 613 SSYKVVVLFLGGKDDREALALAKRMAEN--PRVTLTVIRFFPDE 654 (769)
T ss_pred ceeEEEEEecCChhhHHHHHHHHHHhhC--CceEEEEEEeeccc
Confidence 3445555454444455588888888753 67889999998643
No 188
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=40.93 E-value=2.8e+02 Score=30.05 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCChhhHHHHHHH
Q 040629 334 LAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIA 402 (786)
Q Consensus 334 ~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~ 402 (786)
.+...+++.++.-+++-.+..++.|++..|+..++-..+.-+.++++.+....+..-+..+-|....+.
T Consensus 56 ~~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~a 124 (327)
T PF05982_consen 56 PLLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLA 124 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHH
Confidence 344455555555566666666678999999999999999999999999988888888888877666433
No 189
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=40.56 E-value=2.5e+02 Score=30.49 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHH---HHHHHHHH
Q 040629 97 ALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVG---AGLFFLTA 144 (786)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~---~~~~~~l~ 144 (786)
-+.+||...|++-- ++++..+|..+.+...+++.|++-+ ..++++++
T Consensus 212 ~L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~g 261 (327)
T PF05982_consen 212 VLCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLG 261 (327)
T ss_pred HHHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35667777777542 3344334444445556666776544 44444443
No 190
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=40.34 E-value=3.9e+02 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 222 ISTIAFSLTCIYAVRPGLEWLIRR 245 (786)
Q Consensus 222 ~~~~~~~~~~~~v~r~~~~~~~~~ 245 (786)
+..+.-....+++.+|+..|+.++
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334444455677888888887653
No 191
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=39.42 E-value=4.9e+02 Score=27.60 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHhhccHHHHHHHHHh--cCccCChhHHHHHHHHHHHHHHHHHHH
Q 040629 157 LFWGLTLTVTGFPAVTWILGE--LKLLQTDIGRLATSIAMISDVCSWILV 204 (786)
Q Consensus 157 l~lg~~ls~Ts~~vv~~iL~e--l~ll~s~~g~l~ls~a~i~D~~~~~ll 204 (786)
+.....++.....++.-+.+. .+....++|..++-+=++|-....+-.
T Consensus 146 ~~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGi 195 (273)
T PF01889_consen 146 LLIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGI 195 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhe
Confidence 333333333333334444433 355566677777777766665554443
No 192
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=39.15 E-value=1.6e+02 Score=28.27 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=25.2
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++++.|.||.|+--++.++.+. +.++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5789999999999999888763 3456667774
No 193
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=39.00 E-value=4e+02 Score=26.41 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHH--HhCchhHHHHHHHhHhcCCCchhHHHHHHHHH
Q 040629 229 LTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTE--VTGTFSIVGAFVFGIIMPDRDLGALLFERFAD 306 (786)
Q Consensus 229 ~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~--~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~ 306 (786)
.+..++..+....+..|.++. ...++..++..+......+ ..-...+++++++=++...+..++.....+..
T Consensus 38 ~i~ali~g~vyml~~~KV~K~------G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay 111 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKR------GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAY 111 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 334455666666777777643 1222222222222222222 22334566777777777555444433333222
Q ss_pred H-----HHHhhHHHHHHHhhhhc-------cc---chhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040629 307 F-----VSGIMLPLFFAMCGIRT-------NV---HKVH---NWFLAGFVIILTCFCKILGTLLVSHSYH 358 (786)
Q Consensus 307 ~-----~~~l~~PlfF~~~G~~~-------d~---~~l~---~~~~~~~ii~~~~~~K~i~~~l~~~~~~ 358 (786)
. ..+-+.|++|.-=...- +- ..+. +.+...+.++..+++-++|+++..+..+
T Consensus 112 ~vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 112 AVFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12567788776444431 11 1111 3345667777788888899988888764
No 194
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=38.91 E-value=47 Score=31.29 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC
Q 040629 539 MHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 539 ~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
..+.+.+++++++++.||+|...+ .||.........+.+.+++-++.++|| +++|.-..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCcC
Confidence 468899999999999999998764 356554444557888888888778997 67776543
No 195
>PRK08185 hypothetical protein; Provisional
Probab=38.69 E-value=73 Score=33.97 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=70.1
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
++..|-.+-..+ ..+.+.+++.|++.++.+|+.-..+.-...| ..+....+...++++.||.+=-|+|..-.
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~~~e 82 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGATIE 82 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 445555555555 5789999999999999999998764322212 23778888999999999999999985410
Q ss_pred C-----CCcceEEEEecccCc-ChHHHHHHHHHHh---cCCCeEE
Q 040629 603 D-----NGRMQHVVMVFIGGP-DDREALALAWRMS---ANPSVQL 638 (786)
Q Consensus 603 ~-----~~~~~~I~v~f~Gg~-ddreAL~~A~rma---~~~~~~l 638 (786)
. ..-...|. ++|.. +.+|=++.++++. ...++.+
T Consensus 83 ~i~~ai~~Gf~SVM--~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 83 DVMRAIRCGFTSVM--IDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHcCCCEEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 01122333 37764 4466666666655 5556655
No 196
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=37.24 E-value=4.6e+02 Score=26.62 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 155 GCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVL 208 (786)
Q Consensus 155 ~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~ 208 (786)
..-++|-..|.|+. +..+-++.|. +.+..+......++.....++=..+..
T Consensus 25 ltg~~GGlvSSTA~--t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R~l~iv 75 (211)
T PF13194_consen 25 LTGLLGGLVSSTAT--TVSLARRSRE-NPELSRLLAAGILLASAVMFVRVLLIV 75 (211)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666653 4444444443 444556666666666665554444433
No 197
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.95 E-value=79 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEEe---CChHHHHHHHHHhhhc----CccEEEEccCCC
Q 040629 670 DAEFVNEFRLQTAGEHNVNYYEKVV---NNREETTGALREMELQ----KVGLYIVGREVM 722 (786)
Q Consensus 670 d~~~l~~~~~~~~~~~~v~~~e~~v---~~~~e~~~~i~~~~~~----~~DLiiVGr~~~ 722 (786)
-.++++..+.++.. -++.+....| +...+++++|+.+++. +||++|++|+|.
T Consensus 28 ~~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 28 IQDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred HHHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 45677777665442 2466666667 5578899999988433 499999999954
No 198
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=36.18 E-value=1.1e+02 Score=33.74 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=60.1
Q ss_pred cchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCC-CC----------CCCCCCcch
Q 040629 508 SDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGN-SN----------GDTTGSSPF 576 (786)
Q Consensus 508 ~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~-~G----------~~~~~~~~~ 576 (786)
.+++.+.++...+ .+..|-.+-..+ ..+.+.+++.|++.+.++||.-+.+.-.. .| +.-.....+
T Consensus 12 ~~~~~~lL~~A~~--~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (357)
T TIGR01520 12 GDDVHKLFQYAKE--NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAG 87 (357)
T ss_pred HHHHHHHHHHHHH--CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHH
Confidence 4556666665333 344555555554 47899999999999999999987643221 11 111111226
Q ss_pred HHHHHHHhccCCCceEEEecCCCC
Q 040629 577 REVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 577 ~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
....+...+++++||++=-|+|..
T Consensus 88 ~~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 88 AHHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC
Confidence 777888999999999999999965
No 199
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=36.15 E-value=4.2e+02 Score=25.83 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=51.1
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
||++++.+-.+.-.++.++...... .+..+.++|+-.-.. ..+++-.+..+++.+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~--~~~~~~~~~vdh~~~----------------------~~s~~~~~~v~~~~~~ 56 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRR--NGIKLIAVHVDHGLR----------------------EESDEEAEFVEEICEQ 56 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTT--TTTEEEEEEEE-STS----------------------CCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh--cCCCeEEEEEecCCC----------------------cccchhHHHHHHHHHh
Confidence 6899999888888888889888855 566889988873211 1122223344455544
Q ss_pred CCceEEEEeEEe---cCCCCh--------HHHHHHHHhhcCccEEEEccc
Q 040629 522 STGISVHPLTAM---SPFITM--------HEDVCNLAEDKHIAFMILPFH 560 (786)
Q Consensus 522 ~~~v~v~~~t~v---s~~~~~--------~~dI~~~A~e~~adlIIlp~h 560 (786)
.+++......- .+..+. ++-+.+.|++.+++.|++|-|
T Consensus 57 -~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh 105 (182)
T PF01171_consen 57 -LGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHH 105 (182)
T ss_dssp -TT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---B
T ss_pred -cCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCc
Confidence 34443322221 111121 134556888999999999988
No 200
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=36.03 E-value=4.5e+02 Score=26.14 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=41.8
Q ss_pred hhHHHHHHHhHhcCCCchhHHHHHHHHH-----H-HHHhhHHHHHHHhhhhc-------c---cchhh---HHHHHHHHH
Q 040629 279 FSIVGAFVFGIIMPDRDLGALLFERFAD-----F-VSGIMLPLFFAMCGIRT-------N---VHKVH---NWFLAGFVI 339 (786)
Q Consensus 279 ~~~lgafvaGl~~~~~~~~~~l~~~l~~-----~-~~~l~~PlfF~~~G~~~-------d---~~~l~---~~~~~~~ii 339 (786)
..+++++++=++...+..++.....+.. + ..+-++|+||..-...- + ...+. .++...+.+
T Consensus 86 ~~ii~gliaeli~~~g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 165 (189)
T TIGR02185 86 SSIIGGLLADIIASTGGYKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIMI 165 (189)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHHH
Confidence 3455566666666544444333222221 1 12335788774322211 1 11111 234455666
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 040629 340 ILTCFCKILGTLLVSHSYHM 359 (786)
Q Consensus 340 ~~~~~~K~i~~~l~~~~~~~ 359 (786)
+..+++-++|+++..+.++-
T Consensus 166 ~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 166 VLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777788999888887653
No 201
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=35.07 E-value=4e+02 Score=25.26 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHHHHhhCccCCCccccccccccCCchhHHH-----HHHHHHHHH
Q 040629 29 PLLIVQLAFIITITRSLYFILRPLRQPR---LVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLE-----TVAYMALDL 100 (786)
Q Consensus 29 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~-----~l~~igl~~ 100 (786)
..++.|+++++.+..+...+.+-+++|- ++|+++.=+.+. ++. + ..+.++ .+.++++.|
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~------v----k~~~v~~~a~~LL~~m~LfF 73 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKV------V----KLEQVESLGTALTNNIGFLF 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCC------c----CHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888777777777553 455444322221 122 0 112222 233444444
Q ss_pred HHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 040629 101 YIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLT 143 (786)
Q Consensus 101 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l 143 (786)
+==.+|+=..++.+++++.+.+..-+.+.++.++.+..+..++
T Consensus 74 VPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l 116 (141)
T PRK04125 74 VPSGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFI 116 (141)
T ss_pred hhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444777777777887777766666666666655555444443
No 202
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=34.18 E-value=2e+02 Score=25.10 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=25.3
Q ss_pred EEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 610 VVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 610 I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
|++.+.||+|+--.+.++.+... ++..+++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~ 31 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVD 31 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEc
Confidence 57889999999999999988643 67777775
No 203
>PRK06801 hypothetical protein; Provisional
Probab=34.03 E-value=2.4e+02 Score=30.13 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
++..|-.+-..+ ..+...|++.|++.++.+||.-....-... +-..+....+...++++.||++=-|+|..-.
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~-----~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e 88 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYI-----SLESLVEAVKFEAARHDIPVVLNLDHGLHFE 88 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcC-----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 455555666555 478999999999999999998776332211 1134788888999999999999999985410
Q ss_pred C-----CCcceEEEEecccCcCh-HHHHHHHHHH---hcCCCeEE
Q 040629 603 D-----NGRMQHVVMVFIGGPDD-REALALAWRM---SANPSVQL 638 (786)
Q Consensus 603 ~-----~~~~~~I~v~f~Gg~dd-reAL~~A~rm---a~~~~~~l 638 (786)
. ..-...|.+ +|...+ +|-++.++++ |+..++.|
T Consensus 89 ~i~~Ai~~GftSVm~--D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 89 AVVRALRLGFSSVMF--DGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHhCCcEEEE--cCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 011234444 666544 7777776655 66667654
No 204
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=33.44 E-value=4.4e+02 Score=30.65 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040629 223 STIAFSLTCIYAVRPGLEWLIRR 245 (786)
Q Consensus 223 ~~~~~~~~~~~v~r~~~~~~~~~ 245 (786)
..+.-....+++.++++.++.++
T Consensus 466 Gii~s~~~sl~vtp~l~~~~~~~ 488 (498)
T PRK05812 466 GILTSMFTAITVTRALVNLLYGR 488 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444566778887755554
No 205
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=33.35 E-value=89 Score=33.32 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=69.2
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
++..|-.+-... ..+.+.|++.|++.++.+||.-....-... ....+.....+..+++++||.+=-|+|..-.
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e 88 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHS-----PLHLIGPLMVAAAKQAKVPVAVHFDHGMTFE 88 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccC-----ChHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 455556666655 578999999999999999998776332111 1123667778899999999999999985410
Q ss_pred C--C--CcceEEEEecccC-cChHHHHHHHHHHh---cCCCeEE
Q 040629 603 D--N--GRMQHVVMVFIGG-PDDREALALAWRMS---ANPSVQL 638 (786)
Q Consensus 603 ~--~--~~~~~I~v~f~Gg-~ddreAL~~A~rma---~~~~~~l 638 (786)
. . ......++. .+. .+++|-++.++++. +..++.+
T Consensus 89 ~i~~Al~~G~tsVm~-d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 89 KIKEALEIGFTSVMF-DGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHcCCCEEEE-cCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 0 111233332 333 35688888776654 5555553
No 206
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.95 E-value=1.7e+02 Score=32.04 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=56.7
Q ss_pred hHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCC----------cchHHH
Q 040629 510 RIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGS----------SPFREV 579 (786)
Q Consensus 510 ~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~----------~~~~~v 579 (786)
+..+.|+...+ .+..|-.+-..+ ..+.+.|++.|++.++++||.-....-..-+..+..+ ..+...
T Consensus 3 ~~k~iL~~A~~--~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (345)
T cd00946 3 DVLKLFDYAKE--NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHH 78 (345)
T ss_pred HHHHHHHHHHH--CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHH
Confidence 34444554333 344455555544 4688999999999999999987764321111110010 146777
Q ss_pred HHHHhccCCCceEEEecCCCC
Q 040629 580 NKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 580 n~~Vl~~ApCsVgIlvdrg~~ 600 (786)
.+...+++++||++=.|+|..
T Consensus 79 v~~~A~~~~VPValHLDHg~~ 99 (345)
T cd00946 79 VRSMAEHYGVPVVLHTDHCAK 99 (345)
T ss_pred HHHHHHHCCCCEEEECCCCCC
Confidence 888999999999999999854
No 207
>PRK00536 speE spermidine synthase; Provisional
Probab=32.05 E-value=1.6e+02 Score=30.94 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=43.2
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEH 685 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 685 (786)
..+||++ +||-|- ..|+.+.+|+. +++++-+- +.--+.-++++-++.... ++.
T Consensus 72 ~pk~VLI--iGGGDG----g~~REvLkh~~-~v~mVeID-------------------~~Vv~~~k~~lP~~~~~~-~Dp 124 (262)
T PRK00536 72 ELKEVLI--VDGFDL----ELAHQLFKYDT-HVDFVQAD-------------------EKILDSFISFFPHFHEVK-NNK 124 (262)
T ss_pred CCCeEEE--EcCCch----HHHHHHHCcCC-eeEEEECC-------------------HHHHHHHHHHCHHHHHhh-cCC
Confidence 4678888 687774 23344445554 77777662 233455566666665533 345
Q ss_pred ceEEEEEEeCChHHHHHHHHHhhhcCccEEEEcc
Q 040629 686 NVNYYEKVVNNREETTGALREMELQKVGLYIVGR 719 (786)
Q Consensus 686 ~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr 719 (786)
|+.... + ..+...+.||+||+=.
T Consensus 125 Rv~l~~-------~----~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 125 NFTHAK-------Q----LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CEEEee-------h----hhhccCCcCCEEEEcC
Confidence 666543 1 2222135799999873
No 208
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.68 E-value=5.6e+02 Score=25.90 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=56.5
Q ss_pred CcchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEE-ccccCCCCCCCCCCCCcchHHHHHHHhc
Q 040629 507 PSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMIL-PFHNQAGNSNGDTTGSSPFREVNKNILA 585 (786)
Q Consensus 507 ~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIl-p~h~~~~~~G~~~~~~~~~~~vn~~Vl~ 585 (786)
...++.+.+++..++ .+..+.....-+ ....++.++.+.++++|-||+ +... .. .. -+.++
T Consensus 13 ~~~~~~~~i~~~~~~-~g~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~~~----------~~----~~-~~~~~ 74 (266)
T cd06278 13 FYSELLEALSRALQA-RGYQPLLINTDD--DEDLDAALRQLLQYRVDGVIVTSGTL----------SS----EL-AEECR 74 (266)
T ss_pred hHHHHHHHHHHHHHH-CCCeEEEEcCCC--CHHHHHHHHHHHHcCCCEEEEecCCC----------CH----HH-HHHHh
Confidence 356677777776665 455544332211 224556777778899997776 3220 00 11 23455
Q ss_pred cCCCceEEEecCCCCCCCCCcceEEEEecccCcChHHHHH-HHHHHhcCCCeEEEEEE
Q 040629 586 NAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALA-LAWRMSANPSVQLTVLR 642 (786)
Q Consensus 586 ~ApCsVgIlvdrg~~~~~~~~~~~I~v~f~Gg~ddreAL~-~A~rma~~~~~~ltvv~ 642 (786)
++..|| |++|+.... .+ +.+.+ .|++++-. .+..+.++.+-++-++.
T Consensus 75 ~~~ipv-V~~~~~~~~------~~--~~~v~-~d~~~~g~~~~~~l~~~g~~~i~~i~ 122 (266)
T cd06278 75 RNGIPV-VLINRYVDG------PG--VDAVC-SDNYEAGRLAAELLLAKGCRRIAFIG 122 (266)
T ss_pred hcCCCE-EEECCccCC------CC--CCEEE-EChHHHHHHHHHHHHHCCCceEEEEc
Confidence 667776 667775331 11 12333 35554444 45556666555655544
No 209
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=31.42 E-value=3e+02 Score=26.92 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=55.0
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
|+++++.+..+...++.++....+. .+..+.++|+-.-. + ..+++-.+..+++.+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~--~~~~v~~v~vd~g~-~---------------------~~~~~~~~~~~~~~~~ 56 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK--LKIRLIAAHVDHGL-R---------------------PESDEEAEFVQQFCKK 56 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCC-C---------------------hhHHHHHHHHHHHHHH
Confidence 6899999988888888888776533 23457887765210 0 0012223344455544
Q ss_pred CCceEEEEeEEe----cC--CCChH--------HHHHHHHhhcCccEEEEcccc
Q 040629 522 STGISVHPLTAM----SP--FITMH--------EDVCNLAEDKHIAFMILPFHN 561 (786)
Q Consensus 522 ~~~v~v~~~t~v----s~--~~~~~--------~dI~~~A~e~~adlIIlp~h~ 561 (786)
-+++.+....- .+ ..++. +-+.+.|++.+++.|+.|.|.
T Consensus 57 -~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 57 -LNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred -cCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 34433322210 00 01122 466778999999999999883
No 210
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=31.34 E-value=91 Score=29.53 Aligned_cols=57 Identities=7% Similarity=0.114 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 539 MHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 539 ~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
-.+.+.++.++++++.||+|...+ +||..+......+.+.+++-++-++|| +++|.-
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~--m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLN--MDGTEGPRAELARKFAERLKKRFNLPV-VLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcC--CCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 568899999999999999999754 346554443457888999999999998 677754
No 211
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=31.27 E-value=3.1e+02 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=21.3
Q ss_pred cCcChHHHHHHHHHHhcCCCeEEEEEEe
Q 040629 616 GGPDDREALALAWRMSANPSVQLTVLRL 643 (786)
Q Consensus 616 Gg~ddreAL~~A~rma~~~~~~ltvv~~ 643 (786)
=.+.|.|++..|++|++ .+.+++++-+
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 35788999999999987 4566766665
No 212
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=31.27 E-value=3e+02 Score=27.52 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=24.1
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++++.|.||+|+--|+..|.+. +-++.-+...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~ 32 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNL 32 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 4789999999999999999983 3344444443
No 213
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=30.84 E-value=3.2e+02 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=27.6
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
..++++.|.||+||--.|.++.+..+ ++ +.|+.+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~-~~--i~vv~vD 59 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE-PM--IPVIFID 59 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC-CC--CCEEEEe
Confidence 34799999999999999999999862 32 5566664
No 214
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=30.78 E-value=90 Score=28.91 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=27.7
Q ss_pred EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCC
Q 040629 528 HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQA 563 (786)
Q Consensus 528 ~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~ 563 (786)
+-..++-|...||..|.++|++-++|++|-|.....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 567778888999999999999999999999997543
No 215
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=30.71 E-value=7.1e+02 Score=27.06 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=52.3
Q ss_pred HhhHHHHHHHhhhhcccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh---hhhhhHHHHHh
Q 040629 310 GIMLPLFFAMCGIRTNVHKVH----NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLM---NTKGILAVVVL 382 (786)
Q Consensus 310 ~l~~PlfF~~~G~~~d~~~l~----~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l---~~rG~v~l~~~ 382 (786)
..++.+.|...|+.+....+. +|...++.++.-++.=++.+++.++.+++|. .++.|+.+ .|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~--~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP--ELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHhHHheeeCCCchhHHHHH
Confidence 556667777889999887776 7888888888888888999999999887544 45555543 44555554444
Q ss_pred hcc
Q 040629 383 NLG 385 (786)
Q Consensus 383 ~~~ 385 (786)
..+
T Consensus 119 ~lA 121 (319)
T COG0385 119 YLA 121 (319)
T ss_pred HHh
Confidence 433
No 216
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=30.63 E-value=3.4e+02 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=24.8
Q ss_pred EEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 610 VVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 610 I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
|++.+.||.|+--++.++.+.... +++.+++.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~---~v~~v~vd 32 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGD---RVLAVTAT 32 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCC---cEEEEEeC
Confidence 578899999999999888776432 57777775
No 217
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.36 E-value=1.6e+02 Score=31.34 Aligned_cols=71 Identities=7% Similarity=0.093 Sum_probs=52.6
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
++..|-.+-..+ ..+.+.+++.|++.++.+||.-....-..-| ...+....+...+++++||++=-|+|..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 455556666655 4789999999999999999986653321111 1236777889999999999999999864
No 218
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=29.50 E-value=96 Score=35.00 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhhcCCCCceEEEEEEe---CChHHHHHHHHHhhhcC-ccEEEEccCCC
Q 040629 668 QVDAEFVNEFRLQTAGEHNVNYYEKVV---NNREETTGALREMELQK-VGLYIVGREVM 722 (786)
Q Consensus 668 ~~d~~~l~~~~~~~~~~~~v~~~e~~v---~~~~e~~~~i~~~~~~~-~DLiiVGr~~~ 722 (786)
..-.+.+...+.+...- .+.+....| +.+.|++++|+.+++.+ +|.+||||+|.
T Consensus 147 AairDIl~~~~rR~P~~-~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 147 AALRDILHTLSRRFPSV-EVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHHHHHhhCCCC-eEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 34556777777776543 344444444 33688999999885555 99999999953
No 219
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.32 E-value=5e+02 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=26.5
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEee
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLV 479 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlv 479 (786)
||++++.+--+...++.++........-+..++++|+-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58899988887888888877765432114567888765
No 220
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.90 E-value=1.7e+02 Score=31.15 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=52.2
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
++..|-.+-..+ ..+.+.+++.|++.++.+||.-....-..-| -..+........+++++||.+=-|+|..
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344455566555 4789999999999999999987663321111 1236777888999999999999999854
No 221
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=28.55 E-value=8e+02 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 040629 97 ALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLT 143 (786)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l 143 (786)
-+-+..|..|..++.+.+.+.+.+-..+++...+++...+.....++
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 34556777899999999999988888888877777766655555444
No 222
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=28.48 E-value=1.1e+02 Score=27.46 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCcc
Q 040629 13 TTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPS 70 (786)
Q Consensus 13 ~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~ 70 (786)
+..|.-.-..|++|++|.-++.-.+.-+-..++-..+....--.+.-.++.|++.||+
T Consensus 53 ~~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 53 TRYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred cCCCcceecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 4455556688999999864443222222112222223333344566678899999997
No 223
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=28.21 E-value=5.9e+02 Score=33.06 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040629 224 TIAFSLTCIYAVRPGLEWLIRR 245 (786)
Q Consensus 224 ~~~~~~~~~~v~r~~~~~~~~~ 245 (786)
++.-....+++.|.+..++.++
T Consensus 1043 II~SmftALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1043 IFSSMFTALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444456667766665544
No 224
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=27.91 E-value=4.5e+02 Score=29.21 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 96 MALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTA 144 (786)
Q Consensus 96 igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 144 (786)
.|+.+.++..|.+.|++.+++..++...+++. ++..+.+.-..++.+.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG-~v~q~~i~pl~~f~~~ 164 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG-FVPQYLIMPLLGFLLS 164 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh-HHHHHHHHHHHHHhhh
Confidence 67788899999999999999999888766543 3334555554554444
No 225
>PRK03612 spermidine synthase; Provisional
Probab=27.48 E-value=1e+03 Score=27.71 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHHhhccHHHHHHHHHhcCc--cCChhHHHHHHHHHHHHHHHHHHHHH
Q 040629 157 LFWGLTLTVTGFPAVTWILGELKL--LQTDIGRLATSIAMISDVCSWILVAV 206 (786)
Q Consensus 157 l~lg~~ls~Ts~~vv~~iL~el~l--l~s~~g~l~ls~a~i~D~~~~~ll~~ 206 (786)
+..+..+..+ +|.+++++.+... ..+.+|++ .+...+.-+++-++..+
T Consensus 118 ~~~~~l~G~~-~Pl~~~~~~~~~~~~~g~~~g~l-y~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 118 LLIGLLIGME-IPLLMRILQRIRDQHLGHNVATV-LAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHH-HHHHHHHHHhccccchhhhhhhh-HhHHhHHHHHHHHHHHH
Confidence 3344455555 7889998876532 34445554 23333344444444333
No 226
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=27.21 E-value=99 Score=33.30 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccC-CCCcccccccCCcCCCCccccc
Q 040629 666 QSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGRE-VMASAATADLLGWSECPEIGAI 742 (786)
Q Consensus 666 ~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG~i 742 (786)
.++.-++..+.++++ ...+.+.......|..+..+++...+||++|++-+ |--+....||.+--..| ||.|
T Consensus 18 ~~~~~~~~~~~l~~~-----g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 18 AKKLLREVEELLEEA-----GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred hhhHHHHHHHHHHhc-----CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 344444444444442 23444444544456666677764557999999998 65556677877776666 7665
No 227
>PRK14561 hypothetical protein; Provisional
Probab=27.19 E-value=3e+02 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=23.4
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
+|++.|.||.|+--.+..+.+. .++..+++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 7999999999999988877654 234555664
No 228
>PRK01821 hypothetical protein; Provisional
Probab=26.59 E-value=5.4e+02 Score=24.12 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCch---hHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHH--Hhhhhcccchhh-H
Q 040629 258 YLCFFLIGVVICSFVTEVTGTF---SIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFA--MCGIRTNVHKVH-N 331 (786)
Q Consensus 258 ~~~~il~~~l~~~~~a~~~g~~---~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~--~~G~~~d~~~l~-~ 331 (786)
.+..+++..++.-++++.+++. +++|-++.=+.+--.....+..++-.++. -=-+|+||+ .+|.-...+.+. +
T Consensus 14 ~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~~~a~~L-L~~m~LfFVPa~VGim~~~~ll~~~ 92 (133)
T PRK01821 14 AFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVKPGCSLL-IRYMALLFVPIGVGVMQYYDLLRAQ 92 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040629 332 WFLAGFVIILTCFCKILGTLLVSHSY 357 (786)
Q Consensus 332 ~~~~~~ii~~~~~~K~i~~~l~~~~~ 357 (786)
|+..++.+++..+.=++.+.....+.
T Consensus 93 ~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 93 FGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 229
>PRK09903 putative transporter YfdV; Provisional
Probab=26.53 E-value=8.2e+02 Score=26.22 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=75.2
Q ss_pred hhHHHHHHHhHhcCC--CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 279 FSIVGAFVFGIIMPD--RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH-NWFLAGFVIILTCFCKILGTLLVSH 355 (786)
Q Consensus 279 ~~~lgafvaGl~~~~--~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii~~~~~~K~i~~~l~~~ 355 (786)
++.+-+.++|+++.- -+..+.+.+-++.+. +...|+-...+|+.+....+. .+. .....+...+.-++..++...
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg-~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~ 250 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIA-KANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGM 250 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 466666677775544 344456666666666 888999999999988654443 222 122333344444556666666
Q ss_pred hcCCChHHHHHHHHH--hhhhhhHHHHHhhccccCCCCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 040629 356 SYHMPLQDRLALGVL--MNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMY 418 (786)
Q Consensus 356 ~~~~~~~~~~~lgl~--l~~rG~v~l~~~~~~~~~~~i~~~~~~~lvl~~vv~t~i~~plv~~l~ 418 (786)
.++++..+.. ...+ ..|-+....+++. +.| .+++..+..+....+.+.++-|+.-++.
T Consensus 251 ~~~l~~~~~~-v~vl~aa~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 251 ACHLNSEHLQ-MMVLAGALPPAFSGIIIAS---RFN-VYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HcCCCcHHHH-HHHHHHcccHHHHHHHHHH---HHc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777643332 2222 2343444444433 333 2455555555555666777777776654
No 230
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=26.38 E-value=2.2e+02 Score=30.42 Aligned_cols=95 Identities=9% Similarity=0.146 Sum_probs=62.6
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
++..|-.+-... ..+.+.|++.|++.++.+||.-..+.-..- ....+....+...++++.||++=-|+|..-.
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~-----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e 86 (282)
T TIGR01858 14 GGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHA-----GTEYIVALCSAASTTYNMPLALHLDHHESLD 86 (282)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhC-----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 344455566555 478999999999999999998766332111 1123677888999999999999999985410
Q ss_pred C-----CCcceEEEEecccCcCh-HHHHHH
Q 040629 603 D-----NGRMQHVVMVFIGGPDD-REALAL 626 (786)
Q Consensus 603 ~-----~~~~~~I~v~f~Gg~dd-reAL~~ 626 (786)
. ..-...|.+ +|+.-+ +|=++.
T Consensus 87 ~i~~ai~~GFtSVM~--DgS~lp~eeNi~~ 114 (282)
T TIGR01858 87 DIRQKVHAGVRSAMI--DGSHFPFAQNVKL 114 (282)
T ss_pred HHHHHHHcCCCEEee--cCCCCCHHHHHHH
Confidence 0 112345655 777533 333443
No 231
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.25 E-value=1.2e+03 Score=28.16 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=64.2
Q ss_pred hccchhhhhhccccccccccCCCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCC
Q 040629 417 MYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSK 496 (786)
Q Consensus 417 l~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~ 496 (786)
+|+.-|||.-.-...-+|.|--. -+||.-+++|+..-.++++...+.+. ..|++--|.+.+..+. +.
T Consensus 538 iyHQVRKYLL~ld~rkdhVKfWR-PQILLlV~nPrss~~Lirf~N~LKKg-----gLYilGHV~~gd~~~~-----~~-- 604 (945)
T KOG1288|consen 538 IYHQVRKYLLRLDVRKDHVKFWR-PQILLLVSNPRSSCNLIRFCNDLKKG-----GLYILGHVIVGDDFSA-----SM-- 604 (945)
T ss_pred HHHHHHHHHHhcchhhhhccccc-ceEEEEecCCcccchHHHHHHhhccc-----ceEEEEEEEecccccc-----cc--
Confidence 34444555422211123444333 36888899999999999999888643 3777755555443221 00
Q ss_pred CcccccCCCCCcchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhh-----cCccEEEEcccc
Q 040629 497 NSAYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAED-----KHIAFMILPFHN 561 (786)
Q Consensus 497 ~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e-----~~adlIIlp~h~ 561 (786)
++.++...+--.+- ....++.++.+.-..++-.+|-++-+- -+.+.+|+|||.
T Consensus 605 ---------d~l~~q~~~W~s~v---d~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 605 ---------DELQQQQRAWLSFV---DDAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred ---------chhhHHHHHHHHHH---HHhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeec
Confidence 01111111112222 122334444443224666777666554 567999999985
No 232
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.81 E-value=7.2e+02 Score=25.32 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred CcchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEE-ccccCCCCCCCCCCCCcchHHHHHHHhc
Q 040629 507 PSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMIL-PFHNQAGNSNGDTTGSSPFREVNKNILA 585 (786)
Q Consensus 507 ~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIl-p~h~~~~~~G~~~~~~~~~~~vn~~Vl~ 585 (786)
...++.+.+++..++ .+..+.....-+ ..-.++..+...++++|-||+ |.+ ......+.++
T Consensus 15 f~~~l~~gi~~~~~~-~gy~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~---------------~~~~~~~~~~ 76 (260)
T cd06304 15 FNQSAYEGLEKAEKE-LGVEVKYVESVE--DADYEPNLRQLAAQGYDLIFGVGFG---------------FMDAVEKVAK 76 (260)
T ss_pred HHHHHHHHHHHHHHh-cCceEEEEecCC--HHHHHHHHHHHHHcCCCEEEECCcc---------------hhHHHHHHHH
Confidence 356677777776665 455444432212 233456777777888996655 322 1111124454
Q ss_pred cC-CCceEEEecCCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcC
Q 040629 586 NA-PCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSAN 633 (786)
Q Consensus 586 ~A-pCsVgIlvdrg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~ 633 (786)
+. ++|| +++|+.... ..++. +... |+.++-..|..++..
T Consensus 77 ~~~~ipv-v~~~~~~~~-----~~~~~--~v~~-d~~~~~~~a~~l~~~ 116 (260)
T cd06304 77 EYPDVKF-AIIDGVVDA-----PPNVA--SYVF-REYEGSYLAGVLAAL 116 (260)
T ss_pred HCCCCEE-EEecCccCC-----CCCee--eeec-chHHHHHHHHHHHHH
Confidence 44 5776 556765321 02222 3333 777777766666654
No 233
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=25.01 E-value=9.5e+02 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=18.6
Q ss_pred hhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 040629 111 VNSIKSSSKRELNIAAAGALIPMGVGAGLFFLT 143 (786)
Q Consensus 111 ~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l 143 (786)
+.+..+..++.+. .-.+..+|++++..+...+
T Consensus 4 ~~~~~~~~~~hlm-tGvS~MlP~VvagGil~ai 35 (359)
T PRK10478 4 LVQILKNTRQHLM-TGVSHMIPFVVAGGILLAV 35 (359)
T ss_pred HHHHHHHHHHHHH-hChhHhHhHHHHHHHHHHH
Confidence 3334444555554 4467788988876554444
No 234
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=24.05 E-value=1.9e+02 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=36.3
Q ss_pred cCCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 596 DKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 596 drg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.+|.+|-+-.+..++++++.||.|+--|+.++.+. +.++.-++|.
T Consensus 166 ~~g~gGlP~g~~gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~ 210 (482)
T PRK01269 166 HEGLGGFPLGTQEDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFN 210 (482)
T ss_pred eecCCCCCccccCeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEe
Confidence 44666666677889999999999999888776553 7789999997
No 235
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=24.01 E-value=2.7e+02 Score=30.64 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=57.7
Q ss_pred chHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCC-CCCC-CC--------CCcchHH
Q 040629 509 DRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGN-SNGD-TT--------GSSPFRE 578 (786)
Q Consensus 509 ~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~-~G~~-~~--------~~~~~~~ 578 (786)
++..+.|+...+ .+..|-.+-... ..+.+.|++.|++.++.+||.-+...-.. .|.. +. +-..+..
T Consensus 7 ~~~k~~L~~A~~--~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (350)
T PRK09197 7 EDYQEMFDRAKE--NGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAK 82 (350)
T ss_pred HHHHHHHHHHHH--CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHH
Confidence 344445554333 355555666555 47899999999999999999876643221 1110 00 0011556
Q ss_pred HHHHHhccCCCceEEEecCCCC
Q 040629 579 VNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 579 vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
..+...+++++||++=.|+|..
T Consensus 83 ~v~~~A~~~~VPValHLDHg~~ 104 (350)
T PRK09197 83 HVHEVAEHYGVPVILHTDHCAK 104 (350)
T ss_pred HHHHHHHHCCCCEEEECCCCCC
Confidence 7788899999999999999955
No 236
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.82 E-value=2.6e+02 Score=29.70 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=64.1
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
.+..|-.+-..+ ..+.+.+++.|++.++.+||.-....-...| -..+....++..++++.||.+=-|+|..-.
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~ 83 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSSFE 83 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 345555566555 4789999999999999999987653221111 224777888899999999999999995410
Q ss_pred C-----CCcceEEEEecccCcC-hHHHHHHHHHH
Q 040629 603 D-----NGRMQHVVMVFIGGPD-DREALALAWRM 630 (786)
Q Consensus 603 ~-----~~~~~~I~v~f~Gg~d-dreAL~~A~rm 630 (786)
. ..-...|.+ +|+.. .+|=++..+++
T Consensus 84 ~i~~ai~~GftSVMi--D~S~l~~eeNi~~t~~v 115 (276)
T cd00947 84 LIKRAIRAGFSSVMI--DGSHLPFEENVAKTKEV 115 (276)
T ss_pred HHHHHHHhCCCEEEe--CCCCCCHHHHHHHHHHH
Confidence 0 112345555 77653 34444444433
No 237
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=23.52 E-value=9.8e+02 Score=26.07 Aligned_cols=83 Identities=17% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHH------HHHHHHHhhccC
Q 040629 37 FIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMAL------DLYIFLIGLEMD 110 (786)
Q Consensus 37 lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl------~~llF~~Gle~d 110 (786)
.+++...+++.-.+|---|...-.|-.|+++...-.+. . ..+.+ ...++.+-+.|+ .++.+-+|--+|
T Consensus 5 Mi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~--~-g~~~~---gg~l~~~~~~gi~~~l~P~LIFlGIGAmtD 78 (354)
T TIGR01109 5 MLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAG--L-GLTAE---GGILALFYKVGIGSGIAPLLIFMGIGALTD 78 (354)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccc--c-ccccC---CchHHHHHHHHHhcchHHHHHHHhccHHhh
Confidence 34444455566666766888888888888887532111 0 01111 123333333332 224445788999
Q ss_pred hhHHHhcchhhHHHH
Q 040629 111 VNSIKSSSKRELNIA 125 (786)
Q Consensus 111 ~~~l~~~~~~~~~ia 125 (786)
+.-+..+.|..+.-+
T Consensus 79 FgpllanP~~~llGa 93 (354)
T TIGR01109 79 FGPLLANPRTLLLGA 93 (354)
T ss_pred hHHHHhChHHHHHHH
Confidence 999999987544333
No 238
>PRK04148 hypothetical protein; Provisional
Probab=23.40 E-value=1.2e+02 Score=28.46 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=30.4
Q ss_pred EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCC
Q 040629 528 HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQA 563 (786)
Q Consensus 528 ~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~ 563 (786)
+-..++-|...|+..|.++|++-++|++|-|.....
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 345666688899999999999999999999998543
No 239
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=23.15 E-value=1.5e+02 Score=34.47 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=41.4
Q ss_pred HhhHHHHHHHhhhhcccchhh-HHHHHHHHH---------HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHH
Q 040629 310 GIMLPLFFAMCGIRTNVHKVH-NWFLAGFVI---------ILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAV 379 (786)
Q Consensus 310 ~l~~PlfF~~~G~~~d~~~l~-~~~~~~~ii---------~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l 379 (786)
.+++|-...-.|.+++-..+. +..-+..+. ++....|+.+. ....++++++|++++|-+.+.---+..
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 556666666788988877776 333222221 22333333333 334568899999999998776655544
No 240
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=23.01 E-value=5.5e+02 Score=26.09 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=56.3
Q ss_pred cchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEE-ccccCCCCCCCCCCCCcchHHHHHHHhcc
Q 040629 508 SDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMIL-PFHNQAGNSNGDTTGSSPFREVNKNILAN 586 (786)
Q Consensus 508 ~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIl-p~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ 586 (786)
..++.+.+++..+. .+..+.....- ...+..+++++...++++|-||+ |... ... . -+-+++
T Consensus 14 ~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~----------~~~-~----~~~~~~ 76 (264)
T cd06274 14 FARIAKRLEALARE-RGYQLLIACSD-DDPETERETVETLIARQVDALIVAGSLP----------PDD-P----YYLCQK 76 (264)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCC----------chH-H----HHHHHh
Confidence 45666666666555 44444333321 11123446777778889996665 3220 000 0 122445
Q ss_pred CCCceEEEecCCCCCCCCCcceEEEEecccCcChHHH-HHHHHHHhcCCCeEEEEEE
Q 040629 587 APCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREA-LALAWRMSANPSVQLTVLR 642 (786)
Q Consensus 587 ApCsVgIlvdrg~~~~~~~~~~~I~v~f~Gg~ddreA-L~~A~rma~~~~~~ltvv~ 642 (786)
...|| |++||.... . + .++.+. |+.++ -..|..+.++.+-++.++.
T Consensus 77 ~~ipv-V~~~~~~~~-----~-~--~~~V~~-d~~~~g~~~~~~l~~~g~~~i~~i~ 123 (264)
T cd06274 77 AGLPV-VALDRPGDP-----S-R--FPSVVS-DNRDGAAELTRELLAAPPEEVLFLG 123 (264)
T ss_pred cCCCE-EEecCccCC-----C-C--CCEEEE-ccHHHHHHHHHHHHHCCCCcEEEEe
Confidence 66675 777886431 1 1 233444 55554 5567778876555655543
No 241
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=82 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=24.4
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++.++|.||+|+..| .-|-+..|-+++++.+.
T Consensus 2 ~v~vLfSGGKDSSLa----A~iL~klgyev~LVTvn 33 (198)
T COG2117 2 DVYVLFSGGKDSSLA----ALILDKLGYEVELVTVN 33 (198)
T ss_pred ceEEEecCCCchhHH----HHHHHHhCCCcEEEEEE
Confidence 578999999999755 45555667777887776
No 242
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=22.92 E-value=7.9e+02 Score=26.07 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhcccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 040629 313 LPLFFAMCGIRTNVHKVH----NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQ 362 (786)
Q Consensus 313 ~PlfF~~~G~~~d~~~l~----~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~ 362 (786)
+.+-+...|++++...+. .+.......+.-++.-++.++..+..++.+..
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~ 67 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPE 67 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344455677777776665 22234444445566666667777777766543
No 243
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=22.68 E-value=1.8e+02 Score=31.99 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHhhHHHH-HHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 040629 297 GALLFERFADFVSGIMLPLF-FAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDR 364 (786)
Q Consensus 297 ~~~l~~~l~~~~~~l~~Plf-F~~~G~~~d~~~l~~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~ 364 (786)
.++-.+-+..++..+|.|.. |.-.|=.+.+..+..|+.+-+-+++.+..-.+..++..+.++-|.+..
T Consensus 39 p~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~ 107 (408)
T KOG2722|consen 39 PRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLR 107 (408)
T ss_pred CHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHhheecCChhhc
Confidence 33444445555668899975 778888888887778888888888888888888999999999887765
No 244
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.50 E-value=2.8e+02 Score=29.60 Aligned_cols=98 Identities=7% Similarity=0.098 Sum_probs=62.9
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS 602 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~ 602 (786)
.+..|-.+-..+ ..+.+.|++.|++.++.+|+.-..+.-.. .....+....+...++++.||++=-|+|..-.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~-----~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e 88 (286)
T PRK12738 16 NGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKH-----IALEEIYALCSAYSTTYNMPLALHLDHHESLD 88 (286)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhh-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 345555555554 57899999999999999999865422111 11223677888899999999999999985410
Q ss_pred C-----CCcceEEEEecccCcCh-HHHHHHHHH
Q 040629 603 D-----NGRMQHVVMVFIGGPDD-REALALAWR 629 (786)
Q Consensus 603 ~-----~~~~~~I~v~f~Gg~dd-reAL~~A~r 629 (786)
. ..-...|.+ +|+.-+ +|=++..++
T Consensus 89 ~i~~ai~~GFtSVM~--DgS~lp~eeNi~~T~e 119 (286)
T PRK12738 89 DIRRKVHAGVRSAMI--DGSHFPFAENVKLVKS 119 (286)
T ss_pred HHHHHHHcCCCeEee--cCCCCCHHHHHHHHHH
Confidence 0 112345555 777533 444444333
No 245
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=21.94 E-value=5.4e+02 Score=24.81 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=55.1
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHhc
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENR 521 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 521 (786)
|+++++.+..+...++.++...... .+..+.++|+-.- .. ..+++-.+.++++.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~--~~~~v~~v~id~~--~~--------------------~~~~~~~~~~~~~~~~ 56 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR--LGLRLVAVHVDHG--LR--------------------PESDEEAAFVADLCAK 56 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCcEEEEEecCC--CC--------------------chHHHHHHHHHHHHHH
Confidence 5889999988888888888877643 2456888887521 00 0012233333444444
Q ss_pred CCceEEEEeE-EecC--CCC--------hHHHHHHHHhhcCccEEEEcccc
Q 040629 522 STGISVHPLT-AMSP--FIT--------MHEDVCNLAEDKHIAFMILPFHN 561 (786)
Q Consensus 522 ~~~v~v~~~t-~vs~--~~~--------~~~dI~~~A~e~~adlIIlp~h~ 561 (786)
.+++.+... ...+ ..+ +.+...+.|++.+++.|+.|-|.
T Consensus 57 -~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 57 -LGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred -cCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 344443331 1111 111 22445578899999999999873
No 246
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.92 E-value=2.2e+02 Score=26.44 Aligned_cols=60 Identities=5% Similarity=-0.002 Sum_probs=44.8
Q ss_pred CChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCC
Q 040629 537 ITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQ 599 (786)
Q Consensus 537 ~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~ 599 (786)
....+.+.++.++++++.||+|...+ .||.........+.+.+++-++-+.|| .++|...
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~--~dG~~~~~a~~v~~f~~~L~~~~~~~v-~~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLN--MDGTEGPLTERAQKFANRLEGRFGVPV-VLWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCC--CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 34568899999999999999998765 356554444457788888877778888 5566543
No 247
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.72 E-value=1.2e+02 Score=31.62 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=27.9
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.+++++.|.||.|+--++.++.+. +.++..+++.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~ 45 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVV 45 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEec
Confidence 468999999999999999999886 4556667775
No 248
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=21.63 E-value=9.5e+02 Score=25.22 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhC
Q 040629 24 LFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLG 68 (786)
Q Consensus 24 l~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilG 68 (786)
+.+=+|+.+-...-++..++++.++++. .|..+-....|+++|
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 3444566666666777777777777775 467777777777777
No 249
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=21.55 E-value=1.1e+03 Score=25.85 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCccccccccccCCchhHHHHHHHHHH------HHHHHHHhh
Q 040629 34 QLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMAL------DLYIFLIGL 107 (786)
Q Consensus 34 ~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~fp~~~~~~l~~l~~igl------~~llF~~Gl 107 (786)
++..+++...+++.-.||---|...-.|-.|+++...-+.. ..+..........++.+-+.|+ .++.+-+|-
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~--~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGA 81 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSG--LMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGA 81 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchh--hcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhH
Confidence 45556666666777777777899999999999998543221 0000000011223333333333 234455788
Q ss_pred ccChhHHHhcchhhHH
Q 040629 108 EMDVNSIKSSSKRELN 123 (786)
Q Consensus 108 e~d~~~l~~~~~~~~~ 123 (786)
-+|+.-+..+.|..+.
T Consensus 82 mtDFgpllanP~~~ll 97 (360)
T PF03977_consen 82 MTDFGPLLANPKTLLL 97 (360)
T ss_pred HHhhHHHHhCHHHHHH
Confidence 9999999999987543
No 250
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=21.45 E-value=9e+02 Score=24.87 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHH-hhccHHHHHHHH
Q 040629 97 ALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTL-TVTGFPAVTWIL 175 (786)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~l-s~Ts~~vv~~iL 175 (786)
|-.-.-|..-+--..+.+||+++....-...+.++.+..+..++.+++. + ..+..+.+- |+| .|+...+-
T Consensus 66 gPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~-----~---~~i~~Sl~pkSvT-tpiAm~vs 136 (226)
T TIGR00659 66 GPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGL-----G---PEIIASLLPKSVT-TPIAMHVS 136 (226)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----C---HHHHHHhhhHHhh-HHHHHHHH
Confidence 3333444455557788899999887776667777777666666666642 2 223333332 333 46666766
Q ss_pred HhcCc
Q 040629 176 GELKL 180 (786)
Q Consensus 176 ~el~l 180 (786)
++++-
T Consensus 137 ~~iGG 141 (226)
T TIGR00659 137 EMIGG 141 (226)
T ss_pred HHhCC
Confidence 66653
No 251
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=21.25 E-value=5.2e+02 Score=27.76 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.9
Q ss_pred EEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 609 HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 609 ~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
++++.|.||.|+--++.++.+.. +.+++.+++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~~v~aV~vd 33 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GDRLTCVFVD 33 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CCcEEEEEec
Confidence 57899999999999999998743 3467888885
No 252
>COG3748 Predicted membrane protein [Function unknown]
Probab=20.84 E-value=7.8e+02 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=25.9
Q ss_pred HHhhHHHHHHHhhhhcccchhh--HHHHHHHHHHHHHHHH
Q 040629 309 SGIMLPLFFAMCGIRTNVHKVH--NWFLAGFVIILTCFCK 346 (786)
Q Consensus 309 ~~l~~PlfF~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K 346 (786)
+.+-+|+.|.++-=+..+..-. +|.++.++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 3677899999887766654333 7877666666665554
No 253
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=20.76 E-value=1e+03 Score=28.14 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCchhHHHHHHHhHhcCC-Cc-hhHH--HHHHHHHHHHHhhHHHHHHH
Q 040629 267 VICSFVTEVTGTFSIVGAFVFGIIMPD-RD-LGAL--LFERFADFVSGIMLPLFFAM 319 (786)
Q Consensus 267 l~~~~~a~~~g~~~~lgafvaGl~~~~-~~-~~~~--l~~~l~~~~~~l~~PlfF~~ 319 (786)
+..++++... -++++|+.++|++..- .. +.+. +-+.++.+..-++.|++-.+
T Consensus 303 ~i~g~~a~~~-~~GFlG~Ilag~lagyv~~~l~K~~~lP~~l~~l~piliiPllt~l 358 (563)
T PRK10712 303 LIGGMLAVST-GSGFIGGIIAGFLAGYVAKLISTKLKLPQSMEALKPILIIPLISSL 358 (563)
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhccCcHHHHhcCceeehhHHHHH
Confidence 3334444333 4788888888888776 33 2222 45555555545666765433
No 254
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.70 E-value=87 Score=27.79 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhhcCccEEEEccc
Q 040629 538 TMHEDVCNLAEDKHIAFMILPFH 560 (786)
Q Consensus 538 ~~~~dI~~~A~e~~adlIIlp~h 560 (786)
+=++++++.|+++++|++|+|--
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSH
T ss_pred CCHHHHHHHHHHcCCCEEEECCh
Confidence 56799999999999999999854
No 255
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=20.54 E-value=5.5e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=24.7
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
..+++++|.||-|+--|.-+ ....|++++-++|.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~l----m~krG~~V~~l~f~ 36 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWL----MMKRGCEVIALHFD 36 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHH----HHCBT-EEEEEEEE
T ss_pred CceEEEEecCCccHHHHHHH----HHHCCCEEEEEEEE
Confidence 46899999999999766433 33359999999997
No 256
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.42 E-value=3.2e+02 Score=29.22 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=51.9
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
++..|-.+-..+ ..+.+.|++.|++.++.+||.-....-..-| -..+........++++.||++=-|+|..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPV~lHLDHg~~ 86 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAG-----TEYLLAIVSAAAKQYHHPLALHLDHHEK 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344555555554 4789999999999999999987653221111 1246778889999999999999999854
No 257
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=20.40 E-value=1.2e+03 Score=25.88 Aligned_cols=253 Identities=12% Similarity=0.116 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc--ccc-----ccc-cccCC------chhHHHHHHH
Q 040629 30 LLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR--KAY-----FSK-LFPVR------SVTTLETVAY 95 (786)
Q Consensus 30 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~--~~~-----~~~-~fp~~------~~~~l~~l~~ 95 (786)
.-.-++..+++...+++.-.+|---|...-.|-.|+++...-+.. ... .+. ...+. ....++.+-+
T Consensus 20 ~~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~ 99 (399)
T TIGR03136 20 IAITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYN 99 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHH
Confidence 344566666666666777777777899988998999887542210 000 000 00000 0123443333
Q ss_pred HHHH------HHHHHHhhccChhHHHhcchhhHHHH-HH--HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhc
Q 040629 96 MALD------LYIFLIGLEMDVNSIKSSSKRELNIA-AA--GALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVT 166 (786)
Q Consensus 96 igl~------~llF~~Gle~d~~~l~~~~~~~~~ia-~~--~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~~ls~T 166 (786)
.|+. ++.+-+|--+|+.-+..+.|..+..| .. |+.+++..+ ..++. +.. ++..+|++-..-
T Consensus 100 ~gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~A----~~lGF-----~~~-eAAsIgIIGgAD 169 (399)
T TIGR03136 100 FTFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVIG----YYCGL-----TPG-EAAAVGTIGGAD 169 (399)
T ss_pred HHHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHHH----HHcCC-----CHH-HhhHHhhcccCC
Confidence 3332 23445788899999999988777632 32 233333222 22221 111 444444433222
Q ss_pred cHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040629 167 GFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRT 246 (786)
Q Consensus 167 s~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~ 246 (786)
.+..+.- ..|+.+.-+|.+++++ =.+......+-+|+++++..+.
T Consensus 170 GPTaIf~---s~kLAp~Llg~IaVAA--------------------------------YsYMaLVPiiqPpimklLttkk 214 (399)
T TIGR03136 170 GPMVLFA---SLILAKDLFVPISIIA--------------------------------YLYLSLTYAGYPYLIKLLVPKK 214 (399)
T ss_pred ccHHHHH---HHhhhhHhHHHHHHHH--------------------------------HHHHHHHhcccchHHHhhcCHH
Confidence 2111111 1122222222222110 1122333334456666553221
Q ss_pred ccCC-----CCCC-ChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHHHHHh
Q 040629 247 SKGN-----NNAY-SDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMC 320 (786)
Q Consensus 247 ~~~~-----~~~~-~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~PlfF~~~ 320 (786)
.+.. .+++ +...+.+-++....++.+.- .-.+++|.+.+|-.+.+... +++.+..+.-..++..-+.=..+
T Consensus 215 ER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~P--~a~pLig~Lm~GNllrEsGv-~rLs~taqn~l~nivTifLGl~v 291 (399)
T TIGR03136 215 YRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLLP--VASPLILSFFLGVAIKEAQI-EPYQNLLEKTLTYGSTLFLGLVL 291 (399)
T ss_pred HHcccCccCCCCCCccchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0222 22234455555555444322 34589999999999998333 55555444433344444444567
Q ss_pred hhhcccchhh
Q 040629 321 GIRTNVHKVH 330 (786)
Q Consensus 321 G~~~d~~~l~ 330 (786)
|...+-..+.
T Consensus 292 G~t~~A~~FL 301 (399)
T TIGR03136 292 GVLCEASTLL 301 (399)
T ss_pred hhhccHHhhC
Confidence 7777755554
No 258
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=20.31 E-value=4.8e+02 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred EecccCcChHHHHHHHHHHhcCCCeEEE-EEEee
Q 040629 612 MVFIGGPDDREALALAWRMSANPSVQLT-VLRLH 644 (786)
Q Consensus 612 v~f~Gg~ddreAL~~A~rma~~~~~~lt-vv~~~ 644 (786)
+.|.||.|+--|+..|.+. +-+++ ++.+.
T Consensus 2 vl~SGGkDS~~al~~a~~~----G~~v~~l~~~~ 31 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEE----GHEVRCLITVV 31 (218)
T ss_pred eeecCcHHHHHHHHHHHHc----CCEEEEEEEec
Confidence 6789999999999988882 34554 44554
Done!