BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040632
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 131/261 (50%), Gaps = 29/261 (11%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMRFAYNKL 59
+T L+LS G +P G+ S L SL +S NNF G LP + L ++R L+V+ ++N+
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 60 SGSFPSWIGVLSK---------------------------LRILRLNNNSFTGPIPNSLF 92
SG P + LS L+ L L NN FTG IP +L
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 93 NLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXX 152
N S L L N + GTIPS +G+LSKL +L L N L+GEIP E+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 153 XXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSI 212
+G IP + N + L ++L N+L+G +P IG L N+ L LS+N+ G IP +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAEL 531
Query: 213 TNATKLIALDLGSNSFSGHIP 233
+ LI LDL +N F+G IP
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIP 552
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 116/288 (40%), Gaps = 45/288 (15%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLS 60
+ L L + G G IP L N S LVSL +S N G +P LG L +LR ++ N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 61 GSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSK 120
G P + + L L L+ N TG IP+ L N + L + +N + G IP IG L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 121 LVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFG---- 176
L L L+ N+ G IP E+ +G IP +F S N
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 177 -----------------------------NQLSGHLPSTI------GHSLRNIE------ 195
N+LS P I GH+ +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 196 YLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243
+L +S N L G IP I + L L+LG N SG IP+ G+LR L+
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 47/288 (16%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLS 60
+ +L+LS L GTIP LG+LS L L + N G +P+EL ++ L + +N L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 61 GSFPS------------------------WIGVLSKLRILRLNNNSFTGPIPNSLFNLSR 96
G PS WIG L L IL+L+NNSF+G IP L +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 97 LEMLRAQSNIIGGTIPSRIGNLSKLV--------------NLGLAFN--------NLQGE 134
L L +N+ GTIP+ + S + N G+ QG
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
++ G PT N ++ L++ N LSG++P IG S+ +
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYL 655
Query: 195 EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242
L L N++ G+IP+ + + L LDL SN G IP L L
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 111/249 (44%), Gaps = 31/249 (12%)
Query: 11 LGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVL 70
L G IP L N + L + +S N G +PK +G+L L +++ + N SG+ P+ +G
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 71 SKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGN--LSKLVNLG--- 125
L L LN N F G IP ++F S + +N I G I N + K +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 126 LAFNNLQGEI--------PTEIXXXX-------------XXXXXXXXXXXXSGLIPPTIF 164
L F ++ E P I SG IP I
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 165 NISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLG 224
++ L++LNL N +SG +P +G LR + L LSSN L G IP +++ T L +DL
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 225 SNSFSGHIP 233
+N+ SG IP
Sbjct: 710 NNNLSGPIP 718
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 34/250 (13%)
Query: 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80
NL FL D+S NNF +P LG L+ + + NKLSG F I ++L++L +++
Sbjct: 198 NLEFL---DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRI-GNLSKLVNLGLAFNNLQGEIPTEI 139
N F GPIP L L+ L N G IP + G L L L+ N+ G +P
Sbjct: 254 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 140 XXXXXXXXXXXXXXXXSGLIP-PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLT 198
SG +P T+ + L +L+L N+ SG LP ++ + ++ L
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 199 LSSNNL--------------------------MGTIPNSITNATKLIALDLGSNSFSGHI 232
LSSNN G IP +++N ++L++L L N SG I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 233 PNTFGNLRHL 242
P++ G+L L
Sbjct: 432 PSSLGSLSKL 441
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSF-LVSLDISENNFHG---------------------- 37
+ L+LS G +P L NLS L++LD+S NNF G
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 38 ----HLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFN 93
+P L L + ++N LSG+ PS +G LSKLR L+L N G IP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 94 LSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXX 153
+ LE L N + G IPS + N + L + L+ N L GEIP I
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG------------- 508
Query: 154 XXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSIT 213
+ L +L L N SG++P+ +G R++ +L L++N GTIP ++
Sbjct: 509 -----------RLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMF 556
Query: 214 NATKLIA 220
+ IA
Sbjct: 557 KQSGKIA 563
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
L++S L G IP+ +G++ +L L++ N+ G +P E+G LR L ++ + NKL G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 64 PSWIGVLSKLRILRLNNNSFTGPIP 88
P + L+ L + L+NN+ +GPIP
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
N++ GG N ++ LD+S N G++PKE+G + L ++ +N +SGS
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 64 PSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPS 113
P +G L L IL L++N G IP ++ L+ L + +N + G IP
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 13/240 (5%)
Query: 1 VTALNLSDMGLGGTIPR--HLGNLSFLVSLDISEN--NFHGHLPKELGQLRRLRVMRFAY 56
+T+L+LS L G + LG+ S L L++S N +F G + L +L L V+ +
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 57 NKLSGS-FPSWI--GVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPS 113
N +SG+ W+ +L+ L ++ N +G + S LE L SN IP
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP- 214
Query: 114 RIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLN 173
+G+ S L +L ++ N L G+ I G IPP + +L L+
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 272
Query: 174 LFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233
L N+ +G +P + + + L LS N+ G +P + + L +L L SN+FSG +P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
L+LS L G IP+ + L+ L +D+S NN G +P E+GQ +F N +
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGY 740
Query: 64 P 64
P
Sbjct: 741 P 741
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 131/261 (50%), Gaps = 29/261 (11%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKE-LGQLRRLRVMRFAYNKL 59
+T L+LS G +P G+ S L SL +S NNF G LP + L ++R L+V+ ++N+
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 60 SGSFPSWIGVLSK---------------------------LRILRLNNNSFTGPIPNSLF 92
SG P + LS L+ L L NN FTG IP +L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 93 NLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXX 152
N S L L N + GTIPS +G+LSKL +L L N L+GEIP E+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 153 XXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSI 212
+G IP + N + L ++L N+L+G +P IG L N+ L LS+N+ G IP +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAEL 534
Query: 213 TNATKLIALDLGSNSFSGHIP 233
+ LI LDL +N F+G IP
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIP 555
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 116/288 (40%), Gaps = 45/288 (15%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLS 60
+ L L + G G IP L N S LVSL +S N G +P LG L +LR ++ N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 61 GSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSK 120
G P + + L L L+ N TG IP+ L N + L + +N + G IP IG L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 121 LVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFG---- 176
L L L+ N+ G IP E+ +G IP +F S N
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 177 -----------------------------NQLSGHLPSTI------GHSLRNIE------ 195
N+LS P I GH+ +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 196 YLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243
+L +S N L G IP I + L L+LG N SG IP+ G+LR L+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 47/288 (16%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLS 60
+ +L+LS L GTIP LG+LS L L + N G +P+EL ++ L + +N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 61 GSFPS------------------------WIGVLSKLRILRLNNNSFTGPIPNSLFNLSR 96
G PS WIG L L IL+L+NNSF+G IP L +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 97 LEMLRAQSNIIGGTIPSRIGNLSKLV--------------NLGLAFN--------NLQGE 134
L L +N+ GTIP+ + S + N G+ QG
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
++ G PT N ++ L++ N LSG++P IG S+ +
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYL 658
Query: 195 EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242
L L N++ G+IP+ + + L LDL SN G IP L L
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 11 LGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVL 70
L G IP L N + L + +S N G +PK +G+L L +++ + N SG+ P+ +G
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 71 SKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRI------------GNL 118
L L LN N F G IP ++F S + +N I G I GNL
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 119 SKLVNL-GLAFNNLQGEIPTEIXXXX-------------XXXXXXXXXXXXSGLIPPTIF 164
+ + N L P I SG IP I
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 165 NISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLG 224
++ L++LNL N +SG +P +G LR + L LSSN L G IP +++ T L +DL
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 225 SNSFSGHIP 233
+N+ SG IP
Sbjct: 713 NNNLSGPIP 721
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 34/250 (13%)
Query: 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80
NL FL D+S NNF +P LG L+ + + NKLSG F I ++L++L +++
Sbjct: 201 NLEFL---DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRI-GNLSKLVNLGLAFNNLQGEIPTEI 139
N F GPIP L L+ L N G IP + G L L L+ N+ G +P
Sbjct: 257 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 140 XXXXXXXXXXXXXXXXSGLIP-PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLT 198
SG +P T+ + L +L+L N+ SG LP ++ + ++ L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 199 LSSNNL--------------------------MGTIPNSITNATKLIALDLGSNSFSGHI 232
LSSNN G IP +++N ++L++L L N SG I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 233 PNTFGNLRHL 242
P++ G+L L
Sbjct: 435 PSSLGSLSKL 444
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 108/247 (43%), Gaps = 52/247 (21%)
Query: 1 VTALNLSDMGLGGTIPRHLGNLSF-LVSLDISENNFHG---------------------- 37
+ L+LS G +P L NLS L++LD+S NNF G
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 38 ----HLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFN 93
+P L L + ++N LSG+ PS +G LSKLR L+L N G IP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 94 LSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXX 153
+ LE L N + G IPS + N + L + L+ N L GEIP I
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG------------- 511
Query: 154 XXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSIT 213
+ L +L L N SG++P+ +G R++ +L L++N GTIP ++
Sbjct: 512 -----------RLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMF 559
Query: 214 NATKLIA 220
+ IA
Sbjct: 560 KQSGKIA 566
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
L++S L G IP+ +G++ +L L++ N+ G +P E+G LR L ++ + NKL G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 64 PSWIGVLSKLRILRLNNNSFTGPIP 88
P + L+ L + L+NN+ +GPIP
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
N++ GG N ++ LD+S N G++PKE+G + L ++ +N +SGS
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 64 PSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIP 112
P +G L L IL L++N G IP ++ L+ L + +N + G IP
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 13/240 (5%)
Query: 1 VTALNLSDMGLGGTIPR--HLGNLSFLVSLDISEN--NFHGHLPKELGQLRRLRVMRFAY 56
+T+L+LS L G + LG+ S L L++S N +F G + L +L L V+ +
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 57 NKLSGS-FPSWI--GVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPS 113
N +SG+ W+ +L+ L ++ N +G + S LE L SN IP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP- 217
Query: 114 RIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLN 173
+G+ S L +L ++ N L G+ I G IPP + +L L+
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLS 275
Query: 174 LFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233
L N+ +G +P + + + L LS N+ G +P + + L +L L SN+FSG +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSF 63
L+LS L G IP+ + L+ L +D+S NN G +P E+GQ +F N +
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGY 743
Query: 64 P 64
P
Sbjct: 744 P 744
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 11 LGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVL 70
L G IP + L+ L L I+ N G +P L Q++ L + F+YN LSG+ P I L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 71 SKLRILRLNNNSFTGPIPNSLFNLSRL-EMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFN 129
L + + N +G IP+S + S+L + N + G IP NL+ L + L+ N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 130 NLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGH 189
L+G+ ++L N L+ L +G
Sbjct: 208 MLEGDASVLFGSDKNTQK------------------------IHLAKNSLAFDL-GKVGL 242
Query: 190 SLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243
S +N+ L L +N + GT+P +T L +L++ N+ G IP GNL+ D
Sbjct: 243 S-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 7/193 (3%)
Query: 45 QLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN--SFTGPIPNSLFNLSRLEMLRA 102
+L+ L+ + F NK +F L L L L+ N SF G S F + L+ L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPT 162
N + T+ S L +L +L +NL+ + + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 163 IFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIAL 221
IFN +S+L +L + GN + I LRN+ +L LS L P + + + L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 222 DLGSNSFSGHIPN 234
++ SN +P+
Sbjct: 500 NMASNQLKS-VPD 511
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 16 PRHLGNLSFLVSLDISENNFHGHLPKEL-GQLRRLRVMRFAYNKLSGSFPSWIGVLSKLR 74
PR +L+ L L + N LPK + +L L+ +R N+L L++L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 75 ILRLNNNSFTGPIPNSLFN-LSRLEMLRAQSNIIGGTI 111
L+L+NN +P F+ L +L+ML+ Q N T
Sbjct: 185 TLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCTC 221
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 50 RVMRFAYNKLSGSFPS-WIGVLSKLRILRLNNNSFTGPIPNSLF-NLSRLEMLRAQSNII 107
+ + NKLS S PS L+KLR+L LN+N +P +F L LE L N +
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97
Query: 108 GGTIPSRIGNLSKLVNLG---LAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIF 164
+P IG +LVNL L N L+ +PP +F
Sbjct: 98 QA-LP--IGVFDQLVNLAELRLDRNQLKS-------------------------LPPRVF 129
Query: 165 N-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDL 223
+ ++ L L+L N+L LP + L +++ L L +N L + T+L L L
Sbjct: 130 DSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 224 GSNSFSGHIPNTFGNLRHL 242
+N F +L L
Sbjct: 189 DNNQLKRVPEGAFDSLEKL 207
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 25 LVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWI-GVLSKLRILRLNNNSF 83
L L + N P+ L +L + YN+L S P + L+ L+ LRL NN
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Query: 84 TGPIPNSLFN-LSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFN 129
+P F+ L+ L+ L+ +N + +L KL L L N
Sbjct: 170 KR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 174 LFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHI- 232
L GN++S ++P+ S RN+ L L SN L G + T T L LDL N+ +
Sbjct: 38 LHGNRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 233 PNTFGNLRHL 242
P TF L HL
Sbjct: 97 PTTFRGLGHL 106
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 8/179 (4%)
Query: 68 GVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLA 127
G+ + R+L L+ N NS +L LE+L+ N I TI IG + L NL
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI--EIGAFNGLANLNTL 117
Query: 128 --FNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPTIFN-ISTLWLLNLFGNQLSGHLP 184
F+N IP IP FN I +L L+L + ++
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 185 STIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243
L N+ YL L+ NL IPN +T KL LDL N S P +F L HL
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 6/187 (3%)
Query: 45 QLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN--SFTGPIPNSLFNLSRLEMLRA 102
+L+ L+ + F NK +F L L L L+ N SF G S F + L+ L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPT 162
N + T+ S L +L +L +NL+ + + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 163 IFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIAL 221
IFN +S+L +L + GN + I LRN+ +L LS L P + + + L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 222 DLGSNSF 228
++ N+F
Sbjct: 500 NMSHNNF 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS 62
AL+LS++ + I ++ FL L ++ N+ LP E+ L LRV+ ++N+L+ S
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-S 284
Query: 63 FPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105
P+ +G +L+ +N T +P NL L+ L + N
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 64 PSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVN 123
P+ I LS LR+L L++N T +P L + +L+ N++ T+P GNL L
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320
Query: 124 LGLAFNNLQGEI 135
LG+ N L+ +
Sbjct: 321 LGVEGNPLEKQF 332
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRL 78
+ L + +LD++ P L L L+V+ N+++ P + L+ L+ L +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 164
Query: 79 NNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIP 136
NN P L NLS+L LRA N I P + +L L+ + L N + P
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 6/187 (3%)
Query: 45 QLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN--SFTGPIPNSLFNLSRLEMLRA 102
+L+ L+ + F NK +F L L L L+ N SF G S F L+ L
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404
Query: 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIXXXXXXXXXXXXXXXXSGLIPPT 162
N + T+ S L +L +L +NL+ + + +
Sbjct: 405 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463
Query: 163 IFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIAL 221
IFN +S+L +L + GN + I LRN+ +L LS L P + + + L L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 222 DLGSNSF 228
++ N+F
Sbjct: 524 NMSHNNF 530
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 43/216 (19%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 170 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 225
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 226 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 279
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 280 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 310
Query: 195 EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230
YLTL NN+ P +++ TKL L +N S
Sbjct: 311 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 344
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 43/216 (19%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 166 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 221
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 222 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 275
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 276 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 306
Query: 195 EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230
YLTL NN+ P +++ TKL L +N S
Sbjct: 307 TYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD 340
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 43/216 (19%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 223 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 277 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 307
Query: 195 EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230
YLTL NN+ P +++ TKL L +N S
Sbjct: 308 TYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD 341
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 15 IPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLR 74
+P+ L N L +D+S N + + +L + +YN+L P L LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 75 ILRLNNNSFTGPIPNSLFN 93
+L L+ N + +P FN
Sbjct: 106 LLSLHGNDISV-VPEGAFN 123
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 172 LNLFGNQLSGHLPSTIGHSLRNIEYLTLS--SNNLMGTIPN-SITNATKLIALDLGSNSF 228
L L GNQ + + L N ++LTL SNN + T+ N S +N T+L+ L L N
Sbjct: 36 LYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 229 SGHIPNTFGNLRHL 242
P TF L+ L
Sbjct: 91 RCIPPRTFDGLKSL 104
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 223 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 277 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 307
Query: 195 EYLTLSSNNLMGTIPNSITNATKL 218
YLTL NN+ P +++ TKL
Sbjct: 308 TYLTLYFNNISDISP--VSSLTKL 329
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 171 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 227 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 280
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 281 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 311
Query: 195 EYLTLSSNNLMGTIPNSITNATKL 218
YLTL NN+ P +++ TKL
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKL 333
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 223 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 277 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 307
Query: 195 EYLTLSSNNLMGTIPNSITNATKL 218
YLTL NN+ P +++ TKL
Sbjct: 308 TYLTLYFNNISDISP--VSSLTKL 329
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43 LGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLF-NLSRLEMLR 101
G+L L + N+L+G P+ S ++ L+L N I N +F L +L+ L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 102 AQSNIIGGTIPSRIGNLSKLVNLGLAFN 129
N I +P +L+ L +L LA N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 20 GNLSFLVSLDISENNFHGH-LPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRL 78
N+S L +LD+S N+ + H + + V+ + N L+GS + + K+++L L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDL 457
Query: 79 NNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIP 136
+NN IP + +L L+ L SN + L+ L + L N P
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 28 LDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81
+D S N H+PK+L R + + + N +S I LS+LR+LRL++N
Sbjct: 36 VDYSNRNL-THVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 43/204 (21%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
+ L NL+ L LDIS N L +L L + N++S P +G+L+ L L
Sbjct: 166 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 221
Query: 77 RLNNNSFT--GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE 134
LN N G + SL NL+ L++ Q I P + L+KL L L N +
Sbjct: 222 SLNGNQLKDIGTLA-SLTNLTDLDLANNQ---ISNLAP--LSGLTKLTELKLGANQISNI 275
Query: 135 IPTEIXXXXXXXXXXXXXXXXSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNI 194
P + ++ L L L NQL P + +L+N+
Sbjct: 276 SP--------------------------LAGLTALTNLELNENQLEDISPIS---NLKNL 306
Query: 195 EYLTLSSNNLMGTIPNSITNATKL 218
YLTL NN+ P +++ TKL
Sbjct: 307 TYLTLYFNNISDISP--VSSLTKL 328
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 163 IFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIAL 221
IFN +S+L +L + GN + I LRN+ +L LS L P + + + L L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 222 DLGSNSF 228
++ N+F
Sbjct: 205 NMSHNNF 211
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 171 LLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA-TKLIALDLGSNSFS 229
+L L NQ++ P SL N++ L L SN L G +P + ++ T+L LDLG+N +
Sbjct: 44 ILYLHDNQITKLEPGVFD-SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 230 GHIPNTFGNLRHL 242
F L HL
Sbjct: 102 VLPSAVFDRLVHL 114
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
R NL L+ N G LG L L + + N LS SW G LS L+ L
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLKYL 103
Query: 77 RLNNNSFTGPIPNSLF-NLSRLEMLR 101
L N + SLF NL+ L+ LR
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLR 129
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 52 MRFAYNKLSGSFPSWIGVLSKLRILRLN 79
+RFA N SGS+ + IGV K+R + +N
Sbjct: 27 LRFADNTFSGSYITTIGVDFKIRTVEIN 54
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRIL 76
R NL L+ N G LG L L + + N LS SW G LS L+ L
Sbjct: 73 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLKYL 129
Query: 77 RLNNNSFTGPIPNSLF-NLSRLEMLR 101
L N + SLF NL+ L+ LR
Sbjct: 130 NLMGNPYQTLGVTSLFPNLTNLQTLR 155
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWI-GVLSKLRILRLN 79
L+ L L +S+N +L +L ++ NKL S P+ + L++L+ L L+
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 80 NNSFTGPIPNSLFN-LSRLEMLRAQSNIIGGTIPSRIGNLSKLVN 123
N +P+ +F+ L+ L+ + +N + P RI LS+ +N
Sbjct: 109 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSRWLN 151
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 159 IPPTIFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA-T 216
+P +F+ +++L L L GN+L LP+ + + L ++ YL LS+N L ++PN + + T
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLT 100
Query: 217 KLIALDLGSNSFSGHIPNTFGNLRHL 242
+L L L +N F L L
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQL 126
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 159 IPPTIFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATK 217
+P +F+ ++ L L L NQL LP + L N+ YL L+ N L T
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 218 LIALDLGSNSFSGHIPNTFGNLRHL 242
L LDL N F L L
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQL 183
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 38 HLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81
H+PK+L Q + ++ + N +S + S I LSKLRIL +++N
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHN 55
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 157 GLIPPTIFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNL 204
++ P F ++ L +LN+ GNQL+ L ++ HS+ N+E L L SN L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 68 GVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLA 127
G+ ++ R+L L N + + LE L NI+ P NL L LGL
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 128 FNNLQ 132
N L+
Sbjct: 89 SNRLK 93
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 169 LWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA-TKLIALDLGSNS 227
LWL N NQ++ P H L N++ L +SN L IP + + T+L LDL N
Sbjct: 38 LWLNN---NQITKLEPGVFDH-LVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH 92
Query: 228 FSGHIPNTFGNLRHL 242
F NL+ L
Sbjct: 93 LKSIPRGAFDNLKSL 107
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 186 TIGHSLRNIEYLTLSSNN 203
T GH RNIEYLTL +N
Sbjct: 122 TDGHGTRNIEYLTLGVDN 139
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 46 LRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105
L+ L+V+ AYNK++ L L++L L+ N ++ + L ++ + Q N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 106 IIGGTIPSRIGNLSKLVNLGLAFNNL 131
I L KL L L N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 186 TIGHSLRNIEYLTLSSNN 203
T GH RNIEYLTL +N
Sbjct: 118 TDGHGTRNIEYLTLGVDN 135
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 30 ISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPN 89
I E++F LG L L + +YN LS SW LS L L L N +
Sbjct: 91 IEEDSFSS-----LGSLEHLDL---SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142
Query: 90 SLF-NLSRLEMLRA 102
SLF +L++L++LR
Sbjct: 143 SLFSHLTKLQILRV 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 30 ISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPN 89
I E++F LG L L + +YN LS SW LS L L L N +
Sbjct: 65 IEEDSFSS-----LGSLEHLDL---SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 116
Query: 90 SLF-NLSRLEMLRA 102
SLF +L++L++LR
Sbjct: 117 SLFSHLTKLQILRV 130
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 174 LFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHI- 232
L GN++S H+P+ + RN+ L L SN L + T L LDL N+ +
Sbjct: 38 LHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 96
Query: 233 PNTFGNL 239
P TF L
Sbjct: 97 PATFHGL 103
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 174 LFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHI- 232
L GN++S H+P+ + RN+ L L SN L + T L LDL N+ +
Sbjct: 39 LHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 233 PNTFGNL 239
P TF L
Sbjct: 98 PATFHGL 104
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 159 IPPTIFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATK 217
+P +F+ ++ L L L NQL LP + L N+ YL L N L T
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 218 LIALDLGSNSFSGHIPNTFGNLRHL 242
L LDL +N F L L
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQL 183
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS 62
+ SD+GL +P+ L + L LD+ N + L+ L + NK+S
Sbjct: 35 VVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 63 FPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLV 122
P L KL L L+ N +P + L+ LR N I S L++++
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148
Query: 123 NLGLAFNNLQ 132
+ L N L+
Sbjct: 149 VVELGTNPLK 158
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS 62
+ SD+GL +P+ L + L LD+ N + L+ L + NK+S
Sbjct: 35 VVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 63 FPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLV 122
P L KL L L+ N +P + L+ LR N I S L++++
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148
Query: 123 NLGLAFNNLQ 132
+ L N L+
Sbjct: 149 VVELGTNPLK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,542,264
Number of Sequences: 62578
Number of extensions: 230905
Number of successful extensions: 745
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 184
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)