Query 040632
Match_columns 243
No_of_seqs 126 out of 2353
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 10:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-29 2.5E-34 226.0 16.2 235 2-237 143-377 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.4E-29 7.4E-34 223.0 16.1 241 1-242 166-430 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.5E-28 7.6E-33 193.5 1.8 242 1-243 151-419 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.1E-28 1.7E-32 191.5 1.9 239 1-239 175-439 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.2E-24 2.7E-29 175.3 -2.8 237 1-243 80-319 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.7E-24 1.2E-28 171.5 -4.4 233 1-240 105-362 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 6.9E-24 1.5E-28 162.3 -8.7 227 4-242 50-299 (565)
8 PLN03210 Resistant to P. syrin 99.8 3.5E-18 7.5E-23 154.0 18.5 101 2-105 614-714 (1153)
9 KOG4237 Extracellular matrix p 99.8 6.5E-21 1.4E-25 145.7 -1.4 226 2-228 70-358 (498)
10 PLN03210 Resistant to P. syrin 99.8 1.2E-17 2.6E-22 150.5 18.3 124 2-130 592-715 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.3E-21 7.2E-26 147.8 -8.0 214 5-230 97-311 (565)
12 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-19 2.3E-24 143.2 -0.5 231 1-231 25-293 (319)
13 KOG0617 Ras suppressor protein 99.7 3.7E-20 7.9E-25 126.8 -3.6 182 18-206 28-213 (264)
14 cd00116 LRR_RI Leucine-rich re 99.7 6.3E-19 1.4E-23 138.9 -2.5 227 3-229 2-263 (319)
15 PRK15387 E3 ubiquitin-protein 99.7 1.7E-16 3.8E-21 135.1 12.0 84 144-237 383-466 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 7.5E-17 1.6E-21 137.8 9.3 77 143-229 325-401 (754)
17 KOG0618 Serine/threonine phosp 99.7 6.9E-19 1.5E-23 147.3 -3.9 219 2-228 222-488 (1081)
18 KOG0617 Ras suppressor protein 99.7 3.6E-19 7.7E-24 122.0 -5.4 184 44-234 30-217 (264)
19 PRK15370 E3 ubiquitin-protein 99.7 6E-16 1.3E-20 132.3 11.7 205 2-235 181-385 (754)
20 PRK15387 E3 ubiquitin-protein 99.7 3.6E-15 7.7E-20 127.2 14.8 207 2-242 204-447 (788)
21 KOG4237 Extracellular matrix p 99.6 8.3E-18 1.8E-22 128.9 -3.6 219 23-242 67-348 (498)
22 KOG0618 Serine/threonine phosp 99.6 2E-17 4.3E-22 138.7 -4.7 201 21-230 217-466 (1081)
23 KOG1909 Ran GTPase-activating 99.4 3.1E-15 6.6E-20 113.2 -3.3 229 1-229 32-311 (382)
24 KOG0532 Leucine-rich repeat (L 99.3 5E-14 1.1E-18 113.1 -2.9 195 21-226 73-270 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 3.3E-12 7.2E-17 90.4 5.1 130 91-225 15-149 (175)
26 KOG0532 Leucine-rich repeat (L 99.3 8E-14 1.7E-18 112.0 -3.8 178 48-236 76-253 (722)
27 KOG3207 Beta-tubulin folding c 99.3 6.5E-13 1.4E-17 103.6 0.8 210 21-230 119-340 (505)
28 KOG3207 Beta-tubulin folding c 99.3 5.5E-13 1.2E-17 104.0 -0.5 184 20-205 143-339 (505)
29 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 3.1E-16 100.0 6.1 174 23-205 116-290 (394)
30 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4E-16 99.3 6.0 198 27-234 97-295 (394)
31 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.1E-16 86.6 5.0 129 67-199 15-147 (175)
32 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.6E-16 92.7 0.6 212 19-230 26-284 (382)
33 PF13855 LRR_8: Leucine rich r 99.1 1.2E-10 2.6E-15 68.3 3.7 61 167-228 1-61 (61)
34 PLN03150 hypothetical protein; 99.1 3.3E-10 7.1E-15 96.6 7.4 108 24-131 419-527 (623)
35 KOG1259 Nischarin, modulator o 99.1 3.9E-11 8.5E-16 90.0 1.5 130 95-231 284-414 (490)
36 KOG4658 Apoptotic ATPase [Sign 99.1 3.2E-11 7E-16 105.3 1.2 107 22-129 544-652 (889)
37 KOG1259 Nischarin, modulator o 99.1 3.7E-11 8E-16 90.1 1.2 118 117-241 282-400 (490)
38 PLN03150 hypothetical protein; 99.0 1.5E-09 3.4E-14 92.6 8.3 108 121-229 420-528 (623)
39 PF13855 LRR_8: Leucine rich r 99.0 7.9E-10 1.7E-14 64.7 4.2 58 24-81 2-59 (61)
40 KOG2982 Uncharacterized conser 98.9 1.1E-10 2.3E-15 87.4 -1.5 212 19-230 41-263 (418)
41 COG5238 RNA1 Ran GTPase-activa 98.9 1.2E-10 2.6E-15 86.1 -1.9 230 1-230 32-317 (388)
42 KOG4658 Apoptotic ATPase [Sign 98.8 1.9E-09 4.2E-14 94.4 3.3 234 2-240 548-794 (889)
43 KOG2120 SCF ubiquitin ligase, 98.7 8.5E-11 1.8E-15 88.0 -7.0 176 48-226 186-373 (419)
44 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.4E-14 87.8 -1.8 108 43-156 91-199 (414)
45 KOG2120 SCF ubiquitin ligase, 98.7 9.8E-11 2.1E-15 87.7 -8.7 194 24-219 186-390 (419)
46 KOG0531 Protein phosphatase 1, 98.6 2.5E-09 5.5E-14 87.3 -2.2 108 19-132 91-199 (414)
47 KOG1859 Leucine-rich repeat pr 98.6 7.6E-10 1.6E-14 92.1 -5.6 127 73-205 166-292 (1096)
48 KOG2982 Uncharacterized conser 98.4 4.3E-08 9.3E-13 73.8 0.4 188 42-230 40-238 (418)
49 KOG1859 Leucine-rich repeat pr 98.3 7.8E-09 1.7E-13 86.3 -6.1 106 117-228 185-291 (1096)
50 PF13306 LRR_5: Leucine rich r 98.3 3.6E-06 7.8E-11 57.1 7.3 123 114-243 7-129 (129)
51 PF13306 LRR_5: Leucine rich r 98.3 4.9E-06 1.1E-10 56.5 7.6 123 17-145 6-128 (129)
52 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.9E-11 60.6 4.9 126 98-228 22-152 (233)
53 PF12799 LRR_4: Leucine Rich r 98.2 1.6E-06 3.4E-11 46.7 2.8 37 192-229 1-37 (44)
54 KOG3665 ZYG-1-like serine/thre 98.1 3.5E-07 7.5E-12 78.6 -0.6 137 95-234 122-268 (699)
55 KOG3665 ZYG-1-like serine/thre 98.1 4.3E-07 9.4E-12 78.0 -0.3 152 47-200 122-283 (699)
56 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.3E-11 65.7 1.7 210 21-231 28-287 (388)
57 KOG4579 Leucine-rich repeat (L 98.1 1.8E-07 3.8E-12 62.6 -2.4 133 96-233 28-163 (177)
58 KOG4579 Leucine-rich repeat (L 98.1 9.4E-08 2E-12 63.8 -3.6 129 72-206 28-160 (177)
59 KOG1644 U2-associated snRNP A' 98.1 1.1E-05 2.5E-10 57.6 5.6 130 71-204 19-152 (233)
60 PF12799 LRR_4: Leucine Rich r 98.0 8.6E-06 1.9E-10 43.8 3.2 36 168-205 2-37 (44)
61 PRK15386 type III secretion pr 97.8 0.00034 7.4E-09 56.3 10.7 135 20-177 49-187 (426)
62 KOG4341 F-box protein containi 97.8 1.8E-07 4E-12 73.4 -7.6 229 1-229 140-414 (483)
63 PRK15386 type III secretion pr 97.5 0.00086 1.9E-08 54.1 8.8 138 67-226 48-187 (426)
64 KOG1947 Leucine rich repeat pr 97.3 1.6E-05 3.4E-10 66.4 -3.2 60 46-105 242-305 (482)
65 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.4E-10 60.6 -4.9 101 118-222 18-123 (388)
66 KOG1947 Leucine rich repeat pr 97.1 4.3E-05 9.3E-10 63.8 -3.1 110 22-131 187-307 (482)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00059 1.3E-08 50.9 2.5 62 70-131 64-128 (260)
68 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 50.7 2.3 103 118-224 42-151 (260)
69 PF00560 LRR_1: Leucine Rich R 96.7 0.0009 1.9E-08 30.0 1.1 20 218-238 2-21 (22)
70 KOG4341 F-box protein containi 96.2 6.8E-05 1.5E-09 59.4 -6.9 65 165-229 292-359 (483)
71 KOG2123 Uncharacterized conser 96.1 0.00034 7.4E-09 52.8 -3.2 83 143-230 19-102 (388)
72 KOG3864 Uncharacterized conser 95.3 0.0018 3.8E-08 46.6 -2.1 33 192-224 151-184 (221)
73 PF13504 LRR_7: Leucine rich r 94.9 0.017 3.7E-07 23.9 1.1 13 217-229 2-14 (17)
74 KOG4308 LRR-containing protein 94.5 5.8E-05 1.3E-09 62.5 -13.1 182 49-230 89-304 (478)
75 KOG3864 Uncharacterized conser 94.1 0.0058 1.3E-07 44.1 -1.8 76 167-243 101-179 (221)
76 smart00370 LRR Leucine-rich re 92.8 0.088 1.9E-06 24.3 1.6 21 216-236 2-22 (26)
77 smart00369 LRR_TYP Leucine-ric 92.8 0.088 1.9E-06 24.3 1.6 21 216-236 2-22 (26)
78 PF13516 LRR_6: Leucine Rich r 92.4 0.01 2.2E-07 27.0 -1.9 14 192-205 2-15 (24)
79 KOG0473 Leucine-rich repeat pr 89.8 0.0063 1.4E-07 45.0 -6.0 87 19-108 38-124 (326)
80 KOG3763 mRNA export factor TAP 86.2 0.45 9.7E-06 39.9 1.7 64 142-205 217-283 (585)
81 KOG4308 LRR-containing protein 83.9 0.0031 6.7E-08 52.4 -11.7 163 73-235 89-281 (478)
82 KOG0473 Leucine-rich repeat pr 82.0 0.027 5.9E-07 41.8 -6.1 64 19-84 61-124 (326)
83 smart00364 LRR_BAC Leucine-ric 81.7 1.1 2.4E-05 20.8 1.3 17 216-233 2-18 (26)
84 smart00368 LRR_RI Leucine rich 76.4 2.1 4.6E-05 20.1 1.5 16 216-231 2-17 (28)
85 smart00365 LRR_SD22 Leucine-ri 75.7 2.5 5.5E-05 19.6 1.5 14 216-229 2-15 (26)
86 KOG3763 mRNA export factor TAP 73.8 2.2 4.9E-05 36.0 1.8 80 117-198 216-307 (585)
87 smart00367 LRR_CC Leucine-rich 72.9 2.5 5.5E-05 19.3 1.2 15 215-229 1-16 (26)
88 TIGR00864 PCC polycystin catio 36.0 26 0.00056 36.2 2.1 30 150-179 2-31 (2740)
89 KOG4242 Predicted myosin-I-bin 20.2 5.7E+02 0.012 22.1 7.4 60 169-228 415-480 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-29 Score=225.97 Aligned_cols=235 Identities=36% Similarity=0.586 Sum_probs=125.7
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 44555555555455555555556666666555555555555555555666665555555455555555555555555555
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
.+.+..|..+..+++|++|++.+|.+.+..|..++.+++|++|++.+|.+....|..+..+++|++|++++|.+.+..|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 55555555555555555555555555544555555555555555555555444444555555555555555555544454
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccC
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFG 237 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 237 (243)
.+..+++|+.|++.+|.+.+..+..+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|+.+.
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 445555555555555555444444333 345555555555555444444444555555555555555444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.4e-29 Score=223.03 Aligned_cols=241 Identities=41% Similarity=0.646 Sum_probs=158.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 56778888877777777777788888888888777767777777777777777777777666777777777777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+.+..|..+.++++|+.|++.+|.+.+..|..+..+.+|++|++++|.+....|..+..+++|+.|++++|.+.+..|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 77766666667777777777777766665556666666666666666666655555555666666666666666655555
Q ss_pred cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc------------------------cccCcccccCC
Q 040632 161 PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM------------------------GTIPNSITNAT 216 (243)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------~~~~~~~~~~~ 216 (243)
..+..+++|+.|++.+|.+.+.+|..+. .+++|+.|++++|.+. +..|..+..++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 5555556666666666655545554444 3455555555555544 44444455556
Q ss_pred cccEEecCCCcccccCCcccCCCCCC
Q 040632 217 KLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 217 ~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+|+.|++++|.+++..|+.|.+++.|
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCC
Confidence 66666666666666666666555554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.5e-28 Score=193.51 Aligned_cols=242 Identities=23% Similarity=0.192 Sum_probs=159.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
||.+|++.|.++.+.-..|..-.+++.|+++.|.|+....+.|..+.+|.+|.++.|.++...+..|.++++|+.|++..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 46788888888766666777778888888888888888888888888888888888888866667788888888888888
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+...-...|++++.|+.+.+.+|.+.......|-.+.++++|++..|+++.....++..+++|+.|+++.|.|....+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 87763323445566666666665555554444444455555555555555443334444444444444444444444444
Q ss_pred cccccC------------------------CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccccc---Ccccc
Q 040632 161 PTIFNI------------------------STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTI---PNSIT 213 (243)
Q Consensus 161 ~~~~~~------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~ 213 (243)
..+.-+ .+|++|.+++|++. .+....+..+.+|+.|||++|.++..+ ...+.
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 444444 44555555555544 444444445677888888888776532 34567
Q ss_pred cCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 214 NATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 214 ~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
+++.|+.|++.||++....-.+|..++.||
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALE 419 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccc
Confidence 788888888888888866667788777775
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8.1e-28 Score=191.46 Aligned_cols=239 Identities=24% Similarity=0.277 Sum_probs=179.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccC-----------
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGV----------- 69 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 69 (243)
++.|++++|.|+.....+|+++.+|..|.++.|.++...+.+|..+++|+.|++..|.+.-..--.|..
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 457888999998888888898999999999999988888888888999999988888765221223333
Q ss_pred -------------CCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCC
Q 040632 70 -------------LSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIP 136 (243)
Q Consensus 70 -------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 136 (243)
+.++++|++..|.++..-...+.++.+|+.|+++.|.+..+.+..|..+++|+.|+++.|++++..+
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 4455555555555553333345566666666666666666666667777777777777777775555
Q ss_pred ccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCC--hhhhcCCCCccEEEcccCccccccCccccc
Q 040632 137 TEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLP--STIGHSLRNIEYLTLSSNNLMGTIPNSITN 214 (243)
Q Consensus 137 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 214 (243)
..+..+..|++|+++.|++....-..|....+|++|++..|.+++.+. ...+..++.|+.|++.||.+....-..+.+
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 566666777777777777764444567788999999999998875443 344556899999999999998776678999
Q ss_pred CCcccEEecCCCcccccCCcccCCC
Q 040632 215 ATKLIALDLGSNSFSGHIPNTFGNL 239 (243)
Q Consensus 215 ~~~L~~l~l~~~~~~~~~~~~~~~l 239 (243)
++.|+.||+.+|.+...-+.+|..+
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred CcccceecCCCCcceeecccccccc
Confidence 9999999999999998889999776
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.2e-24 Score=175.29 Aligned_cols=237 Identities=29% Similarity=0.443 Sum_probs=182.6
Q ss_pred CcEEecCCCCCccc-cCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGT-IPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
||.+++.+|++... +|+.+..+..|+.||+++|.+. ..|..+..-.++-.|++++|.|..+....+.++.-|-.|+++
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 35566777777643 5677788888999999999887 567777777888888999988885555667788888899999
Q ss_pred CcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCcc-ccCCccccCCCcccEEEccccccCCC
Q 040632 80 NNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQ-GEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
+|.+. .+|.....+.+|+.|.+++|.+.......+..+++|+.|.+++...+ ..+|.++..+.+|..++++.|.+. .
T Consensus 159 ~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred cchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 99888 77888888888999999888776555556677778888888877654 356777777888888888888877 4
Q ss_pred CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccc-cCCcccC
Q 040632 159 IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG-HIPNTFG 237 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~ 237 (243)
.|+.+...++|+.|++++|.++ ++..... .+.+|++|+++.|.++ .+|..++.+++|+.|++.+|+++- -+|+-++
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 5788888888888888888887 6665554 3667888888888887 667788888888888888887764 4566677
Q ss_pred CCCCCC
Q 040632 238 NLRHLD 243 (243)
Q Consensus 238 ~l~~L~ 243 (243)
+|..||
T Consensus 314 KL~~Le 319 (1255)
T KOG0444|consen 314 KLIQLE 319 (1255)
T ss_pred hhhhhH
Confidence 766553
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=5.7e-24 Score=171.51 Aligned_cols=233 Identities=28% Similarity=0.351 Sum_probs=159.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++||+++|.+. ..|..+..-+++-.|++++|.|..+.-..|.++..|-+|++++|++. .+|.-+..+.+|++|.+++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence 578999999997 67777888889999999999998666667888889999999999887 5666677888888888888
Q ss_pred cccccCCchhhhccCCccEEEeeccc-CCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNI-IGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 159 (243)
|.+...--..+.++..|+.|.+++.. ....+|..+-.+.+|..++++.|..+ ..|+.+.++++|+.|++++|.++..
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL- 260 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL- 260 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-
Confidence 87763323334455566666666653 22456666667777777777777776 6777777777777777777777632
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc-c-----------------------ccCcccccC
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM-G-----------------------TIPNSITNA 215 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-----------------------~~~~~~~~~ 215 (243)
.-....+.++++|++++|+++ .+|..+. .+++|+.|.+.+|++. . .+|..++.|
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred eccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence 334455667777777777776 6666666 3555555555555442 1 345555566
Q ss_pred CcccEEecCCCcccccCCcccCCCC
Q 040632 216 TKLIALDLGSNSFSGHIPNTFGNLR 240 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~~~~~~l~ 240 (243)
++|+.|.++.|++- ..|+.+.=|+
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcC
Confidence 66666666666655 4454443333
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=6.9e-24 Score=162.35 Aligned_cols=227 Identities=33% Similarity=0.486 Sum_probs=149.5
Q ss_pred EecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCC-----------
Q 040632 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSK----------- 72 (243)
Q Consensus 4 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~----------- 72 (243)
+.+++|.+... ..+..++..++++++.++.+. ..|.+++.+.+++.++.+.|++. .+|..+..++.
T Consensus 50 lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 50 LILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce
Confidence 44555555422 233455556666666666554 34444555555555555555544 34444444444
Q ss_pred ------------ccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCcccc
Q 040632 73 ------------LRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIG 140 (243)
Q Consensus 73 ------------L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 140 (243)
+..++-.+|.+. ..|..+.++.++..+++.+|++....+. .-+++.|++++...|... ..|..++
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred eecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhc
Confidence 444444444444 4455555555555555666655533232 223667777777776665 6777788
Q ss_pred CCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccE
Q 040632 141 NLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIA 220 (243)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (243)
.+.+|+-|++..|.+. ..| .|.+|..|++++++.|.+. .+|.+...+++++..||+..|+++ ..|..++-+.+|..
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r 279 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER 279 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence 8888888888888887 345 6788888889999888888 888888878888889999999887 66777888888889
Q ss_pred EecCCCcccccCCcccCCCCCC
Q 040632 221 LDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 221 l~l~~~~~~~~~~~~~~~l~~L 242 (243)
||+++|.++ ..|.+++++ +|
T Consensus 280 LDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 280 LDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred hcccCCccc-cCCcccccc-ee
Confidence 999999998 666678777 44
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=3.5e-18 Score=154.02 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=47.1
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.|++.++.+. .++..+..+++|+.++++++......| .+..+++|++|++.+|.....+|..+.++++|+.|++++|
T Consensus 614 ~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 614 VKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 34455555443 233334455555555555543222223 2445555566665555433345555555555555555554
Q ss_pred ccccCCchhhhccCCccEEEeecc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
.....+|... ++++|+.|++.+|
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCC
Confidence 3222333322 3344444444443
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=6.5e-21 Score=145.73 Aligned_cols=226 Identities=25% Similarity=0.272 Sum_probs=154.1
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecc-cccCCCccccccCCCCccEEEccC
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAY-NKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
..|++..|.|+.+-+..|..+++|+.|||++|.|+.+.|++|..++.+..|.+.+ |+|++.....|..+..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4688899999977778999999999999999999999999999999988887766 888855445666666666666666
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCC------------------------------
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNN------------------------------ 130 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~------------------------------ 130 (243)
+++.....+.|..++++..|.+-+|.+.......+..+..++.+.+..|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 65554444555566666555555554442222233333333333332221
Q ss_pred -------------------------------ccccCCc-cccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccc
Q 040632 131 -------------------------------LQGEIPT-EIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ 178 (243)
Q Consensus 131 -------------------------------~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (243)
...+.|. .|.++++|+++++++|.++.+-...|.+...+++|.+.+|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 0011111 24556777777777777776666677777777777777777
Q ss_pred cCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcc
Q 040632 179 LSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 179 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
+. .+...+++++.+|+.|+|.+|+++..-|+.|.....|..|++-.|++
T Consensus 310 l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 310 LE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 76 66666676777777788888877766677777777777777766654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.2e-17 Score=150.54 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=88.5
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.|.+.++.+. .+|..| .+.+|+.|++.++.+. ..+..+..+++|+.|+++++......|. ++.+++|+.|++.+|
T Consensus 592 r~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 592 RLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred EEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 44555555443 344444 4678888999888876 4566677889999999988754435553 778899999999988
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCC
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNN 130 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 130 (243)
.....+|..+..+++|+.|++.+|......|..+ ++.+|+.|.+.+|.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 7655788888899999999999875443555443 56666666666654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.3e-21 Score=147.82 Aligned_cols=214 Identities=33% Similarity=0.530 Sum_probs=172.2
Q ss_pred ecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccc
Q 040632 5 NLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFT 84 (243)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 84 (243)
+.+++.+. ..|..+.+...++.++++++.+. ..+..++.+..++.++..+|.++ ..|..+.++.++..+++.+|.+.
T Consensus 97 ~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 97 NVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred hcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh
Confidence 33444443 34445555666666666666665 44555667777777777777777 56777888999999999999999
Q ss_pred cCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc-cc
Q 040632 85 GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP-TI 163 (243)
Q Consensus 85 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~ 163 (243)
..|...-.++.|++++...|.++ ..|..++.+.+|.-+++..|.+. ..| .|..|..|+++.+..|.+. ..|. ..
T Consensus 174 -~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~ 248 (565)
T KOG0472|consen 174 -ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL 248 (565)
T ss_pred -hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh
Confidence 55554445999999999998877 78889999999999999999987 666 7888999999999999987 4454 44
Q ss_pred ccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccc
Q 040632 164 FNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 164 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
..++++..||+.+|+++ +.|..+. -+++|++||+++|.++ .+|..++++ +|++|-+.||++.+
T Consensus 249 ~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH
Confidence 47899999999999999 9999998 5899999999999998 668889999 99999999999874
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.1e-19 Score=143.24 Aligned_cols=231 Identities=25% Similarity=0.299 Sum_probs=155.6
Q ss_pred CcEEecCCCCCccc----cCCccCCcccccEEEcccCcccc------cCCCCccccccccEEEecccccCCCccccccCC
Q 040632 1 VTALNLSDMGLGGT----IPRHLGNLSFLVSLDISENNFHG------HLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVL 70 (243)
Q Consensus 1 l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 70 (243)
++.++++++.++.. ++..+...++++.++++++.+.. ..+..+..+++|+.|++++|.+....+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 46778888877542 33445567778888888876651 223445667889999998888765455555444
Q ss_pred CC---ccEEEccCccccc----CCchhhhcc-CCccEEEeecccCCc----cCCCccCCCCCccEEeecCCCcccc----
Q 040632 71 SK---LRILRLNNNSFTG----PIPNSLFNL-SRLEMLRAQSNIIGG----TIPSRIGNLSKLVNLGLAFNNLQGE---- 134 (243)
Q Consensus 71 ~~---L~~L~l~~~~~~~----~~~~~~~~~-~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~l~l~~~~~~~~---- 134 (243)
.+ |++|++++|.+.. .+...+..+ ++|+.+++++|.++. .....+..+.+|+++++.+|.++..
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44 9999998887762 122334555 788999999888762 1223455667899999988887632
Q ss_pred CCccccCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhhhcC----CCCccEEEcccCcccc
Q 040632 135 IPTEIGNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHS----LRNIEYLTLSSNNLMG 206 (243)
Q Consensus 135 ~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~ 206 (243)
.+..+...++|+.|++++|.+... +...+..+++|+.|++++|.+++.....+... .+.|++|++++|.+.+
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 223344557899999998877532 22345567889999999998875333333322 3689999999998863
Q ss_pred c----cCcccccCCcccEEecCCCccccc
Q 040632 207 T----IPNSITNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 207 ~----~~~~~~~~~~L~~l~l~~~~~~~~ 231 (243)
. +...+..+++|+.+++++|.++..
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2 233455667899999999988854
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=3.7e-20 Score=126.82 Aligned_cols=182 Identities=28% Similarity=0.493 Sum_probs=151.1
Q ss_pred ccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCc
Q 040632 18 HLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRL 97 (243)
Q Consensus 18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 97 (243)
.+.++.+++.|.++++.++ ..|..+..+.+|+.|++.+|.+. .+|..++.+++|+.|+++-|.+. ..|.+|+++|.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3557888999999999998 55667889999999999999998 78888999999999999999988 899999999999
Q ss_pred cEEEeecccCC-ccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeec
Q 040632 98 EMLRAQSNIIG-GTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFG 176 (243)
Q Consensus 98 ~~l~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 176 (243)
+.+++..|++. ...|..|..+..|+.+.++.|.+. .+|..++++++|+.|.+..|.+. ..|..++.+.+|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999998876 456777777888999999999887 88888999999999999999877 4688888899999999999
Q ss_pred cccCCCCChhhhcCCC---CccEEEcccCcccc
Q 040632 177 NQLSGHLPSTIGHSLR---NIEYLTLSSNNLMG 206 (243)
Q Consensus 177 ~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~ 206 (243)
|+++ .+|.++. ++. +=+.+.+.+|++..
T Consensus 183 nrl~-vlppel~-~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 183 NRLT-VLPPELA-NLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ceee-ecChhhh-hhhhhhhHHHHhhhhCCCCC
Confidence 9998 7777655 221 11345555665543
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.3e-19 Score=138.89 Aligned_cols=227 Identities=23% Similarity=0.273 Sum_probs=162.9
Q ss_pred EEecCCCCCcc-ccCCccCCcccccEEEcccCccccc----CCCCccccccccEEEecccccCC------CccccccCCC
Q 040632 3 ALNLSDMGLGG-TIPRHLGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMRFAYNKLSG------SFPSWIGVLS 71 (243)
Q Consensus 3 ~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~ 71 (243)
.|++..+.+++ .....+..+.+|+.++++++.++.. .+..+...+.+++++++.+.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 3345567788899999999988532 34445567789999999876651 1234567789
Q ss_pred CccEEEccCcccccCCchhhhccCC---ccEEEeecccCCc----cCCCccCCC-CCccEEeecCCCcccc----CCccc
Q 040632 72 KLRILRLNNNSFTGPIPNSLFNLSR---LEMLRAQSNIIGG----TIPSRIGNL-SKLVNLGLAFNNLQGE----IPTEI 139 (243)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~~~---L~~l~l~~~~~~~----~~~~~l~~~-~~L~~l~l~~~~~~~~----~~~~~ 139 (243)
+|++|++++|.+....+..+..+.. |++|++.+|.+.. .....+..+ ++|+.+++.+|.++.. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999987555555555544 9999999998762 122234556 8899999999998732 33455
Q ss_pred cCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhh---hcCCCCccEEEcccCccccccCccc
Q 040632 140 GNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTI---GHSLRNIEYLTLSSNNLMGTIPNSI 212 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~ 212 (243)
..+++|++|++++|.+++. ++..+...++|+.|++++|.+.+.....+ ...+++|++|++++|.+.+.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6678899999999988732 22334556799999999999874332222 2257899999999999875322222
Q ss_pred c-----cCCcccEEecCCCccc
Q 040632 213 T-----NATKLIALDLGSNSFS 229 (243)
Q Consensus 213 ~-----~~~~L~~l~l~~~~~~ 229 (243)
. ..+.|+.|++++|.++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHhccCCCceEEEccCCCCC
Confidence 1 2478999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.7e-16 Score=135.10 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=50.9
Q ss_pred cccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEec
Q 040632 144 NLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDL 223 (243)
Q Consensus 144 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 223 (243)
+|+.|++++|.++. +|.. .++|+.|++++|.++ .+|.. +.+|+.|++++|.++ .+|..+.++++|+.|++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 34555555555442 2221 235556666666655 44432 235666777777766 45667777888888888
Q ss_pred CCCcccccCCcccC
Q 040632 224 GSNSFSGHIPNTFG 237 (243)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (243)
++|++++..+..+.
T Consensus 453 s~N~Ls~~~~~~L~ 466 (788)
T PRK15387 453 EGNPLSERTLQALR 466 (788)
T ss_pred CCCCCCchHHHHHH
Confidence 88888877666553
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.5e-17 Score=137.76 Aligned_cols=77 Identities=29% Similarity=0.481 Sum_probs=40.0
Q ss_pred CcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEe
Q 040632 143 ENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALD 222 (243)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 222 (243)
++|+.|++++|.++. +|..+ +++|+.|++++|.++ .+|..+ ++.|++|++++|.+.. +|..+. ..|+.|+
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~Ld 394 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQ 394 (754)
T ss_pred ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHh
Confidence 355566666665553 33332 245666666666665 455433 2456666666666552 333322 2455566
Q ss_pred cCCCccc
Q 040632 223 LGSNSFS 229 (243)
Q Consensus 223 l~~~~~~ 229 (243)
+++|.+.
T Consensus 395 Ls~N~L~ 401 (754)
T PRK15370 395 ASRNNLV 401 (754)
T ss_pred hccCCcc
Confidence 6666555
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=6.9e-19 Score=147.29 Aligned_cols=219 Identities=29% Similarity=0.368 Sum_probs=140.6
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCC--------------------
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSG-------------------- 61 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------- 61 (243)
++|+..+|-+....+ .....++++++++++.+. ..|..++.+.+|+.++..+|.+..
T Consensus 222 ~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred heeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 344445554442222 123455666666666655 334555666666666665554431
Q ss_pred --CccccccCCCCccEEEccCcccccCCchhhh--------------------------ccCCccEEEeecccCCccCCC
Q 040632 62 --SFPSWIGVLSKLRILRLNNNSFTGPIPNSLF--------------------------NLSRLEMLRAQSNIIGGTIPS 113 (243)
Q Consensus 62 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------~~~~L~~l~l~~~~~~~~~~~ 113 (243)
-.|.....+.+|++|++..|.+. ..|..+. ..+.|+.|.+.+|.++...-.
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 23344444667777777777665 3332211 233466667777777755555
Q ss_pred ccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCC
Q 040632 114 RIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRN 193 (243)
Q Consensus 114 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 193 (243)
.+-++..|+.|++++|++.......+.++..|++|++++|.++ .+|..+..++.|++|...+|.+. .+| .+. .++.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~q 453 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQ 453 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCc
Confidence 5777888888888888887333345677888888888888887 45777888888888888888887 777 555 5788
Q ss_pred ccEEEcccCccccccCcccccCCcccEEecCCCcc
Q 040632 194 IEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
|+.+|++.|.++...-......|+|+.||++||.-
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 99999999888643222222237899999999863
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=3.6e-19 Score=122.01 Aligned_cols=184 Identities=27% Similarity=0.504 Sum_probs=155.7
Q ss_pred cccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccE
Q 040632 44 GQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVN 123 (243)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 123 (243)
-.+..+..|.+++|+++ ..|..+.++.+|+.|++.+|+++ .+|.++.++++|+.++++-|.+. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35777888999999998 67788999999999999999999 89999999999999999999887 88999999999999
Q ss_pred EeecCCCcc-ccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccC
Q 040632 124 LGLAFNNLQ-GEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSN 202 (243)
Q Consensus 124 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 202 (243)
+++..|+.. ..+|..|..+..|+.|++++|.+. ..|.-++.+.+|+.|.+.+|.+- .+|.++. .+..|+.|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccc
Confidence 999999885 357888888899999999999988 67888899999999999999987 8999988 5889999999999
Q ss_pred ccccccCcccccC---CcccEEecCCCcccccCCc
Q 040632 203 NLMGTIPNSITNA---TKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 203 ~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~ 234 (243)
+++ .+|..+.++ .+-+...+..|++...+.+
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 998 555555433 2234556666766544443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=6e-16 Score=132.28 Aligned_cols=205 Identities=24% Similarity=0.436 Sum_probs=156.6
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++|+++++.++. +|..+ .++++.|++++|.++. .|..+ ..+|+.|++++|.+. .+|..+ ..+|+.|++++|
T Consensus 181 ~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 181 TELRLKILGLTT-IPACI--PEQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN 251 (754)
T ss_pred eEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence 467888888773 55444 3579999999999884 44433 358999999999887 556544 358999999999
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
.+. .+|..+. .+|+.|++++|.+. ..|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|.
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCc
Confidence 988 6676554 57999999999887 4565543 58999999999887 4554332 479999999999884 454
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcc
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNT 235 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 235 (243)
.+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|+.
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 322 TL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred cc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 33 368999999999998 677654 368999999999997 4565543 68999999999998 44543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=3.6e-15 Score=127.20 Aligned_cols=207 Identities=28% Similarity=0.396 Sum_probs=110.4
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC-
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN- 80 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~- 80 (243)
..|+++.+.++ .+|+.+. ++|+.|.+.+|.++. .|. ..++|++|++++|.+. .+|.. .++|+.|++..
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 35777888776 4565543 467777777777763 332 2467777777777766 33321 23444444444
Q ss_pred -------------------cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccC
Q 040632 81 -------------------NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGN 141 (243)
Q Consensus 81 -------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 141 (243)
|.+. .+|. ..++|+.|++++|.+.. .|.. ..+|+.|.+.+|.++ .+|..
T Consensus 273 ~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l--- 340 (788)
T PRK15387 273 PLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL--- 340 (788)
T ss_pred chhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---
Confidence 4444 2222 12456777776666553 2221 122333333333333 12210
Q ss_pred CCcccEEEccccccCCCCCccc-----------------ccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcc
Q 040632 142 LENLEVLVLGENNLSGLIPPTI-----------------FNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNL 204 (243)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 204 (243)
..+|+.|++++|.++. +|... ....+|+.|++++|.++ .+|.. +++|+.|++++|.+
T Consensus 341 p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~L 414 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRL 414 (788)
T ss_pred ccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc----ccCCCEEEccCCcC
Confidence 1245555555555442 12110 01235666666666665 44432 34677777777777
Q ss_pred ccccCcccccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 205 MGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 205 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
++ +|.. ..+|+.|++++|.++ .+|+.|.++++|
T Consensus 415 ss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 415 TS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred CC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCC
Confidence 63 3432 235677888888887 677777777665
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=8.3e-18 Score=128.93 Aligned_cols=219 Identities=23% Similarity=0.248 Sum_probs=169.0
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC-cccccCCchhhhccCCccEEE
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN-NSFTGPIPNSLFNLSRLEMLR 101 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~ 101 (243)
+..+.++|..|.|+.+.+++|..+++|+.|++++|.|+.+.|.+|.-++++..|-+.+ |.+++.....|.++..++-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4668899999999999999999999999999999999989999999999888887777 888844445688899999998
Q ss_pred eecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEcccccc--------------------------
Q 040632 102 AQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNL-------------------------- 155 (243)
Q Consensus 102 l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------- 155 (243)
+.-+++.-.....+.+++++..|.+..|.+..+-...+.....++++.+..|.+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 888887755666788888888888888776532222344444444444433321
Q ss_pred -----------------------------------CCCCC-cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEc
Q 040632 156 -----------------------------------SGLIP-PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTL 199 (243)
Q Consensus 156 -----------------------------------~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 199 (243)
..+.| ..|..+++|++|++++|+++ ++....++...+++.|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 00001 12457788999999999998 777777778889999999
Q ss_pred ccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 200 SSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
..|++.....+.|.++..|+.|++.+|+|+.-.|.+|..+.+|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 9998876667788999999999999999998888888777654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=2e-17 Score=138.73 Aligned_cols=201 Identities=29% Similarity=0.399 Sum_probs=115.9
Q ss_pred CcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEE
Q 040632 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEML 100 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 100 (243)
.-++++.|+..+|.++..... .--.+|++++++.+.+. ..|.++..+.+|+.+....|.++ .+|.......+|+++
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 346778888888877733221 22356999999999988 67799999999999999999987 555555555555555
Q ss_pred EeecccCCccCCCccCCCCCccEEeecCCCcc------------------------------------------------
Q 040632 101 RAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQ------------------------------------------------ 132 (243)
Q Consensus 101 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~------------------------------------------------ 132 (243)
.+..|.+. ..|......+.|++|++..|.+.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 55555554 23334444555555555555443
Q ss_pred -ccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcc
Q 040632 133 -GEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNS 211 (243)
Q Consensus 133 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 211 (243)
+.--..+...++|+.|++++|.+...-...+.++..|+.|+++||.++ .+|..+. +++.|++|...+|.+. .+| .
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-h
Confidence 222223333344444444444443221223334444444444444444 4444433 3444444444444443 334 4
Q ss_pred cccCCcccEEecCCCcccc
Q 040632 212 ITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 212 ~~~~~~L~~l~l~~~~~~~ 230 (243)
+.+++.|+.+|++-|.++.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhcCcceEEecccchhhh
Confidence 6667777777777776654
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=3.1e-15 Score=113.23 Aligned_cols=229 Identities=20% Similarity=0.223 Sum_probs=167.2
Q ss_pred CcEEecCCCCCccc----cCCccCCcccccEEEcccCccc---ccCC-------CCccccccccEEEecccccCCCccc-
Q 040632 1 VTALNLSDMGLGGT----IPRHLGNLSFLVSLDISENNFH---GHLP-------KELGQLRRLRVMRFAYNKLSGSFPS- 65 (243)
Q Consensus 1 l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~- 65 (243)
++.+++++|.|+.. ....+.+.++|+..++++-.-. ...| .++..+++|++++++.|-+....+.
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 46799999999754 3355677889999999874221 1122 3344567999999999977544443
Q ss_pred ---cccCCCCccEEEccCcccccCCch-------------hhhccCCccEEEeecccCCccCC----CccCCCCCccEEe
Q 040632 66 ---WIGVLSKLRILRLNNNSFTGPIPN-------------SLFNLSRLEMLRAQSNIIGGTIP----SRIGNLSKLVNLG 125 (243)
Q Consensus 66 ---~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~l~ 125 (243)
.+..+..|++|.+.+|++...... ...+-++|+.+..++|++..... ..+...+.|+.++
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 456689999999999998732222 22356789999999998774322 2355678899999
Q ss_pred ecCCCcccc----CCccccCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhh----hcCCCC
Q 040632 126 LAFNNLQGE----IPTEIGNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTI----GHSLRN 193 (243)
Q Consensus 126 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~ 193 (243)
+.+|++... ....+.+|++|+.|++.+|.++.. +...+..+++|+.+.+++|.+......++ .+..|+
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~ 271 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS 271 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence 999998533 335678899999999999988633 23456678899999999999986554444 345789
Q ss_pred ccEEEcccCccccc----cCcccccCCcccEEecCCCccc
Q 040632 194 IEYLTLSSNNLMGT----IPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 194 L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
|+.+++.+|.++.. +...+...|.|..|++++|++.
T Consensus 272 L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 272 LEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999999988642 2233455789999999999994
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=5e-14 Score=113.13 Aligned_cols=195 Identities=28% Similarity=0.434 Sum_probs=157.0
Q ss_pred CcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEE
Q 040632 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEML 100 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 100 (243)
.+.-....|++.|.+. ..|..+..+..|+.+.++.|.+- ..|..+.++..|.+++++.|++. .+|..++.++ |+.+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444566788888776 56777788888989999888877 67888899999999999999998 8888888777 8888
Q ss_pred EeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccC
Q 040632 101 RAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 101 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 180 (243)
-+.+|+++ ..|..++....|..++++.|.+. .+|..+..+.+|+.+.+..|... .+|..+. .-.|..||+++|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee
Confidence 89999888 77888888888999999999887 77788888889999999999887 4566666 456899999999998
Q ss_pred CCCChhhhcCCCCccEEEcccCccccccCcccccC---CcccEEecCCC
Q 040632 181 GHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA---TKLIALDLGSN 226 (243)
Q Consensus 181 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~ 226 (243)
.+|..+. ++++|++|-|.+|++.+. |.+++-. .-.++|+..-|
T Consensus 225 -~iPv~fr-~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFR-KMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhh-hhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 8998887 699999999999999843 5555432 22466666666
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=3.3e-12 Score=90.42 Aligned_cols=130 Identities=25% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhccCCccEEEeecccCCccCCCccC-CCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCccc-ccCCc
Q 040632 91 LFNLSRLEMLRAQSNIIGGTIPSRIG-NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTI-FNIST 168 (243)
Q Consensus 91 ~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 168 (243)
+.++.++++|++.++.++.. ..++ .+.+|+.|++++|.+++. +.+..++.|++|++++|.++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 34556788899999888743 2344 467889999999988733 2466678899999999988854 3333 35788
Q ss_pred ccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccC---cccccCCcccEEecCC
Q 040632 169 LWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIP---NSITNATKLIALDLGS 225 (243)
Q Consensus 169 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 225 (243)
|++|.+++|.+.+.-.-.....+++|++|++.+|++..... ..+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999999988732222233368899999999998874322 2456788888887643
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=8e-14 Score=111.98 Aligned_cols=178 Identities=26% Similarity=0.389 Sum_probs=153.8
Q ss_pred cccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeec
Q 040632 48 RLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLA 127 (243)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~ 127 (243)
--...+++.|++. .+|..+..+..|+.+.++.|.+. .+|...+++..|.+++++.|.+. ..|..++.++ |+.+.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3455678888877 77888888899999999998887 78888999999999999999887 6777777665 8999999
Q ss_pred CCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 128 FNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 128 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
+|.++ .+|+.++..+.|..++.+.|.+. .+|..+....+|+.+.+..|.+. .+|.++. . -.|..||++.|+++ .
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-S-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-C-CceeeeecccCcee-e
Confidence 99988 88888888889999999999988 46788888999999999999998 8998888 3 47899999999998 7
Q ss_pred cCcccccCCcccEEecCCCcccccCCccc
Q 040632 208 IPNSITNATKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 208 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 236 (243)
+|..|+++..|+.|-|++|++. .+|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 7999999999999999999999 555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.5e-13 Score=103.59 Aligned_cols=210 Identities=22% Similarity=0.194 Sum_probs=103.4
Q ss_pred CcccccEEEcccCcccccCC-CCccccccccEEEecccccCCCc--cccccCCCCccEEEccCcccccCCch-hhhccCC
Q 040632 21 NLSFLVSLDISENNFHGHLP-KELGQLRRLRVMRFAYNKLSGSF--PSWIGVLSKLRILRLNNNSFTGPIPN-SLFNLSR 96 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 96 (243)
++.+|+.+.+.++.+..... .....+++++.|+++.|-+.... ......+|+|+.|+++.|.+...... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44555666666554432111 23445666666666665443221 22344566666666666665522221 1224456
Q ss_pred ccEEEeecccCCc-cCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC-CCcccccCCcccEEEe
Q 040632 97 LEMLRAQSNIIGG-TIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL-IPPTIFNISTLWLLNL 174 (243)
Q Consensus 97 L~~l~l~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 174 (243)
|+.|.++.|.++. .....+..++++..|.+..|....+......-++.|++|++++|.+... .......++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666666552 1122234456666666666632112222233345566666666655411 1123445566666666
Q ss_pred eccccCCC-CChh----hhcCCCCccEEEcccCccccc-cCcccccCCcccEEecCCCcccc
Q 040632 175 FGNQLSGH-LPST----IGHSLRNIEYLTLSSNNLMGT-IPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 175 ~~~~~~~~-~~~~----~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
+.+.+..- .++. ....+++|++|++..|++... .-..+..+++|+.+.+..|.++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66665421 1111 112356666666666666421 12234555666666666665553
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.5e-13 Score=103.98 Aligned_cols=184 Identities=27% Similarity=0.294 Sum_probs=76.9
Q ss_pred CCcccccEEEcccCcccc--cCCCCccccccccEEEecccccCCCccc-cccCCCCccEEEccCccccc-CCchhhhccC
Q 040632 20 GNLSFLVSLDISENNFHG--HLPKELGQLRRLRVMRFAYNKLSGSFPS-WIGVLSKLRILRLNNNSFTG-PIPNSLFNLS 95 (243)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~ 95 (243)
..|++++.||+++|=+.. ...+...++|+|+.|+++.|.+...... .-..+++++.|.++.|+++. ++...+..+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 345555555555543321 1122234455555555555544311111 11134555555555555441 1122234455
Q ss_pred CccEEEeecccCCccCCCccCCCCCccEEeecCCCccccC-CccccCCCcccEEEccccccCCCC-Ccc-----cccCCc
Q 040632 96 RLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEI-PTEIGNLENLEVLVLGENNLSGLI-PPT-----IFNIST 168 (243)
Q Consensus 96 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~~ 168 (243)
.|+.|.+..|............++.|+.|++++|.+.+.. -...+.++.|..|+++.+++.... |.. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 5555555555211111122223444555555555543111 122344455555555555544221 111 123445
Q ss_pred ccEEEeeccccCCCCC--hhhhcCCCCccEEEcccCccc
Q 040632 169 LWLLNLFGNQLSGHLP--STIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 169 L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 205 (243)
|++|++..|++. +++ ..+. .+++|+.|.+..|.+.
T Consensus 303 L~~L~i~~N~I~-~w~sl~~l~-~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIR-DWRSLNHLR-TLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCccc-cccccchhh-ccchhhhhhccccccc
Confidence 555555555553 222 1222 2444555555555443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.4e-11 Score=99.99 Aligned_cols=174 Identities=38% Similarity=0.535 Sum_probs=77.1
Q ss_pred ccccEEEcccCcccccCCCCccccc-cccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEE
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLR-RLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLR 101 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 101 (243)
.+++.+++.++.++. .+.....+. +|+.|+++.|.+. ..+..+..+++|+.|+++.|.+. .++......+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 445555555555442 222233332 4555555555544 33333445555555555555555 3333333444555555
Q ss_pred eecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCC
Q 040632 102 AQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSG 181 (243)
Q Consensus 102 l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 181 (243)
+++|.+. ..+........|+.+.+.+|... ..+..+..+.++..+.+.++.+.. .+..+..++.++++++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-
Confidence 5555444 23322223333555555554322 233334444444444444444431 1333444444555555555554
Q ss_pred CCChhhhcCCCCccEEEcccCccc
Q 040632 182 HLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
.++. +. ...++++|+++++.+.
T Consensus 269 ~i~~-~~-~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 SISS-LG-SLTNLRELDLSGNSLS 290 (394)
T ss_pred cccc-cc-ccCccCEEeccCcccc
Confidence 3333 22 3445555555554443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.9e-11 Score=99.29 Aligned_cols=198 Identities=34% Similarity=0.505 Sum_probs=144.3
Q ss_pred EEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCC-CccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 27 SLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLS-KLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
.++...+.+. ........+..++.+++.++.+. ..+....... +|+.|+++.+.+. ..+.....+++|+.|++..|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555442 22223445577888898888887 5565566664 8999999999888 66566778899999999999
Q ss_pred cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCCh
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPS 185 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 185 (243)
.+. ..+...+....|+.+++++|.+. ..|........|+++.+++|.+. ..+..+....++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 887 44444447788999999999887 55555455566899999988544 23556677778888888888876 4444
Q ss_pred hhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCc
Q 040632 186 TIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
.+. .++.+++|++++|.++.. +. +....+++.++++++.+....+.
T Consensus 250 ~~~-~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIG-NLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhc-cccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 444 577899999999999844 43 88888999999999988755443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.9e-11 Score=86.62 Aligned_cols=129 Identities=27% Similarity=0.280 Sum_probs=40.3
Q ss_pred ccCCCCccEEEccCcccccCCchhhh-ccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcc
Q 040632 67 IGVLSKLRILRLNNNSFTGPIPNSLF-NLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENL 145 (243)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 145 (243)
+.+..++++|++.++.+. .+. .+. .+.+|+.|++++|.+... ..+..+..|+.|++++|.+++........+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 334556777777777766 222 233 456777777777776633 235666777777777777763322222346777
Q ss_pred cEEEccccccCCCC-CcccccCCcccEEEeeccccCCCCC--hhhhcCCCCccEEEc
Q 040632 146 EVLVLGENNLSGLI-PPTIFNISTLWLLNLFGNQLSGHLP--STIGHSLRNIEYLTL 199 (243)
Q Consensus 146 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l 199 (243)
++|++++|.+.... -..+..+++|+.|++.+|+++..-. ..+...+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777765321 1345566777777777777762211 233335677777763
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-11 Score=92.75 Aligned_cols=212 Identities=21% Similarity=0.209 Sum_probs=151.3
Q ss_pred cCCcccccEEEcccCcccc----cCCCCccccccccEEEeccccc---CCCcc-------ccccCCCCccEEEccCcccc
Q 040632 19 LGNLSFLVSLDISENNFHG----HLPKELGQLRRLRVMRFAYNKL---SGSFP-------SWIGVLSKLRILRLNNNSFT 84 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~ 84 (243)
...+..++.++|++|.+.. .....+.+.++|+..+++.-.. ....| +.+..+|+|++++++.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456778899999997752 2333455667888888876321 11222 33445789999999999988
Q ss_pred cCCchhh----hccCCccEEEeecccCCccCCC-------------ccCCCCCccEEeecCCCcccc----CCccccCCC
Q 040632 85 GPIPNSL----FNLSRLEMLRAQSNIIGGTIPS-------------RIGNLSKLVNLGLAFNNLQGE----IPTEIGNLE 143 (243)
Q Consensus 85 ~~~~~~~----~~~~~L~~l~l~~~~~~~~~~~-------------~l~~~~~L~~l~l~~~~~~~~----~~~~~~~~~ 143 (243)
...++.+ .++..|++|.|.+|.+...... ..+.-.+|+++....|+..+. ....+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 6555544 5788999999999988743322 245567899999999987533 334566778
Q ss_pred cccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhhhc---CCCCccEEEcccCccccccCccc----
Q 040632 144 NLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH---SLRNIEYLTLSSNNLMGTIPNSI---- 212 (243)
Q Consensus 144 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~---- 212 (243)
.|+.+.++.|+|... ....+..+++|+.|++.+|-++-.....+.+ .+++|+.+++.+|.+.......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999999987522 2345678999999999999887433333322 46789999999999876543322
Q ss_pred -ccCCcccEEecCCCcccc
Q 040632 213 -TNATKLIALDLGSNSFSG 230 (243)
Q Consensus 213 -~~~~~L~~l~l~~~~~~~ 230 (243)
...|.|+.+.+.+|.|+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITR 284 (382)
T ss_pred hccCCCCceeccCcchhHH
Confidence 457899999999999875
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.2e-10 Score=68.26 Aligned_cols=61 Identities=36% Similarity=0.491 Sum_probs=47.8
Q ss_pred CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcc
Q 040632 167 STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
++|++|++++|.++ .++...+.++++|++|++++|.+....+..+.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888877 77776666788888888888888767677788888888888888764
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=3.3e-10 Score=96.61 Aligned_cols=108 Identities=28% Similarity=0.574 Sum_probs=90.7
Q ss_pred cccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEee
Q 040632 24 FLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQ 103 (243)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 103 (243)
.++.|+++++.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788999998888888888899999999999998888888888889999999999999988888888899999999999
Q ss_pred cccCCccCCCccCCC-CCccEEeecCCCc
Q 040632 104 SNIIGGTIPSRIGNL-SKLVNLGLAFNNL 131 (243)
Q Consensus 104 ~~~~~~~~~~~l~~~-~~L~~l~l~~~~~ 131 (243)
+|.+....|..++.. .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 998887777776553 3566777777654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.9e-11 Score=89.98 Aligned_cols=130 Identities=27% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEe
Q 040632 95 SRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNL 174 (243)
Q Consensus 95 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 174 (243)
..|+.+++++|.++ .......-.+.++.|+++.|.+.... .++.+++|+.|++++|.++.. ...-..+-++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 45666666666655 33344445566677777776665222 255566677777777765532 111124456667777
Q ss_pred eccccCCCCChhhhcCCCCccEEEcccCccccc-cCcccccCCcccEEecCCCccccc
Q 040632 175 FGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT-IPNSITNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~ 231 (243)
++|.+. .+ +.+. .+-+|.+||+++|++... --..++++|-|+.+.+.+|++.+.
T Consensus 360 a~N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777664 21 2222 355677777777777431 123467777777777777777643
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=3.2e-11 Score=105.25 Aligned_cols=107 Identities=27% Similarity=0.276 Sum_probs=57.4
Q ss_pred cccccEEEcccCc--ccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccE
Q 040632 22 LSFLVSLDISENN--FHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEM 99 (243)
Q Consensus 22 ~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 99 (243)
+++|++|-+..+. +.......|..|+.|++||+++|.-.+.+|+.++.+.+|++|+++++.+. .+|.++.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3455555555553 33333333555666666666655433455666666666666666666655 56666666666666
Q ss_pred EEeecccCCccCCCccCCCCCccEEeecCC
Q 040632 100 LRAQSNIIGGTIPSRIGNLSKLVNLGLAFN 129 (243)
Q Consensus 100 l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 129 (243)
|++..+......+.....+++|+++.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 666554333233343444555665555443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.7e-11 Score=90.12 Aligned_cols=118 Identities=27% Similarity=0.347 Sum_probs=61.5
Q ss_pred CCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccE
Q 040632 117 NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEY 196 (243)
Q Consensus 117 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 196 (243)
.++.|+.+++++|.++ .+.++..-.|+++.|+++.|++..+ ..+..+++|..|++++|.++ .+...-. .+-+.+.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHh-hhcCEee
Confidence 3455666666666555 3334455555666666666665532 22445556666666666655 3333322 3455566
Q ss_pred EEcccCccccccCcccccCCcccEEecCCCcccc-cCCcccCCCCC
Q 040632 197 LTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG-HIPNTFGNLRH 241 (243)
Q Consensus 197 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~ 241 (243)
|.+++|.+-+. ..+..+.+|..||+++|+|.. +-...+++||-
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 66666655422 234555556666666665553 22233444443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.5e-09 Score=92.56 Aligned_cols=108 Identities=30% Similarity=0.546 Sum_probs=83.9
Q ss_pred ccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcc
Q 040632 121 LVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLS 200 (243)
Q Consensus 121 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 200 (243)
++.|++.++.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+. ++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECc
Confidence 67778888877767777788888888888888888877787788888888888888888877777766 68888888888
Q ss_pred cCccccccCcccccC-CcccEEecCCCccc
Q 040632 201 SNNLMGTIPNSITNA-TKLIALDLGSNSFS 229 (243)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~ 229 (243)
+|.+.+.+|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 888887777766542 35567777777654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=7.9e-10 Score=64.73 Aligned_cols=58 Identities=33% Similarity=0.450 Sum_probs=27.2
Q ss_pred cccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 24 FLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444444444444555554444444333344444444444444444
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.1e-10 Score=87.43 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=118.3
Q ss_pred cCCcccccEEEcccCccccc--CCCCccccccccEEEecccccCCC--ccccccCCCCccEEEccCcccccCCchhhhcc
Q 040632 19 LGNLSFLVSLDISENNFHGH--LPKELGQLRRLRVMRFAYNKLSGS--FPSWIGVLSKLRILRLNNNSFTGPIPNSLFNL 94 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 94 (243)
++..+-++.+.+.++.|... ....-.....++.+++.+|.++.. ....+.++|.|+.|+++.|.+...+..--...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 33444444555555555421 111112345677777777776622 22344567778888887777663222211345
Q ss_pred CCccEEEeecccCC-ccCCCccCCCCCccEEeecCCCcccc--CCccc-cCCCcccEEEccccccCCC--CCcccccCCc
Q 040632 95 SRLEMLRAQSNIIG-GTIPSRIGNLSKLVNLGLAFNNLQGE--IPTEI-GNLENLEVLVLGENNLSGL--IPPTIFNIST 168 (243)
Q Consensus 95 ~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~ 168 (243)
.+|+.|-+.+..+. ......+..++.++.+.++.|..... ..... ..-+.+.++.+.+|..... .......+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 67777777776654 22223345566667777666633210 00011 1122455555555533211 1112234578
Q ss_pred ccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc-cCcccccCCcccEEecCCCcccc
Q 040632 169 LWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT-IPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 169 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
+..+.++.|++.+.-...-++.+|.+..|+|+.+.+.+. --..+.+++.|.-|+++++++..
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888888888877544444455678888888888887542 22457788888888888887763
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.89 E-value=1.2e-10 Score=86.11 Aligned_cols=230 Identities=20% Similarity=0.188 Sum_probs=160.9
Q ss_pred CcEEecCCCCCccc----cCCccCCcccccEEEcccCccc---c-------cCCCCccccccccEEEecccccCCCccc-
Q 040632 1 VTALNLSDMGLGGT----IPRHLGNLSFLVSLDISENNFH---G-------HLPKELGQLRRLRVMRFAYNKLSGSFPS- 65 (243)
Q Consensus 1 l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~- 65 (243)
+..+++++|.|+.. +...+++-++|+..+++.-... + ...+++-+||.|+.++++.|.+....|.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 35789999999864 3356677889999998864321 1 1234556789999999999987655543
Q ss_pred ---cccCCCCccEEEccCcccccCCc-------------hhhhccCCccEEEeecccCCccCCC----ccCCCCCccEEe
Q 040632 66 ---WIGVLSKLRILRLNNNSFTGPIP-------------NSLFNLSRLEMLRAQSNIIGGTIPS----RIGNLSKLVNLG 125 (243)
Q Consensus 66 ---~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~l~ 125 (243)
.++....|.+|.+.+|++..... ....+-|.|+.+..++|++...... .+..-..|+.+.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vk 191 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVK 191 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEE
Confidence 55677899999999999872221 1223568899999999987632111 122335799999
Q ss_pred ecCCCccccCC-----ccccCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhhhc-----CC
Q 040632 126 LAFNNLQGEIP-----TEIGNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH-----SL 191 (243)
Q Consensus 126 l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~ 191 (243)
+.+|.+..... ..+..+.+|+.|+++.|.++.. ....+..++.|++|.+.+|-++.....+.++ ..
T Consensus 192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~ 271 (388)
T COG5238 192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFV 271 (388)
T ss_pred eeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcC
Confidence 99999863321 2345678999999999988733 2234567788999999999988666555543 35
Q ss_pred CCccEEEcccCccccc------cCccc-ccCCcccEEecCCCcccc
Q 040632 192 RNIEYLTLSSNNLMGT------IPNSI-TNATKLIALDLGSNSFSG 230 (243)
Q Consensus 192 ~~L~~L~l~~~~~~~~------~~~~~-~~~~~L~~l~l~~~~~~~ 230 (243)
|+|..|...+|...+. .+... ..+|-|..|.+.+|++..
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7889999988866432 12211 457888888889998873
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-09 Score=94.39 Aligned_cols=234 Identities=20% Similarity=0.226 Sum_probs=150.1
Q ss_pred cEEecCCCC--CccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 2 TALNLSDMG--LGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 2 ~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
++|-+.++. +.......|..++.|+.||+++|.-....|..++++-+|++|+++.+.+. .+|..+.++..|.+|++.
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccc
Confidence 445555553 44334455888999999999988655689999999999999999999988 899999999999999999
Q ss_pred CcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCcccc-CCccccCCCcc----cEEEccccc
Q 040632 80 NNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE-IPTEIGNLENL----EVLVLGENN 154 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L----~~L~l~~~~ 154 (243)
.+......+.....+.+|+++.+...... .....++.+.+|++|....+..... ....+...+.| +.+.+.++.
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~ 705 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS 705 (889)
T ss_pred cccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc
Confidence 88766555666777999999999876522 2223334444444444333222211 11112222222 233333333
Q ss_pred cCCCCCcccccCCcccEEEeeccccCCCCChhh-----hcC-CCCccEEEcccCccccccCcccccCCcccEEecCCCcc
Q 040632 155 LSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTI-----GHS-LRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
.. ..+..+....+|+.|.+.++.+. +..... ... ++++..+...+|... ..+.+..-.|+|+.|.+..|+.
T Consensus 706 ~~-~~~~~~~~l~~L~~L~i~~~~~~-e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 706 KR-TLISSLGSLGNLEELSILDCGIS-EIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred cc-eeecccccccCcceEEEEcCCCc-hhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccc
Confidence 32 23456677889999999999886 222211 101 334444444455433 2344445678999999999988
Q ss_pred cccCCcccCCCC
Q 040632 229 SGHIPNTFGNLR 240 (243)
Q Consensus 229 ~~~~~~~~~~l~ 240 (243)
.+.+.+....+.
T Consensus 783 ~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 783 LEDIIPKLKALL 794 (889)
T ss_pred cccCCCHHHHhh
Confidence 766665554443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.5e-11 Score=87.98 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=110.8
Q ss_pred cccEEEecccccCC-CccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc-cCCccCC-CccCCCCCccEE
Q 040632 48 RLRVMRFAYNKLSG-SFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN-IIGGTIP-SRIGNLSKLVNL 124 (243)
Q Consensus 48 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~-~~l~~~~~L~~l 124 (243)
.|+++|+++..++. .+-..+..+.+|+.|.+.++.+.+.+...+....+|+.++++.+ .+++... -.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 37777777765541 11223455777888888887777666666677778888888776 3442211 235678888888
Q ss_pred eecCCCccccCCc-cccC-CCcccEEEcccccc--C-CCCCcccccCCcccEEEeeccc-cCCCCChhhhcCCCCccEEE
Q 040632 125 GLAFNNLQGEIPT-EIGN-LENLEVLVLGENNL--S-GLIPPTIFNISTLWLLNLFGNQ-LSGHLPSTIGHSLRNIEYLT 198 (243)
Q Consensus 125 ~l~~~~~~~~~~~-~~~~-~~~L~~L~l~~~~~--~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~ 198 (243)
+++||........ .... -++|+.|+++++.- . ..+.-...+++++..||+++|. +++.....++ .++.|+++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 8888876422211 1222 24688888888732 1 1122234578888888888885 4433334444 578888888
Q ss_pred cccCccccccCc---ccccCCcccEEecCCC
Q 040632 199 LSSNNLMGTIPN---SITNATKLIALDLGSN 226 (243)
Q Consensus 199 l~~~~~~~~~~~---~~~~~~~L~~l~l~~~ 226 (243)
++.|... +|. .+...|.|..|++-++
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8888643 333 2467788888888776
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2e-09 Score=87.82 Aligned_cols=108 Identities=28% Similarity=0.380 Sum_probs=47.5
Q ss_pred ccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCcc
Q 040632 43 LGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLV 122 (243)
Q Consensus 43 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 122 (243)
+..+.+++.+++..|.+. .....+..+++|++|++++|.++... .+..++.|+.|++.+|.+... ..+..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 344455555555555544 22222344555555555555544221 122333455555555554421 1223344555
Q ss_pred EEeecCCCccccCC-ccccCCCcccEEEccccccC
Q 040632 123 NLGLAFNNLQGEIP-TEIGNLENLEVLVLGENNLS 156 (243)
Q Consensus 123 ~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 156 (243)
.+++++|.+...-. . ...+.+++.+.+.+|.+.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55555555442222 1 233444555555555443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.8e-11 Score=87.65 Aligned_cols=194 Identities=20% Similarity=0.109 Sum_probs=133.5
Q ss_pred cccEEEcccCcccccC-CCCccccccccEEEecccccCCCccccccCCCCccEEEccCc-ccccCCc-hhhhccCCccEE
Q 040632 24 FLVSLDISENNFHGHL-PKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN-SFTGPIP-NSLFNLSRLEML 100 (243)
Q Consensus 24 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~l 100 (243)
-++++|++...++... -..+..+++|+.|.+.++.+.+...-.+.....|+.++++.+ +++.... -.+.+|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5889999998887432 233577899999999999988777778888899999999887 4443222 236789999999
Q ss_pred EeecccCCccCC-CccCCC-CCccEEeecCCCccc--c-CCccccCCCcccEEEcccccc-CCCCCcccccCCcccEEEe
Q 040632 101 RAQSNIIGGTIP-SRIGNL-SKLVNLGLAFNNLQG--E-IPTEIGNLENLEVLVLGENNL-SGLIPPTIFNISTLWLLNL 174 (243)
Q Consensus 101 ~l~~~~~~~~~~-~~l~~~-~~L~~l~l~~~~~~~--~-~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l 174 (243)
++++|.+..... ..+.+. .+++.|++++++..- . ......+|+++.+|++++|.. +......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999997663322 222333 468889998886531 1 222346799999999999864 3333456778899999999
Q ss_pred eccccCCCCChhhh--cCCCCccEEEcccCccccccCcccccCCccc
Q 040632 175 FGNQLSGHLPSTIG--HSLRNIEYLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 175 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
+.|-. -.|..+. ...|.|.+|++-+|--.+........+++|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 99963 2333322 2468899999998854432222234455543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=2.5e-09 Score=87.27 Aligned_cols=108 Identities=27% Similarity=0.336 Sum_probs=65.8
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
+..+.+++.+++.++.+..... .+..+++|++|+++.|.|.... .+..++.|+.|++.+|.+.. + ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 5566777777777777763322 2566777777777777766332 24456667777777777662 2 2233466777
Q ss_pred EEEeecccCCccCC-CccCCCCCccEEeecCCCcc
Q 040632 99 MLRAQSNIIGGTIP-SRIGNLSKLVNLGLAFNNLQ 132 (243)
Q Consensus 99 ~l~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~ 132 (243)
.+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 77777776653333 1 345666666666666654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=7.6e-10 Score=92.13 Aligned_cols=127 Identities=29% Similarity=0.283 Sum_probs=69.5
Q ss_pred ccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccc
Q 040632 73 LRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGE 152 (243)
Q Consensus 73 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 152 (243)
|...+.++|.+. .+..++.-++.++.|+|++|+++.. ..+..++.|++|+++.|+...........| +|..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 444444444444 4445555566667777777766533 256666677777777766652222122223 366667766
Q ss_pred cccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 153 NNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
|.++.. ..+.++.+|..||+++|-+.+.-.-.....+..|..|.|.||++.
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666533 334556666666776666653333222223455666666666553
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.3e-08 Score=73.78 Aligned_cols=188 Identities=17% Similarity=0.162 Sum_probs=126.2
Q ss_pred CccccccccEEEecccccCCCcc-ccc-cCCCCccEEEccCcccccCCch---hhhccCCccEEEeecccCCccCCCccC
Q 040632 42 ELGQLRRLRVMRFAYNKLSGSFP-SWI-GVLSKLRILRLNNNSFTGPIPN---SLFNLSRLEMLRAQSNIIGGTIPSRIG 116 (243)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~l~ 116 (243)
.+.....++.+.+.++.+..... +.| .....++.+++.+|.+. .+.. .+.++|+|+.|+++.|.+.+.....=.
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~ 118 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL 118 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcc
Confidence 33445566677787877653221 223 34678999999999988 5544 356899999999999988743332113
Q ss_pred CCCCccEEeecCCCccc-cCCccccCCCcccEEEccccccCCC--CCccccc-CCcccEEEeeccccCC-CCChhhhcCC
Q 040632 117 NLSKLVNLGLAFNNLQG-EIPTEIGNLENLEVLVLGENNLSGL--IPPTIFN-ISTLWLLNLFGNQLSG-HLPSTIGHSL 191 (243)
Q Consensus 117 ~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~ 191 (243)
...+|++|.+.+....- .....+..+|.++++.++.|+.... ....... .+.+.++++.+|...- .-...+.+-+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 66789999998877642 2334556778899999999855422 1122222 3478889998886531 1112333457
Q ss_pred CCccEEEcccCcccccc-CcccccCCcccEEecCCCcccc
Q 040632 192 RNIEYLTLSSNNLMGTI-PNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 192 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
|++..+.+..|++.+.. .......|.+..|++..+.+..
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids 238 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS 238 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhccccccc
Confidence 99999999999887543 3446677788889998887764
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=7.8e-09 Score=86.32 Aligned_cols=106 Identities=30% Similarity=0.290 Sum_probs=47.2
Q ss_pred CCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccE
Q 040632 117 NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEY 196 (243)
Q Consensus 117 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 196 (243)
-++.++.|+++.|.+++.. .+..|++|++|+++.|.+..+ |..-.....|..|.+.+|.++ .+.. +. ++.+|..
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v-p~l~~~gc~L~~L~lrnN~l~-tL~g-ie-~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV-PQLSMVGCKLQLLNLRNNALT-TLRG-IE-NLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc-cccchhhhhheeeeecccHHH-hhhh-HH-hhhhhhc
Confidence 3444555555555543211 344555555555555555422 221111122555555555544 2211 11 3555555
Q ss_pred EEcccCcccccc-CcccccCCcccEEecCCCcc
Q 040632 197 LTLSSNNLMGTI-PNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 197 L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~ 228 (243)
||+++|-+.+.- -..++.+..|+.|++.||++
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555555554211 11234444555566666554
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.31 E-value=3.6e-06 Score=57.12 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=44.5
Q ss_pred ccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCC
Q 040632 114 RIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRN 193 (243)
Q Consensus 114 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 193 (243)
.|..+.+|+.+.+.. .+.......+..+++++.+.+..+ +.......+..++.++.+.+.. .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344444555555443 222233344444545555555443 3222233444454556666643 222 334444444566
Q ss_pred ccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 194 IEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
++.+++..+ +.......+.++ +++.+.+.. .+......+|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 666666544 332334445555 666666654 33435555666666553
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.28 E-value=4.9e-06 Score=56.47 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=51.0
Q ss_pred CccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCC
Q 040632 17 RHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSR 96 (243)
Q Consensus 17 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 96 (243)
..|.++.+|+.+.+.. .+......+|..+..|+.+.+..+ +.......|..+++++.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566777777777764 355555666777767777777653 4433344566666677777654 222122334555666
Q ss_pred ccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcc
Q 040632 97 LEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENL 145 (243)
Q Consensus 97 L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 145 (243)
|+.+.+..+ +.......+.++ .++.+.+.. .+.......+..|++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666443 332333445554 566655554 2222333344444443
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.7e-06 Score=60.65 Aligned_cols=126 Identities=22% Similarity=0.226 Sum_probs=85.9
Q ss_pred cEEEeecccCCccCCCccC-CCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeec
Q 040632 98 EMLRAQSNIIGGTIPSRIG-NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFG 176 (243)
Q Consensus 98 ~~l~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 176 (243)
+.+++.+..+..... ++ ...+...++++.|.+.. + ..+..++.|.+|.+.+|.|+.+.|..-.-.+++..|.+.+
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 345555544432211 22 23567788888887752 2 2456678899999999999877676666678899999999
Q ss_pred cccCCCCCh-hhhcCCCCccEEEcccCcccccc---CcccccCCcccEEecCCCcc
Q 040632 177 NQLSGHLPS-TIGHSLRNIEYLTLSSNNLMGTI---PNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~ 228 (243)
|.+. ++.. .-...+|.|++|.+-+|++...- ...+..+|+|+.||+++-..
T Consensus 98 Nsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9886 4332 22235889999999999886432 24567889999999887543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.6e-06 Score=46.70 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=22.5
Q ss_pred CCccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 192 RNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
++|++|++++|.++ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666777777666 34445666777777777777666
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=3.5e-07 Score=78.57 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=91.5
Q ss_pred CCccEEEeecccC-CccCCCccC-CCCCccEEeecCCCcc-ccCCccccCCCcccEEEccccccCCCCCcccccCCcccE
Q 040632 95 SRLEMLRAQSNII-GGTIPSRIG-NLSKLVNLGLAFNNLQ-GEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWL 171 (243)
Q Consensus 95 ~~L~~l~l~~~~~-~~~~~~~l~-~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 171 (243)
.+|++|+++|... ....+..++ .+++|++|.+.+-.+. +.+.....++++|..||+++++++.. ..+.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5788888877532 222223333 3688888888876553 23344556788899999999888744 56778888888
Q ss_pred EEeeccccCC-CCChhhhcCCCCccEEEcccCcccccc--C----cccccCCcccEEecCCCcccccCCc
Q 040632 172 LNLFGNQLSG-HLPSTIGHSLRNIEYLTLSSNNLMGTI--P----NSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 172 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
|.+.+-.+.. ..-..++ ++++|+.||+|..+..... . ..-..+|.|+.||.+++.+.+...+
T Consensus 200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 8888777653 2224566 6889999999987654221 1 1123478899999998887764443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=4.3e-07 Score=77.99 Aligned_cols=152 Identities=19% Similarity=0.256 Sum_probs=86.2
Q ss_pred ccccEEEeccccc-CCCcccccc-CCCCccEEEccCcccc-cCCchhhhccCCccEEEeecccCCccCCCccCCCCCccE
Q 040632 47 RRLRVMRFAYNKL-SGSFPSWIG-VLSKLRILRLNNNSFT-GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVN 123 (243)
Q Consensus 47 ~~L~~L~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 123 (243)
.+|++|++++... ....+..++ .+|+|+.|.+++-.+. ++......+.|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4577777776432 223333333 3688888888775554 22233345677888888888776633 45667777777
Q ss_pred EeecCCCccc-cCCccccCCCcccEEEccccccCCCC------CcccccCCcccEEEeeccccCCCCChhhhcCCCCccE
Q 040632 124 LGLAFNNLQG-EIPTEIGNLENLEVLVLGENNLSGLI------PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEY 196 (243)
Q Consensus 124 l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 196 (243)
|.+.+-.+.. ..-..+..+++|+.||+|........ -+.-..+|+|+.||.+++.+...+...+...-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776654432 12234566777888888776543221 0112245667777777666654444444433455555
Q ss_pred EEcc
Q 040632 197 LTLS 200 (243)
Q Consensus 197 L~l~ 200 (243)
+.+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=1.1e-06 Score=65.67 Aligned_cols=210 Identities=20% Similarity=0.213 Sum_probs=134.5
Q ss_pred CcccccEEEcccCccccc----CCCCccccccccEEEecccccC---CC-------ccccccCCCCccEEEccCcccccC
Q 040632 21 NLSFLVSLDISENNFHGH----LPKELGQLRRLRVMRFAYNKLS---GS-------FPSWIGVLSKLRILRLNNNSFTGP 86 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~~ 86 (243)
-+..++.+++++|.|... ....+.+-.+|+..+++.-... +. +.+.+..||+|+..+++.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356778889998877532 2223344566777777653211 11 123455689999999999988755
Q ss_pred Cchh----hhccCCccEEEeecccCCccCCCcc-------------CCCCCccEEeecCCCccccCCc-----cccCCCc
Q 040632 87 IPNS----LFNLSRLEMLRAQSNIIGGTIPSRI-------------GNLSKLVNLGLAFNNLQGEIPT-----EIGNLEN 144 (243)
Q Consensus 87 ~~~~----~~~~~~L~~l~l~~~~~~~~~~~~l-------------~~~~~L~~l~l~~~~~~~~~~~-----~~~~~~~ 144 (243)
.+.- +.+-..|++|.+++|.+.......+ .+-+.|+++....|++. ..+. .+..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 5543 3456789999999888764433322 34567888888888764 2221 1222247
Q ss_pred ccEEEccccccCCC-----CCcccccCCcccEEEeeccccCCCCChhhhc---CCCCccEEEcccCccccccCccc----
Q 040632 145 LEVLVLGENNLSGL-----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH---SLRNIEYLTLSSNNLMGTIPNSI---- 212 (243)
Q Consensus 145 L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~---- 212 (243)
|+++.+..|+|.-. ....+..+.+|+.|++.+|-++-.....+.. .++.|+.|.+..|.++......+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88999998887622 1123456788999999999887333322222 35668889999998865433222
Q ss_pred --ccCCcccEEecCCCccccc
Q 040632 213 --TNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 213 --~~~~~L~~l~l~~~~~~~~ 231 (243)
...|+|..|...+|.+.+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhhcCCCccccccchhhhcCc
Confidence 2457888889999988763
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.8e-07 Score=62.56 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=81.8
Q ss_pred CccEEEeecccCC--ccCCCccCCCCCccEEeecCCCccccCCc-cccCCCcccEEEccccccCCCCCcccccCCcccEE
Q 040632 96 RLEMLRAQSNIIG--GTIPSRIGNLSKLVNLGLAFNNLQGEIPT-EIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLL 172 (243)
Q Consensus 96 ~L~~l~l~~~~~~--~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 172 (243)
.+..++++.|.+- ...+..+..-..|+.+++++|.+. .+|. ...+++.++++++++|.++ ++|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3555666666443 122334445556777788888776 4444 3345567788888888877 457777788888888
Q ss_pred EeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCC
Q 040632 173 NLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 233 (243)
+++.|.+. ..|..++ .+.++.+|+..+|... .+|..+-.-......++.++++.+..+
T Consensus 106 Nl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 88888887 6776666 3777777887777665 334332222222233445556655444
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=9.4e-08 Score=63.82 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=82.9
Q ss_pred CccEEEccCcccccCCchh---hhccCCccEEEeecccCCccCCCccC-CCCCccEEeecCCCccccCCccccCCCcccE
Q 040632 72 KLRILRLNNNSFTGPIPNS---LFNLSRLEMLRAQSNIIGGTIPSRIG-NLSKLVNLGLAFNNLQGEIPTEIGNLENLEV 147 (243)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 147 (243)
.+..++++.|.+. .+++. +.....|+.+++++|.+.. .|..|. .++..+.+++..|.+. ..|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455666677655 33333 3344567777888887763 343343 4557788888888776 56666788888888
Q ss_pred EEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 148 LVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 148 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
++++.|.+. ..|..+..+.++..|+..+|.+. +++..++. .......++.++++.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGD 160 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccc
Confidence 888888877 34666666778888888888876 77766552 2233334445555543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=1.1e-05 Score=57.57 Aligned_cols=130 Identities=20% Similarity=0.164 Sum_probs=90.6
Q ss_pred CCccEEEccCcccccCCchhhh-ccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEE
Q 040632 71 SKLRILRLNNNSFTGPIPNSLF-NLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLV 149 (243)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 149 (243)
..-+.+++++..+..... ++ -......+++.+|.+.. ...|..+..|.+|.+..|+++++.|..-.-+++|.+|.
T Consensus 19 ~~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 19 VRERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccccchhh--ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 335566666654441111 11 22456778999887753 24577889999999999999977776666678899999
Q ss_pred ccccccCCCC-CcccccCCcccEEEeeccccCCCC--ChhhhcCCCCccEEEcccCcc
Q 040632 150 LGENNLSGLI-PPTIFNISTLWLLNLFGNQLSGHL--PSTIGHSLRNIEYLTLSSNNL 204 (243)
Q Consensus 150 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 204 (243)
+.+|++.... -.-+..|++|++|.+-+|+++..- ...+...+|+|+.||.++=..
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999875221 133567899999999999987322 233334689999999887543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=8.6e-06 Score=43.80 Aligned_cols=36 Identities=39% Similarity=0.554 Sum_probs=23.6
Q ss_pred cccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 168 TLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
+|++|++++|+++ .++..+. ++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence 5677777777776 6665554 5777777777777766
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00034 Score=56.31 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc-ccccCCchhhhccCCcc
Q 040632 20 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN-SFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 98 (243)
..+++++.|++++|.++ ..|. --.+|+.|.+++|.-....|..+ ..+|++|.+++| .+. .+| +.|+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 34577777777777665 3331 12247777777654333444433 356777777776 332 333 2355
Q ss_pred EEEeecccCCccCCCccCCC-CCccEEeecCCCcc--ccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEee
Q 040632 99 MLRAQSNIIGGTIPSRIGNL-SKLVNLGLAFNNLQ--GEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLF 175 (243)
Q Consensus 99 ~l~l~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 175 (243)
.|++.++... .+..+ .+|+.|.+.++... ...+. .-.++|++|.+++|... ..|..+ +.+|+.|.+.
T Consensus 116 ~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-----ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence 5666543322 12222 24555555432211 00110 11245777777776644 223322 2467777766
Q ss_pred cc
Q 040632 176 GN 177 (243)
Q Consensus 176 ~~ 177 (243)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=1.8e-07 Score=73.39 Aligned_cols=229 Identities=17% Similarity=0.042 Sum_probs=108.5
Q ss_pred CcEEecCCCCCccc--cCCccCCcccccEEEcccCc-ccccCCCCc-cccccccEEEecccc-cCCCccc-cccCCCCcc
Q 040632 1 VTALNLSDMGLGGT--IPRHLGNLSFLVSLDISENN-FHGHLPKEL-GQLRRLRVMRFAYNK-LSGSFPS-WIGVLSKLR 74 (243)
Q Consensus 1 l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~ 74 (243)
++.|+++++.=.+. ....-.++|+++.|++.++. +++..-..+ ..+++++++++..|. +++..-+ ...-+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 35566666633222 22334578888888888773 443322222 457888888887753 3322122 223478888
Q ss_pred EEEccCcccc-cCCch-hhhccCCccEEEee--------------------------ccc-CCccCCC-ccCCCCCccEE
Q 040632 75 ILRLNNNSFT-GPIPN-SLFNLSRLEMLRAQ--------------------------SNI-IGGTIPS-RIGNLSKLVNL 124 (243)
Q Consensus 75 ~L~l~~~~~~-~~~~~-~~~~~~~L~~l~l~--------------------------~~~-~~~~~~~-~l~~~~~L~~l 124 (243)
++++++|.-. +..-. -+.++..++.+.+. .|. ++..... .-..+..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 8888887532 21111 12233333333222 221 1111000 01124556666
Q ss_pred eecCCCcc-ccCCc-cccCCCcccEEEccccc-cCCCCC-cccccCCcccEEEeeccccC-CCCChhhhcCCCCccEEEc
Q 040632 125 GLAFNNLQ-GEIPT-EIGNLENLEVLVLGENN-LSGLIP-PTIFNISTLWLLNLFGNQLS-GHLPSTIGHSLRNIEYLTL 199 (243)
Q Consensus 125 ~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l 199 (243)
..+++... +.... .-..+.+|+.+.+.+|+ ++..-. ..-.+++.|+.+++.++... +.--..+..+++.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 66665431 11111 12345677777777764 221111 11234566666666666432 1112233335666666666
Q ss_pred ccCcccccc-----CcccccCCcccEEecCCCccc
Q 040632 200 SSNNLMGTI-----PNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~ 229 (243)
++|...... ...-.....+..+.+++++..
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 666442221 112233445566666666544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00086 Score=54.09 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=86.9
Q ss_pred ccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCccc
Q 040632 67 IGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLE 146 (243)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 146 (243)
+..+.+++.|++++|.+. .+|. -.++|+.|.+++|.-....|..+ ..+|+.|.+.+|.....+| ..|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 445789999999999877 5562 22469999998864333555544 3689999999883222343 3578
Q ss_pred EEEccccccCCCCCcccccCCcccEEEeeccc-cC-CCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecC
Q 040632 147 VLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ-LS-GHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLG 224 (243)
Q Consensus 147 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 224 (243)
.|++..+.... ++. -+++|+.|.+.++. .. ...+. . -+++|++|++.+|... ..|..+- .+|+.|+++
T Consensus 116 ~L~L~~n~~~~-L~~---LPssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-IKN---VPNGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-ccc---CcchHhheecccccccccccccc-c--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 88887655431 111 13467788775432 11 01221 1 1468999999999865 3343333 478899987
Q ss_pred CC
Q 040632 225 SN 226 (243)
Q Consensus 225 ~~ 226 (243)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 76
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=1.6e-05 Score=66.39 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=26.6
Q ss_pred cccccEEEecccc-cCCCccccccC-CCCccEEEccCcc-cccCC-chhhhccCCccEEEeecc
Q 040632 46 LRRLRVMRFAYNK-LSGSFPSWIGV-LSKLRILRLNNNS-FTGPI-PNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 46 l~~L~~L~l~~~~-~~~~~~~~~~~-l~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~l~l~~~ 105 (243)
+++|+.|+++.+. +++..-..+.. +++|++|.+..|. ++... ......++.|+++++.++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555555554 33222222222 4556665554444 22111 122334555666665554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.1e-05 Score=60.60 Aligned_cols=101 Identities=23% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEE
Q 040632 118 LSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYL 197 (243)
Q Consensus 118 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 197 (243)
+.+.+.|+.++|+++++. ...+++.|+.|.|+.|.|+.. ..+..|.+|++|.+..|.|.+.-.-....++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345556666666665332 234566677777777777644 3355677777777777777633333444567777777
Q ss_pred EcccCccccccC-----cccccCCcccEEe
Q 040632 198 TLSSNNLMGTIP-----NSITNATKLIALD 222 (243)
Q Consensus 198 ~l~~~~~~~~~~-----~~~~~~~~L~~l~ 222 (243)
-|..|+-.+.-+ ..+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777776654322 2345567777664
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=4.3e-05 Score=63.78 Aligned_cols=110 Identities=17% Similarity=0.067 Sum_probs=48.8
Q ss_pred cccccEEEcccC-ccccc-CCCCccccccccEEEeccc-ccCCCcc----ccccCCCCccEEEccCcc-cccCCchhh-h
Q 040632 22 LSFLVSLDISEN-NFHGH-LPKELGQLRRLRVMRFAYN-KLSGSFP----SWIGVLSKLRILRLNNNS-FTGPIPNSL-F 92 (243)
Q Consensus 22 ~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~ 92 (243)
++.|+.+.+..+ .++.. .......++.|+.|+++.+ ......+ .....+.+|+.+++.++. ++...-..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455566655554 22211 1122344566666666552 1110111 122234566666666655 332221222 2
Q ss_pred ccCCccEEEeeccc-CCccCCC-ccCCCCCccEEeecCCCc
Q 040632 93 NLSRLEMLRAQSNI-IGGTIPS-RIGNLSKLVNLGLAFNNL 131 (243)
Q Consensus 93 ~~~~L~~l~l~~~~-~~~~~~~-~l~~~~~L~~l~l~~~~~ 131 (243)
.|++|+.+.+.++. ++...-. ....++.|+++++.+|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35666666655554 3321111 122355566666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00059 Score=50.90 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCCccEEEccCc--ccccCCchhhhccCCccEEEeecccCCc-cCCCccCCCCCccEEeecCCCc
Q 040632 70 LSKLRILRLNNN--SFTGPIPNSLFNLSRLEMLRAQSNIIGG-TIPSRIGNLSKLVNLGLAFNNL 131 (243)
Q Consensus 70 l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~ 131 (243)
+++|++|.++.| +....++.-+..+|+|+++++++|++.. .....+..+.+|..|++..|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445555555555 3333333333444555555555554431 0001123334445555555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00064 Score=50.70 Aligned_cols=103 Identities=25% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCCccEEeecCCCccccCCccccCCCcccEEEcccc--ccCCCCCcccccCCcccEEEeeccccCCCCChhh--hcCCCC
Q 040632 118 LSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGEN--NLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTI--GHSLRN 193 (243)
Q Consensus 118 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~ 193 (243)
+..|+.+.+.+.+.+ .+ ..+-.+++|++|.++.| .+...+......+++|+.+++++|++.+ ..++ ...+++
T Consensus 42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 345555556555554 11 22445678899999888 4444444445566899999999998873 2222 224667
Q ss_pred ccEEEcccCcccccc---CcccccCCcccEEecC
Q 040632 194 IEYLTLSSNNLMGTI---PNSITNATKLIALDLG 224 (243)
Q Consensus 194 L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~ 224 (243)
|..|++.+|.....- -..+.-+++|+.++-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 888888888765422 1235556666666443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.68 E-value=0.0009 Score=29.95 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=11.8
Q ss_pred ccEEecCCCcccccCCcccCC
Q 040632 218 LIALDLGSNSFSGHIPNTFGN 238 (243)
Q Consensus 218 L~~l~l~~~~~~~~~~~~~~~ 238 (243)
|+.|++++|.++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 45544554
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.18 E-value=6.8e-05 Score=59.40 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=39.3
Q ss_pred cCCcccEEEeeccc-cCCCCChhhhcCCCCccEEEcccCcc-ccccCcc-cccCCcccEEecCCCccc
Q 040632 165 NISTLWLLNLFGNQ-LSGHLPSTIGHSLRNIEYLTLSSNNL-MGTIPNS-ITNATKLIALDLGSNSFS 229 (243)
Q Consensus 165 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~l~l~~~~~~ 229 (243)
.+..|+.++.+++. ++++...++.+++.+|+.+.+++|.- +...-.. -.+++.|+.+++.++-..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 45666777776653 44444456666777888888888753 3221122 246677888888777443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.00034 Score=52.83 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=64.6
Q ss_pred CcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccccc-CcccccCCcccEE
Q 040632 143 ENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTI-PNSITNATKLIAL 221 (243)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l 221 (243)
.+.+.|+.-+|++..+ +.....+.|+.|.++-|.|+ .+... ..|++|+.|.|..|.+.+.. -..+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3567888888888744 55678899999999999998 44433 25899999999999997532 2347899999999
Q ss_pred ecCCCcccc
Q 040632 222 DLGSNSFSG 230 (243)
Q Consensus 222 ~l~~~~~~~ 230 (243)
+|..|+=-+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 999886544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0018 Score=46.64 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=14.6
Q ss_pred CCccEEEcccC-ccccccCcccccCCcccEEecC
Q 040632 192 RNIEYLTLSSN-NLMGTIPNSITNATKLIALDLG 224 (243)
Q Consensus 192 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~ 224 (243)
++|+.|++++| ++++..-..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44555555554 2232223334444444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.88 E-value=0.017 Score=23.89 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=5.5
Q ss_pred cccEEecCCCccc
Q 040632 217 KLIALDLGSNSFS 229 (243)
Q Consensus 217 ~L~~l~l~~~~~~ 229 (243)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.45 E-value=5.8e-05 Score=62.45 Aligned_cols=182 Identities=20% Similarity=0.217 Sum_probs=104.0
Q ss_pred ccEEEecccccCCCcc----ccccCCCCccEEEccCcccccCCchhh----hcc-CCccEEEeecccCCccCC----Ccc
Q 040632 49 LRVMRFAYNKLSGSFP----SWIGVLSKLRILRLNNNSFTGPIPNSL----FNL-SRLEMLRAQSNIIGGTIP----SRI 115 (243)
Q Consensus 49 L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~~~----~~l 115 (243)
+..+.+.+|.+..... ..+...++|..|++++|.+.......+ ... ..+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6666777776653322 344556778888888877763222222 122 456667776666653222 233
Q ss_pred CCCCCccEEeecCCCcccc----CCccc----cCCCcccEEEccccccCCCC----CcccccCCc-ccEEEeeccccCCC
Q 040632 116 GNLSKLVNLGLAFNNLQGE----IPTEI----GNLENLEVLVLGENNLSGLI----PPTIFNIST-LWLLNLFGNQLSGH 182 (243)
Q Consensus 116 ~~~~~L~~l~l~~~~~~~~----~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 182 (243)
.....++.+++..|.+... .+..+ ....+++++++.+|.++... ...+...+. +..+++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4455677777777665311 11222 23456788888888765221 122334444 66688888877644
Q ss_pred CChhhhcC---C-CCccEEEcccCccccc----cCcccccCCcccEEecCCCcccc
Q 040632 183 LPSTIGHS---L-RNIEYLTLSSNNLMGT----IPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 183 ~~~~~~~~---~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
........ + +.++.++++.|.+.+. +...+..++.++.+.+++|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22222222 2 4557888888888653 33445667788888888887753
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.0058 Score=44.08 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc--cCcccccCCcccEEecCCC-cccccCCcccCCCCCCC
Q 040632 167 STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT--IPNSITNATKLIALDLGSN-SFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~l~~L~ 243 (243)
..++.++.+++.|..+.-..+. +++.++.|.+.+|.-.+. +...-.-.++|+.|++++| +|+.....++.++++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4678888888888734444444 788899999999865432 1111225689999999998 67777777777766653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.76 E-value=0.088 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=11.9
Q ss_pred CcccEEecCCCcccccCCccc
Q 040632 216 TKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~~~~ 236 (243)
++|+.|++++|+++..++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664433434
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.76 E-value=0.088 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=11.9
Q ss_pred CcccEEecCCCcccccCCccc
Q 040632 216 TKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~~~~ 236 (243)
++|+.|++++|+++..++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664433434
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.44 E-value=0.01 Score=27.02 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=5.9
Q ss_pred CCccEEEcccCccc
Q 040632 192 RNIEYLTLSSNNLM 205 (243)
Q Consensus 192 ~~L~~L~l~~~~~~ 205 (243)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555544
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.77 E-value=0.0063 Score=45.03 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=50.4
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
+..+...+.||++.+.+. ..-..|.-+..+..++++.+.+. ..|..+.....++.++...|.+. ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 445556666666666543 22333445555666666666555 45555665666666666666555 5566666666666
Q ss_pred EEEeecccCC
Q 040632 99 MLRAQSNIIG 108 (243)
Q Consensus 99 ~l~l~~~~~~ 108 (243)
++++-++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666555443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.25 E-value=0.45 Score=39.94 Aligned_cols=64 Identities=23% Similarity=0.162 Sum_probs=27.0
Q ss_pred CCcccEEEccccccCCC--CCcccccCCcccEEEeeccccCCCCChhhhc-CCCCccEEEcccCccc
Q 040632 142 LENLEVLVLGENNLSGL--IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH-SLRNIEYLTLSSNNLM 205 (243)
Q Consensus 142 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 205 (243)
.+.+..+.+++|.+... +.......|+|.+|+|++|...-....++.+ ....|++|-+.||++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 34555555555554311 1122234455566666655211111112211 1234555555565553
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.90 E-value=0.0031 Score=52.45 Aligned_cols=163 Identities=24% Similarity=0.199 Sum_probs=106.1
Q ss_pred ccEEEccCcccccCC----chhhhccCCccEEEeecccCCccCC----CccCCC-CCccEEeecCCCcccc----CCccc
Q 040632 73 LRILRLNNNSFTGPI----PNSLFNLSRLEMLRAQSNIIGGTIP----SRIGNL-SKLVNLGLAFNNLQGE----IPTEI 139 (243)
Q Consensus 73 L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~-~~L~~l~l~~~~~~~~----~~~~~ 139 (243)
+..+.+.+|.+.... ...+...+.|..+++++|.+..... ..+... ..++++.+..|..+.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777788888777433 2344567889999999998773222 123333 5678888888887644 33445
Q ss_pred cCCCcccEEEccccccCCC----CCcccc----cCCcccEEEeeccccCCCCChh---hhcCCCC-ccEEEcccCccccc
Q 040632 140 GNLENLEVLVLGENNLSGL----IPPTIF----NISTLWLLNLFGNQLSGHLPST---IGHSLRN-IEYLTLSSNNLMGT 207 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-L~~L~l~~~~~~~~ 207 (243)
.....++.++++.|.+... .+..+. ...+++++.+.+|.++...... ..+..+. +..+++++|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5577899999999977411 222233 4678999999999887322211 1123344 66699999987643
Q ss_pred ----cCcccccC-CcccEEecCCCcccccCCcc
Q 040632 208 ----IPNSITNA-TKLIALDLGSNSFSGHIPNT 235 (243)
Q Consensus 208 ----~~~~~~~~-~~L~~l~l~~~~~~~~~~~~ 235 (243)
....+..+ +.++.++++.|.+++.....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 23334455 67899999999998755433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.96 E-value=0.027 Score=41.80 Aligned_cols=64 Identities=25% Similarity=0.213 Sum_probs=33.5
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFT 84 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 84 (243)
|+.+.-+..++++.+.+. ..|..+.++..+..+++..|..+ ..|.++...+++++++...+.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 444444555555555544 34444555555555555555544 45555555555555555554433
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.68 E-value=1.1 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=11.7
Q ss_pred CcccEEecCCCcccccCC
Q 040632 216 TKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~ 233 (243)
+.|+.|++++|+++ ..|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 35677888888877 444
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.36 E-value=2.1 Score=20.08 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=12.0
Q ss_pred CcccEEecCCCccccc
Q 040632 216 TKLIALDLGSNSFSGH 231 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~ 231 (243)
++|+.|++++|.+..+
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4678888888888643
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.66 E-value=2.5 Score=19.58 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=11.7
Q ss_pred CcccEEecCCCccc
Q 040632 216 TKLIALDLGSNSFS 229 (243)
Q Consensus 216 ~~L~~l~l~~~~~~ 229 (243)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888999999887
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.77 E-value=2.2 Score=36.01 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCCccEEeecCCCcccc--CCccccCCCcccEEEcccc--ccCCCCCcccc--cCCcccEEEeeccccCCCCC------
Q 040632 117 NLSKLVNLGLAFNNLQGE--IPTEIGNLENLEVLVLGEN--NLSGLIPPTIF--NISTLWLLNLFGNQLSGHLP------ 184 (243)
Q Consensus 117 ~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~------ 184 (243)
+.+.+..+.+++|++... ........|+|++|+|++| .+.. ...+. +...|++|-+.||++...+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 456677888888887422 2223345689999999999 3321 11222 34578999999999864332
Q ss_pred hhhhcCCCCccEEE
Q 040632 185 STIGHSLRNIEYLT 198 (243)
Q Consensus 185 ~~~~~~~~~L~~L~ 198 (243)
.++.+-+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 34445678887776
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.87 E-value=2.5 Score=19.31 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=11.5
Q ss_pred CCcccEEecCCCc-cc
Q 040632 215 ATKLIALDLGSNS-FS 229 (243)
Q Consensus 215 ~~~L~~l~l~~~~-~~ 229 (243)
|++|+.|++++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788899998885 44
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.96 E-value=26 Score=36.22 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=17.0
Q ss_pred ccccccCCCCCcccccCCcccEEEeecccc
Q 040632 150 LGENNLSGLIPPTIFNISTLWLLNLFGNQL 179 (243)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 179 (243)
|++|.++..-...|..+++|++|+|.+|++
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 455666544444555556666666666654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.20 E-value=5.7e+02 Score=22.09 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=25.4
Q ss_pred ccEEEeeccccCCCCChhhhc--CCCCccEEEcccCcccc----ccCcccccCCcccEEecCCCcc
Q 040632 169 LWLLNLFGNQLSGHLPSTIGH--SLRNIEYLTLSSNNLMG----TIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 169 L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
+..+.++.+.........++. .-+.+..|++++|.... .+|........++-+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 344455555444222222221 12345666666664432 1233333333444444444433
Done!