Query 040629
Match_columns 786
No_of_seqs 318 out of 2096
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 3.6E-23 1.2E-27 223.8 12.3 300 88-418 58-384 (388)
2 3mt0_A Uncharacterized protein 99.8 3E-19 1E-23 190.0 23.0 262 441-762 8-277 (290)
3 3olq_A Universal stress protei 99.8 3.9E-19 1.3E-23 191.5 15.8 285 441-763 8-307 (319)
4 3loq_A Universal stress protei 99.8 2.3E-19 7.9E-24 191.2 12.3 268 441-763 23-292 (294)
5 3cis_A Uncharacterized protein 99.8 9.9E-18 3.4E-22 179.9 18.8 282 439-762 18-307 (309)
6 3ab8_A Putative uncharacterize 99.8 8.4E-18 2.9E-22 176.5 16.3 260 442-759 2-267 (268)
7 3hgm_A Universal stress protei 99.2 1.3E-11 4.6E-16 116.3 5.7 141 441-593 3-146 (147)
8 3fdx_A Putative filament prote 99.2 6E-11 2E-15 111.3 9.8 137 441-594 2-142 (143)
9 3s3t_A Nucleotide-binding prot 99.2 3.8E-11 1.3E-15 113.1 7.7 136 441-594 6-145 (146)
10 1mjh_A Protein (ATP-binding do 99.1 3.5E-10 1.2E-14 108.6 12.6 142 441-594 6-157 (162)
11 2z08_A Universal stress protei 99.1 1E-10 3.5E-15 109.0 7.8 133 441-594 3-136 (137)
12 3dlo_A Universal stress protei 99.1 1.1E-10 3.8E-15 111.6 8.1 130 440-594 24-154 (155)
13 1tq8_A Hypothetical protein RV 99.1 2.5E-10 8.6E-15 110.2 9.9 139 439-595 16-157 (163)
14 2dum_A Hypothetical protein PH 99.1 2.6E-10 9E-15 110.5 9.0 144 441-597 6-157 (170)
15 3tnj_A Universal stress protei 99.1 1.4E-10 4.7E-15 109.8 6.6 140 441-596 7-147 (150)
16 3idf_A USP-like protein; unive 99.1 1.5E-10 5.2E-15 107.9 6.6 133 442-594 3-137 (138)
17 3fg9_A Protein of universal st 99.0 1E-10 3.5E-15 111.7 5.1 138 439-594 14-155 (156)
18 1jmv_A USPA, universal stress 99.0 5.9E-10 2E-14 104.3 9.1 135 441-597 3-139 (141)
19 2gm3_A Unknown protein; AT3G01 99.0 1E-09 3.6E-14 106.8 10.9 147 441-597 6-164 (175)
20 3hgm_A Universal stress protei 98.9 6.2E-09 2.1E-13 97.8 9.3 140 607-759 2-147 (147)
21 3s3t_A Nucleotide-binding prot 98.8 8.4E-09 2.9E-13 96.9 9.8 138 606-760 4-146 (146)
22 3dlo_A Universal stress protei 98.8 1.1E-08 3.7E-13 97.7 9.3 129 606-760 23-155 (155)
23 3idf_A USP-like protein; unive 98.8 7.3E-08 2.5E-12 89.5 13.7 132 608-759 2-137 (138)
24 1q77_A Hypothetical protein AQ 98.8 2.3E-08 7.8E-13 93.0 9.9 130 441-594 5-137 (138)
25 1mjh_A Protein (ATP-binding do 98.7 4.1E-08 1.4E-12 93.9 11.5 143 606-762 4-160 (162)
26 1tq8_A Hypothetical protein RV 98.7 4.3E-08 1.5E-12 94.4 10.4 138 605-762 15-159 (163)
27 2z08_A Universal stress protei 98.7 6E-08 2.1E-12 90.1 10.7 134 607-760 2-137 (137)
28 2dum_A Hypothetical protein PH 98.7 5.7E-08 2E-12 93.8 10.8 142 606-763 4-158 (170)
29 3fdx_A Putative filament prote 98.7 6.3E-08 2.2E-12 90.4 10.7 137 608-760 2-143 (143)
30 3tnj_A Universal stress protei 98.7 6E-08 2.1E-12 91.4 10.2 140 606-762 5-148 (150)
31 3mt0_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 107.7 5.9 137 439-597 133-277 (290)
32 3fg9_A Protein of universal st 98.7 3.8E-08 1.3E-12 93.7 8.2 138 606-760 14-156 (156)
33 3olq_A Universal stress protei 98.6 3.7E-08 1.3E-12 105.3 5.9 146 440-600 156-309 (319)
34 3loq_A Universal stress protei 98.6 1.3E-07 4.4E-12 100.0 9.9 121 439-595 169-289 (294)
35 1q77_A Hypothetical protein AQ 98.5 2.4E-07 8.2E-12 86.0 8.8 126 606-739 3-135 (138)
36 1jmv_A USPA, universal stress 98.5 4.4E-07 1.5E-11 84.5 9.8 137 607-762 2-139 (141)
37 2gm3_A Unknown protein; AT3G01 98.5 1.1E-06 3.6E-11 85.3 12.2 143 606-763 4-165 (175)
38 3cis_A Uncharacterized protein 98.4 2.8E-07 9.7E-12 98.1 7.3 134 440-594 171-304 (309)
39 3ab8_A Putative uncharacterize 98.3 1.6E-06 5.5E-11 90.1 8.7 138 608-762 1-150 (268)
40 3zux_A Transporter, ASBTNM; tr 97.8 0.0043 1.5E-07 66.3 25.4 45 342-386 237-282 (332)
41 3g40_A Na-K-CL cotransporter; 96.2 0.13 4.5E-06 52.7 16.1 219 439-720 19-253 (294)
42 3zux_A Transporter, ASBTNM; tr 77.3 36 0.0012 35.6 14.7 91 284-382 27-123 (332)
43 1o97_C Electron transferring f 76.2 4.8 0.00016 41.0 7.2 85 612-720 31-121 (264)
44 1efp_B ETF, protein (electron 75.0 7.8 0.00027 39.1 8.3 94 615-733 34-141 (252)
45 1efv_B Electron transfer flavo 74.7 7.5 0.00026 39.3 8.1 96 613-733 35-144 (255)
46 3a2k_A TRNA(Ile)-lysidine synt 73.9 12 0.00042 41.3 10.4 95 607-720 18-128 (464)
47 1zun_A Sulfate adenylyltransfe 70.6 8.1 0.00028 40.6 7.5 56 608-681 47-102 (325)
48 1wy5_A TILS, hypothetical UPF0 70.6 19 0.00067 37.4 10.5 59 607-681 24-83 (317)
49 1iv0_A Hypothetical protein; r 68.3 11 0.00037 32.1 6.4 57 538-598 38-94 (98)
50 1sur_A PAPS reductase; assimil 66.0 28 0.00096 33.7 10.0 52 608-681 45-96 (215)
51 2wsi_A FAD synthetase; transfe 64.5 25 0.00085 36.4 9.7 91 608-721 54-167 (306)
52 1ni5_A Putative cell cycle pro 61.2 13 0.00045 40.6 7.2 95 607-720 13-117 (433)
53 2oq2_A Phosphoadenosine phosph 47.8 17 0.00059 36.7 4.9 56 608-682 42-97 (261)
54 2l0e_A Sodium/hydrogen exchang 46.6 5.7 0.00019 26.5 0.7 26 155-180 5-30 (33)
55 3fwk_A FMN adenylyltransferase 45.9 65 0.0022 33.3 8.9 90 608-720 59-169 (308)
56 2o8v_A Phosphoadenosine phosph 45.1 79 0.0027 31.5 9.4 33 608-644 46-78 (252)
57 2k3c_A TMIX peptide; membrane 38.5 0.61 2.1E-05 31.3 -5.1 27 267-293 4-30 (33)
58 1nu0_A Hypothetical protein YQ 37.3 30 0.001 31.3 4.3 58 538-598 40-97 (138)
59 3c6k_A Spermine synthase; sper 36.0 46 0.0016 35.5 6.1 30 690-720 264-293 (381)
60 2k4m_A TR8_protein, UPF0146 pr 30.3 78 0.0027 29.0 5.7 37 528-564 91-127 (153)
61 3gxq_A Putative regulator of t 29.5 30 0.001 24.2 2.1 27 523-553 10-36 (54)
62 4b4t_W RPN10, 26S proteasome r 26.1 1.6E+02 0.0055 29.7 7.9 36 607-644 107-145 (268)
63 4hqo_A Sporozoite surface prot 25.9 2.7E+02 0.0092 27.5 9.7 77 606-707 125-202 (266)
64 2q5c_A NTRC family transcripti 24.8 2.5E+02 0.0085 26.6 8.7 143 529-719 6-150 (196)
65 3o4f_A Spermidine synthase; am 24.7 75 0.0026 32.6 5.2 83 606-720 83-166 (294)
66 3bl5_A Queuosine biosynthesis 24.1 1.7E+02 0.0058 27.8 7.6 33 608-644 4-36 (219)
67 2c5s_A THII, probable thiamine 23.9 1.2E+02 0.0042 32.5 7.0 43 598-644 178-220 (413)
68 1vhx_A Putative holliday junct 23.6 81 0.0028 28.8 4.7 59 536-597 40-98 (150)
69 3ih5_A Electron transfer flavo 21.2 77 0.0026 30.9 4.3 26 618-643 19-44 (217)
70 3k32_A Uncharacterized protein 20.4 95 0.0032 29.7 4.7 33 608-644 7-39 (203)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=3.6e-23 Score=223.82 Aligned_cols=300 Identities=15% Similarity=0.148 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccChhHH----Hhcch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629 88 TTLETVAYMALDLYIFLIGLEMDVNSI----KSSSK--RELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL 161 (786)
Q Consensus 88 ~~l~~l~~igl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~ 161 (786)
...+.+.+-.+.+|||.+|+|+|.+.+ ++.+| .+...++.|+++|+++... +. . ... .+.....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~--~---~~~-~~~~gw~ 127 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN--Y---ADP-ITREGWA 127 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC--C---SST-THHHHTS
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hh--c---CCh-hhhhhhH
Confidence 456788899999999999999999877 55444 3788899999999988422 11 1 111 3556666
Q ss_pred HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629 162 TLTVTGFPAVTWILGELKL-LQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE 240 (786)
Q Consensus 162 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 240 (786)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|+++++... ++ .....+...+++++..
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~~~~l~~~~~~~~~~--------- 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LSMASLGVAAVAIAVL--------- 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-ccHHHHHHHHHHHHHH---------
Confidence 7778999988899998754 56667799999999999999999998853 22 2232222222222111
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C----chhHHHHHHHHHHHHHhhHHH
Q 040629 241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R----DLGALLFERFADFVSGIMLPL 315 (786)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~----~~~~~l~~~l~~~~~~l~~Pl 315 (786)
+..+|.. .++...+.++ . +.+.+.++..|+|+.+|+|++|+++|. + +..++++++++++++.+++|+
T Consensus 195 ~~l~r~~------v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPl 266 (388)
T 1zcd_A 195 AVLNLCG------ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPL 266 (388)
T ss_dssp HHHHHTT------CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhc------chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2223321 2223333333 2 244566789999999999999999998 3 467899999999999999999
Q ss_pred H-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629 316 F-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVL 382 (786)
Q Consensus 316 f-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~ 382 (786)
| |+..|+++|..... .-...+.+++..+++|++|+++.++.. |++|+|...+|++++.+++++++++
T Consensus 267 FaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia 346 (388)
T 1zcd_A 267 FAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA 346 (388)
T ss_dssp HHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred HHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence 9 99999999974322 112223555666999999966666655 9999999999999999999999999
Q ss_pred hccccCCC--CChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 040629 383 NLGWDKKV--LHDQEYAVMVIAIVIMTGGVAPIISTMY 418 (786)
Q Consensus 383 ~~~~~~~~--i~~~~~~~lvl~~vv~t~i~~plv~~l~ 418 (786)
+.+.+.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998876 3566788888888887766666665544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.83 E-value=3e-19 Score=189.97 Aligned_cols=262 Identities=13% Similarity=0.090 Sum_probs=182.9
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|++++++...+++.+..++.. .+..++++|+++ + .+ .++.++.+.+..+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~---------~~--------------~~~~l~~~~~~~~ 61 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-R---------RD--------------HSAALNDLAQELR 61 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-S---------SC--------------CHHHHHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh--cCCeEEEEEeeC-c---------HH--------------HHHHHHHHHHHHh
Confidence 58999999999999999999999865 567899999986 1 00 1222222222222
Q ss_pred cCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCC
Q 040629 521 RSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQG 600 (786)
Q Consensus 521 ~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~ 600 (786)
. .++.++.....+ .+..+.|++.|+++++|+||||+|++ ....+..+|++.+++++++||||.++-. +..
T Consensus 62 ~-~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~------~~~~~~~~gs~~~~vl~~~~~PVlvv~~-~~~ 131 (290)
T 3mt0_A 62 E-EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPD------NPLKKAILTPDDWKLLRFAPCPVLMTKT-ARP 131 (290)
T ss_dssp H-TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCS------CTTSTTSCCHHHHHHHHHCSSCEEEECC-CSC
T ss_pred h-CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccC------CchhhcccCHHHHHHHhcCCCCEEEecC-CCC
Confidence 3 567777777644 57999999999999999999999954 3334456899999999999999876532 211
Q ss_pred CCCCCcceEEEEecccCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeccCCCCcccccccccccc-CcchhhhHHH
Q 040629 601 KSDNGRMQHVVMVFIGGPD-------DREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCI-DGRQSQVDAE 672 (786)
Q Consensus 601 ~~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~ 672 (786)
...++|+++++|+++ ++.|+++|.++|+..+++++++++.+..... .. .+... .+..++..++
T Consensus 132 ----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~---~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 132 ----WTGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLS--SA---DPTFQLSETIEARYRE 202 (290)
T ss_dssp ----STTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--------------CHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccc--cc---CchhHHHHHHHHHHHH
Confidence 157899999999998 8999999999999999999999998321100 00 00000 0222334456
Q ss_pred HHHHHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCC
Q 040629 673 FVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFI 752 (786)
Q Consensus 673 ~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~ 752 (786)
.++++.+++.- ..+. .....++..+.+ ++.+++.++||++||++++ .++.+| -+|...+-+...-
T Consensus 203 ~l~~~~~~~g~-~~~~-~~v~~g~~~~~I--~~~a~~~~~dLiVmG~~g~-----~~~~~~----~~Gsv~~~vl~~~-- 267 (290)
T 3mt0_A 203 ACRTFQAEYGF-SDEQ-LHIEEGPADVLI--PRTAQKLDAVVTVIGTVAR-----TGLSGA----LIGNTAEVVLDTL-- 267 (290)
T ss_dssp HHHHHHHHHTC-CTTT-EEEEESCHHHHH--HHHHHHHTCSEEEEECCSS-----CCGGGC----CSCHHHHHHHTTC--
T ss_pred HHHHHHHHcCC-Ccce-EEEeccCHHHHH--HHHHHhcCCCEEEECCCCC-----cCCcce----ecchHHHHHHhcC--
Confidence 66677666522 1121 222346666655 5555466899999999976 455554 4899998888877
Q ss_pred CccEEEEeee
Q 040629 753 RASVLVVQHY 762 (786)
Q Consensus 753 ~~svLvvqq~ 762 (786)
+++||||..+
T Consensus 268 ~~pVLvv~~~ 277 (290)
T 3mt0_A 268 ESDVLVLKPD 277 (290)
T ss_dssp SSEEEEECCH
T ss_pred CCCEEEECCC
Confidence 8999999754
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.80 E-value=3.9e-19 Score=191.51 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=184.8
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|++++++...+++.+..++.. .+..++++|+++.......-...... ... ......++..+.++++.+
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~l~~~~~ 80 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR--NGGRIKAFLPVYDLSYDMTTLLSPDE-RNA----MRKGVINQKTAWIKQQAR 80 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH--HCCEEEEEEEECCGGGGCTTTSCHHH-HHH----HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH--cCCeEEEEEEecccchhhccccChhh-HHH----HHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988865 56789999998632110000000000 000 000001122223333322
Q ss_pred cC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 521 RS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 521 ~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
.. .+++++..+... .+..+.|++.|+++++||||||+|++ ....+..+|++.++|++++||||.|.-.+.
T Consensus 81 ~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~------~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 81 YYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQH------DKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--------CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred HHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcC------chhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 11 678888877633 48999999999999999999999944 333445689999999999999987754432
Q ss_pred CCCCCCCcceEEEEecccCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeccCCCCcccccccccccc-C---cc
Q 040629 599 QGKSDNGRMQHVVMVFIGGPD-------DREALALAWRMSANP--SVQLTVLRLHSRYNNNVKEEDIRYSKCI-D---GR 665 (786)
Q Consensus 599 ~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rma~~~--~~~ltvv~~~~~~~~~~~~~~~~~~~~~-~---~~ 665 (786)
. ...++|+++++|+++ ++.|+++|.++|+.. +++++++++.+.... ....+.+... + +.
T Consensus 153 ~-----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~ 224 (319)
T 3olq_A 153 W-----PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPI---NIAIELPDFDPNLYNNA 224 (319)
T ss_dssp C-----CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSC---SCCTTCTTCCHHHHHHH
T ss_pred c-----ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcch---hhhccCCcccHHHHHHH
Confidence 1 246899999999995 499999999999887 999999999822110 0000000000 0 12
Q ss_pred hhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhh
Q 040629 666 QSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDL 745 (786)
Q Consensus 666 ~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~ 745 (786)
.++..++.++++.+++... .+.+ ....++..+.+ ++.+++.++||++||++++ .++.+| -+|.+.+-
T Consensus 225 ~~~~~~~~l~~~~~~~~~~-~~~~-~v~~g~~~~~I--~~~a~~~~~dLiV~G~~g~-----~~~~~~----~~Gsv~~~ 291 (319)
T 3olq_A 225 LRGQHLIAMKELRQKFSIP-EEKT-HVKEGLPEQVI--PQVCEELNAGIVVLGILGR-----TGLSAA----FLGNTAEQ 291 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCC-GGGE-EEEESCHHHHH--HHHHHHTTEEEEEEECCSC-----CSTHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cccE-EEecCCcHHHH--HHHHHHhCCCEEEEeccCc-----cCCccc----cccHHHHH
Confidence 2334456677776665321 2222 22346665555 5555456899999999875 344444 47888888
Q ss_pred hhcCCCCCccEEEEeeec
Q 040629 746 LVYSDFIRASVLVVQHYP 763 (786)
Q Consensus 746 las~~~~~~svLvvqq~~ 763 (786)
+...- +++||||..+.
T Consensus 292 vl~~~--~~pVLvv~~~~ 307 (319)
T 3olq_A 292 LIDHI--KCDLLAIKPDG 307 (319)
T ss_dssp HHTTC--CSEEEEECCTT
T ss_pred HHhhC--CCCEEEECCCC
Confidence 88777 89999998764
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.79 E-value=2.3e-19 Score=191.21 Aligned_cols=268 Identities=10% Similarity=0.053 Sum_probs=175.8
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
-|||+|++++++...+++.+..++.. .+..++++|+++.+..... . ......... +......++.++.+.+..+
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 96 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTV-S--GGIDIDHYI-DEMSEKAEEVLPEVAQKIE 96 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC--------CCCTTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCcccccc-c--ccccHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998855 5788999999986542211 0 000000000 0000112333333333333
Q ss_pred cCCceEEEE-eEE-ecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 521 RSTGISVHP-LTA-MSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 521 ~~~~v~v~~-~t~-vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
. .++.++. .+. . .+..+.| .|+++++|+||||.|++ ....+..+|++.++|++++||||.|+-+..
T Consensus 97 ~-~g~~~~~~~v~~~---g~~~~~I--~a~~~~~DliV~G~~g~------~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 97 A-AGIKAEVIKPFPA---GDPVVEI--IKASENYSFIAMGSRGA------SKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp H-TTCEEEECSSCCE---ECHHHHH--HHHHTTSSEEEEECCCC------CHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred H-cCCCcceeEeecc---CChhHhe--eeccCCCCEEEEcCCCC------ccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 3 5777777 444 3 4789999 99999999999999943 223334578999999999999987653322
Q ss_pred CCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHH
Q 040629 599 QGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFR 678 (786)
Q Consensus 599 ~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 678 (786)
. .....++|+++++|+++++.|+++|.++++..+++++++++.+.. . .++.-+++.+.++
T Consensus 165 -~--~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~----------------~-~~~~l~~~~~~l~ 224 (294)
T 3loq_A 165 -V--VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG----------------D-KTADLRVMEEVIG 224 (294)
T ss_dssp -T--TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS----------------C-CHHHHHHHHHHHH
T ss_pred -c--cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCc----------------h-HHHHHHHHHHHHH
Confidence 1 113468999999999999999999999999999999999997211 1 1111222333333
Q ss_pred hhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEE
Q 040629 679 LQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLV 758 (786)
Q Consensus 679 ~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLv 758 (786)
... -.+. .+..-++..+.+ ++.+++.++||+++|++++ .++.+| -+|...+-+...- +++|||
T Consensus 225 ~~~---~~~~-~~~~~g~~~~~I--~~~a~~~~~dLlV~G~~~~-----~~~~~~----~~Gs~~~~vl~~~--~~pvLv 287 (294)
T 3loq_A 225 AEG---IEVH-VHIESGTPHKAI--LAKREEINATTIFMGSRGA-----GSVMTM----ILGSTSESVIRRS--PVPVFV 287 (294)
T ss_dssp HTT---CCEE-EEEECSCHHHHH--HHHHHHTTCSEEEEECCCC-----SCHHHH----HHHCHHHHHHHHC--SSCEEE
T ss_pred HcC---CcEE-EEEecCCHHHHH--HHHHHhcCcCEEEEeCCCC-----CCccce----eeCcHHHHHHhcC--CCCEEE
Confidence 221 1222 233334554444 5555456899999999965 334444 4788888888766 899999
Q ss_pred Eeeec
Q 040629 759 VQHYP 763 (786)
Q Consensus 759 vqq~~ 763 (786)
|.+..
T Consensus 288 v~~~~ 292 (294)
T 3loq_A 288 CKRGD 292 (294)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 97653
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.76 E-value=9.9e-18 Score=179.89 Aligned_cols=282 Identities=13% Similarity=0.116 Sum_probs=176.1
Q ss_pred CcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHH-
Q 040629 439 AELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEA- 517 (786)
Q Consensus 439 ~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~- 517 (786)
.-.|||+|+++++....+++.+..++.. .+..++++|+++......+ ......... +...+..++.++.+.+
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~l~~~~~~ 90 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAEL--RKIPLTLVHAVSPEVATWL----EVPLPPGVL-RWQQDHGRHLIDDALKV 90 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHH--HTCCEEEEEECCCCCCCTT----CCCCCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHh--cCCcEEEEEEecCcccccc----cCCCCchhh-HHHHHHHHHHHHHHHHH
Confidence 3468999999999999999998888854 4567999999973211000 000000000 0000111222222222
Q ss_pred hHhc---CCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 518 FENR---STGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 518 ~~~~---~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
+.+. ..++.++..+..+ +..+.|++.|+ ++|+||||.|++ ....+..+|++.++|++++||||.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~------~~~~~~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 91 VEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGS------GRWPGRLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCT------TCCTTCCSCHHHHHHHHHCSSCEEEE
T ss_pred HHHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCC------ccccccccCcHHHHHHHhCCCCEEEE
Confidence 2221 1267777776544 89999999996 899999999954 33344568999999999999998775
Q ss_pred ecCCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeec-cCCCCccccccccccccCcchhhhHHHH
Q 040629 595 VDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHS-RYNNNVKEEDIRYSKCIDGRQSQVDAEF 673 (786)
Q Consensus 595 vdrg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 673 (786)
-.+... ......++|+++++|+++++.|+++|.++|+..+++++++++.+ ......... ..+..++..++.
T Consensus 160 ~~~~~~-~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~ 231 (309)
T 3cis_A 160 HDEDSV-MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGI-------DWPATQSMAEQV 231 (309)
T ss_dssp CTTCCC-SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSC-------CHHHHHHHHHHH
T ss_pred cCCccc-CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcc-------cHHHHHHHHHHH
Confidence 433211 01124579999999999999999999999999999999999982 211000000 001122233344
Q ss_pred HHHHHhhcCC---CCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCC
Q 040629 674 VNEFRLQTAG---EHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSD 750 (786)
Q Consensus 674 l~~~~~~~~~---~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~ 750 (786)
+++...+... .-++.+ +...++..+.+ ++.+ + ++||++||++++ .++.+| -+|...+-+...-
T Consensus 232 l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~I--~~~a-~-~adliV~G~~~~-----~~~~~~----l~Gsv~~~vl~~~ 297 (309)
T 3cis_A 232 LAERLAGWQERYPNVAITR-VVVRDQPARQL--VQRS-E-EAQLVVVGSRGR-----GGYAGM----LVGSVGETVAQLA 297 (309)
T ss_dssp HHHHHTTHHHHCTTSCEEE-EEESSCHHHHH--HHHH-T-TCSEEEEESSCS-----SCCTTC----SSCHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCcEEE-EEEcCCHHHHH--HHhh-C-CCCEEEECCCCC-----CCcccc----ccCcHHHHHHhcC
Confidence 4444433211 112332 23334454444 5555 3 899999999975 344444 4788888888776
Q ss_pred CCCccEEEEeee
Q 040629 751 FIRASVLVVQHY 762 (786)
Q Consensus 751 ~~~~svLvvqq~ 762 (786)
+++||||..+
T Consensus 298 --~~pVlvv~~~ 307 (309)
T 3cis_A 298 --RTPVIVARES 307 (309)
T ss_dssp --SSCEEEECC-
T ss_pred --CCCEEEeCCC
Confidence 8999999753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.75 E-value=8.4e-18 Score=176.46 Aligned_cols=260 Identities=14% Similarity=0.137 Sum_probs=162.6
Q ss_pred eEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcc---c---ccCCCCCcchHHHHH
Q 040629 442 RILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSA---Y---KRVGSSPSDRIVNIF 515 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~i~~af 515 (786)
|||+|++++++...+++.+..++.. .+..++++|+++......+-........+.. . .+...+..++..+.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK--LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH--HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888854 4567999999975321100000000000000 0 000001112233333
Q ss_pred HHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEe
Q 040629 516 EAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFV 595 (786)
Q Consensus 516 ~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlv 595 (786)
.+..+. .+++++..+..+ +..+.|++. ++++|+||||.|++.. ...+..+|++.++|++++||||.|.
T Consensus 80 ~~~~~~-~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~-----~~~~~~~Gs~~~~v~~~a~~PVlvv- 147 (268)
T 3ab8_A 80 RQSALA-AGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAH-----GDGFGGLGSTADRVLRASPVPVLLA- 147 (268)
T ss_dssp HHHHHH-TTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTS-----CTTCCSCCHHHHHHHHHCSSCEEEE-
T ss_pred HHHHHh-CCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCc-----cccccccchhHHHHHHhCCCCEEEE-
Confidence 332223 567777777655 899999999 8999999999994420 3344568999999999999998664
Q ss_pred cCCCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHH
Q 040629 596 DKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVN 675 (786)
Q Consensus 596 drg~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 675 (786)
.++.. ..++|+++++|+++++.|+++|.++++..+++++++++.+.. +..++.-+++.+
T Consensus 148 ~~~~~-----~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~----------------~~~~~~l~~~~~ 206 (268)
T 3ab8_A 148 PGEPV-----ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP----------------ARAEAWALEAEA 206 (268)
T ss_dssp CSSCC-----CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH----------------HHHHHHHHHHHH
T ss_pred CCCCC-----CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH----------------HHHHHHHHHHHH
Confidence 32221 457999999999999999999999999999999999996211 011111222333
Q ss_pred HHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCcc
Q 040629 676 EFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRAS 755 (786)
Q Consensus 676 ~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~s 755 (786)
.++.. .-++.+. ..-++..+.+ ++.+ ++ +||+++|+ ++.+| -+|...+-+...- +++
T Consensus 207 ~l~~~---~~~~~~~-~~~g~~~~~i--~~~a-~~-~dliV~G~---------~~~~~----~~Gs~~~~vl~~~--~~p 263 (268)
T 3ab8_A 207 YLRDH---GVEASAL-VLGGDAADHL--LRLQ-GP-GDLLALGA---------PVRRL----VFGSTAERVIRNA--QGP 263 (268)
T ss_dssp HHHHT---TCCEEEE-EECSCHHHHH--HHHC-CT-TEEEEEEC---------CCSCC----SSCCHHHHHHHHC--SSC
T ss_pred HHHHc---CCceEEE-EeCCChHHHH--HHHH-Hh-CCEEEECC---------ccccc----EeccHHHHHHhcC--CCC
Confidence 33321 1123322 2234444433 5555 33 39999999 22232 4677777777666 778
Q ss_pred EEEE
Q 040629 756 VLVV 759 (786)
Q Consensus 756 vLvv 759 (786)
||||
T Consensus 264 vlvv 267 (268)
T 3ab8_A 264 VLTA 267 (268)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8876
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.18 E-value=1.3e-11 Score=116.30 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
-|||+|++++++...+++.+..++.. .+..++++|+++.+...................+...+..++..+.+.+..+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQL--TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHH--HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999888864 4678999999975321000000000000000000000112333333333333
Q ss_pred cCCceEE---EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEE
Q 040629 521 RSTGISV---HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGI 593 (786)
Q Consensus 521 ~~~~v~v---~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgI 593 (786)
. .++.+ +..+..+ +..+.|++.|++.++|+||||.|++ ....+..+|++.++|++++||||.|
T Consensus 81 ~-~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~------~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 E-LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGT------NGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp H-TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCT------TCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred h-cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCC------ccccceeeccHHHHHHhhCCCCEEE
Confidence 3 45555 6666655 8999999999999999999999954 3334456899999999999999865
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.18 E-value=6e-11 Score=111.33 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCc--hhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 441 LRILACVHGVGN--VLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 441 ~riLv~v~~~~~--~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
-|||+|+++++. ...+++.+..++.. .+..++++|+++............... . +...+..++..+.++++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~ 74 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYTAE---L--PGMDELREGSETQLKEI 74 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC---------------------CHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCcccccccccccch---h--hhHHHHHHHHHHHHHHH
Confidence 489999999999 99999998888854 567899999998643221110000000 0 00111234555566666
Q ss_pred HhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 ENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 ~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+.. .++.++..+..+ +..+.|++.|+++++|+||||.|+ .. ..+..+|++.++|++++||||.|+
T Consensus 75 ~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~------~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 75 AKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PD------ITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TT------CCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CC------CeeeeeccHHHHHHHhCCCCEEEe
Confidence 5542 345677777666 899999999999999999999993 21 234568999999999999998764
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.16 E-value=3.8e-11 Score=113.12 Aligned_cols=136 Identities=11% Similarity=0.140 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhh--hhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVL--IVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
-|||+|++++++...+++.+..++.. .+..++++|+++.+....... ...+.. ++..+..++.++.+.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 77 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELL------DAEAAHAKDAMRQRQQF 77 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccHHHH------HHHHHHHHHHHHHHHHH
Confidence 58999999999999999999888854 467899999998754332110 000000 00001123333333333
Q ss_pred HhcCCce-EEEEeEEecCCCChHHHHHH-HHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 ENRSTGI-SVHPLTAMSPFITMHEDVCN-LAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 ~~~~~~v-~v~~~t~vs~~~~~~~dI~~-~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+. .++ .++..+..+ +..+.|++ .|++.++|+||||.|++ ....+..+|++.++|++++||||.|+
T Consensus 78 ~~~-~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~------~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 78 VAT-TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGT------NSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HTT-SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCS------SCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHh-cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCC------CCcceEEEcchHHHHhccCCCCEEEe
Confidence 333 466 777777666 79999999 99999999999999954 33344568999999999999998764
No 10
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.12 E-value=3.5e-10 Score=108.61 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=92.3
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccC----CCchhhhhcc--cCCCcc--cccCCCCCcchHH
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRG----SASAVLIVHT--SSKNSA--YKRVGSSPSDRIV 512 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~----~~~~~~~~~~--~~~~~~--~~~~~~~~~~~i~ 512 (786)
.|||+|+++++....+++.+..++.. .+..++++|+++... .....- ... ...... ..+......++..
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLL-LGVAGLNKSVEEFENELKNKLTEEAK 82 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCcccccccccccc-ccccccccchhhhHHHHHHHHHHHHH
Confidence 58999999999999999999999865 568899999997531 000000 000 000000 0000000011222
Q ss_pred HHHHHhHhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCc
Q 040629 513 NIFEAFENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCS 590 (786)
Q Consensus 513 ~af~~~~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCs 590 (786)
+.++++.+.. .++.++..+..+ +..+.|++.|+++++|+||||.|++ ....+..+|++.++|++++|||
T Consensus 83 ~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~------~~~~~~~~GSv~~~vl~~~~~p 153 (162)
T 1mjh_A 83 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGK------TNLKEILLGSVTENVIKKSNKP 153 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCS------SCCTTCSSCHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCC------CCccceEecchHHHHHHhCCCC
Confidence 2333332211 567777777655 8999999999999999999999954 3344556999999999999999
Q ss_pred eEEE
Q 040629 591 VGIF 594 (786)
Q Consensus 591 VgIl 594 (786)
|.|+
T Consensus 154 Vlvv 157 (162)
T 1mjh_A 154 VLVV 157 (162)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.10 E-value=1e-10 Score=109.05 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
.|||+|+++++....+++.+..++.. .+..++++|+++.... .. ....... ...+..++..+.++++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~--~~---~~~~~~~----~~~~~~~~~~~~l~~~~~ 71 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVPD--YL---GEPFFEE----ALRRRLERAEGVLEEARA 71 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECC-----------------------CHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCCCc--cc---cccchHH----HHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998888854 4678999999973211 10 0000000 001112334445555544
Q ss_pred cCCce-EEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 521 RSTGI-SVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 521 ~~~~v-~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
. .++ .++..+..+ +..+.|++.|++.++|+||||.|++. ...+..+|++.++|++++||||.|+
T Consensus 72 ~-~g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 72 L-TGVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLG------ALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp H-HCCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTT------CCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred H-cCCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCc------hhhhhhhccHHHHHHhcCCCCEEEe
Confidence 3 234 444445444 89999999999999999999999543 3344568999999999999998764
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.10 E-value=1.1e-10 Score=111.63 Aligned_cols=130 Identities=10% Similarity=0.136 Sum_probs=91.6
Q ss_pred cceEEEEEcC-CCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 440 ELRILACVHG-VGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 440 e~riLv~v~~-~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
-.|||+|+++ ++....+++.+..++.. .+..++++|+++....... . ..+..++.++.+.+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~~~-----~----------~~~~~~~~l~~~~~~ 86 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRTKD-----E----------DIIEAKETLSWAVSI 86 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTSCH-----H----------HHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCcccH-----H----------HHHHHHHHHHHHHHH
Confidence 4589999999 99999999999888864 4567999999975432110 0 001123333333333
Q ss_pred HhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 ENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 ~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+. .++.++..+.+ ...+..+.|++.|++.++|+||||.|++. ...+..+|++.++|++++||||.|+
T Consensus 87 ~~~-~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 87 IRK-EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRS------PTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHH-TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEEC------TTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred HHh-cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCEEeccHHHHHHHhCCCCEEEe
Confidence 333 45555554444 22589999999999999999999999543 3344568999999999999998764
No 13
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.09 E-value=2.5e-10 Score=110.16 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=91.3
Q ss_pred CcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEE--EeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHH
Q 040629 439 AELRILACVHGVGNVLGTINLLELSNATKESPLCIFAL--HLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFE 516 (786)
Q Consensus 439 ~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~l--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 516 (786)
.-.|||+|+++++....+++.+..++. .+..++++ |+++........-.. .. ... ++..+..++.++.+.
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~-~~---~~~-~~~~~~~~~~l~~~~ 87 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILK-DE---SYK-VTGTAPIYEILHDAK 87 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC-------------------------CCTHHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccc-cH---HHH-HHHHHHHHHHHHHHH
Confidence 346899999999999999999999885 45789999 888654320110000 00 000 011222344444444
Q ss_pred HhHhcCCceE-EEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEe
Q 040629 517 AFENRSTGIS-VHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFV 595 (786)
Q Consensus 517 ~~~~~~~~v~-v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlv 595 (786)
+..+. .++. ++..+..+ +..+.|++.|++.++|+||||.|++ ....+..+|++.++|++++||||.|+-
T Consensus 88 ~~~~~-~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~------~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 88 ERAHN-AGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGL------STIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp HHHHT-TTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCC------CSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHH-cCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCC------CcccceeeccHHHHHHHhCCCCEEEEe
Confidence 33333 4666 77777655 8999999999999999999999944 333445689999999999999987753
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.06 E-value=2.6e-10 Score=110.48 Aligned_cols=144 Identities=9% Similarity=0.086 Sum_probs=91.0
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchh-hhh--cc-cCCCcccccCCCCCcchHHHHHH
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAV-LIV--HT-SSKNSAYKRVGSSPSDRIVNIFE 516 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~i~~af~ 516 (786)
-|||+|+++++....+++.+..++.. .+..++++|+++........ -.. +. ....... ......++..+.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKD--IKEKLKEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTT--SHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHH--HHHHHHHHHHHHHH
Confidence 48999999999999999999999865 57889999999743211000 000 00 0000000 00001122222333
Q ss_pred HhHhcC--CceEEEE--eEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceE
Q 040629 517 AFENRS--TGISVHP--LTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVG 592 (786)
Q Consensus 517 ~~~~~~--~~v~v~~--~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVg 592 (786)
++.+.. .++.++. .+..+ +..+.|++.|+++++|+||||.|++ ....+..+|++.++|++++||||.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~------~~~~~~~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGK------LSLSHEFLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCC------CC--TTCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCC------CccccceechHHHHHHHhCCCCEE
Confidence 332211 3455555 55544 8999999999999999999999954 333445689999999999999987
Q ss_pred EEecC
Q 040629 593 IFVDK 597 (786)
Q Consensus 593 Ilvdr 597 (786)
|+-.+
T Consensus 153 vv~~~ 157 (170)
T 2dum_A 153 IIKEV 157 (170)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 76443
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.06 E-value=1.4e-10 Score=109.84 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFEN 520 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 520 (786)
-|||+|++++++...+++.+..++.. .+..++++|+++......... ......... +......++..+.++++.+
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 81 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPY--GTAIPLDTE-TTYDAMLDVEKQKLSQIGN 81 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------C--TTCCCSSSC-CCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCcccccccc--ccccCcCHH-HHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988865 567899999997542210000 000000000 0000112344445555544
Q ss_pred cCCceE-EEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEec
Q 040629 521 RSTGIS-VHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVD 596 (786)
Q Consensus 521 ~~~~v~-v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvd 596 (786)
. .++. ++..+..+ +..+.|++.|+++++|+||||.|++ .... ..+|++.++|++++||||.|+-.
T Consensus 82 ~-~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~------~~~~-~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 82 T-LGIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGR------HGLA-LLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp H-HTCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred H-cCCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCC------CCcC-eEecchHHHHHHhCCCCEEEEeC
Confidence 4 2333 23444444 8999999999999999999999954 3334 56899999999999999877643
No 16
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.05 E-value=1.5e-10 Score=107.90 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=90.9
Q ss_pred eEEEEEcCCCchhhHHHHHhhhc-CCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCC-CCcchHHHHHHHhH
Q 040629 442 RILACVHGVGNVLGTINLLELSN-ATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGS-SPSDRIVNIFEAFE 519 (786)
Q Consensus 442 riLv~v~~~~~~~~li~L~~~~~-~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~ 519 (786)
|||+|+++++....+++.+..++ .. .+..++++|+++............... . ++.. +..++..+.+.+..
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~ 75 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDE-I----EMKEEEKAKLLTQKFSTFF 75 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcHHH-H----HHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 55 568899999998654322100000000 0 0000 11233333333333
Q ss_pred hcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 520 NRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 520 ~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
+. .++.++..+..+ +..+.|++.|+ ++|+||||.|++.. ..+.. |++.++|++++||||.|+
T Consensus 76 ~~-~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~------~~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 76 TE-KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSF------LNKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HT-TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTST------TSSCC-CCTTCHHHHHCSSCEEEE
T ss_pred HH-CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcch------HHHHh-CcHHHHHHhcCCCCEEEe
Confidence 33 567777777666 79999999999 99999999995432 23344 778899999999998764
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.04 E-value=1e-10 Score=111.65 Aligned_cols=138 Identities=10% Similarity=0.074 Sum_probs=91.6
Q ss_pred CcceEEEEEc--CCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHH
Q 040629 439 AELRILACVH--GVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFE 516 (786)
Q Consensus 439 ~e~riLv~v~--~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 516 (786)
.-.|||+|++ +++....+++.+..++.. .+..++++|+++............+. . ++..+..++.++.+.
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~----~--~~~~~~~~~~l~~~~ 85 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIFDSLTPSK----I--QAKRKHVEDVVAEYV 85 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCCCSSHHHH----H--HHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCccccccCCHHH----H--HHHHHHHHHHHHHHH
Confidence 3458999999 999999999998888855 45779999999865321100000000 0 000011233333333
Q ss_pred HhHhcCCce-EEEEeEEecCCCChHHHHHHH-HhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 517 AFENRSTGI-SVHPLTAMSPFITMHEDVCNL-AEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 517 ~~~~~~~~v-~v~~~t~vs~~~~~~~dI~~~-A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
+..+. .++ .++..+..+ .+..+.|++. |++.++|+||||.|++. .... .+|++.++|++++||||.|+
T Consensus 86 ~~~~~-~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~------~~~~-~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 86 QLAEQ-RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEF------PHSK-IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHH-HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCC------TTSS-SCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHH-cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCC------ccce-eecchHHHHHHhCCCCEEEe
Confidence 32222 355 477777762 3899999999 99999999999999543 2232 58999999999999998764
No 18
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.02 E-value=5.9e-10 Score=104.27 Aligned_cols=135 Identities=7% Similarity=0.021 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecc-cCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhH
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVEL-RGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFE 519 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 519 (786)
.|||+|+++++....+++.+..++.. .+..++++|+++. +....... .... . +......++..+.++++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~-~~~~--~----~~~~~~~~~~~~~l~~~~ 73 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGLI-DVNM--S----SMQDRISTETQKALLDLA 73 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCCE-EHHH--H----HHTTCCCCHHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhcccc-ccch--H----HHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998888854 4678999999842 21111000 0000 0 001122344555666665
Q ss_pred hcCCceEE-EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecC
Q 040629 520 NRSTGISV-HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDK 597 (786)
Q Consensus 520 ~~~~~v~v-~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdr 597 (786)
+. .++.+ +..+..+ +..+.|++.|++.++|+||||.| +.. .. + ++++.++|++++||||.|+-.+
T Consensus 74 ~~-~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~----~~--~--lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 74 ES-VDYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDF----WS--K--LMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp HH-SSSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCC----HH--H--HHHHHHHHHTTCCSEEEEEECC
T ss_pred HH-cCCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cch----hh--h--hcchHHHHHhcCCCCEEEeeCC
Confidence 54 34443 3344444 79999999999999999999998 531 21 1 6899999999999999876543
No 19
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.01 E-value=1e-09 Score=106.82 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=86.2
Q ss_pred ceEEEEEcCCC---------chhhHHHHHhhhcCCC-CCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcch
Q 040629 441 LRILACVHGVG---------NVLGTINLLELSNATK-ESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDR 510 (786)
Q Consensus 441 ~riLv~v~~~~---------~~~~li~L~~~~~~~~-~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (786)
.|||+|+++++ ....+++.+..++..+ .....++++|+++.......-.-.......... +......++
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 84 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFR-DMRQSNKAK 84 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHH-HHTTSHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHH-HHHHHHHHH
Confidence 58999999999 8899999988865332 246889999998643211000000000000000 000011112
Q ss_pred HHHHHHHhHhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCC
Q 040629 511 IVNIFEAFENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAP 588 (786)
Q Consensus 511 i~~af~~~~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~Ap 588 (786)
..+.++++.+.. .++.++..+..+ +..+.|++.|++.++||||||.|++ ....+..+|++.++|++++|
T Consensus 85 ~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~------~~~~~~~~Gsva~~vl~~a~ 155 (175)
T 2gm3_A 85 GLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGL------GRFQKVFVGTVSAFCVKHAE 155 (175)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCC------C--------CHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCC------ChhhhhhcCchHHHHHhCCC
Confidence 222333332211 467777776655 7999999999999999999999954 33344568999999999999
Q ss_pred CceEEEecC
Q 040629 589 CSVGIFVDK 597 (786)
Q Consensus 589 CsVgIlvdr 597 (786)
|||.|+..+
T Consensus 156 ~pVlvv~~~ 164 (175)
T 2gm3_A 156 CPVMTIKRN 164 (175)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEcCC
Confidence 999876543
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.85 E-value=6.2e-09 Score=97.80 Aligned_cols=140 Identities=12% Similarity=0.079 Sum_probs=89.0
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCC--CCccc-cccccccccCcchhhhHHHHHHHHHhhcCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYN--NNVKE-EDIRYSKCIDGRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 683 (786)
.+||+++++|+++++.|+++|.++|++.+++++++++.+... ..... ..........+..++..++.++++++....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999982110 00000 000000000133345556667766655432
Q ss_pred CC-ce--EEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 684 EH-NV--NYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 684 ~~-~v--~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
.+ ++ .-.+...+++.+.+ ++.+++.++||+|+|++++ .++.+| -+|...+-+.... +++||||
T Consensus 82 ~g~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliV~G~~~~-----~~~~~~----~~Gs~~~~vl~~~--~~pVlvV 147 (147)
T 3hgm_A 82 LGVPADKVRAFVKGGRPSRTI--VRFARKRECDLVVIGAQGT-----NGDKSL----LLGSVAQRVAGSA--HCPVLVV 147 (147)
T ss_dssp TTCCGGGEEEEEEESCHHHHH--HHHHHHTTCSEEEECSSCT-----TCCSCC----CCCHHHHHHHHHC--SSCEEEC
T ss_pred cCCCccceEEEEecCCHHHHH--HHHHHHhCCCEEEEeCCCC-----ccccce----eeccHHHHHHhhC--CCCEEEC
Confidence 21 12 02344456666655 5655566899999999965 333333 4788888887777 7888886
No 21
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.84 E-value=8.4e-09 Score=96.86 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=92.1
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC--cchhhhHHHHHHHHHhhcCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~ 683 (786)
..++|+++++|+++++.|+++|.++|+..+++++++++.+..... ... ......+ +..++..++.++++++....
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYH--TPA-LDPVLSELLDAEAAHAKDAMRQRQQFVAT 80 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCC--CGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc--ccc-cccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999998321100 000 0000000 23345556777777776543
Q ss_pred CC--ceEEEEEEeCChHHHHHHHH-HhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 684 EH--NVNYYEKVVNNREETTGALR-EMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 684 ~~--~v~~~e~~v~~~~e~~~~i~-~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.+ ++. .+...++..+.+ ++ .+++.++||+|+|++++ .++.+| -+|...+-+.... +++||||.
T Consensus 81 ~g~~~~~-~~~~~g~~~~~I--~~~~a~~~~~dliV~G~~~~-----~~~~~~----~~Gs~~~~vl~~~--~~pVlvV~ 146 (146)
T 3s3t_A 81 TSAPNLK-TEISYGIPKHTI--EDYAKQHPEIDLIVLGATGT-----NSPHRV----AVGSTTSYVVDHA--PCNVIVIR 146 (146)
T ss_dssp SSCCCCE-EEEEEECHHHHH--HHHHHHSTTCCEEEEESCCS-----SCTTTC----SSCHHHHHHHHHC--SSEEEEEC
T ss_pred cCCcceE-EEEecCChHHHH--HHHHHhhcCCCEEEECCCCC-----CCcceE----EEcchHHHHhccC--CCCEEEeC
Confidence 32 222 233345665555 55 55567899999999865 233333 4788888888777 88999984
No 22
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.80 E-value=1.1e-08 Score=97.66 Aligned_cols=129 Identities=9% Similarity=0.001 Sum_probs=88.8
Q ss_pred cceEEEEeccc-CcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCC
Q 040629 606 RMQHVVMVFIG-GPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 606 ~~~~I~v~f~G-g~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 684 (786)
..++|+++++| +++++.|+++|.++|+..+++++++++.+.... .. +..++..++.++++++.....
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---~~---------~~~~~~~~~~l~~~~~~~~~~ 90 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---TK---------DEDIIEAKETLSWAVSIIRKE 90 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---SC---------HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---cc---------HHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999 999999999999999999999999999832211 11 223344556666665544322
Q ss_pred C-ceEEEEEEe--CChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 685 H-NVNYYEKVV--NNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 685 ~-~v~~~e~~v--~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
+ .+.. +..+ +++.+.+ ++.+++.++||+|+|++++ .++.++ -+|...+-+.... +++||||+
T Consensus 91 g~~~~~-~~~v~~G~~~~~I--~~~a~~~~~DLIV~G~~g~-----~~~~~~----~lGSv~~~vl~~a--~~PVLvVr 155 (155)
T 3dlo_A 91 GAEGEE-HLLVRGKEPPDDI--VDFADEVDAIAIVIGIRKR-----SPTGKL----IFGSVARDVILKA--NKPVICIK 155 (155)
T ss_dssp TCCEEE-EEEESSSCHHHHH--HHHHHHTTCSEEEEECCEE-----CTTSCE----ECCHHHHHHHHHC--SSCEEEEC
T ss_pred CCCceE-EEEecCCCHHHHH--HHHHHHcCCCEEEECCCCC-----CCCCCE----EeccHHHHHHHhC--CCCEEEeC
Confidence 1 2332 2223 5555554 6666566899999999864 233332 4788888888777 88999984
No 23
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.77 E-value=7.3e-08 Score=89.45 Aligned_cols=132 Identities=13% Similarity=0.070 Sum_probs=86.0
Q ss_pred eEEEEecccCcChHHHHHHHHHHh-cCCCeEEEEEEeeccCCCCcccccccccc-ccCcchh-hhHHHHHHHHHhhcCCC
Q 040629 608 QHVVMVFIGGPDDREALALAWRMS-ANPSVQLTVLRLHSRYNNNVKEEDIRYSK-CIDGRQS-QVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma-~~~~~~ltvv~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~d~~~l~~~~~~~~~~ 684 (786)
++|+++++|+++++.|+++|.++| +..+++++++++.+.... ....+... ...+..+ +..++.++++.+.....
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFML---YGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEK 78 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCc---ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 689999999999999999999999 999999999999832211 00000000 0001222 45566777777665432
Q ss_pred CceEE-EEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEE
Q 040629 685 HNVNY-YEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVV 759 (786)
Q Consensus 685 ~~v~~-~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 759 (786)
+ +.+ .+...++..+.+ ++.+ + ++||+|+|++++ .++.+| - |...+-+.... +++||||
T Consensus 79 g-~~~~~~v~~g~~~~~I--~~~a-~-~~dliV~G~~~~-----~~~~~~----~-Gs~~~~vl~~~--~~pVlvv 137 (138)
T 3idf_A 79 G-INPFVVIKEGEPVEMV--LEEA-K-DYNLLIIGSSEN-----SFLNKI----F-ASHQDDFIQKA--PIPVLIV 137 (138)
T ss_dssp T-CCCEEEEEESCHHHHH--HHHH-T-TCSEEEEECCTT-----STTSSC----C-CCTTCHHHHHC--SSCEEEE
T ss_pred C-CCeEEEEecCChHHHH--HHHH-h-cCCEEEEeCCCc-----chHHHH----h-CcHHHHHHhcC--CCCEEEe
Confidence 2 222 333445665544 6666 4 999999999864 233333 2 77777777766 7888887
No 24
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.76 E-value=2.3e-08 Score=93.02 Aligned_cols=130 Identities=9% Similarity=-0.026 Sum_probs=82.0
Q ss_pred ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEee-cc-cCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLV-EL-RGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlv-el-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
.|||+|+++++....+++.+..++.. .+..++++|++ +. +.. +..- ...........++..+..++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLE-RANV-TFGLPFPPEIKEESKKRIERRLREVWEK 80 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHH-HHHH-HHCCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEeccccccc-cccc-ccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999854 56889999999 63 100 0000 0000000000000000112222222221
Q ss_pred -HhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 519 -ENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 519 -~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
.+. .+ .++..+.. .+..+.|++.|++.++|+||||.| |+ ++.++|++++||||.|+
T Consensus 81 ~~~~-~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~------g~---------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 81 LTGS-TE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACY------PS---------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHSC-CC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSC------CG---------GGTHHHHHHSSSEEEEC
T ss_pred hhcc-CC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCC------CC---------chHHHHHHhCCCceEee
Confidence 112 34 55555544 489999999999999999999998 33 66799999999998763
No 25
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.75 E-value=4.1e-08 Score=93.95 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=91.3
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-cc-----CCCCcccccccc-ccc----cC--cchhhhHHH
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SR-----YNNNVKEEDIRY-SKC----ID--GRQSQVDAE 672 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~-----~~~~~~~~~~~~-~~~----~~--~~~~~~d~~ 672 (786)
..++|+++++|+++++.|+++|.++|+..+++++++++. +. .......+..++ +.. .+ +..++..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999998 32 100000000000 000 00 112334456
Q ss_pred HHHHHHhhcCCCC-ceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCC
Q 040629 673 FVNEFRLQTAGEH-NVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDF 751 (786)
Q Consensus 673 ~l~~~~~~~~~~~-~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~ 751 (786)
.++++++.....+ ++.+ +...++..+.+ ++.+++.++||+|+|++++ .++.+| -+|.+.+-+....
T Consensus 84 ~l~~~~~~~~~~g~~~~~-~v~~G~~~~~I--~~~a~~~~~dlIV~G~~g~-----~~~~~~----~~GSv~~~vl~~~- 150 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKD-IIVVGIPHEEI--VKIAEDEGVDIIIMGSHGK-----TNLKEI----LLGSVTENVIKKS- 150 (162)
T ss_dssp HHHHHHHHHHHTTCEEEE-EEEEECHHHHH--HHHHHHTTCSEEEEESCCS-----SCCTTC----SSCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCceEE-EEcCCCHHHHH--HHHHHHcCCCEEEEcCCCC-----CCccce----EecchHHHHHHhC-
Confidence 6777665543222 2222 23345665555 5555566899999999975 344443 5899999888877
Q ss_pred CCccEEEEeee
Q 040629 752 IRASVLVVQHY 762 (786)
Q Consensus 752 ~~~svLvvqq~ 762 (786)
+++||||...
T Consensus 151 -~~pVlvv~~~ 160 (162)
T 1mjh_A 151 -NKPVLVVKRK 160 (162)
T ss_dssp -CSCEEEECCC
T ss_pred -CCCEEEEeCC
Confidence 8999999753
No 26
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.71 E-value=4.3e-08 Score=94.35 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=88.8
Q ss_pred CcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEE--Eeec-cCC-CCcccccccccc-ccCcchhhhHHHHHHHHHh
Q 040629 605 GRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVL--RLHS-RYN-NNVKEEDIRYSK-CIDGRQSQVDAEFVNEFRL 679 (786)
Q Consensus 605 ~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv--~~~~-~~~-~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~~~ 679 (786)
...++|+++++|++.++.|+++|.++|+ .+++++++ ++++ ... . ... ... ...+..++..++.++++++
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~ 88 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA---ADI--LKDESYKVTGTAPIYEILHDAKE 88 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-------------------------CCTHHHHHHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc---ccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999 99999999 8872 211 0 000 000 0002233445666777666
Q ss_pred hcCCCC-c-eEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEE
Q 040629 680 QTAGEH-N-VNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVL 757 (786)
Q Consensus 680 ~~~~~~-~-v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svL 757 (786)
.....+ . +.+ +...+++.+.+ ++.+++.++||+|+|++++ .++.+| -+|.+.+-+.... +++||
T Consensus 89 ~~~~~gv~~v~~-~v~~G~~~~~I--~~~a~~~~~DLIV~G~~g~-----~~~~~~----~lGSva~~vl~~a--~~PVl 154 (163)
T 1tq8_A 89 RAHNAGAKNVEE-RPIVGAPVDAL--VNLADEEKADLLVVGNVGL-----STIAGR----LLGSVPANVSRRA--KVDVL 154 (163)
T ss_dssp HHHTTTCCEEEE-EEECSSHHHHH--HHHHHHTTCSEEEEECCCC-----CSHHHH----HTBBHHHHHHHHT--TCEEE
T ss_pred HHHHcCCCeEEE-EEecCCHHHHH--HHHHHhcCCCEEEECCCCC-----Ccccce----eeccHHHHHHHhC--CCCEE
Confidence 543322 1 222 33345555544 5555567899999999975 233333 4788888888877 89999
Q ss_pred EEeee
Q 040629 758 VVQHY 762 (786)
Q Consensus 758 vvqq~ 762 (786)
||...
T Consensus 155 vV~~~ 159 (163)
T 1tq8_A 155 IVHTT 159 (163)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99754
No 27
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.70 E-value=6e-08 Score=90.06 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=88.2
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeec-cCCCCccccccccccc-cCcchhhhHHHHHHHHHhhcCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHS-RYNNNVKEEDIRYSKC-IDGRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~~~~~ 684 (786)
.++|+++++|+++++.|+++|.++|+..+++++++++.+ .... .+ ..+.. ..+..++..++.++++.++ .+-
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 75 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY---LG--EPFFEEALRRRLERAEGVLEEARAL-TGV 75 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHH-HCC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc---cc--ccchHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 469999999999999999999999999999999999983 2110 00 00000 0022344556677777664 111
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.++.+. ...++..+.+ ++.+++.++||+|+|++++ .++.++ -+|...+-+.... +++||||.
T Consensus 76 ~~~~~~-~~~g~~~~~I--~~~a~~~~~dliV~G~~~~-----~~~~~~----~~Gs~~~~vl~~~--~~pVlvv~ 137 (137)
T 2z08_A 76 PKEDAL-LLEGVPAEAI--LQAARAEKADLIVMGTRGL-----GALGSL----FLGSQSQRVVAEA--PCPVLLVR 137 (137)
T ss_dssp CGGGEE-EEESSHHHHH--HHHHHHTTCSEEEEESSCT-----TCCSCS----SSCHHHHHHHHHC--SSCEEEEC
T ss_pred CccEEE-EEecCHHHHH--HHHHHHcCCCEEEECCCCC-----chhhhh----hhccHHHHHHhcC--CCCEEEeC
Confidence 023333 3346666555 5555566899999999975 233333 4788888888777 88999983
No 28
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.70 E-value=5.7e-08 Score=93.81 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=90.9
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCccccccccc-------ccc-C--cchhhhHHHHH
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNVKEEDIRYS-------KCI-D--GRQSQVDAEFV 674 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~~~~~~~~~-------~~~-~--~~~~~~d~~~l 674 (786)
..++|+++++|+++++.|+++|.++|+..+++|+++++. +.... ....++. ... + +..++..++.+
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE---ELMDGYSFFYDNAEIELKDIKEKLKEEASRKL 80 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG---CCC------------CCTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc---ccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999998 22110 0000000 000 1 12234455666
Q ss_pred HHHHhhcCC-CCceEE-EEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCC
Q 040629 675 NEFRLQTAG-EHNVNY-YEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFI 752 (786)
Q Consensus 675 ~~~~~~~~~-~~~v~~-~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~ 752 (786)
+++.+.... .-++.. .....++..+.+ ++.+++.++||+|+|++++ .++.++ -+|...+-+....
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~g~~~~~I--~~~a~~~~~DlIV~G~~g~-----~~~~~~----~~Gsv~~~vl~~~-- 147 (170)
T 2dum_A 81 QEKAEEVKRAFRAKNVRTIIRFGIPWDEI--VKVAEEENVSLIILPSRGK-----LSLSHE----FLGSTVMRVLRKT-- 147 (170)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEECHHHHH--HHHHHHTTCSEEEEESCCC-----CC--TT----CCCHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCceeeeeEEecCChHHHH--HHHHHHcCCCEEEECCCCC-----Cccccc----eechHHHHHHHhC--
Confidence 666654321 112332 133345665555 5555566899999999975 233333 4798888888877
Q ss_pred CccEEEEeeec
Q 040629 753 RASVLVVQHYP 763 (786)
Q Consensus 753 ~~svLvvqq~~ 763 (786)
+++||||....
T Consensus 148 ~~PVlvv~~~~ 158 (170)
T 2dum_A 148 KKPVLIIKEVD 158 (170)
T ss_dssp SSCEEEECCCC
T ss_pred CCCEEEEccCC
Confidence 89999998543
No 29
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.70 E-value=6.3e-08 Score=90.43 Aligned_cols=137 Identities=10% Similarity=0.115 Sum_probs=83.5
Q ss_pred eEEEEecccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccC--cchhhhHHHHHHHHHhhcCC
Q 040629 608 QHVVMVFIGGPD--DREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 608 ~~I~v~f~Gg~d--dreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~ 683 (786)
++|+++++|+++ ++.|+++|.++|+..+++++++++.+...... ..........+ +...+...+.++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYA-SLGMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccc-cccccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999 99999999999999999999999983211000 00000000000 11222233334444443321
Q ss_pred CC-ceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 684 EH-NVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 684 ~~-~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.+ ++. .+...++..+.+ ++.+++.++||+|+|+++ .++.+| -+|...+-+.... +++||||.
T Consensus 81 ~~~~v~-~~~~~g~~~~~I--~~~a~~~~~dliV~G~~~------~~~~~~----~~Gs~~~~v~~~~--~~pVlvv~ 143 (143)
T 3fdx_A 81 PEDRMH-FHVAEGSPKDKI--LALAKSLPADLVIIASHR------PDITTY----LLGSNAAAVVRHA--ECSVLVVR 143 (143)
T ss_dssp CGGGEE-EEEEESCHHHHH--HHHHHHTTCSEEEEESSC------TTCCSC----SSCHHHHHHHHHC--SSEEEEEC
T ss_pred CCCceE-EEEEecChHHHH--HHHHHHhCCCEEEEeCCC------CCCeee----eeccHHHHHHHhC--CCCEEEeC
Confidence 11 222 233446666655 555556689999999983 223333 5788888888877 88999983
No 30
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.68 E-value=6e-08 Score=91.45 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=88.3
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-ccCCCCccccccccccc-cC--cchhhhHHHHHHHHHhhc
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SRYNNNVKEEDIRYSKC-ID--GRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~d~~~l~~~~~~~ 681 (786)
..++|+++++|+++++.|+++|.++|+..+++++++++. +.......... ..... .+ +..++..++.++++.++.
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGT-AIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTT-CCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccccccc-ccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367999999999999999999999999999999999998 22110000000 00000 00 233455567777777665
Q ss_pred CCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEee
Q 040629 682 AGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQH 761 (786)
Q Consensus 682 ~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 761 (786)
.- ..+. .+...++..+.+ ++.+++.++||+|+|++++ .++. | -+|...+-+.... +++||||..
T Consensus 84 ~~-~~~~-~~~~~g~~~~~I--~~~a~~~~~dliV~G~~~~-----~~~~-~----~~Gs~~~~vl~~~--~~pVlvv~~ 147 (150)
T 3tnj_A 84 GI-DPAH-RWLVWGEPREEI--IRIAEQENVDLIVVGSHGR-----HGLA-L----LLGSTANSVLHYA--KCDVLAVRL 147 (150)
T ss_dssp TC-CGGG-EEEEESCHHHHH--HHHHHHTTCSEEEEEEC------------------CCCHHHHHHHHC--SSEEEEEEC
T ss_pred CC-Ccce-EEEecCCHHHHH--HHHHHHcCCCEEEEecCCC-----CCcC-e----EecchHHHHHHhC--CCCEEEEeC
Confidence 22 2122 233446666655 5655566899999999965 2322 2 5788888888877 899999975
Q ss_pred e
Q 040629 762 Y 762 (786)
Q Consensus 762 ~ 762 (786)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.68 E-value=1.3e-08 Score=107.68 Aligned_cols=137 Identities=12% Similarity=0.018 Sum_probs=90.2
Q ss_pred CcceEEEEEcCCCc-------hhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchH
Q 040629 439 AELRILACVHGVGN-------VLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRI 511 (786)
Q Consensus 439 ~e~riLv~v~~~~~-------~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 511 (786)
..-|||+|+++++. ...+++.+..++.. .+..++++|+++....... .+.. .. .....++.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~~~----~~----~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISAHPSPMLSSA--DPTF----QL----SETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEEEC-----------CH----HH----HHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEEecCcccccc--Cchh----HH----HHHHHHHH
Confidence 34689999999998 78889888888754 4678999999975432111 0000 00 00112233
Q ss_pred HHHHHHhHhcCCceE-EEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCc
Q 040629 512 VNIFEAFENRSTGIS-VHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCS 590 (786)
Q Consensus 512 ~~af~~~~~~~~~v~-v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCs 590 (786)
.+.++++.+. .++. ++..+..+ +..+.|++.|+++++|+||||.|++ ....+..+|++.++|++++|||
T Consensus 201 ~~~l~~~~~~-~g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~------~~~~~~~~Gsv~~~vl~~~~~p 270 (290)
T 3mt0_A 201 REACRTFQAE-YGFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVAR------TGLSGALIGNTAEVVLDTLESD 270 (290)
T ss_dssp HHHHHHHHHH-HTCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSS------CCGGGCCSCHHHHHHHTTCSSE
T ss_pred HHHHHHHHHH-cCCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCC------cCCcceecchHHHHHHhcCCCC
Confidence 3444555443 2332 23334444 8999999999999999999999954 3334456999999999999999
Q ss_pred eEEEecC
Q 040629 591 VGIFVDK 597 (786)
Q Consensus 591 VgIlvdr 597 (786)
|.|+..+
T Consensus 271 VLvv~~~ 277 (290)
T 3mt0_A 271 VLVLKPD 277 (290)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9876443
No 32
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.66 E-value=3.8e-08 Score=93.65 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=89.5
Q ss_pred cceEEEEecc--cCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCC
Q 040629 606 RMQHVVMVFI--GGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAG 683 (786)
Q Consensus 606 ~~~~I~v~f~--Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 683 (786)
..++|+++++ |+++++.|+++|.++|+..+++++++++.+.... ...........+..++..++.+++++++...
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDI---NIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCT---TCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCc---cccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999 9999999999999999999999999999832110 0000000000023344556667776655432
Q ss_pred CCc-eEEEEEEe-CChHHHHHHHHH-hhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEe
Q 040629 684 EHN-VNYYEKVV-NNREETTGALRE-MELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQ 760 (786)
Q Consensus 684 ~~~-v~~~e~~v-~~~~e~~~~i~~-~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 760 (786)
.+- ....+... +++.+.+ ++. +++.++||+|+|++++ .++ +. -+|...+-+.... +++||||.
T Consensus 91 ~g~~~~~~~v~~~g~~~~~I--~~~~a~~~~~DlIV~G~~g~-----~~~----~~-~~Gs~~~~vl~~a--~~PVlvV~ 156 (156)
T 3fg9_A 91 RGVNQVEPLVYEGGDVDDVI--LEQVIPEFKPDLLVTGADTE-----FPH----SK-IAGAIGPRLARKA--PISVIVVR 156 (156)
T ss_dssp HTCSSEEEEEEECSCHHHHH--HHTHHHHHCCSEEEEETTCC-----CTT----SS-SCSCHHHHHHHHC--SSEEEEEC
T ss_pred cCCCceEEEEEeCCCHHHHH--HHHHHHhcCCCEEEECCCCC-----Ccc----ce-eecchHHHHHHhC--CCCEEEeC
Confidence 221 12233334 5666555 665 5567899999999975 232 12 4899888888877 89999984
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.57 E-value=3.7e-08 Score=105.31 Aligned_cols=146 Identities=8% Similarity=0.055 Sum_probs=92.8
Q ss_pred cceEEEEEcCCCc-------hhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHH
Q 040629 440 ELRILACVHGVGN-------VLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIV 512 (786)
Q Consensus 440 e~riLv~v~~~~~-------~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 512 (786)
..|||+|+++++. ...+++.+..++.....+..++++|+.+........ ........ +...+..++..
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~ 230 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAI---ELPDFDPN--LYNNALRGQHL 230 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCT---TCTTCCHH--HHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhc---cCCcccHH--HHHHHHHHHHH
Confidence 4689999999884 477777777766442114679999999865432110 00000000 00001123344
Q ss_pred HHHHHhHhcCCce-EEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCce
Q 040629 513 NIFEAFENRSTGI-SVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSV 591 (786)
Q Consensus 513 ~af~~~~~~~~~v-~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsV 591 (786)
+.++++.+. .++ .++..+..+ +..+.|++.|++.++||||||.|++ ....+..+|++.++|++++||||
T Consensus 231 ~~l~~~~~~-~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~------~~~~~~~~Gsv~~~vl~~~~~pV 300 (319)
T 3olq_A 231 IAMKELRQK-FSIPEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGR------TGLSAAFLGNTAEQLIDHIKCDL 300 (319)
T ss_dssp HHHHHHHHH-TTCCGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSC------CSTHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHH-hCCCcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCc------cCCccccccHHHHHHHhhCCCCE
Confidence 455555554 222 223334333 7899999999999999999999954 33344569999999999999999
Q ss_pred EEEecCCCC
Q 040629 592 GIFVDKGQG 600 (786)
Q Consensus 592 gIlvdrg~~ 600 (786)
.|+..+|+.
T Consensus 301 Lvv~~~~~~ 309 (319)
T 3olq_A 301 LAIKPDGFT 309 (319)
T ss_dssp EEECCTTCC
T ss_pred EEECCCCCC
Confidence 888666643
No 34
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.57 E-value=1.3e-07 Score=100.03 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=90.5
Q ss_pred CcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHh
Q 040629 439 AELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAF 518 (786)
Q Consensus 439 ~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 518 (786)
..-||++|+++++....+++.+..++.. .+..++++|+.+... .++..+.+.++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~------------------------~~~~l~~~~~~ 222 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD------------------------KTADLRVMEEV 222 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC------------------------CHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch------------------------HHHHHHHHHHH
Confidence 3468999999999999999988888754 456799999986422 12233333333
Q ss_pred HhcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEe
Q 040629 519 ENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFV 595 (786)
Q Consensus 519 ~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlv 595 (786)
.+. .++.++..+.-+ +..+.|++.|++.++||||||.+++ ....+..+|++.++|++++||||.|+-
T Consensus 223 l~~-~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~------~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 223 IGA-EGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGA------GSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHH-TTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCC------SCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHH-cCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCC------CCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 333 456666666544 8999999999999999999999954 333445689999999999999987763
No 35
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.50 E-value=2.4e-07 Score=85.96 Aligned_cols=126 Identities=10% Similarity=0.014 Sum_probs=76.9
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee-cc-C-CCCccccccccccccC--cchhhhHHHHHHHHHhh
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH-SR-Y-NNNVKEEDIRYSKCID--GRQSQVDAEFVNEFRLQ 680 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~-~~-~-~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~~ 680 (786)
..++|+++++|.++++.|+++|.++|+..+++++++++. +. . ... ....+.+...+ +..++..++.++++ ++
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERA--NVTFGLPFPPEIKEESKKRIERRLREV-WE 79 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHH--HHHHCCCCCTHHHHHHHHHHHHHHHHH-HH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccccccccc--ccccCCCCChHHHHHHHHHHHHHHHHH-HH
Confidence 467999999999999999999999999999999999997 42 1 000 00000000000 12233445666666 44
Q ss_pred --cCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCcc
Q 040629 681 --TAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEI 739 (786)
Q Consensus 681 --~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peL 739 (786)
....+++.+. ...++..+.+ ++.+++.++||+|+|++|+ +.++.+...+.||.|
T Consensus 80 ~~~~~~~~~~~~-~~~g~~~~~I--~~~a~~~~~dliV~G~~g~--sv~~~vl~~a~~PVl 135 (138)
T 1q77_A 80 KLTGSTEIPGVE-YRIGPLSEEV--KKFVEGKGYELVVWACYPS--AYLCKVIDGLNLASL 135 (138)
T ss_dssp HHHSCCCCCCEE-EECSCHHHHH--HHHHTTSCCSEEEECSCCG--GGTHHHHHHSSSEEE
T ss_pred HhhccCCcceEE-EEcCCHHHHH--HHHHHhcCCCEEEEeCCCC--chHHHHHHhCCCceE
Confidence 1221233333 3345665554 6666556899999999975 334444445555543
No 36
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.48 E-value=4.4e-07 Score=84.46 Aligned_cols=137 Identities=11% Similarity=0.081 Sum_probs=86.8
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeecc-CCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSR-YNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEH 685 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 685 (786)
.++|+++++|+++++.|+++|.++|+..+++++++++.++ ............. ...+..++..++.++++.++..-
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-- 78 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMS-SMQDRISTETQKALLDLAESVDY-- 78 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHH-HHTTCCCCHHHHHHHHHHHHSSS--
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchH-HHHHHHHHHHHHHHHHHHHHcCC--
Confidence 4699999999999999999999999999999999999832 1100000000000 00012234456667777665421
Q ss_pred ceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCccEEEEeee
Q 040629 686 NVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHY 762 (786)
Q Consensus 686 ~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq~ 762 (786)
.+.......++..+.+ ++.+++.++||+|+|++ +. ++. .+|...+-+.... +++||||...
T Consensus 79 ~~~~~~~~~g~~~~~I--~~~a~~~~~dliV~G~~-~~-----~~~------~lgs~~~~vl~~~--~~pVlvv~~~ 139 (141)
T 1jmv_A 79 PISEKLSGSGDLGQVL--SDAIEQYDVDLLVTGHH-QD-----FWS------KLMSSTRQVMNTI--KIDMLVVPLR 139 (141)
T ss_dssp CCCCEEEEEECHHHHH--HHHHHHTTCCEEEEEEC-CC-----CHH------HHHHHHHHHHTTC--CSEEEEEECC
T ss_pred CceEEEEecCCHHHHH--HHHHHhcCCCEEEEeCC-Cc-----hhh------hhcchHHHHHhcC--CCCEEEeeCC
Confidence 1212233346666655 55555678999999998 51 111 1577777777766 8999999753
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.45 E-value=1.1e-06 Score=85.29 Aligned_cols=143 Identities=9% Similarity=0.112 Sum_probs=83.5
Q ss_pred cceEEEEecccCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEee-ccCCCCccccccc-ccc--cc--Ccchh
Q 040629 606 RMQHVVMVFIGGP---------DDREALALAWRMS-AN--PSVQLTVLRLH-SRYNNNVKEEDIR-YSK--CI--DGRQS 667 (786)
Q Consensus 606 ~~~~I~v~f~Gg~---------ddreAL~~A~rma-~~--~~~~ltvv~~~-~~~~~~~~~~~~~-~~~--~~--~~~~~ 667 (786)
..++|+++++|++ .++.|+++|.+++ +. .+++++++++. +.... ....... .+. .. .+..+
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG-FDDVDSIYASPEDFRDMRQSNK 82 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------CCCCSHHHHHHHTTSHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc-ccccccccCCHHHHHHHHHHHH
Confidence 4689999999999 8999999999986 54 69999999998 22110 0000000 000 00 01122
Q ss_pred hhHHHHHHHHHhhcCCCCceEEE-EEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhh
Q 040629 668 QVDAEFVNEFRLQTAGEHNVNYY-EKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLL 746 (786)
Q Consensus 668 ~~d~~~l~~~~~~~~~~~~v~~~-e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~l 746 (786)
+..++.++++.+..... .+.+. +...++..+.+ ++.+++.++||+|||++++ .++.+| -+|.+.+-+
T Consensus 83 ~~~~~~l~~~~~~~~~~-g~~~~~~v~~G~~~~~I--~~~a~~~~~DLIVmG~~g~-----~~~~~~----~~Gsva~~v 150 (175)
T 2gm3_A 83 AKGLHLLEFFVNKCHEI-GVGCEAWIKTGDPKDVI--CQEVKRVRPDFLVVGSRGL-----GRFQKV----FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHH-TCEEEEEEEESCHHHHH--HHHHHHHCCSEEEEEECCC-----C------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CCceEEEEecCCHHHHH--HHHHHHhCCCEEEEeCCCC-----Chhhhh----hcCchHHHH
Confidence 33456677766543221 12222 23345555544 5555456899999999975 334343 478888888
Q ss_pred hcCCCCCccEEEEeeec
Q 040629 747 VYSDFIRASVLVVQHYP 763 (786)
Q Consensus 747 as~~~~~~svLvvqq~~ 763 (786)
.... +++||||....
T Consensus 151 l~~a--~~pVlvv~~~~ 165 (175)
T 2gm3_A 151 VKHA--ECPVMTIKRNA 165 (175)
T ss_dssp HHHC--SSCEEEEECCG
T ss_pred HhCC--CCCEEEEcCCc
Confidence 8877 89999998654
No 38
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.40 E-value=2.8e-07 Score=98.13 Aligned_cols=134 Identities=9% Similarity=0.063 Sum_probs=87.7
Q ss_pred cceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCCcchHHHHHHHhH
Q 040629 440 ELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFE 519 (786)
Q Consensus 440 e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 519 (786)
.-+|++|+++++....+++.+..++.. ....++++|+.+..... . . .... .. +......+.+.+.++.+.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~-~----~-~~~~-~~-~~~~~~~~~l~~~~~~~~ 240 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVS-E----W-PGID-WP-ATQSMAEQVLAERLAGWQ 240 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCT-T----C-SSCC-HH-HHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEEeeccccc-C----C-Cccc-HH-HHHHHHHHHHHHHHHHHH
Confidence 358999999999999999988888754 45679999998743211 0 0 0000 00 000000111222233332
Q ss_pred hcCCceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEE
Q 040629 520 NRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIF 594 (786)
Q Consensus 520 ~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIl 594 (786)
+...++.++..+..+ +..+.|++.|+ ++|+||||.|++. ...+..+|++.++|++++||||.|+
T Consensus 241 ~~~~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~------~~~~~l~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 241 ERYPNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRG------GYAGMLVGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp HHCTTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSS------CCTTCSSCHHHHHHHHHCSSCEEEE
T ss_pred hhCCCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCC------CccccccCcHHHHHHhcCCCCEEEe
Confidence 221356677666544 89999999997 8999999999553 3344568999999999999998775
No 39
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.26 E-value=1.6e-06 Score=90.10 Aligned_cols=138 Identities=18% Similarity=0.140 Sum_probs=86.2
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeec-cCCCCccccccccccccC----------cchhhhHHHHHHH
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHS-RYNNNVKEEDIRYSKCID----------GRQSQVDAEFVNE 676 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~l~~ 676 (786)
++|+++++|++.++.|+++|.++|++.+++++++++.+ .... . ....+.....+ +..++..++.+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLAR-I-PELLDFGALTVPVPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHT-H-HHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcc-c-ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999982 1100 0 00000000000 1112334566666
Q ss_pred HHhhcCCCC-ceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccCCCCcccccccCCcCCCCccccchhhhhcCCCCCcc
Q 040629 677 FRLQTAGEH-NVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRAS 755 (786)
Q Consensus 677 ~~~~~~~~~-~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~s 755 (786)
+++.....+ .+.+ +...++..+.+ .+. +.++||+|+|++++.. ++.++ -+|...+-++... +++
T Consensus 79 ~~~~~~~~g~~~~~-~~~~g~~~~~I---~~~-~~~~dliV~G~~g~~~----~~~~~----~~Gs~~~~v~~~a--~~P 143 (268)
T 3ab8_A 79 VRQSALAAGVAVEA-VLEEGVPHEAI---LRR-ARAADLLVLGRSGEAH----GDGFG----GLGSTADRVLRAS--PVP 143 (268)
T ss_dssp HHHHHHHTTCCEEE-EEEEECHHHHH---HHH-HTTCSEEEEESSCTTS----CTTCC----SCCHHHHHHHHHC--SSC
T ss_pred HHHHHHhCCCCeEE-EEecCCHHHHH---Hhh-ccCCCEEEEeccCCCc----ccccc----ccchhHHHHHHhC--CCC
Confidence 665432221 2322 22345555444 333 6789999999997510 33333 4798888888777 899
Q ss_pred EEEEeee
Q 040629 756 VLVVQHY 762 (786)
Q Consensus 756 vLvvqq~ 762 (786)
||||...
T Consensus 144 Vlvv~~~ 150 (268)
T 3ab8_A 144 VLLAPGE 150 (268)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 9999854
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.83 E-value=0.0043 Score=66.28 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh-hhHHHHHhhccc
Q 040629 342 TCFCKILGTLLVSHSYHMPLQDRLALGVLMNTK-GILAVVVLNLGW 386 (786)
Q Consensus 342 ~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~r-G~v~l~~~~~~~ 386 (786)
..+.-+..++..++.+|.+.+|+..+++-.+.| ....+.++....
T Consensus 237 ~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 237 HNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 334455667788889999999999999844444 556666666554
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.16 E-value=0.13 Score=52.69 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=140.0
Q ss_pred CcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCCCC-cchHHHHHHH
Q 040629 439 AELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSP-SDRIVNIFEA 517 (786)
Q Consensus 439 ~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~af~~ 517 (786)
-.-++||+...|.....++.++..+... ...+.+.++..-..+ +. .++ .+++++
T Consensus 19 WrP~iLV~sg~p~~~~~li~la~~lt~~---~G~ltv~~i~p~~~~---------------------~~l~~q-l~~l~~ 73 (294)
T 3g40_A 19 WKANLLVPVEDPRELMGTFDFLRDITYP---KGSVKLLGLAGNTDK---------------------ENLLSQ-LPSISE 73 (294)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHTT---TCEEEEEECC---CT---------------------TCHHHH-HHHHHH
T ss_pred CCCcEEEecCCchhhhhHHHHHHHhccC---ceeEEEEEEccCCCc---------------------cHHHHH-HHHHHH
Confidence 3458999999999999999999999866 356888888632111 11 122 366677
Q ss_pred hHhcCCceEEEEeEEecCCCChHHHHHHHHhhc-----CccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceE
Q 040629 518 FENRSTGISVHPLTAMSPFITMHEDVCNLAEDK-----HIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVG 592 (786)
Q Consensus 518 ~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~-----~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVg 592 (786)
|-++ .++..-..+..+ .+.++++....+.. +.+.|+|||..++. ....+..+.++.. ++--.|.
T Consensus 74 ~l~~-r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~~-~~~~nVl 142 (294)
T 3g40_A 74 GFQE-EGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKAS-MYRMGVL 142 (294)
T ss_dssp HHHH-TTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHh-CCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHHH-HhCceEE
Confidence 7665 676555444444 57889998888875 45999999975431 2224777776654 4477777
Q ss_pred EEecCCCCCCCCCcceEEEEeccc--------C--cChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCcccccccccccc
Q 040629 593 IFVDKGQGKSDNGRMQHVVMVFIG--------G--PDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCI 662 (786)
Q Consensus 593 Ilvdrg~~~~~~~~~~~I~v~f~G--------g--~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~ 662 (786)
||-+....+ ....++|=+=.-| | .+-..++-+|-.+.++.++++.++.++++
T Consensus 143 il~~~~~~~--fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d---------------- 204 (294)
T 3g40_A 143 LFSKHPQAG--LGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT---------------- 204 (294)
T ss_dssp EEECCTTTT--TTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS----------------
T ss_pred EEecCCccC--CCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC----------------
Confidence 775432111 1223556554222 2 35577999999999999999999999843
Q ss_pred CcchhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccC
Q 040629 663 DGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGRE 720 (786)
Q Consensus 663 ~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~ 720 (786)
+.+++..+.+++++.+...-. ...+ ++. . +-.+++++. .+.||+++|-.
T Consensus 205 -e~a~~~a~~~l~~Lv~~~Ri~-a~~~--vv~-~--~F~~il~~s--~~ADL~flGl~ 253 (294)
T 3g40_A 205 -AIQAQAAENFLQSLAELARIP-NVKM--QVL-R--ENPIKSSKL--PFASLHIFSLD 253 (294)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCC-SCEE--EEE-S--SCTTTSSSC--CCCSEEEEECC
T ss_pred -HHHHHHHHHHHHHHHHHhcCC-ceEE--Eec-C--chHHHHhhC--cCCCEEEEcCC
Confidence 456677888899888765432 2222 222 2 223345654 56999999996
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=77.34 E-value=36 Score=35.63 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=56.6
Q ss_pred HHHHhHhcCC-CchhHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040629 284 AFVFGIIMPD-RDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVH----NWFLAGFVIILTCFCKILGTLLVSHSYH 358 (786)
Q Consensus 284 afvaGl~~~~-~~~~~~l~~~l~~~~~~l~~PlfF~~~G~~~d~~~l~----~~~~~~~ii~~~~~~K~i~~~l~~~~~~ 358 (786)
+.++|..+|. ... ++... ...+++.+...|++++...+. ++.......+.-++..++.++..++.++
T Consensus 27 ~~~lg~~~P~~~~~-------~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~ 98 (332)
T 3zux_A 27 FAAAAFFAPDTFKW-------AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN 98 (332)
T ss_dssp HHHHHHHCGGGTGG-------GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcchhhhh-------hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467777776 221 22333 456677888899999988886 4555556666677788888888888887
Q ss_pred CChHHHHHHHHHh-hhhhhHHHHHh
Q 040629 359 MPLQDRLALGVLM-NTKGILAVVVL 382 (786)
Q Consensus 359 ~~~~~~~~lgl~l-~~rG~v~l~~~ 382 (786)
.+......+-+.. .|-|..+.++.
T Consensus 99 l~~~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 99 LPAEIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp CCHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred CChHHHHHHHHHhcCCchhHHHHHH
Confidence 7654433333322 33344444433
No 43
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=76.15 E-value=4.8 Score=41.02 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred EecccCcChHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEE
Q 040629 612 MVFIGGPDDREALALAWRMSANPSV--QLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNY 689 (786)
Q Consensus 612 v~f~Gg~ddreAL~~A~rma~~~~~--~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~ 689 (786)
++..=.|.|.+|++.|.|+++..+. +++++.+=+. . .++.+++.... +-+++..
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~-----------------~-----~~~~lr~ala~--GaD~vi~ 86 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD-----------------R-----VDESLRKCLAK--GADRAVR 86 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG-----------------G-----GHHHHHHHHHT--TCSEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch-----------------h-----HHHHHHHHHhc--CCCEEEE
Confidence 3444468999999999999986565 8888877210 0 12233333221 2234444
Q ss_pred EEEEe---CChHHHHHHHHHh-hhcCccEEEEccC
Q 040629 690 YEKVV---NNREETTGALREM-ELQKVGLYIVGRE 720 (786)
Q Consensus 690 ~e~~v---~~~~e~~~~i~~~-~~~~~DLiiVGr~ 720 (786)
.+--- -+...+..++.++ ++.+||+++.|++
T Consensus 87 v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~ 121 (264)
T 1o97_C 87 VWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ 121 (264)
T ss_dssp ECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESC
T ss_pred EcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33111 1334455555554 3347999999997
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=74.97 E-value=7.8 Score=39.12 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=54.4
Q ss_pred ccCcChHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEEEE-
Q 040629 615 IGGPDDREALALAWRMSANPSV--QLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYE- 691 (786)
Q Consensus 615 ~Gg~ddreAL~~A~rma~~~~~--~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e- 691 (786)
.=.|.|.+|++.|.|+++. +. +++++.+=+.. .++.+++.... +-+++...+
T Consensus 34 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~----------------------a~~~lr~ala~--GaD~vi~v~~ 88 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ----------------------AAETLRTALAM--GADRAILVVA 88 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG----------------------GHHHHHHHHHH--TCSEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh----------------------HHHHHHHHHhc--CCCEEEEEec
Confidence 3458999999999999987 65 88888772110 12233333221 223444443
Q ss_pred -EE---eCChHHHHHHHHHh-hhcCccEEEEccC--CCCc----ccccccCCc
Q 040629 692 -KV---VNNREETTGALREM-ELQKVGLYIVGRE--VMAS----AATADLLGW 733 (786)
Q Consensus 692 -~~---v~~~~e~~~~i~~~-~~~~~DLiiVGr~--~~~~----~~~~gl~~w 733 (786)
.. --+...+..++.++ ++.+|||++.|++ +.++ |+++.+.+|
T Consensus 89 d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 89 ADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp CSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred ChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 11 12345555566554 3456999999997 3332 555555555
No 45
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=74.68 E-value=7.5 Score=39.31 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred ecccCcChHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCceEEE
Q 040629 613 VFIGGPDDREALALAWRMSANPSV--QLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYY 690 (786)
Q Consensus 613 ~f~Gg~ddreAL~~A~rma~~~~~--~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~ 690 (786)
++.=.|.|.+|++.|.|+++. +. +++++.+=+. . .++.+++.... +-+++...
T Consensus 35 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~-----------------~-----a~~~lr~ala~--GaD~vi~v 89 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA-----------------Q-----CQETIRTALAM--GADRGIHV 89 (255)
T ss_dssp CEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEEST-----------------T-----HHHHHHHHHHH--TCSEEEEE
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh-----------------h-----HHHHHHHHHhc--CCCEEEEE
Confidence 334468999999999999987 65 8888877211 0 22333333221 22344444
Q ss_pred E--EE---eCChHHHHHHHHHh-hhcCccEEEEccC--CCCc----ccccccCCc
Q 040629 691 E--KV---VNNREETTGALREM-ELQKVGLYIVGRE--VMAS----AATADLLGW 733 (786)
Q Consensus 691 e--~~---v~~~~e~~~~i~~~-~~~~~DLiiVGr~--~~~~----~~~~gl~~w 733 (786)
+ .. --+...+..++.+. ++.+||+++.|++ +.++ |+++.+.+|
T Consensus 90 ~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 90 EVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred ecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 3 11 12344455556554 3456999999997 3332 455555555
No 46
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=73.85 E-value=12 Score=41.29 Aligned_cols=95 Identities=22% Similarity=0.373 Sum_probs=63.1
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCc
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHN 686 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 686 (786)
..+|++.+.||+|+--+|.++.++.+..+.++.++++..... ..+.+.|.+++.++.+++.
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr---------------g~~s~~~~~~v~~~~~~lg---- 78 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR---------------GRESEEEMEFVKRFCVERR---- 78 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC---------------THHHHHHHHHHHHHHHHTT----
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC---------------ccccHHHHHHHHHHHHHcC----
Confidence 468999999999999999999999888889999999962211 1233456788888887653
Q ss_pred eEEEEEEeC----------ChHHHHHH-----HHH-hhhcCccEEEEccC
Q 040629 687 VNYYEKVVN----------NREETTGA-----LRE-MELQKVGLYIVGRE 720 (786)
Q Consensus 687 v~~~e~~v~----------~~~e~~~~-----i~~-~~~~~~DLiiVGr~ 720 (786)
+.+.-+.++ +.++.... +.+ +++.++|-++.|-+
T Consensus 79 i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~ 128 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHH 128 (464)
T ss_dssp CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCC
T ss_pred CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 333322232 11222222 222 23457999999987
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=70.57 E-value=8.1 Score=40.62 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=41.9
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhc
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 681 (786)
.++++.|.||+|+--.|.++.+.....+.++.++++.. ..+...+.++++++.+++
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDt------------------g~~~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDT------------------RWKFQEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC------------------SCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEEC------------------CCCCHHHHHHHHHHHHHc
Confidence 47999999999999999999998765556677888841 112233567888887765
No 48
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=70.56 E-value=19 Score=37.40 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=44.6
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeE-EEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhc
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQ-LTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~-ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 681 (786)
..+|++.+.||+|+--+|.++.+..+..+.+ ++++++.... ..+.+.+.++++++.+++
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~----------------r~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML----------------RESAERDEEFCKEFAKER 83 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS----------------STHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC----------------CcccHHHHHHHHHHHHHc
Confidence 4689999999999999999999988777888 9999996211 112234667777777665
No 49
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=68.32 E-value=11 Score=32.08 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 538 TMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 538 ~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
...+.|.+++++++++.||+|..++. ||..+......+.+.+++-++ +.|| .++|.-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 45678999999999999999988653 465544445588888888887 8998 567643
No 50
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=66.02 E-value=28 Score=33.74 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhc
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQT 681 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 681 (786)
.+|+|.|.||+|+--.|.++.+.. -++.++++... .+...+.++++++.+++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g------------------~~~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG------------------YLFPETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECS------------------CBCHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCC------------------CCCHHHHHHHHHHHHHh
Confidence 489999999999999999998885 24667777511 11223567788887765
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=64.53 E-value=25 Score=36.44 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=56.0
Q ss_pred eEEEEecccCcChHHHHHHHHHHhc------------------CCCeEEEEEEeeccCCCCccccccccccccCcchhhh
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSA------------------NPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQV 669 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~------------------~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (786)
.+|++.|.||+|+--.|.++.+... .++.++.++++.. +.+...
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDt------------------g~~fpe 115 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQ------------------EETFPT 115 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCC------------------TTCCHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeC------------------CCCCHH
Confidence 4899999999999999999988631 1245677777741 233455
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEEeC-----ChHHHHHHHHHhhhcCccEEEEccCC
Q 040629 670 DAEFVNEFRLQTAGEHNVNYYEKVVN-----NREETTGALREMELQKVGLYIVGREV 721 (786)
Q Consensus 670 d~~~l~~~~~~~~~~~~v~~~e~~v~-----~~~e~~~~i~~~~~~~~DLiiVGr~~ 721 (786)
..+|++++.+++. +.......+ .-.+......+. ....+.+++|.|.
T Consensus 116 t~~fv~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~-~p~~~aii~G~Rr 167 (306)
T 2wsi_A 116 LENFVLETSERYC----LSLYESQRQSGASVNMADAFRDFIKI-YPETEAIVIGIRH 167 (306)
T ss_dssp HHHHHHHHHHHTT----EEEEECCC-----CCHHHHHHHHHHH-CTTCCEEECCCCC
T ss_pred HHHHHHHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhh-CCCCcEEEEEEec
Confidence 7788888887753 332221111 111222222222 3468899999983
No 52
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=61.15 E-value=13 Score=40.62 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=60.8
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcC-CCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCC
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSAN-PSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEH 685 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~-~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 685 (786)
..+|+|.+.||+|+--+|.++.++.+. .+.++.++++...-. .+.+.+.+++.++.+++.-.
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr----------------~~s~~~~~~v~~~~~~lgi~- 75 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS----------------ANADAWVTHCENVCQQWQVP- 75 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC----------------SSHHHHHHHHHHHHHHTTCC-
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC----------------cccHHHHHHHHHHHHHcCCc-
Confidence 458999999999999999999998877 889999999962111 12234667788877765311
Q ss_pred ceEEEEEEe----CChHHHHH-----HHHHhhhcCccEEEEccC
Q 040629 686 NVNYYEKVV----NNREETTG-----ALREMELQKVGLYIVGRE 720 (786)
Q Consensus 686 ~v~~~e~~v----~~~~e~~~-----~i~~~~~~~~DLiiVGr~ 720 (786)
....+..+ .+.++... .+.+. ..++|-++.|-+
T Consensus 76 -~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~-a~~~~~i~tgH~ 117 (433)
T 1ni5_A 76 -LVVERVQLAQEGLGIEAQARQARYQAFART-LLPGEVLVTAQH 117 (433)
T ss_dssp -EEEECCCCCCSSSTTTTHHHHHHHHHHHHT-CCTTEEEECCCC
T ss_pred -EEEEEecCCCCCCCHHHHHHHHHHHHHHHH-HhhCCeEEeecc
Confidence 11111111 11222222 23333 345899999987
No 53
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=47.75 E-value=17 Score=36.66 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=41.4
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcC
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTA 682 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 682 (786)
.++++.|.||+|+--.|.++.+.... +.++.++++.. ..+-..+.++++++.+++.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDt------------------g~~~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDT------------------LHHFPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECC------------------SCBCHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecC------------------CCCCHHHHHHHHHHHHHhC
Confidence 37999999999999999999998765 56677787741 1122335678888877763
No 54
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=46.65 E-value=5.7 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCc
Q 040629 155 GCLFWGLTLTVTGFPAVTWILGELKL 180 (786)
Q Consensus 155 ~~l~lg~~ls~Ts~~vv~~iL~el~l 180 (786)
.++++|+++|.|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 56789999999999999999999886
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=45.86 E-value=65 Score=33.25 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=52.8
Q ss_pred eEEEEecccCcChHHHHHHHHHHh-c-----------------CCCeEEEEEEeeccCCCCccccccccccccCcchhhh
Q 040629 608 QHVVMVFIGGPDDREALALAWRMS-A-----------------NPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQV 669 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma-~-----------------~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (786)
.++++.|.||+|+--.|.++.+.- + .|...+.|+.+.. +..-..
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDT------------------G~~FpE 120 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDH------------------DDTFKT 120 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCC------------------TTCCHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeC------------------CCCCHH
Confidence 479999999999999999998752 1 1234677777741 233344
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEEeCC---hHHHHHHHHHhhhcCccEEEEccC
Q 040629 670 DAEFVNEFRLQTAGEHNVNYYEKVVNN---REETTGALREMELQKVGLYIVGRE 720 (786)
Q Consensus 670 d~~~l~~~~~~~~~~~~v~~~e~~v~~---~~e~~~~i~~~~~~~~DLiiVGr~ 720 (786)
-.+|++++.+++. +.......+. -.+....+++. +..+|.++.|.|
T Consensus 121 T~ef~d~~~~~yg----L~L~v~~p~~~~~~~~~cc~~~K~-~P~~~AwitG~R 169 (308)
T 3fwk_A 121 LENFIEETSLRYS----LSLYESDRDKCETMAEAFETFLQV-FPETKAIVIGIR 169 (308)
T ss_dssp HHHHHHHHHHHTT----EEEEECCTTSCCCHHHHHHHHHHH-CTTCCEEECCCC
T ss_pred HHHHHHHHHHHhC----CcEEEeCCCCCHHHHHHHHHHHHh-CCCCCEEEEEee
Confidence 6688888887763 2222111111 11223334444 446999999998
No 56
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=45.06 E-value=79 Score=31.46 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.6
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.+|++.|.||+|+--.|.++.+.. + ++.++++.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~--~--~v~vv~id 78 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTD 78 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS--T--TCEEEECC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC--C--CCeEEEec
Confidence 479999999999999999998886 2 35566664
No 57
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=38.54 E-value=0.61 Score=31.31 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCchhHHHHHHHhHhcCC
Q 040629 267 VICSFVTEVTGTFSIVGAFVFGIIMPD 293 (786)
Q Consensus 267 l~~~~~a~~~g~~~~lgafvaGl~~~~ 293 (786)
+++++++|.+|+|++++.+.+|+.+.+
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 345678899999999999999999876
No 58
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=37.35 E-value=30 Score=31.27 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=42.2
Q ss_pred ChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCC
Q 040629 538 TMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598 (786)
Q Consensus 538 ~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg 598 (786)
...+.|.++.++++++.||+|..++. ||..+......+.+.+++-++-+.|| .++|.-
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DER 97 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEV-KLHDER 97 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 34689999999999999999987553 46443333346777888877778998 556654
No 59
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=35.98 E-value=46 Score=35.50 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=20.7
Q ss_pred EEEEeCChHHHHHHHHHhhhcCccEEEEccC
Q 040629 690 YEKVVNNREETTGALREMELQKVGLYIVGRE 720 (786)
Q Consensus 690 ~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~ 720 (786)
.+.+++|+-+-++...+- .+.||+||+=-.
T Consensus 264 v~vii~Da~~fl~~~~~~-~~~yDvIIvDl~ 293 (381)
T 3c6k_A 264 YQVLIEDCIPVLKRYAKE-GREFDYVINDLT 293 (381)
T ss_dssp EEEEESCHHHHHHHHHHH-TCCEEEEEEECC
T ss_pred eeeehHHHHHHHHhhhhc-cCceeEEEECCC
Confidence 456789987766544443 567999999653
No 60
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=30.26 E-value=78 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=32.0
Q ss_pred EEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCC
Q 040629 528 HPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAG 564 (786)
Q Consensus 528 ~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~ 564 (786)
+-...+-|...|+..|.++|++-++|+||-|...+..
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 5566777999999999999999999999999986543
No 61
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=29.55 E-value=30 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=20.1
Q ss_pred CceEEEEeEEecCCCChHHHHHHHHhhcCcc
Q 040629 523 TGISVHPLTAMSPFITMHEDVCNLAEDKHIA 553 (786)
Q Consensus 523 ~~v~v~~~t~vs~~~~~~~dI~~~A~e~~ad 553 (786)
..++.+ ..+.| +|.++|..+|.|++.|
T Consensus 10 kkvslh--llvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 10 KKVSLH--LLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CCEEEE--EEECH--HHHHHHHHHHHHHSTT
T ss_pred ceeEEE--EeeCC--chhHHHHHHHHHccch
Confidence 345444 45564 7999999999999876
No 62
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.08 E-value=1.6e+02 Score=29.68 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=26.9
Q ss_pred ceEEEEecccCc---ChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 607 MQHVVMVFIGGP---DDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 607 ~~~I~v~f~Gg~---ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.+||+ +|.||+ |+.+...+|+++.++ ++.|+++.|=
T Consensus 107 ~~rII-lf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG 145 (268)
T 4b4t_W 107 HQRIV-AFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFG 145 (268)
T ss_dssp EEEEE-EEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEES
T ss_pred ceEEE-EEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeC
Confidence 34544 455554 667888888888887 9999999993
No 63
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=25.92 E-value=2.7e+02 Score=27.52 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=45.8
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEH 685 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 685 (786)
..+.|+++.+|-++|.+.+.-+.+-+++.++++..+-+= + ..++++++++......++
T Consensus 125 ~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG---------~-------------~~~~~~L~~iA~~~~~~g 182 (266)
T 4hqo_A 125 AIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIG---------Q-------------GINHQFNRLIAGCRPREP 182 (266)
T ss_dssp SEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECS---------S-------------SCCHHHHHHHHTCCTTCS
T ss_pred CCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecC---------c-------------ccCHHHHHHhhCCCCCCC
Confidence 356778888888877544444444445558888877772 1 124566777765421111
Q ss_pred -ceEEEEEEeCChHHHHHHHHHh
Q 040629 686 -NVNYYEKVVNNREETTGALREM 707 (786)
Q Consensus 686 -~v~~~e~~v~~~~e~~~~i~~~ 707 (786)
.-.|. +.+..+..+..+++
T Consensus 183 ~~~~~~---~~d~~~L~~i~~~l 202 (266)
T 4hqo_A 183 NCKFYS---YADWNEAVALIKPF 202 (266)
T ss_dssp SCTTEE---CSCHHHHHHHHHHH
T ss_pred CCCeEE---ecCHHHHHHHHHHH
Confidence 12232 57777777777777
No 64
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.78 E-value=2.5e+02 Score=26.60 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=80.6
Q ss_pred EeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC--CCCc
Q 040629 529 PLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS--DNGR 606 (786)
Q Consensus 529 ~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~--~~~~ 606 (786)
+...++||..+.+-+-+++.+.+.++-+.- |.++.. . ...++. +.-|. |++.||-... +...
T Consensus 6 ~I~~iapy~~l~~~~~~i~~e~~~~i~i~~--------~~l~~~---v-~~a~~~--~~~~d--VIISRGgta~~lr~~~ 69 (196)
T 2q5c_A 6 KIALISQNENLLNLFPKLALEKNFIPITKT--------ASLTRA---S-KIAFGL--QDEVD--AIISRGATSDYIKKSV 69 (196)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCEEEEEE--------CCHHHH---H-HHHHHH--TTTCS--EEEEEHHHHHHHHTTC
T ss_pred cEEEEEccHHHHHHHHHHHhhhCCceEEEE--------CCHHHH---H-HHHHHh--cCCCe--EEEECChHHHHHHHhC
Confidence 355666888888877777777766554431 222110 1 222333 35566 6788883200 0111
Q ss_pred ceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCCCc
Q 040629 607 MQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHN 686 (786)
Q Consensus 607 ~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 686 (786)
.--|+-+-..|-|=-.||..|++.. -++.++.+- +... +-+.+.++-.
T Consensus 70 ~iPVV~I~~s~~Dil~al~~a~~~~----~kIavvg~~-~~~~--------------------~~~~~~~ll~------- 117 (196)
T 2q5c_A 70 SIPSISIKVTRFDTMRAVYNAKRFG----NELALIAYK-HSIV--------------------DKHEIEAMLG------- 117 (196)
T ss_dssp SSCEEEECCCHHHHHHHHHHHGGGC----SEEEEEEES-SCSS--------------------CHHHHHHHHT-------
T ss_pred CCCEEEEcCCHhHHHHHHHHHHhhC----CcEEEEeCc-chhh--------------------HHHHHHHHhC-------
Confidence 2234444455577788888887753 378888773 1110 0122333221
Q ss_pred eEEEEEEeCChHHHHHHHHHhhhcCccEEEEcc
Q 040629 687 VNYYEKVVNNREETTGALREMELQKVGLYIVGR 719 (786)
Q Consensus 687 v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr 719 (786)
+......+.+.+|..+.++++.++++|.+|=|.
T Consensus 118 ~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~ 150 (196)
T 2q5c_A 118 VKIKEFLFSSEDEITTLISKVKTENIKIVVSGK 150 (196)
T ss_dssp CEEEEEEECSGGGHHHHHHHHHHTTCCEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCeEEECCH
Confidence 345555678888888999988788899865443
No 65
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=24.67 E-value=75 Score=32.59 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=49.4
Q ss_pred cceEEEEecccCcChHHHHHHHHHHhcCCC-eEEEEEEeeccCCCCccccccccccccCcchhhhHHHHHHHHHhhcCCC
Q 040629 606 RMQHVVMVFIGGPDDREALALAWRMSANPS-VQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGE 684 (786)
Q Consensus 606 ~~~~I~v~f~Gg~ddreAL~~A~rma~~~~-~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 684 (786)
..+||++ +||-|- ..++.+.+++. .++|++-+. +.--+..++++.+......++
T Consensus 83 ~pk~VLI--iGgGdG----~~~revlk~~~v~~v~~VEID-------------------~~Vv~~a~~~lp~~~~~~~~d 137 (294)
T 3o4f_A 83 HAKHVLI--IGGGDG----AMLREVTRHKNVESITMVEID-------------------AGVVSFCRQYLPNHNAGSYDD 137 (294)
T ss_dssp CCCEEEE--ESCTTS----HHHHHHHTCTTCCEEEEEESC-------------------HHHHHHHHHHCHHHHTTGGGC
T ss_pred CCCeEEE--ECCCch----HHHHHHHHcCCcceEEEEcCC-------------------HHHHHHHHhcCccccccccCC
Confidence 3568887 566654 34455566655 577777662 223344556665554433334
Q ss_pred CceEEEEEEeCChHHHHHHHHHhhhcCccEEEEccC
Q 040629 685 HNVNYYEKVVNNREETTGALREMELQKVGLYIVGRE 720 (786)
Q Consensus 685 ~~v~~~e~~v~~~~e~~~~i~~~~~~~~DLiiVGr~ 720 (786)
.|+. .+++|+-+- +++. .+.||+||+=-.
T Consensus 138 pRv~---v~~~Dg~~~---l~~~-~~~yDvIi~D~~ 166 (294)
T 3o4f_A 138 PRFK---LVIDDGVNF---VNQT-SQTFDVIISDCT 166 (294)
T ss_dssp TTEE---EEESCTTTT---TSCS-SCCEEEEEESCC
T ss_pred CcEE---EEechHHHH---Hhhc-cccCCEEEEeCC
Confidence 5554 447888654 4555 677999999765
No 66
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=24.09 E-value=1.7e+02 Score=27.78 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=27.3
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
+++++.+.||.|+--++.++.+. +.++..+++.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~ 36 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFH 36 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEE
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEe
Confidence 58999999999999999988775 2567777776
No 67
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=23.88 E-value=1.2e+02 Score=32.54 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCCCCCCcceEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 598 GQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 598 g~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
|.++.+-....++++.+.||.|+--|+.++.+. +.++..+++.
T Consensus 178 g~gglpi~~~~kvlvalSGGvDS~vll~ll~~~----G~~v~av~v~ 220 (413)
T 2c5s_A 178 GAGGLPVGVGGKVMVLLSGGIDSPVAAYLTMKR----GVSVEAVHFH 220 (413)
T ss_dssp CCCSBCTTTTEEEEEECCSSSHHHHHHHHHHHB----TEEEEEEEEE
T ss_pred CCCCCccCCCCeEEEEeCCCChHHHHHHHHHHc----CCcEEEEEEe
Confidence 443333344679999999999999999988763 7888888886
No 68
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=23.57 E-value=81 Score=28.79 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecC
Q 040629 536 FITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDK 597 (786)
Q Consensus 536 ~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdr 597 (786)
.....+.|.++.++++++.|++|... ..||.........+.+...+.++.++||- ++|.
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~--~~nGt~~~~~~~ar~f~~~L~~~~~lpV~-~vDE 98 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPK--NMNGTVGPRGEASQTFAKVLETTYNVPVV-LWDE 98 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCC--CBTTBCCHHHHHHHHHHHHHHHHHCSCEE-EECC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeee--cCCcchhHHHHHHHHHHHHHHHhhCCCEE-EecC
Confidence 34678999999999999999999774 23454332222347777788777799984 4554
No 69
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=21.19 E-value=77 Score=30.87 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred cChHHHHHHHHHHhcCCCeEEEEEEe
Q 040629 618 PDDREALALAWRMSANPSVQLTVLRL 643 (786)
Q Consensus 618 ~ddreAL~~A~rma~~~~~~ltvv~~ 643 (786)
+.+.|+|..|+++++..+.+++++-+
T Consensus 19 ~~s~ell~~A~~La~~~g~~v~av~~ 44 (217)
T 3ih5_A 19 DVSLELLTKGRSLANELNCQLEAVVA 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 66899999999999988888888876
No 70
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=20.43 E-value=95 Score=29.68 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=27.7
Q ss_pred eEEEEecccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 040629 608 QHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLH 644 (786)
Q Consensus 608 ~~I~v~f~Gg~ddreAL~~A~rma~~~~~~ltvv~~~ 644 (786)
.++++.+.||.|+--++.++.+ .+.+++.+++.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~ 39 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITIN 39 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEE
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEe
Confidence 6899999999999988887765 36788888886
Done!