Query 040632
Match_columns 243
No_of_seqs 126 out of 2353
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-34 9.6E-39 224.3 16.1 239 1-243 52-294 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.3E-33 1.8E-37 240.7 21.4 242 1-243 396-707 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.1E-32 1.1E-36 236.0 20.9 243 1-243 370-683 (768)
4 2id5_A Lingo-1, leucine rich r 100.0 4.4E-31 1.5E-35 217.6 22.4 241 1-242 34-298 (477)
5 3v47_A TOLL-like receptor 5B a 100.0 1E-30 3.5E-35 214.1 21.1 107 136-243 292-398 (455)
6 3v47_A TOLL-like receptor 5B a 100.0 5.2E-31 1.8E-35 215.9 19.1 242 1-243 32-374 (455)
7 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-31 4.4E-36 209.2 13.2 226 1-230 78-306 (313)
8 4fcg_A Uncharacterized protein 100.0 3E-30 1E-34 202.6 20.2 222 2-229 84-314 (328)
9 2id5_A Lingo-1, leucine rich r 100.0 2.1E-30 7E-35 213.6 19.9 242 1-243 58-323 (477)
10 4fcg_A Uncharacterized protein 100.0 1.2E-29 4E-34 199.3 19.9 216 22-243 80-304 (328)
11 1xku_A Decorin; proteoglycan, 100.0 6.9E-29 2.4E-33 195.2 22.2 228 1-236 54-283 (330)
12 3zyj_A Leucine-rich repeat-con 100.0 3.8E-29 1.3E-33 204.0 20.1 226 1-229 66-292 (440)
13 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.8E-34 197.7 16.2 228 1-230 30-262 (306)
14 2ft3_A Biglycan; proteoglycan, 100.0 8.2E-29 2.8E-33 195.0 21.1 238 1-243 56-323 (332)
15 3zyi_A Leucine-rich repeat-con 100.0 4E-29 1.4E-33 204.5 20.0 226 1-229 77-303 (452)
16 3t6q_A CD180 antigen; protein- 100.0 7.9E-29 2.7E-33 209.7 21.8 240 2-242 257-526 (606)
17 3t6q_A CD180 antigen; protein- 100.0 6.6E-29 2.2E-33 210.2 21.0 240 2-243 304-550 (606)
18 1ozn_A Reticulon 4 receptor; N 100.0 5.2E-29 1.8E-33 192.1 17.7 224 3-230 15-239 (285)
19 2z80_A TOLL-like receptor 2, v 100.0 1.9E-29 6.4E-34 200.2 14.9 230 1-232 54-317 (353)
20 3o6n_A APL1; leucine-rich repe 100.0 1.1E-28 3.7E-33 198.4 19.4 227 1-232 71-334 (390)
21 2z66_A Variable lymphocyte rec 100.0 1E-28 3.6E-33 192.2 17.8 237 2-243 10-251 (306)
22 1ozn_A Reticulon 4 receptor; N 100.0 2E-28 6.9E-33 188.8 19.2 236 1-238 34-270 (285)
23 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-28 4.6E-33 210.9 19.6 242 1-243 27-299 (680)
24 1xku_A Decorin; proteoglycan, 100.0 9.8E-28 3.4E-32 188.7 22.4 235 1-243 78-322 (330)
25 3zyi_A Leucine-rich repeat-con 100.0 6.2E-28 2.1E-32 197.5 21.6 235 3-243 58-293 (452)
26 3zyj_A Leucine-rich repeat-con 100.0 6.6E-28 2.2E-32 196.7 21.6 235 3-243 47-282 (440)
27 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5E-33 197.6 17.4 237 1-242 47-320 (390)
28 3oja_B Anopheles plasmodium-re 100.0 1.9E-28 6.5E-33 206.9 18.8 233 1-238 77-346 (597)
29 2z80_A TOLL-like receptor 2, v 100.0 2E-28 7E-33 194.3 16.3 236 4-243 36-304 (353)
30 4eco_A Uncharacterized protein 100.0 4.6E-28 1.6E-32 205.8 18.4 236 1-243 307-569 (636)
31 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-27 7.6E-32 207.5 23.2 242 1-243 50-365 (844)
32 4eco_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 209.3 14.2 236 1-243 251-539 (636)
33 3oja_B Anopheles plasmodium-re 100.0 4.6E-28 1.6E-32 204.5 17.6 237 1-242 53-326 (597)
34 3j0a_A TOLL-like receptor 5; m 100.0 7.1E-28 2.4E-32 210.7 19.3 242 1-243 26-341 (844)
35 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-27 4.2E-32 188.3 18.1 231 1-239 35-287 (332)
36 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-27 6.3E-32 201.3 19.8 107 2-108 59-166 (606)
37 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-28 1.7E-32 202.6 14.9 157 1-157 28-210 (549)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-27 1.5E-31 197.4 20.3 125 1-131 54-181 (562)
39 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-27 3E-31 199.6 21.9 241 2-242 332-586 (680)
40 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-27 4.9E-32 198.6 16.4 105 1-108 23-128 (520)
41 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-27 5.1E-32 201.9 15.1 194 44-240 347-544 (606)
42 2z62_A TOLL-like receptor 4, v 100.0 1.1E-26 3.7E-31 178.3 18.3 209 23-233 28-241 (276)
43 4ecn_A Leucine-rich repeat pro 99.9 4.3E-27 1.5E-31 204.2 17.3 234 1-242 450-755 (876)
44 2z7x_B TOLL-like receptor 1, v 99.9 8.4E-27 2.9E-31 194.0 18.5 81 1-84 47-128 (520)
45 2z63_A TOLL-like receptor 4, v 99.9 8.8E-27 3E-31 195.8 18.2 104 2-105 55-159 (570)
46 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.4E-33 191.7 7.2 226 1-241 36-263 (317)
47 1wwl_A Monocyte differentiatio 99.9 3.5E-28 1.2E-32 189.8 7.7 222 2-230 66-310 (312)
48 4fmz_A Internalin; leucine ric 99.9 4.9E-26 1.7E-30 180.1 20.0 226 1-243 90-336 (347)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-26 1.1E-30 192.1 19.7 81 1-84 78-159 (562)
50 3oja_A Leucine-rich immune mol 99.9 6.7E-28 2.3E-32 198.6 9.2 225 1-240 36-262 (487)
51 4ecn_A Leucine-rich repeat pro 99.9 5.7E-26 2E-30 197.1 20.9 234 1-243 550-809 (876)
52 2z81_A CD282 antigen, TOLL-lik 99.9 5.6E-27 1.9E-31 196.2 13.5 119 1-119 52-172 (549)
53 3rfs_A Internalin B, repeat mo 99.9 2.7E-26 9.3E-31 175.7 15.7 222 6-241 26-247 (272)
54 1wwl_A Monocyte differentiatio 99.9 7.7E-28 2.6E-32 187.8 6.2 232 2-243 46-299 (312)
55 4fmz_A Internalin; leucine ric 99.9 1.6E-25 5.3E-30 177.2 19.2 227 1-243 68-314 (347)
56 2o6q_A Variable lymphocyte rec 99.9 6E-25 2.1E-29 168.0 21.2 200 2-205 19-218 (270)
57 2o6q_A Variable lymphocyte rec 99.9 7.4E-25 2.5E-29 167.5 21.5 204 24-231 17-220 (270)
58 2z63_A TOLL-like receptor 4, v 99.9 6E-26 2E-30 190.7 16.7 176 1-177 30-210 (570)
59 2z62_A TOLL-like receptor 4, v 99.9 8.1E-26 2.8E-30 173.4 15.7 205 1-207 30-239 (276)
60 3o53_A Protein LRIM1, AGAP0063 99.9 4E-27 1.4E-31 184.1 8.3 225 4-243 15-240 (317)
61 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-25 8.7E-30 188.9 19.7 107 1-107 54-160 (635)
62 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-24 7.1E-29 183.3 21.8 107 1-107 78-185 (635)
63 1o6v_A Internalin A; bacterial 99.9 2.1E-24 7E-29 177.3 20.3 56 1-60 70-125 (466)
64 1o6v_A Internalin A; bacterial 99.9 2.3E-24 7.7E-29 177.0 20.2 99 1-107 48-146 (466)
65 3oja_A Leucine-rich immune mol 99.9 6.7E-26 2.3E-30 186.7 11.1 210 19-243 30-240 (487)
66 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-24 1.8E-28 174.1 22.0 214 1-240 44-257 (457)
67 1p9a_G Platelet glycoprotein I 99.9 2.1E-24 7.3E-29 166.5 18.5 196 2-205 13-208 (290)
68 3rfs_A Internalin B, repeat mo 99.9 1.9E-24 6.7E-29 165.4 16.5 205 1-217 43-247 (272)
69 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.4E-28 162.1 18.2 204 18-229 5-208 (290)
70 2xwt_C Thyrotropin receptor; s 99.9 5.5E-24 1.9E-28 159.8 15.3 198 23-227 31-237 (239)
71 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-23 1.2E-27 169.2 21.2 183 1-207 66-248 (457)
72 4glp_A Monocyte differentiatio 99.9 1.2E-24 4.1E-29 169.6 11.3 203 21-230 89-308 (310)
73 2xwt_C Thyrotropin receptor; s 99.9 9.6E-24 3.3E-28 158.5 15.6 192 47-242 31-231 (239)
74 1h6u_A Internalin H; cell adhe 99.9 2.4E-23 8.3E-28 162.0 16.7 195 19-230 37-231 (308)
75 2ast_B S-phase kinase-associat 99.9 3.3E-25 1.1E-29 174.6 3.5 232 1-238 72-315 (336)
76 2ast_B S-phase kinase-associat 99.9 2E-25 7E-30 175.8 1.7 235 2-242 50-298 (336)
77 3m19_A Variable lymphocyte rec 99.9 2.8E-22 9.6E-27 151.6 18.6 181 23-207 14-194 (251)
78 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 4.1E-30 180.4 -1.0 232 1-232 34-319 (386)
79 3goz_A Leucine-rich repeat-con 99.9 4.8E-25 1.6E-29 175.4 2.5 231 1-231 24-299 (362)
80 4glp_A Monocyte differentiatio 99.9 2E-23 7E-28 162.6 10.3 199 1-206 93-308 (310)
81 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.6E-29 172.3 4.2 228 3-230 2-267 (362)
82 3m19_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 148.9 18.7 178 2-182 17-194 (251)
83 1h6u_A Internalin H; cell adhe 99.9 6.9E-22 2.3E-26 153.8 16.8 189 1-206 43-231 (308)
84 3g06_A SSPH2 (leucine-rich rep 99.9 1E-21 3.5E-26 165.4 16.9 62 167-234 241-302 (622)
85 3g06_A SSPH2 (leucine-rich rep 99.9 9.9E-21 3.4E-25 159.5 22.6 211 2-243 43-287 (622)
86 1jl5_A Outer protein YOPM; leu 99.9 5.4E-22 1.9E-26 162.0 13.6 208 1-229 13-250 (454)
87 1jl5_A Outer protein YOPM; leu 99.9 4.8E-21 1.7E-25 156.4 18.5 87 144-239 318-421 (454)
88 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.6E-29 173.0 -2.7 228 15-243 24-306 (386)
89 1z7x_W Ribonuclease inhibitor; 99.9 6E-25 2E-29 180.2 -6.2 211 21-231 168-413 (461)
90 4ay9_X Follicle-stimulating ho 99.9 1.2E-20 4.2E-25 149.3 18.7 232 3-243 13-249 (350)
91 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-24 3.6E-29 178.7 -5.6 83 2-84 88-183 (461)
92 2o6s_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 140.7 14.5 193 26-233 10-202 (208)
93 4ay9_X Follicle-stimulating ho 99.9 1.9E-20 6.3E-25 148.3 17.2 220 1-226 32-256 (350)
94 2o6s_A Variable lymphocyte rec 99.9 1.6E-20 5.5E-25 138.0 15.4 158 23-187 28-185 (208)
95 1h6t_A Internalin B; cell adhe 99.8 2E-20 6.8E-25 144.4 13.7 173 19-206 42-214 (291)
96 3cvr_A Invasion plasmid antige 99.8 4E-20 1.4E-24 154.1 14.7 186 24-238 60-252 (571)
97 1h6t_A Internalin B; cell adhe 99.8 6.8E-20 2.3E-24 141.4 13.7 194 23-233 24-217 (291)
98 3cvr_A Invasion plasmid antige 99.8 1.3E-19 4.4E-24 151.1 16.0 186 1-215 61-253 (571)
99 1m9s_A Internalin B; cell inva 99.8 2.8E-20 9.7E-25 156.4 11.6 173 19-206 39-211 (605)
100 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.6E-24 151.0 14.5 199 21-236 19-217 (605)
101 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.1E-24 142.8 12.7 176 26-205 21-202 (361)
102 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 129.7 15.4 154 49-207 21-174 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 8.6E-19 3E-23 129.7 14.4 153 50-206 14-166 (220)
104 4ezg_A Putative uncharacterize 99.8 7E-19 2.4E-23 128.1 13.5 153 44-229 41-194 (197)
105 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.5E-23 128.8 14.8 134 47-180 32-165 (220)
106 4ezg_A Putative uncharacterize 99.8 8.9E-19 3.1E-23 127.5 12.3 143 92-243 41-184 (197)
107 2xot_A Amphoterin-induced prot 99.8 7.6E-19 2.6E-23 139.6 12.6 176 2-180 21-202 (361)
108 3sb4_A Hypothetical leucine ri 99.8 1.1E-19 3.8E-24 142.6 7.5 100 141-243 224-324 (329)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 126.7 14.4 151 27-180 15-166 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 8E-23 127.4 13.5 154 50-207 14-168 (220)
111 1xeu_A Internalin C; cellular 99.8 2.5E-19 8.7E-24 136.2 8.3 171 21-207 17-187 (263)
112 3e6j_A Variable lymphocyte rec 99.8 8.6E-18 2.9E-22 125.2 15.6 153 26-182 22-174 (229)
113 3ogk_B Coronatine-insensitive 99.8 1.5E-20 5.3E-25 158.5 -3.0 95 141-235 434-532 (592)
114 1xeu_A Internalin C; cellular 99.8 7.4E-18 2.5E-22 128.1 11.3 163 3-180 23-185 (263)
115 4fdw_A Leucine rich hypothetic 99.7 1.7E-16 6E-21 127.3 18.2 219 11-240 146-369 (401)
116 3ogk_B Coronatine-insensitive 99.7 5.9E-20 2E-24 155.0 -2.8 103 1-104 140-252 (592)
117 2ell_A Acidic leucine-rich nuc 99.7 5.2E-17 1.8E-21 115.1 11.4 136 95-234 24-164 (168)
118 1dce_A Protein (RAB geranylger 99.7 8.3E-20 2.8E-24 152.7 -3.8 182 44-233 346-550 (567)
119 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.1E-24 150.3 -3.6 196 20-223 346-567 (567)
120 2ell_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 114.0 10.4 134 21-156 22-160 (168)
121 4b8c_D Glucose-repressible alc 99.7 7.8E-18 2.7E-22 144.8 5.1 180 39-229 216-404 (727)
122 1w8a_A SLIT protein; signaling 99.7 4.7E-16 1.6E-20 112.6 11.8 131 73-207 10-141 (192)
123 4fdw_A Leucine rich hypothetic 99.7 2.5E-15 8.7E-20 120.6 17.0 219 1-229 159-383 (401)
124 4b8c_D Glucose-repressible alc 99.7 1.4E-17 4.8E-22 143.2 3.1 192 23-226 173-369 (727)
125 2je0_A Acidic leucine-rich nuc 99.7 1.8E-16 6.2E-21 110.1 7.8 129 21-151 15-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.7 2.8E-16 9.5E-21 109.1 8.6 126 95-224 17-148 (149)
127 2p1m_B Transport inhibitor res 99.7 6.2E-19 2.1E-23 148.8 -6.0 137 94-231 371-521 (594)
128 1w8a_A SLIT protein; signaling 99.7 1.7E-15 6E-20 109.6 12.3 130 26-158 11-141 (192)
129 2wfh_A SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 108.2 13.0 127 74-205 13-139 (193)
130 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 106.8 12.8 132 72-207 8-139 (177)
131 3sb4_A Hypothetical leucine ri 99.6 4.9E-15 1.7E-19 116.2 12.8 197 22-223 100-328 (329)
132 2p1m_B Transport inhibitor res 99.6 3E-18 1E-22 144.6 -6.1 85 21-105 103-194 (594)
133 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 104.0 12.7 130 49-181 9-138 (177)
134 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4E-19 105.2 13.0 127 26-156 13-139 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-15 1.1E-19 106.6 8.0 109 67-180 15-126 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 9.7E-15 3.3E-19 104.2 9.6 132 91-229 15-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.6E-21 115.6 -3.6 132 90-229 43-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 5E-21 115.9 -4.5 153 21-180 16-185 (198)
139 3g39_A Variable lymphocyte rec 99.5 2.6E-13 8.9E-18 96.1 11.0 106 97-206 11-116 (170)
140 2r9u_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 95.1 11.0 105 98-206 15-119 (174)
141 3g39_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 93.4 10.9 103 26-131 12-114 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 91.7 10.9 104 26-132 15-118 (174)
143 4gt6_A Cell surface protein; l 99.4 2.8E-11 9.7E-16 97.1 17.2 99 139-242 261-359 (394)
144 3un9_A NLR family member X1; l 99.4 4.8E-15 1.7E-19 117.8 -5.5 184 46-229 71-283 (372)
145 3un9_A NLR family member X1; l 99.3 8.4E-15 2.9E-19 116.5 -5.7 166 70-236 71-259 (372)
146 4fs7_A Uncharacterized protein 99.3 2.1E-11 7.1E-16 97.9 13.6 216 16-243 155-391 (394)
147 4fs7_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 96.0 15.4 216 16-243 133-369 (394)
148 4gt6_A Cell surface protein; l 99.3 1.9E-10 6.7E-15 92.2 15.6 112 113-229 259-370 (394)
149 4h09_A Hypothetical leucine ri 99.2 2.6E-09 8.7E-14 85.2 19.5 100 136-239 256-355 (379)
150 2ifg_A High affinity nerve gro 99.2 8.7E-11 3E-15 92.6 9.0 103 3-108 12-116 (347)
151 2ifg_A High affinity nerve gro 99.2 1E-10 3.6E-15 92.1 9.3 104 99-206 12-117 (347)
152 2ra8_A Uncharacterized protein 99.1 6.9E-11 2.4E-15 93.4 6.7 64 142-205 251-320 (362)
153 2ra8_A Uncharacterized protein 99.1 5.3E-11 1.8E-15 94.0 4.8 180 19-203 135-341 (362)
154 4h09_A Hypothetical leucine ri 99.1 3.2E-08 1.1E-12 78.9 19.7 123 89-216 234-356 (379)
155 3e4g_A ATP synthase subunit S, 98.6 1.1E-08 3.6E-13 71.9 1.8 85 119-204 61-151 (176)
156 1io0_A Tropomodulin; LRR prote 98.6 4.6E-09 1.6E-13 75.1 -0.5 89 140-229 62-164 (185)
157 3e4g_A ATP synthase subunit S, 98.6 3.6E-08 1.2E-12 69.2 3.7 84 47-130 61-150 (176)
158 1io0_A Tropomodulin; LRR prote 98.5 2.1E-08 7.2E-13 71.7 0.7 65 44-108 33-106 (185)
159 3rw6_A Nuclear RNA export fact 98.3 9E-07 3.1E-11 66.6 5.2 82 140-222 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.7E-11 65.2 4.4 80 44-125 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 3E-05 1E-09 55.4 1.0 90 139-228 66-169 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.0016 5.5E-08 43.3 5.9 57 146-205 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00031 1.1E-08 50.1 1.9 63 46-108 40-111 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0039 1.3E-07 41.4 6.0 56 27-84 12-68 (130)
165 2lz0_A Uncharacterized protein 91.0 0.99 3.4E-05 28.1 6.4 44 108-152 9-52 (100)
166 2lz0_A Uncharacterized protein 86.2 1.3 4.5E-05 27.5 4.5 46 10-56 7-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-34 Score=224.26 Aligned_cols=239 Identities=30% Similarity=0.484 Sum_probs=216.3
Q ss_pred CcEEecCCCCCcc--ccCCccCCcccccEEEccc-CcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEE
Q 040632 1 VTALNLSDMGLGG--TIPRHLGNLSFLVSLDISE-NNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILR 77 (243)
Q Consensus 1 l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (243)
++.|+++++.+.+ .+|..+.++++|++|++++ +.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4689999999998 8899999999999999995 888888999999999999999999999878888999999999999
Q ss_pred ccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCC-CccEEeecCCCccccCCccccCCCcccEEEccccccC
Q 040632 78 LNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLS-KLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLS 156 (243)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 156 (243)
+++|.+.+..|..+..+++|++|++++|.+++..|..++.+. +|+++++++|.++...|..+..++ |++|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 999999988899999999999999999999878888899988 999999999999877888888876 999999999998
Q ss_pred CCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCccc
Q 040632 157 GLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 236 (243)
+..+..+..+++|+.|++++|.+++..+. + ..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.+|..
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 88888899999999999999999854444 3 36899999999999999889999999999999999999999888875
Q ss_pred CCCCCCC
Q 040632 237 GNLRHLD 243 (243)
Q Consensus 237 ~~l~~L~ 243 (243)
..+++|+
T Consensus 288 ~~l~~L~ 294 (313)
T 1ogq_A 288 GNLQRFD 294 (313)
T ss_dssp TTGGGSC
T ss_pred ccccccC
Confidence 6666653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-33 Score=240.73 Aligned_cols=242 Identities=36% Similarity=0.564 Sum_probs=156.6
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+++..|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 34566666666666666666667777777777766666666666667777777776666666666666666777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+....|..+..+++|+.|++++|.+++.+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 66666666666666677777777666666666666666666777766666665566666666666666666665554433
Q ss_pred ccc----------------------------------------------------------------------ccCCccc
Q 040632 161 PTI----------------------------------------------------------------------FNISTLW 170 (243)
Q Consensus 161 ~~~----------------------------------------------------------------------~~~~~L~ 170 (243)
..+ ..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 221 1234566
Q ss_pred EEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 171 LLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 171 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.|++++|.+++.+|..+. +++.|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..|.++++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp EEECCSSCCBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred EEECcCCcccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 666666666666666655 466666666666666666666666666666666666666666666666665553
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-32 Score=235.97 Aligned_cols=243 Identities=37% Similarity=0.565 Sum_probs=217.2
Q ss_pred CcEEecCCCCCccccCCccCC--cccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEc
Q 040632 1 VTALNLSDMGLGGTIPRHLGN--LSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRL 78 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 78 (243)
|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 456777777777666666555 778888888888888888888999999999999999998888899999999999999
Q ss_pred cCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC
Q 040632 79 NNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.++...|..+..+++|++|++++|.+++.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 99999988899999999999999999999888888899999999999999999888899999999999999999999988
Q ss_pred CCcccccCCcccEEEeeccccCCCCChhhhc-------------------------------------------------
Q 040632 159 IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH------------------------------------------------- 189 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------------------------------------- 189 (243)
+|..+..+++|+.|++++|.+++.+|..++.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 9999999999999999999998777765432
Q ss_pred --------------------CCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 190 --------------------SLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 190 --------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.+++|++|++++|.+++.+|..+..++.|+.|++++|.+++.+|+.|+++++||
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 683 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCC
Confidence 235788999999999999999999999999999999999999999999999886
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-31 Score=217.57 Aligned_cols=241 Identities=20% Similarity=0.193 Sum_probs=173.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 57899999999888788899999999999999999888888999999999999999988865556778899999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++.+|.++...+..+..+++|+.|++++|.+....+
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 98886667778888899999998888877777778888888888888887765444556666666666666665554333
Q ss_pred cccccCC------------------------cccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCC
Q 040632 161 PTIFNIS------------------------TLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNAT 216 (243)
Q Consensus 161 ~~~~~~~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (243)
..+..++ +|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..++
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 3333333 4444445555555 45544444566666666666666555444555555
Q ss_pred cccEEecCCCcccccCCcccCCCCCC
Q 040632 217 KLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 217 ~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+|+.|++++|.+++..+..|..+++|
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred cCCEEECCCCccceECHHHhcCcccC
Confidence 55566655555555555555555544
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1e-30 Score=214.12 Aligned_cols=107 Identities=24% Similarity=0.321 Sum_probs=73.3
Q ss_pred CccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccC
Q 040632 136 PTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA 215 (243)
Q Consensus 136 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 215 (243)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..|..+..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 444555667777777777766555666667777777777777776 4443333467777777777777776667777777
Q ss_pred CcccEEecCCCcccccCCcccCCCCCCC
Q 040632 216 TKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
++|+.|++++|++++.++..|..+++|+
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccEEECCCCccccCCHhHhccCCccc
Confidence 7777788877777766666666766664
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=5.2e-31 Score=215.86 Aligned_cols=242 Identities=21% Similarity=0.228 Sum_probs=168.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCccc-ccCCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFH-GHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
+++|++++|.+++..+..|.++++|++|+++++.+. ...+..|..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 467888888887776777777888888888877765 3445667777777788877777765556677777777777777
Q ss_pred CcccccCCchh--hhccCCccEEEeecccCCccCCCc-cCCCCCccEEeecCCCccccCCccccC---------------
Q 040632 80 NNSFTGPIPNS--LFNLSRLEMLRAQSNIIGGTIPSR-IGNLSKLVNLGLAFNNLQGEIPTEIGN--------------- 141 (243)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~~~~~~~~--------------- 141 (243)
+|.+.+..+.. +..+++|++|++++|.+....+.. ++.+++|++|++++|.+....+..+..
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 77766433333 666677777777777666554544 566666777777666654333322211
Q ss_pred -------------------CC-----------------------------------------------------------
Q 040632 142 -------------------LE----------------------------------------------------------- 143 (243)
Q Consensus 142 -------------------~~----------------------------------------------------------- 143 (243)
++
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 12
Q ss_pred ----cccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCccc
Q 040632 144 ----NLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 144 ----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
+|+++++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 445555555555544556677778888888888888733344444 688888999998888777777788888899
Q ss_pred EEecCCCcccccCCcccCCCCCCC
Q 040632 220 ALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 220 ~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.|++++|.+++..|..|..+++|+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCcccccChhhcccccccc
Confidence 999999988887788888888775
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-31 Score=209.21 Aligned_cols=226 Identities=29% Similarity=0.436 Sum_probs=206.0
Q ss_pred CcEEecCC-CCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSD-MGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
|+.|++++ +.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 57899995 89998999999999999999999999998899999999999999999999998889999999999999999
Q ss_pred CcccccCCchhhhccC-CccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC
Q 040632 80 NNSFTGPIPNSLFNLS-RLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
+|.+.+..|..+..++ .|++|++++|.+.+..+..++.+. |++|++++|.+....+..+..+++|+.|++++|.+++.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9999988899999998 999999999999878888888887 99999999999877888899999999999999999866
Q ss_pred CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCc-ccc
Q 040632 159 IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNS-FSG 230 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~ 230 (243)
.+. +..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. ..+++|+.+++++|+ +.+
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 544 67789999999999999988888776 6999999999999999888875 889999999999998 554
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3e-30 Score=202.60 Aligned_cols=222 Identities=25% Similarity=0.289 Sum_probs=128.0
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.|+++++.++ .+|..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 45566666655 44555555666666666666655 45555566666666666666655 44555666666666666665
Q ss_pred ccccCCchhhhc---------cCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccc
Q 040632 82 SFTGPIPNSLFN---------LSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGE 152 (243)
Q Consensus 82 ~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 152 (243)
...+..|..+.. +++|++|++++|.++ ..|..++.+++|++|++++|.+. ..+..+..+++|++|++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence 544455544332 556666666666555 44555555666666666666555 3444455556666666666
Q ss_pred cccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 153 NNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
|.+.+..|..+..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 655555555555566666666666555545555544 4566666666666655555666666666666665554443
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=213.57 Aligned_cols=242 Identities=19% Similarity=0.198 Sum_probs=172.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 56788888888877777788888888888888888766666677788888888888777655566666777777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccC-------------------
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGN------------------- 141 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~------------------- 141 (243)
|.+....+..+..+++|+.|++.+|.++...+..+..+++|+.|++.+|.+....+..+..
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 7666555555666666666666666555433333445555555555555443332223333
Q ss_pred -----CCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCC
Q 040632 142 -----LENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNAT 216 (243)
Q Consensus 142 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (243)
..+|++|++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 335666666666666443346778889999999999988 55555455788999999999999887788889999
Q ss_pred cccEEecCCCcccccCCcccCCCCCCC
Q 040632 217 KLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 217 ~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
+|+.|++++|.+++..+..|..+++|+
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccC
Confidence 999999999999977777788877764
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.2e-29 Score=199.27 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=196.6
Q ss_pred cccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEE
Q 040632 22 LSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLR 101 (243)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 101 (243)
.+.++.|+++++.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999998 66777888999999999999998 78888999999999999999999 7888999999999999
Q ss_pred eecccCCccCCCccCC---------CCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEE
Q 040632 102 AQSNIIGGTIPSRIGN---------LSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLL 172 (243)
Q Consensus 102 l~~~~~~~~~~~~l~~---------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 172 (243)
+++|......|..+.. +++|++|++++|.++ ..|..+..+++|++|++++|.+++ ++..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9998777677776654 899999999999998 788889999999999999999985 56778899999999
Q ss_pred EeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 173 NLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.|.++++|+
T Consensus 235 ~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 9999998878887766 689999999999999889999999999999999999999999999999998874
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.9e-29 Score=195.23 Aligned_cols=228 Identities=20% Similarity=0.261 Sum_probs=142.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++|.+. .+|..+. ++|++|++++
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCC
Confidence 467889999988777778889999999999999988787888999999999999988877 3444332 6777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCc--cCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGG--TIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+++++++|.++ ..+..+. ++|++|++++|.+++.
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEE
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCcc
Confidence 77665445556667777777777666542 34445556666666666666554 2222221 4555555555555544
Q ss_pred CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCccc
Q 040632 159 IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 236 (243)
.+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 4445555555555555555555 222222224555555555555554 344445555555555555555554444444
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=204.03 Aligned_cols=226 Identities=23% Similarity=0.233 Sum_probs=177.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.++...+..|.++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 46788888888877777888888888888888888877777888888888888888888765556788888888888888
Q ss_pred cccccCCchhhhccCCccEEEeecc-cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSN-IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 159 (243)
|.+....+..+..+++|++|+++++ .+....+..+..+++|++|++++|.++ ..+ .+..+++|++|++++|.+++..
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEEC
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccC
Confidence 8888555566788888888888874 444444556778888888888888876 444 4677788888888888888777
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
+..+..+++|+.|++++|.++ .++...+.++++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777888888888888888887 444444446888888888888888666667788888888888888764
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-29 Score=197.73 Aligned_cols=228 Identities=22% Similarity=0.241 Sum_probs=162.2
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCccccc--CCCCccccccccEEEecccccCCCccccccCCCCccEEEc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGH--LPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRL 78 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 78 (243)
+++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence 46677777777754445567777788888877776532 2444556777788888777766 45556777788888888
Q ss_pred cCcccccCCc-hhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccc-cCCccccCCCcccEEEccccccC
Q 040632 79 NNNSFTGPIP-NSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQG-EIPTEIGNLENLEVLVLGENNLS 156 (243)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 156 (243)
++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 8877774333 456777788888888777776666667777788888888777764 35666777778888888888777
Q ss_pred CCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCC-cccEEecCCCcccc
Q 040632 157 GLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNAT-KLIALDLGSNSFSG 230 (243)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~ 230 (243)
+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|+++.
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666667777778888888888777 44443344677888888888887776676777764 78888888887764
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.2e-29 Score=194.98 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=161.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+. .+|..+. ++|++|++++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence 467888888888777778888889999999988888777888888888999998888877 4454443 7888888888
Q ss_pred cccccCCchhhhccCCccEEEeecccCCc--cCCCccCCC--------------------CCccEEeecCCCccccCCcc
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGG--TIPSRIGNL--------------------SKLVNLGLAFNNLQGEIPTE 138 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~--------------------~~L~~l~l~~~~~~~~~~~~ 138 (243)
|.+....+..+..+++|+.|++++|.++. ..+..+..+ ++|++|++++|.++...+..
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence 88875555567788888888888887642 333444333 34555555555555444455
Q ss_pred ccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCccccc----
Q 040632 139 IGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITN---- 214 (243)
Q Consensus 139 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---- 214 (243)
+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..+..+..
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhHccccccc
Confidence 666666777777777666555555666667777777777766 6666544 4667777777777666544444433
Q ss_pred --CCcccEEecCCCccc--ccCCcccCCCCCCC
Q 040632 215 --ATKLIALDLGSNSFS--GHIPNTFGNLRHLD 243 (243)
Q Consensus 215 --~~~L~~l~l~~~~~~--~~~~~~~~~l~~L~ 243 (243)
.+.|+.+++++|++. +..+..|..+++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred cccccccceEeecCcccccccCcccccccchhh
Confidence 345667777777665 45555666666553
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4e-29 Score=204.53 Aligned_cols=226 Identities=22% Similarity=0.228 Sum_probs=173.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++..+..|.++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 46788888888877777788888888888888888877777888888888888888887755566677788888888888
Q ss_pred cccccCCchhhhccCCccEEEeecc-cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSN-IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 159 (243)
|.+....+..+..+++|+.|+++++ .+....+..+..+++|++|++++|.++ ..+ .+..+++|++|++++|.+++..
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEEC
T ss_pred CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccC
Confidence 8887555556778888888888874 444444456777888888888888876 333 4667778888888888887776
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
+..+..+++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777788888888888888887 444333446788888888888887666666777888888888888765
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.9e-29 Score=209.71 Aligned_cols=240 Identities=22% Similarity=0.233 Sum_probs=135.8
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.+++++|.+++..+..|.++++|++|++++|.++ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 56777777777666666777777777777777776 55666777777777777777766554555666666666666666
Q ss_pred ccccCCch-hhhccCCccEEEeecccCCccC--CCccCCCCCccEEeecCCCccccCCcccc------------------
Q 040632 82 SFTGPIPN-SLFNLSRLEMLRAQSNIIGGTI--PSRIGNLSKLVNLGLAFNNLQGEIPTEIG------------------ 140 (243)
Q Consensus 82 ~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~------------------ 140 (243)
.+....+. .+..+++|++|++++|.+.... +..++.+++|+++++++|.+....+..+.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 55433332 2455555555555555544322 33444455555555555544433333444
Q ss_pred -------CCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCC-CC-hhhhcCCCCccEEEcccCccccccCcc
Q 040632 141 -------NLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGH-LP-STIGHSLRNIEYLTLSSNNLMGTIPNS 211 (243)
Q Consensus 141 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 211 (243)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ++ ...+..+++|++|++++|.+.+..|..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 444555555555554444444445555555555555555421 11 111224555666666666555555555
Q ss_pred cccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 212 ITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 212 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+..+++|+.|++++|++++..|..|.++++|
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc
Confidence 5666666666666666665555555555543
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.6e-29 Score=210.20 Aligned_cols=240 Identities=22% Similarity=0.160 Sum_probs=173.2
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCccccc-CCCCccccccccEEEecccccCCCc--cccccCCCCccEEEc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGH-LPKELGQLRRLRVMRFAYNKLSGSF--PSWIGVLSKLRILRL 78 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l 78 (243)
+.|++++|.+.+..+..+.++++|++|++++|.+... .+..+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 3444444444443344444444444444444444322 2233555566666666666554332 445666777777777
Q ss_pred cCcccccCCchhhhccCCccEEEeecccCCccCC-CccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCC
Q 040632 79 NNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIP-SRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSG 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 157 (243)
++|.+....+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 7777765566677777888888888887764443 347788899999999998886777888999999999999999875
Q ss_pred C---CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCc
Q 040632 158 L---IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 158 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
. .+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..++.| .|++++|.+++.+|.
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred cccccchhhccCCCccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 2 235678899999999999999844455544 79999999999999998889999999999 999999999988888
Q ss_pred ccCCCCCCC
Q 040632 235 TFGNLRHLD 243 (243)
Q Consensus 235 ~~~~l~~L~ 243 (243)
.|..+++|+
T Consensus 542 ~~~~l~~L~ 550 (606)
T 3t6q_A 542 LLPILSQQR 550 (606)
T ss_dssp GHHHHHTSS
T ss_pred hcccCCCCC
Confidence 777766653
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.2e-29 Score=192.08 Aligned_cols=224 Identities=21% Similarity=0.197 Sum_probs=151.3
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcc
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS 82 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (243)
+++.+++.++. +|.. -.++++.|+++++.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45555555553 3322 24577777777777776666667777777777777777665556667777777777777775
Q ss_pred -cccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 83 -FTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 83 -~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
+....+..+..+++|++|++.+|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 5544456667777777777777777665566677777777777777777644555566777777777777777655445
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccc
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 566677777777777777643344444 56777777777777775555556777777777777776653
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=200.23 Aligned_cols=230 Identities=21% Similarity=0.239 Sum_probs=170.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence 57788888888876666788888999999988888877778888888899999988888855555578888899999988
Q ss_pred cccccCCch--hhhccCCccEEEeecc-cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCC
Q 040632 81 NSFTGPIPN--SLFNLSRLEMLRAQSN-IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSG 157 (243)
Q Consensus 81 ~~~~~~~~~--~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 157 (243)
|.+. .++. .+..+++|++|++++| .+....+..++.+++|+++++++|.+....+..+..+++|++|++++|.+..
T Consensus 134 n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 134 NPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp CCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 8888 4443 6778888899988888 4665556678888888888888888876667788888888888888888764
Q ss_pred CCCcccccCCcccEEEeeccccCCCCC-------------------------------hhhhcCCCCccEEEcccCcccc
Q 040632 158 LIPPTIFNISTLWLLNLFGNQLSGHLP-------------------------------STIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------------------~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
.....+..+++|++|++++|.+++..+ ..+ ..+++|++|++++|.+++
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSRNQLKS 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH-HTCTTCCEEECCSSCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH-hcccCCCEEECCCCCCCc
Confidence 322233457788888888888774221 112 245667777777777663
Q ss_pred ccCcccccCCcccEEecCCCcccccC
Q 040632 207 TIPNSITNATKLIALDLGSNSFSGHI 232 (243)
Q Consensus 207 ~~~~~~~~~~~L~~l~l~~~~~~~~~ 232 (243)
..+..+..+++|+.|++++|++.+..
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 33333466677777777777666443
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-28 Score=198.40 Aligned_cols=227 Identities=22% Similarity=0.183 Sum_probs=136.9
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC
Confidence 46677777777665556677777777777777777766666677777777777777776643334456677777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCC-------------------------------------CCCccE
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGN-------------------------------------LSKLVN 123 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-------------------------------------~~~L~~ 123 (243)
|.+....+..+..+++|++|++++|.++......+.. ..+|+.
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 7776555555666777777777776655321111111 112333
Q ss_pred EeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCc
Q 040632 124 LGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN 203 (243)
Q Consensus 124 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (243)
|++++|.++. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.... .+++|++|++++|.
T Consensus 231 L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNH 306 (390)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSC
T ss_pred EECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCc
Confidence 3333333321 123455566666666666666555556666666666666666665 4443332 46667777777776
Q ss_pred cccccCcccccCCcccEEecCCCcccccC
Q 040632 204 LMGTIPNSITNATKLIALDLGSNSFSGHI 232 (243)
Q Consensus 204 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 232 (243)
+. .+|..+..+++|+.|++++|++++..
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred ce-ecCccccccCcCCEEECCCCccceeC
Confidence 65 34445566667777777777766443
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=192.25 Aligned_cols=237 Identities=21% Similarity=0.257 Sum_probs=199.1
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCC--ccccccCCCCccEEEcc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS--FPSWIGVLSKLRILRLN 79 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 79 (243)
+.++.+++.++ .+|..+ .++++.|+++++.++...+..|..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35677777776 344433 36899999999999877667789999999999999988632 24566779999999999
Q ss_pred CcccccCCchhhhccCCccEEEeecccCCccCC-CccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCC-
Q 040632 80 NNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIP-SRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSG- 157 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 157 (243)
+|.+. .++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99988 567778899999999999998875544 568899999999999999987777888899999999999999875
Q ss_pred CCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccC
Q 040632 158 LIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFG 237 (243)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 237 (243)
..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 4678888999999999999999844344444 789999999999999877777789999999999999999998888888
Q ss_pred CCC-CCC
Q 040632 238 NLR-HLD 243 (243)
Q Consensus 238 ~l~-~L~ 243 (243)
.++ +|+
T Consensus 245 ~~~~~L~ 251 (306)
T 2z66_A 245 HFPSSLA 251 (306)
T ss_dssp CCCTTCC
T ss_pred hhhccCC
Confidence 874 553
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2e-28 Score=188.78 Aligned_cols=236 Identities=20% Similarity=0.216 Sum_probs=199.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccc-cCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNK-LSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~ 79 (243)
+++|+++++.+++..+..|.++++|++|+++++.++...+..|..+++|++|++++|. +....+..+..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 5789999999998777889999999999999999998889999999999999999997 776667889999999999999
Q ss_pred CcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCC
Q 040632 80 NNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 159 (243)
+|.+....+..+..+++|++|++++|.+....+..++.+++|++|++++|.++...+..+..+++|++|++++|.+++..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 99999766778899999999999999998766677889999999999999998566667888999999999999998887
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCC
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGN 238 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 238 (243)
+..+..+++|+.|++++|.++ .++...+..+++|++|++++|++...-+. ......++.+..+.+.+....|+.+.+
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred HhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 888999999999999999998 67766555799999999999999743221 112233555666677777666665543
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.4e-28 Score=210.86 Aligned_cols=242 Identities=25% Similarity=0.214 Sum_probs=194.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+++..+..|.++++|++|+++++.+.+..+.+|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 57899999999887777899999999999999999988888899999999999999998855555789999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccc--cCCCcccEEEccccccCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEI--GNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~ 158 (243)
|.+....+..+.++++|++|++++|.+....+..++.+++|++|++++|.++...+..+ ..+++|++|++++|.+.+.
T Consensus 107 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 99986666778899999999999998887777888899999999999998875555443 3557899999999988766
Q ss_pred CCcccccC---------------------------CcccEEEeeccccCCCCChhhhcCC--CCccEEEcccCccccccC
Q 040632 159 IPPTIFNI---------------------------STLWLLNLFGNQLSGHLPSTIGHSL--RNIEYLTLSSNNLMGTIP 209 (243)
Q Consensus 159 ~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~ 209 (243)
.+..+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+.+..+
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECT
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCc
Confidence 55554433 4566777777777644444433 34 348888888888877777
Q ss_pred cccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 210 NSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 210 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
..+..+++|+.|++++|.+++..+..|.++++|+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 7788888888888888888877777777776664
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.8e-28 Score=188.66 Aligned_cols=235 Identities=22% Similarity=0.268 Sum_probs=199.4
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+++..|..|.++++|++|++++|.++. .|..+. ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 5789999999998889999999999999999999884 444332 7899999999999866677789999999999999
Q ss_pred ccccc--CCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC
Q 040632 81 NSFTG--PIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 81 ~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
|.+.. ..+..+..+++|++|++++|.++. .+..+. ++|++|++++|.++...+..+..+++|++|++++|.+++.
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 98863 556778899999999999998874 454443 7899999999999877788899999999999999999877
Q ss_pred CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCccccc------CCcccEEecCCCcccc--
Q 040632 159 IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITN------ATKLIALDLGSNSFSG-- 230 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~l~~~~~~~-- 230 (243)
.+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..+..+.. .+.++.+++++|++..
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 7778889999999999999998 8888776 6899999999999998765555543 4788999999999864
Q ss_pred cCCcccCCCCCCC
Q 040632 231 HIPNTFGNLRHLD 243 (243)
Q Consensus 231 ~~~~~~~~l~~L~ 243 (243)
..|..|..+++++
T Consensus 310 i~~~~f~~~~~l~ 322 (330)
T 1xku_A 310 IQPSTFRCVYVRA 322 (330)
T ss_dssp SCGGGGTTCCCGG
T ss_pred cCcccccccccee
Confidence 5567787777653
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.2e-28 Score=197.46 Aligned_cols=235 Identities=22% Similarity=0.233 Sum_probs=198.8
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcc
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS 82 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (243)
.++.++..++ .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 58 ~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3444455554 344433 3689999999999998889999999999999999999987777889999999999999999
Q ss_pred cccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCc-cccCCccccCCCcccEEEccccccCCCCCc
Q 040632 83 FTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNL-QGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.. ....+..+..+++|++|++++|.++.. +
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 9966566688999999999999999877777899999999999998554 434445688899999999999999854 3
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCC
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRH 241 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 241 (243)
.+..+++|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+++.++..|..+++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 5778899999999999998 454444447999999999999999888888999999999999999999888888888887
Q ss_pred CC
Q 040632 242 LD 243 (243)
Q Consensus 242 L~ 243 (243)
|+
T Consensus 292 L~ 293 (452)
T 3zyi_A 292 LV 293 (452)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.6e-28 Score=196.69 Aligned_cols=235 Identities=21% Similarity=0.227 Sum_probs=198.9
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcc
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS 82 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (243)
.++..+..++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444455554 344433 3689999999999998888999999999999999999987777889999999999999999
Q ss_pred cccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCc-cccCCccccCCCcccEEEccccccCCCCCc
Q 040632 83 FTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNL-QGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
++...+..+..+++|++|++++|.+....+..+..+++|++|++.+|.. ....+..+..+++|++|++++|.++.. |
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-
Confidence 9955556789999999999999999877777899999999999998554 434455788899999999999999844 4
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCC
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRH 241 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 241 (243)
.+..+++|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4778899999999999998 454444447999999999999999888888999999999999999999888888888887
Q ss_pred CC
Q 040632 242 LD 243 (243)
Q Consensus 242 L~ 243 (243)
|+
T Consensus 281 L~ 282 (440)
T 3zyj_A 281 LE 282 (440)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=197.59 Aligned_cols=237 Identities=18% Similarity=0.193 Sum_probs=167.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.++++++.++...+..|.++++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 46788888888765555578999999999999999988888999999999999999999977788899999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCC------------------
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNL------------------ 142 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~------------------ 142 (243)
|.+....+..+..+++|++|++++|.+....+..++.+++|++|++++|.++......+..+
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCc
Confidence 99994434446889999999999999987777789999999999999998864322211111
Q ss_pred -------------------CcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCc
Q 040632 143 -------------------ENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN 203 (243)
Q Consensus 143 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (243)
++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNR 283 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSC
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCc
Confidence 1233444444444321 3345556666666666666533333333 46666666666666
Q ss_pred cccccCcccccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 204 LMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 204 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+.+ ++..+..+++|+.|++++|+++ .+|..+..+++|
T Consensus 284 l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 653 3444455666666666666666 344444444433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.9e-28 Score=206.89 Aligned_cols=233 Identities=22% Similarity=0.179 Sum_probs=145.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+....+..|..+++|++|++++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 46677777777766666777777777777777777766666677777777777777777644444556777777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCC----------------C---------------------CCccE
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGN----------------L---------------------SKLVN 123 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~----------------~---------------------~~L~~ 123 (243)
|.+.+..+..+..+++|++|++++|.++......+.. . .+|+.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 236 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCE
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCE
Confidence 7777555666777777777777777665321111111 1 12333
Q ss_pred EeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCc
Q 040632 124 LGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN 203 (243)
Q Consensus 124 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (243)
|++++|.++. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .++.... .+++|++|++++|.
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNH 312 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSS-CCTTCCEEECCSSC
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccc-cCCCCcEEECCCCC
Confidence 3333333321 234555666667777766666555666666667777777777666 3444333 46677777777776
Q ss_pred cccccCcccccCCcccEEecCCCcccccCCcccCC
Q 040632 204 LMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGN 238 (243)
Q Consensus 204 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 238 (243)
+. .+|..+..+++|+.|++++|.+++..+..+..
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 346 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCcChhhcCC
Confidence 66 34555666677777777777776544333333
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=194.26 Aligned_cols=236 Identities=21% Similarity=0.186 Sum_probs=196.6
Q ss_pred EecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCccc
Q 040632 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSF 83 (243)
Q Consensus 4 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (243)
.+.+++.++ .+|..+ .++|++|+++++.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 36 c~~~~~~l~-~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCS-SCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcc-cccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 455666665 345433 35899999999999988777899999999999999999876677899999999999999999
Q ss_pred ccCCchhhhccCCccEEEeecccCCccCC-CccCCCCCccEEeecCCC-ccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 84 TGPIPNSLFNLSRLEMLRAQSNIIGGTIP-SRIGNLSKLVNLGLAFNN-LQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 84 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
+...+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 95444558899999999999999885443 478899999999999984 5555667788999999999999999888788
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccccc-------------------------------Cc
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTI-------------------------------PN 210 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~ 210 (243)
.+..+++|++|++++|.++ .++......+++|++|++++|.+.+.. |.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 8999999999999999997 777776666899999999999987532 33
Q ss_pred ccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 211 SITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 211 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.+..+++|+.|++++|.+++.++..|.++++|+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 466789999999999999955445568888875
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.6e-28 Score=205.77 Aligned_cols=236 Identities=20% Similarity=0.239 Sum_probs=144.0
Q ss_pred CcEEecCCCCCccccCC--ccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCC-ccEEE
Q 040632 1 VTALNLSDMGLGGTIPR--HLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSK-LRILR 77 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~ 77 (243)
|+.|++++|.++ .+|. .+.++++|+.|++++|.+.+..| .+..+++|++|++++|.+. .+|..+..+++ |++|+
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS 383 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence 456666666666 5555 56666777777777776665555 6666666777777666666 55555666666 77777
Q ss_pred ccCcccccCCchhhhccC--CccEEEeecccCCccCCCccC-------CCCCccEEeecCCCccccCCccccCCCcccEE
Q 040632 78 LNNNSFTGPIPNSLFNLS--RLEMLRAQSNIIGGTIPSRIG-------NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVL 148 (243)
Q Consensus 78 l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~l~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 148 (243)
+++|.+. .+|..+.... +|++|++++|.+.+..|..+. .+.+|++|++++|.++...+..+..+++|++|
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 7777666 5555444333 666777776666655555555 55567777777766663222334446666777
Q ss_pred EccccccCCCCCccccc-C-------CcccEEEeeccccCCCCChhhh-cCCCCccEEEcccCccccccCcccccCCccc
Q 040632 149 VLGENNLSGLIPPTIFN-I-------STLWLLNLFGNQLSGHLPSTIG-HSLRNIEYLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 149 ~l~~~~~~~~~~~~~~~-~-------~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
++++|.++ .+|..... . ++|++|++++|.++ .+|..+. ..+++|++|++++|.+.+ +|..+..+++|+
T Consensus 463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred ECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 77666666 33332221 1 16666666666666 5665554 346666667776666664 565666666666
Q ss_pred EEec------CCCcccccCCcccCCCCCCC
Q 040632 220 ALDL------GSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 220 ~l~l------~~~~~~~~~~~~~~~l~~L~ 243 (243)
.|++ ++|.+.+.+|..|.++++|+
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCC
Confidence 6666 34555666666666666553
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=207.53 Aligned_cols=242 Identities=22% Similarity=0.167 Sum_probs=163.3
Q ss_pred CcEEecCCCCCcccc-CCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCcccc--ccCCCCccEEE
Q 040632 1 VTALNLSDMGLGGTI-PRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSW--IGVLSKLRILR 77 (243)
Q Consensus 1 l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~ 77 (243)
|+.|++++|...+.+ +..|.++++|++|++++|.+....|..|..+++|++|++++|.+.+..+.. +..+++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 466777777544444 566777777777777777777666777777777777777777766444433 66677777777
Q ss_pred ccCcccccCCc-hhhhccCCccEEEeecccCCccCC--------------------------CccCCCCC------ccEE
Q 040632 78 LNNNSFTGPIP-NSLFNLSRLEMLRAQSNIIGGTIP--------------------------SRIGNLSK------LVNL 124 (243)
Q Consensus 78 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~--------------------------~~l~~~~~------L~~l 124 (243)
+++|.+....+ ..+.++++|++|++++|.+....+ ..++.+.+ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 77776664333 456667777777777665543322 22333332 7777
Q ss_pred eecCCCccccCCccc------------------------------------cC--CCcccEEEccccccCCCCCcccccC
Q 040632 125 GLAFNNLQGEIPTEI------------------------------------GN--LENLEVLVLGENNLSGLIPPTIFNI 166 (243)
Q Consensus 125 ~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~~~~~ 166 (243)
++++|.+....+..+ .. .++|++|++++|.+.+..+..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 777775432222111 11 2568888888888776667777788
Q ss_pred CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 167 STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
++|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 290 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp CCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred CCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 88888888888887 44333334688888888888888777777888888888888888888877777787777764
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-28 Score=209.33 Aligned_cols=236 Identities=23% Similarity=0.345 Sum_probs=141.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCc-ccc-cCCCCcccc------ccccEEEecccccCCCccc--cccCC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENN-FHG-HLPKELGQL------RRLRVMRFAYNKLSGSFPS--WIGVL 70 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l 70 (243)
|+.|++++|.+.+.+|..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+. .+|. .+..+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 5678888888888888888888888888888887 765 556656555 77777777777776 5666 67777
Q ss_pred CCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCC-ccEEeecCCCccccCCccccCCC--cccE
Q 040632 71 SKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSK-LVNLGLAFNNLQGEIPTEIGNLE--NLEV 147 (243)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~-L~~l~l~~~~~~~~~~~~~~~~~--~L~~ 147 (243)
++|++|++++|.+.+.+| .+..+++|++|++++|.+. ..|..++.+++ |++|++++|.++ ..|..+.... +|++
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 777777777777665555 5555566666666666555 44444555555 555555555554 4444333322 4555
Q ss_pred EEccccccCCCCCcccc-------c------------------------CCcccEEEeeccccCCCCChhhhcCCC----
Q 040632 148 LVLGENNLSGLIPPTIF-------N------------------------ISTLWLLNLFGNQLSGHLPSTIGHSLR---- 192 (243)
Q Consensus 148 L~l~~~~~~~~~~~~~~-------~------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~---- 192 (243)
|++++|.+.+..|..+. . +++|++|++++|.++ .++...+....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK 485 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence 55555554444333333 3 444555555555554 44443332221
Q ss_pred ---CccEEEcccCccccccCcccc--cCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 193 ---NIEYLTLSSNNLMGTIPNSIT--NATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 193 ---~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
+|++|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+.++++|+
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 5555555555555 3444443 56666666666666664 555555555553
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.6e-28 Score=204.53 Aligned_cols=237 Identities=18% Similarity=0.186 Sum_probs=173.9
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.++++++.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 36788888888765555678899999999999999988888999999999999999999977778889999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccC----------------C--
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGN----------------L-- 142 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~----------------~-- 142 (243)
|.+....+..+..+++|++|++++|.+....+..++.+++|++|++++|.++......+.. .
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCch
Confidence 9999544455789999999999999998888888999999999999999886432211111 1
Q ss_pred -------------------CcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCc
Q 040632 143 -------------------ENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN 203 (243)
Q Consensus 143 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (243)
++|+.|++++|.+++ +..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNR 289 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCC
Confidence 123444444444432 24455666777777777776644444444 56677777777777
Q ss_pred cccccCcccccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 204 LMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 204 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 664 3444556677777777777776 455555444444
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7.1e-28 Score=210.66 Aligned_cols=242 Identities=19% Similarity=0.176 Sum_probs=181.5
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcc-cccCCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNF-HGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
+++|++++|.+++..+..|.++++|++|++++|.. ....+.+|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 57899999999988889999999999999999954 44558889999999999999999987778999999999999999
Q ss_pred CcccccCCchh--hhccCCccEEEeecccCCccCC-CccCCCCCccEEeecCCCccccCCccccCC--CcccEEEccccc
Q 040632 80 NNSFTGPIPNS--LFNLSRLEMLRAQSNIIGGTIP-SRIGNLSKLVNLGLAFNNLQGEIPTEIGNL--ENLEVLVLGENN 154 (243)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~ 154 (243)
+|.+.+..+.. +.++++|++|++++|.+....+ ..++.+++|++|++++|.++...+..+..+ ++|+.|++++|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99998655554 8899999999999998875544 468899999999999998865555444433 344444444444
Q ss_pred cCCCCCccccc--------------------------------------------------------------------C
Q 040632 155 LSGLIPPTIFN--------------------------------------------------------------------I 166 (243)
Q Consensus 155 ~~~~~~~~~~~--------------------------------------------------------------------~ 166 (243)
+.+..+..+.. .
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 33322222221 1
Q ss_pred CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 167 STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 45666666666665 33333333567777777777777766666777777888888888888766677777777664
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-27 Score=188.28 Aligned_cols=231 Identities=23% Similarity=0.297 Sum_probs=181.6
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.++++++.++ .+|..+ .++++.|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 467888888887 455444 47899999999999988888999999999999999999877788899999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccc--cCCccccCC----------------
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQG--EIPTEIGNL---------------- 142 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~~---------------- 142 (243)
|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 9988 5665544 799999999999986666678999999999999998752 233333332
Q ss_pred ----CcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcc
Q 040632 143 ----ENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKL 218 (243)
Q Consensus 143 ----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (243)
++|++|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|++|++++|.+. .+|..+..+++|
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 35666777777776555566777888888888888887 444433336888888888888887 567778888888
Q ss_pred cEEecCCCcccccCCcccCCC
Q 040632 219 IALDLGSNSFSGHIPNTFGNL 239 (243)
Q Consensus 219 ~~l~l~~~~~~~~~~~~~~~l 239 (243)
+.|++++|++++..+..|..+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCS
T ss_pred CEEECCCCCCCccChhHcccc
Confidence 888888888887666666543
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.9e-27 Score=201.32 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=50.7
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++|++++|.+++..|..|.++++|++|++++|.+....|..|..+++|++|++++|.+.+..+..++.+++|++|++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 34444444444444444444444444444444444444444444444444444444444333334444555555555555
Q ss_pred cccc-CCchhhhccCCccEEEeecccCC
Q 040632 82 SFTG-PIPNSLFNLSRLEMLRAQSNIIG 108 (243)
Q Consensus 82 ~~~~-~~~~~~~~~~~L~~l~l~~~~~~ 108 (243)
.+.. .+|..+.++++|++|++++|.++
T Consensus 139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred cccceechHhHhhcCCCCEEEccCCcce
Confidence 4442 23455555555555555555443
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.9e-28 Score=202.62 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=127.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+++..+..|.++++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 57899999999988888899999999999999999988888999999999999999999877677789999999999999
Q ss_pred ccccc-CCchhhhccCCccEEEeeccc-CCccCCCccCCCCCccEEeecCCCccccCCccccC-----------------
Q 040632 81 NSFTG-PIPNSLFNLSRLEMLRAQSNI-IGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGN----------------- 141 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~----------------- 141 (243)
|.+.. ..+..+.++++|++|++++|. +....+..++.+++|++|++.+|.++...+..+..
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 98874 345678888999999999887 44344457888888999998888876555555443
Q ss_pred -------CCcccEEEccccccCC
Q 040632 142 -------LENLEVLVLGENNLSG 157 (243)
Q Consensus 142 -------~~~L~~L~l~~~~~~~ 157 (243)
+++|++|++++|.+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTT
T ss_pred chhhHhhcccccEEEccCCcccc
Confidence 4566667776666553
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.4e-27 Score=197.35 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=94.6
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|..+++|++|++++|.+. .+|.. .+++|++|++++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~ 130 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSF 130 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCC
Confidence 578889999988777778889999999999999988888888889999999999998887 45554 688888888888
Q ss_pred ccccc-CCchhhhccCCccEEEeecccCCccCCCccCCCCCc--cEEeecCCCc
Q 040632 81 NSFTG-PIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKL--VNLGLAFNNL 131 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L--~~l~l~~~~~ 131 (243)
|.+.. ..|..+.++++|++|++++|.+... .+..++++ +.+++++|.+
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 88874 2346788888888888888876532 22233333 5555555443
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=8.8e-27 Score=199.65 Aligned_cols=241 Identities=21% Similarity=0.222 Sum_probs=108.5
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCccc--ccCCCCcccc--ccccEEEecccccCCCccccccCCCCccEEE
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFH--GHLPKELGQL--RRLRVMRFAYNKLSGSFPSWIGVLSKLRILR 77 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (243)
+.|++++|.+.+..+..|.++++|++|++++|.+. ......|..+ +.|+.|++++|.+.+..+..+..+++|++|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 44555555555544444555555555555444321 1111111111 2333333344444333344455555666666
Q ss_pred ccCcccccCCc-hhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCcc--ccCCccccCCCcccEEEccccc
Q 040632 78 LNNNSFTGPIP-NSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQ--GEIPTEIGNLENLEVLVLGENN 154 (243)
Q Consensus 78 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 154 (243)
+++|.+.+..+ ..+.++++|+++++++|.+....+..+..+++|+.+++.+|.+. ...|..+..+++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 66665543333 34555555555555555544444444444444555544444432 1234444445555555555555
Q ss_pred cCCCCCcccccCCcccEEEeeccccCCCC-------ChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCc
Q 040632 155 LSGLIPPTIFNISTLWLLNLFGNQLSGHL-------PSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNS 227 (243)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 227 (243)
+++..+..+..+++|++|++++|.+++.. +...+.++++|++|++++|.+....+..+.++++|+.|++++|.
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 54443334444455555555555443110 00112234445555555554443322334444555555555555
Q ss_pred ccccCCcccCCCCCC
Q 040632 228 FSGHIPNTFGNLRHL 242 (243)
Q Consensus 228 ~~~~~~~~~~~l~~L 242 (243)
+++.++..|.++++|
T Consensus 572 l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 572 LNTLPASVFNNQVSL 586 (680)
T ss_dssp CCCCCTTTTTTCTTC
T ss_pred CCcCCHhHhCCCCCC
Confidence 544444444444443
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=198.58 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=74.1
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+. .+|.. .+++|++|++++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 467777777777666666777777777777777777666777777777777777777766 44444 577777777777
Q ss_pred ccccc-CCchhhhccCCccEEEeecccCC
Q 040632 81 NSFTG-PIPNSLFNLSRLEMLRAQSNIIG 108 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~~L~~l~l~~~~~~ 108 (243)
|.+.. ..|..+..+++|++|++++|.+.
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CccccccchhhhccCCcceEEEecCcccc
Confidence 77764 34566777777777777766654
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.5e-27 Score=201.92 Aligned_cols=194 Identities=21% Similarity=0.197 Sum_probs=102.1
Q ss_pred cccccccEEEecccccCCC--ccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCC-CccCCCCC
Q 040632 44 GQLRRLRVMRFAYNKLSGS--FPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIP-SRIGNLSK 120 (243)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~ 120 (243)
..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+....+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 3444455555544444322 1344445555555555555544 233444555555555555555443333 34555555
Q ss_pred ccEEeecCCCccccCCccccCCCcccEEEccccccCC-CCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEc
Q 040632 121 LVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSG-LIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTL 199 (243)
Q Consensus 121 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 199 (243)
|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+. .+++|++|++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 504 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNM 504 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-ccccCCEEEC
Confidence 6666666655554455555555666666666665554 2345555556666666666665532233322 4566666666
Q ss_pred ccCccccccCcccccCCcccEEecCCCcccccCCcccCCCC
Q 040632 200 SSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLR 240 (243)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~ 240 (243)
++|.+.+..|..+..+++|+.|++++|+++ .+|..|..++
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 666665555555666666666666666665 3444354443
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.1e-26 Score=178.26 Aligned_cols=209 Identities=22% Similarity=0.197 Sum_probs=178.2
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEe
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRA 102 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 102 (243)
+++++|+++++.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998888878999999999999999888666667889999999999999998666677889999999999
Q ss_pred ecccCCccCCCccCCCCCccEEeecCCCcccc-CCccccCCCcccEEEccccccCCCCCcccccCCccc----EEEeecc
Q 040632 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE-IPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLW----LLNLFGN 177 (243)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 177 (243)
.+|.+....+..++.+++|++|++++|.++.. .|..+..+++|++|++++|.+++..+..+..+.+++ ++++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99988876666788999999999999998753 578889999999999999999876666666666676 8999999
Q ss_pred ccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCC
Q 040632 178 QLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 233 (243)
.++ .++...+ ...+|++|++++|.+++..+..+..+++|+.|++++|+++...+
T Consensus 188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 998 6666655 34589999999999987666677899999999999999986443
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.3e-27 Score=204.17 Aligned_cols=234 Identities=23% Similarity=0.331 Sum_probs=149.2
Q ss_pred CcEEecCCCCCcc-----------------ccCCccC--CcccccEEEcccCcccccCCCCccccccccEEEecccc-cC
Q 040632 1 VTALNLSDMGLGG-----------------TIPRHLG--NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNK-LS 60 (243)
Q Consensus 1 l~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 60 (243)
|+.|++++|.+++ .+|..+. ++++|++|++++|.+.+..|..+.++++|+.|++++|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 5788888888887 3777766 88999999999888888888888888888888888887 66
Q ss_pred C-CccccccCC-------CCccEEEccCcccccCCch--hhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCC
Q 040632 61 G-SFPSWIGVL-------SKLRILRLNNNSFTGPIPN--SLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNN 130 (243)
Q Consensus 61 ~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 130 (243)
+ ..|..+..+ ++|++|++++|.+. .+|. .+.++++|+.|++++|.+. ..| .++.+++|+.|++++|.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 4 455544443 47888888888777 6666 6777777777777777766 555 56666777777777766
Q ss_pred ccccCCccccCCCc-ccEEEccccccCCCCCccccc-------------------------------CCcccEEEeeccc
Q 040632 131 LQGEIPTEIGNLEN-LEVLVLGENNLSGLIPPTIFN-------------------------------ISTLWLLNLFGNQ 178 (243)
Q Consensus 131 ~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-------------------------------~~~L~~L~l~~~~ 178 (243)
+. ..|..+..+++ |+.|++++|.++ .+|..+.. .++|+.|++++|.
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 66 55555555555 666666666554 22322211 1245555555555
Q ss_pred cCCCCChhhhcCCCCccEEEcccCccccccCcccc--------cCCcccEEecCCCcccccCCcccC--CCCCC
Q 040632 179 LSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSIT--------NATKLIALDLGSNSFSGHIPNTFG--NLRHL 242 (243)
Q Consensus 179 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~l~l~~~~~~~~~~~~~~--~l~~L 242 (243)
++ .+|..++..+++|+.|++++|.+. .+|..+. ++++|+.|++++|.++ .+|..+. .+++|
T Consensus 685 L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 685 IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 55 555555545556666666666555 2232221 1225555555555555 4444443 44444
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=193.95 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=57.8
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCC-CccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSG-SFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 79 (243)
|++|++++|.+++..|..|.++++|++|++++|.++.. |.. .+++|++|++++|.+.+ ..|..++.+++|++|+++
T Consensus 47 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp CCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE
T ss_pred ccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEec
Confidence 57788888888877777888888888888888877633 332 67777777777777764 245666667777777766
Q ss_pred Ccccc
Q 040632 80 NNSFT 84 (243)
Q Consensus 80 ~~~~~ 84 (243)
+|.+.
T Consensus 124 ~n~l~ 128 (520)
T 2z7x_B 124 TTHLE 128 (520)
T ss_dssp ESSCC
T ss_pred Ccccc
Confidence 66543
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=8.8e-27 Score=195.79 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=48.4
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++|++++|.+++..+..|.++++|++|++++|.++...+.+|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 55 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred eEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence 44555555554444444555555555555555444444444444444444444444443222223444445555555554
Q ss_pred cccc-CCchhhhccCCccEEEeecc
Q 040632 82 SFTG-PIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 82 ~~~~-~~~~~~~~~~~L~~l~l~~~ 105 (243)
.+.. ..|..+.++++|++|++++|
T Consensus 135 ~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 135 LIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccceecChhhhcccCCCCEEeCcCC
Confidence 4442 23444444555555554444
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-28 Score=191.68 Aligned_cols=226 Identities=22% Similarity=0.248 Sum_probs=159.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.+++..+..|.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+ .+ ..++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCC
Confidence 4667777777776665667777777777777777764433 6777777777777776652 22 337777777777
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccc-cCCCcccEEEccccccCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEI-GNLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 159 (243)
|.+....+. .+++|++|++++|.++...+..++.+++|++|++++|.++...+..+ ..+++|++|++++|.++..
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 776633322 35678888888888776666677778888888888888775555544 3577888888888887754
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc-ccCCcccCC
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS-GHIPNTFGN 238 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~ 238 (243)
+ ....+++|++|++++|.++ .++..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|++. +..+..+..
T Consensus 185 ~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp E-CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred c-cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2 2234778888888888887 6666644 6788888888888887 45666778888888888888887 555555555
Q ss_pred CCC
Q 040632 239 LRH 241 (243)
Q Consensus 239 l~~ 241 (243)
+++
T Consensus 261 ~~~ 263 (317)
T 3o53_A 261 NQR 263 (317)
T ss_dssp CHH
T ss_pred ccc
Confidence 543
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.5e-28 Score=189.75 Aligned_cols=222 Identities=21% Similarity=0.227 Sum_probs=145.9
Q ss_pred cEEecCCCCCcc-ccCCccC-------CcccccEEEcccCcccccCCCCc--cccccccEEEecccccCCCccccccCC-
Q 040632 2 TALNLSDMGLGG-TIPRHLG-------NLSFLVSLDISENNFHGHLPKEL--GQLRRLRVMRFAYNKLSGSFPSWIGVL- 70 (243)
Q Consensus 2 ~~l~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l- 70 (243)
+.|+++++.+.. .++..+. ++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH
Confidence 445666666632 3333332 57777777777777776666654 6777777777777777754 5555554
Q ss_pred ----CCccEEEccCcccccCCchhhhccCCccEEEeecccCCcc--CCCcc--CCCCCccEEeecCCCcccc---CCccc
Q 040632 71 ----SKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGT--IPSRI--GNLSKLVNLGLAFNNLQGE---IPTEI 139 (243)
Q Consensus 71 ----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~l--~~~~~L~~l~l~~~~~~~~---~~~~~ 139 (243)
++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.++.. ....+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 7777777777777755556677777777777777765432 11122 5677777777777776521 11233
Q ss_pred cCCCcccEEEccccccCCCCC-cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcc
Q 040632 140 GNLENLEVLVLGENNLSGLIP-PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKL 218 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (243)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 456777777777777775543 34445677777777777777 6666544 5777777777777644 44 6777777
Q ss_pred cEEecCCCcccc
Q 040632 219 IALDLGSNSFSG 230 (243)
Q Consensus 219 ~~l~l~~~~~~~ 230 (243)
+.|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 777777777764
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.9e-26 Score=180.11 Aligned_cols=226 Identities=24% Similarity=0.343 Sum_probs=146.2
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.++.. +.+.++++|++|++++|.+....+ +..+++|++|++++|......+ .+..+++|++|++++
T Consensus 90 L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 90 LTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTE 164 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCS
T ss_pred CCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecC
Confidence 46777777777653 346777777888887777664322 5666666666666664332222 244455555555555
Q ss_pred ccccc---------------------CCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccc
Q 040632 81 NSFTG---------------------PIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEI 139 (243)
Q Consensus 81 ~~~~~---------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 139 (243)
|.+.. ..+. +..+++|+.+++.+|.+....+ +..+++|++|++++|.++... . +
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~ 239 (347)
T 4fmz_A 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-L 239 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-G
T ss_pred CCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-h
Confidence 54442 1121 3444455555555554442211 556677888888877776332 2 6
Q ss_pred cCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCccc
Q 040632 140 GNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
..+++|++|++++|.++.. ..+..+++|+.|++++|.++ .++ . +..+++|++|++++|.+.+..+..+..+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS-V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh-h-hcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 7778888888888877743 45677788888888888887 443 2 33678888999998888877777788888899
Q ss_pred EEecCCCcccccCCcccCCCCCCC
Q 040632 220 ALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 220 ~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.|++++|++++..| +..+++|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCS
T ss_pred EEEccCCccccccC--hhhhhccc
Confidence 99999998886544 55555553
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.2e-26 Score=192.13 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=61.4
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCC-ccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS-FPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~ 79 (243)
|++|++++|.+++..|..|.++++|++|++++|.++.. |.. .+++|++|++++|.+.+. .|..+..+++|++|+++
T Consensus 78 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred ccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC
Confidence 57889999999888788888889999999988888743 333 677888888888877642 34667777777777777
Q ss_pred Ccccc
Q 040632 80 NNSFT 84 (243)
Q Consensus 80 ~~~~~ 84 (243)
+|.+.
T Consensus 155 ~n~l~ 159 (562)
T 3a79_B 155 AAKFR 159 (562)
T ss_dssp CSBCC
T ss_pred CCccc
Confidence 77654
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.7e-28 Score=198.63 Aligned_cols=225 Identities=22% Similarity=0.244 Sum_probs=168.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+.+ .+ ..++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECcC
Confidence 4678888888887766778888888888888888765444 7778888888888887662 22 237888888888
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCcccc-CCCcccEEEccccccCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIG-NLENLEVLVLGENNLSGLI 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 159 (243)
|.+....+. .+++|+.|++++|.++...+..++.+++|++|++++|.++...+..+. .+++|++|++++|.+++.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 887743332 357788888888888877677778888888888888888765666654 678888888888888755
Q ss_pred CcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc-ccCCcccCC
Q 040632 160 PPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS-GHIPNTFGN 238 (243)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~ 238 (243)
.....+++|+.|++++|.++ .++..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..+..
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -ECCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -cccccCCCCCEEECCCCCCC-CCCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22335788888888888888 5666544 67888888888888874 5666788888888888888887 455555555
Q ss_pred CC
Q 040632 239 LR 240 (243)
Q Consensus 239 l~ 240 (243)
++
T Consensus 261 l~ 262 (487)
T 3oja_A 261 NQ 262 (487)
T ss_dssp CH
T ss_pred CC
Confidence 44
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.7e-26 Score=197.15 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=125.5
Q ss_pred CcEEecCCCCCccccCC--ccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCC-ccEEE
Q 040632 1 VTALNLSDMGLGGTIPR--HLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSK-LRILR 77 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~ 77 (243)
|+.|++++|.+. .+|. .+.++++|+.|++++|.+. ..| .+..+++|+.|++++|.+. .+|..+..+++ |++|+
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 355666666665 4555 5666666666666666665 444 5666666666666666665 55555555665 66666
Q ss_pred ccCcccccCCchhhhccC--CccEEEeecccCCccCCC---ccC--CCCCccEEeecCCCccccCCccc-cCCCcccEEE
Q 040632 78 LNNNSFTGPIPNSLFNLS--RLEMLRAQSNIIGGTIPS---RIG--NLSKLVNLGLAFNNLQGEIPTEI-GNLENLEVLV 149 (243)
Q Consensus 78 l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~---~l~--~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~ 149 (243)
+++|.+. .+|..+.... +|+.|++++|.+.+..+. .+. .+.+|+.|++++|.+. ..|..+ ..+++|+.|+
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence 6666655 4454443332 255556555555432221 111 1224555555555555 333322 3455666666
Q ss_pred ccccccCCCCCccccc--------CCcccEEEeeccccCCCCChhhh-cCCCCccEEEcccCccccccCcccccCCcccE
Q 040632 150 LGENNLSGLIPPTIFN--------ISTLWLLNLFGNQLSGHLPSTIG-HSLRNIEYLTLSSNNLMGTIPNSITNATKLIA 220 (243)
Q Consensus 150 l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (243)
+++|.+. .+|..+.. +++|+.|++++|.++ .+|..+. ..+++|+.|++++|.+.+ +|..+..+++|+.
T Consensus 704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780 (876)
T ss_dssp CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence 6666555 23332221 125666666666665 5555443 245566666666666554 4555555566666
Q ss_pred EecCC------CcccccCCcccCCCCCCC
Q 040632 221 LDLGS------NSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 221 l~l~~------~~~~~~~~~~~~~l~~L~ 243 (243)
|++++ |.+.+.+|..|.++++|+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCC
Confidence 65544 455555555555555543
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=5.6e-27 Score=196.21 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=100.1
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCC-CccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSG-SFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 79 (243)
|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+.+ ..+..+..+++|++|+++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 5889999999998888889999999999999999997777779999999999999999875 345678899999999999
Q ss_pred CcccccCCc-hhhhccCCccEEEeecccCCccCCCccCCCC
Q 040632 80 NNSFTGPIP-NSLFNLSRLEMLRAQSNIIGGTIPSRIGNLS 119 (243)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 119 (243)
+|......+ ..+..+++|++|++.+|.+....+..++.++
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 998433444 5788899999999999988866666665433
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=2.7e-26 Score=175.67 Aligned_cols=222 Identities=23% Similarity=0.248 Sum_probs=183.1
Q ss_pred cCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCccccc
Q 040632 6 LSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTG 85 (243)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 85 (243)
+..+.+.... ....+++|+.|+++++.+.. ...+..+++|++|++++|.+.+ . ..+..+++|++|++++|.+..
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 26 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HTCSCTTSEE--CHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC
T ss_pred hcCccccccc--ccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc
Confidence 3444444332 25678899999999998873 3358889999999999999874 3 468889999999999999996
Q ss_pred CCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCccccc
Q 040632 86 PIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFN 165 (243)
Q Consensus 86 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 165 (243)
..+..+..+++|++|++++|.++...+..++.+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 66666889999999999999998777777889999999999999988666666788999999999999998776666788
Q ss_pred CCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCC
Q 040632 166 ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRH 241 (243)
Q Consensus 166 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 241 (243)
+++|+.|++++|.++ .++...+..+++|++|++++|++.+ .++.++.+++..|.++|.+|..++.++.
T Consensus 180 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 899999999999998 5665555578999999999998763 4667889999999999999988887653
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.7e-28 Score=187.80 Aligned_cols=232 Identities=19% Similarity=0.201 Sum_probs=181.0
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCccc-ccCCCCcc-------ccccccEEEecccccCCCccccc--cCCC
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFH-GHLPKELG-------QLRRLRVMRFAYNKLSGSFPSWI--GVLS 71 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~--~~l~ 71 (243)
+.+++++|.+ ..|..+... ++.|+++++.+. ...+..+. .+++|++|++++|.+.+..|..+ ..++
T Consensus 46 ~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 46 EYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp TTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred eeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 4455566666 344433333 888888888874 23444343 68999999999999987778765 8899
Q ss_pred CccEEEccCcccccCCchhhhcc-----CCccEEEeecccCCccCCCccCCCCCccEEeecCCCcccc--CCccc--cCC
Q 040632 72 KLRILRLNNNSFTGPIPNSLFNL-----SRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGE--IPTEI--GNL 142 (243)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~--~~~~~--~~~ 142 (243)
+|++|++++|.+.+. |..+..+ ++|++|++++|.+....+..++.+++|++|++++|.+... .+..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999999965 7777776 8999999999999977778899999999999999986532 23333 788
Q ss_pred CcccEEEccccccCCC---CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCccc
Q 040632 143 ENLEVLVLGENNLSGL---IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 143 ~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
++|++|++++|.+++. ....+..+++|++|++++|.+++..+...+..+++|++|++++|.++ .+|..+. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 9999999999998732 11233467899999999999986564444446799999999999998 6676665 8999
Q ss_pred EEecCCCcccccCCcccCCCCCCC
Q 040632 220 ALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 220 ~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.|++++|++++. |. +..+++|+
T Consensus 278 ~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp EEECCSSCCCSC-CC-TTTSCEEE
T ss_pred EEECCCCCCCCC-hh-HhhCCCCC
Confidence 999999999965 54 87777663
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.6e-25 Score=177.24 Aligned_cols=227 Identities=27% Similarity=0.423 Sum_probs=163.4
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.+++..+ +.++++|++|++++|.++.. ..+..+++|++|++++|.+.+ .+. +..+++|++|++++
T Consensus 68 L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 68 LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTT
T ss_pred ccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCC
Confidence 5889999999986544 89999999999999998753 468999999999999999884 443 88899999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCC--------------------cccc
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIP--------------------TEIG 140 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~--------------------~~~~ 140 (243)
|......+ .+..+++|+++++.+|.+....+ +..+++|+++++++|.+....+ ..+.
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 218 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVA 218 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhh
Confidence 96653433 37778888888888877653322 5666677777777666542211 1144
Q ss_pred CCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccE
Q 040632 141 NLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIA 220 (243)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (243)
.+++|++|++++|.++.. +. +..+++|++|++++|.++ .++ .+ ..+++|++|++++|.+.+. ..+..+++|+.
T Consensus 219 ~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~-~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQIS-DIN-AV-KDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GG-TTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccC-CCh-hH-hcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 556666666666666533 22 556677777777777776 332 22 3577788888888877643 34677788888
Q ss_pred EecCCCcccccCCcccCCCCCCC
Q 040632 221 LDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 221 l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
|++++|++++..+..|.++++|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCS
T ss_pred EECcCCcCCCcChhHhhccccCC
Confidence 88888888877777777777664
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6e-25 Score=168.02 Aligned_cols=200 Identities=25% Similarity=0.286 Sum_probs=131.2
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.++.+++.++. +|..+ .++++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 456666666653 44333 256777777777776666666777777777777777766444445566777777777777
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 77644444566677777777777776655555666777777777777776644444566667777777777776655445
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
.+..+++|+.|++++|.++ .++...+..+++|++|++++|++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 5666677777777777776 555554445667777777777664
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.4e-25 Score=167.52 Aligned_cols=204 Identities=26% Similarity=0.305 Sum_probs=175.6
Q ss_pred cccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEee
Q 040632 24 FLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQ 103 (243)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 103 (243)
..+.++++++.++. .|..+. +.++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57889999998884 454442 679999999999987666789999999999999999985555567889999999999
Q ss_pred cccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCC
Q 040632 104 SNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHL 183 (243)
Q Consensus 104 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 183 (243)
+|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.++ .+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence 99998776777889999999999999998677777889999999999999998766666888999999999999998 67
Q ss_pred ChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccccc
Q 040632 184 PSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 231 (243)
+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 666555789999999999999877667788999999999999998743
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=6e-26 Score=190.73 Aligned_cols=176 Identities=22% Similarity=0.186 Sum_probs=140.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 57899999999888888899999999999999999888888899999999999999998866667899999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCc-cCCCccCCCCCccEEeecCCCccccCCccccCCCcc----cEEEcccccc
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGG-TIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENL----EVLVLGENNL 155 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~ 155 (243)
|.+....+..+..+++|++|++++|.+.. ..|..++.+++|++|++++|.++...+..+..+++| .++++++|.+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 99885444468899999999999998875 357888999999999999998875556666666666 6777777766
Q ss_pred CCCCCcccccCCcccEEEeecc
Q 040632 156 SGLIPPTIFNISTLWLLNLFGN 177 (243)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~ 177 (243)
.+..+..+... +|+++++.+|
T Consensus 190 ~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 190 NFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CEECTTTTTTC-EEEEEEEESC
T ss_pred eecCHHHhccC-cceeEecccc
Confidence 64444333322 4555544443
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8.1e-26 Score=173.42 Aligned_cols=205 Identities=22% Similarity=0.180 Sum_probs=177.1
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 57899999999987777899999999999999999988888899999999999999999866677899999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCcc-CCCccCCCCCccEEeecCCCccccCCccccCCCccc----EEEcccccc
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGT-IPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLE----VLVLGENNL 155 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~ 155 (243)
|.+....+..+..+++|++|++++|.+... .+..++.+++|++|++++|.++...+..+..+++++ ++++++|.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 999865555788999999999999998753 578899999999999999999866666666666666 899999999
Q ss_pred CCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 156 SGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
.+..+..+ ...+|++|++++|.++ .++...+..+++|++|++++|++...
T Consensus 190 ~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 190 NFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccccc
Confidence 86544443 4558999999999998 77777766899999999999999754
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4e-27 Score=184.13 Aligned_cols=225 Identities=22% Similarity=0.199 Sum_probs=184.1
Q ss_pred EecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCccc
Q 040632 4 LNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSF 83 (243)
Q Consensus 4 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (243)
.+++.+.+.......+..+++|+.|++++|.++...+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4455555554444556678899999999999998877889999999999999999874433 88999999999999998
Q ss_pred ccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCccc
Q 040632 84 TGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTI 163 (243)
Q Consensus 84 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 163 (243)
.. ++ ..++|++|++++|.++...+. .+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 83 32 448999999999998855433 46789999999999986666678888999999999999986655555
Q ss_pred -ccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCC
Q 040632 164 -FNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 164 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
..+++|++|++++|.++ .++... .+++|++|++++|.+.+. +..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 165 ~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred hhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 36799999999999998 554332 388999999999999854 455889999999999999999 567778888877
Q ss_pred C
Q 040632 243 D 243 (243)
Q Consensus 243 ~ 243 (243)
+
T Consensus 240 ~ 240 (317)
T 3o53_A 240 E 240 (317)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=2.6e-25 Score=188.88 Aligned_cols=107 Identities=19% Similarity=0.096 Sum_probs=66.7
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+++||+++|.|+...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 46677777777766666677777777777777777766666777777777777777766644444556666666666666
Q ss_pred cccccCCchhhhccCCccEEEeecccC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNII 107 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~ 107 (243)
|.++...+..+.++++|++|++++|.+
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCcc
Confidence 655533233344445555555444443
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.1e-24 Score=183.30 Aligned_cols=107 Identities=24% Similarity=0.246 Sum_probs=78.1
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.+++..+..|.++++|++|++++|.++...+.+|.++++|++|++++|.+.+..+..|+.+++|++|++++
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 57788888888877777788888888888888888776667788888888888888877755555677777777777777
Q ss_pred ccccc-CCchhhhccCCccEEEeecccC
Q 040632 81 NSFTG-PIPNSLFNLSRLEMLRAQSNII 107 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~~L~~l~l~~~~~ 107 (243)
|.+.. ..+..+..+++|++|++++|.+
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccccCCCchhhccchhhhhhcccCccc
Confidence 77653 2345556666666666655543
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.1e-24 Score=177.28 Aligned_cols=56 Identities=29% Similarity=0.432 Sum_probs=27.8
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLS 60 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 60 (243)
|++|++++|.+.+..+ +.++++|++|+++++.+....+ +..+++|++|++++|.+.
T Consensus 70 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125 (466)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC
Confidence 3556666665554332 4555555555555555443222 444455555555444444
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.3e-24 Score=177.04 Aligned_cols=99 Identities=31% Similarity=0.414 Sum_probs=53.9
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++.++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 3556666665543 22 25556666666666666653332 5666666666666666553322 55566666666666
Q ss_pred cccccCCchhhhccCCccEEEeecccC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNII 107 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~ 107 (243)
|.+.. .+. +..+++|++|++++|.+
T Consensus 122 n~l~~-~~~-~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 122 NQITD-IDP-LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp SCCCC-CGG-GTTCTTCSEEEEEEEEE
T ss_pred CCCCC-ChH-HcCCCCCCEEECCCCcc
Confidence 65552 222 44555555555555443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.7e-26 Score=186.73 Aligned_cols=210 Identities=23% Similarity=0.196 Sum_probs=177.2
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
...+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcC
Confidence 3456699999999999998888899999999999999999875444 8899999999999999883 33 338999
Q ss_pred EEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccc-cCCcccEEEeecc
Q 040632 99 MLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIF-NISTLWLLNLFGN 177 (243)
Q Consensus 99 ~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 177 (243)
+|++++|.++...+. .+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999998855443 467899999999999877777888899999999999999877676665 6899999999999
Q ss_pred ccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 178 QLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.++ .++... .+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 180 ~l~-~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 180 FIY-DVKGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp CCC-EEECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred ccc-cccccc--cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 998 444332 489999999999999865 4458899999999999999994 677788877764
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=5.3e-24 Score=174.08 Aligned_cols=214 Identities=22% Similarity=0.252 Sum_probs=170.8
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|++|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+. + +..+++|++|++++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 57899999999864 4 688999999999999998864 3 78899999999999998853 3 78899999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+.+ ++ +..+++|++|++++|.++.. .++.+++|+++++++|...... .+..+++|++|++++|.+++. +
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~ 186 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D 186 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c
Confidence 99884 44 77889999999999988753 3778889999999888543233 467788899999999988753 4
Q ss_pred cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCC
Q 040632 161 PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLR 240 (243)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~ 240 (243)
+..+++|+.|++++|.++ .++ + ..+++|++|++++|.+.+ +| +..+++|+.|++++|++++.++..+.+++
T Consensus 187 --l~~l~~L~~L~l~~N~l~-~~~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNIT-KLD--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp --CTTCTTCCEEECCSSCCS-CCC--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred --cccCCCCCEEECcCCcCC-eec--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 667788889999888887 443 2 367888889998888875 45 77888888888888888876665565554
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.1e-24 Score=166.48 Aligned_cols=196 Identities=23% Similarity=0.222 Sum_probs=105.4
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++++++++.++. +|..+ .++++.|++++|.+....+..|..+++|++|++++|.+.. .+. ...+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 13 LEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSS
T ss_pred cEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCC
Confidence 445555555542 23222 2455566666665555555555556666666666655542 222 144556666666666
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
.+. .+|..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+.
T Consensus 88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 555 4454555555666666666655544444555555666666666555533344445555566666666655544333
Q ss_pred ccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 162 TIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
.+..+++|+.|++++|.++ .+|..++ ..++|+++++++|++.
T Consensus 167 ~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred HhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence 4445555666666666655 5555554 3445566666655553
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.9e-24 Score=165.36 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=178.2
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++.++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57889999988743 3478899999999999998753 4788999999999999999977777789999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+....+..+..+++|++|++++|.++...+..++.+++|++|++++|.++...+..+..+++|++|++++|.+++..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99996666668899999999999999987767778899999999999999986666677889999999999999998777
Q ss_pred cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCc
Q 040632 161 PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATK 217 (243)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (243)
..+..+++|+.|++.+|.+.+ .+++++.+++..|.+.+.+|..++.++.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 778899999999999998762 3668899999999999988988877655
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.3e-23 Score=162.11 Aligned_cols=204 Identities=24% Similarity=0.288 Sum_probs=176.4
Q ss_pred ccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCc
Q 040632 18 HLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRL 97 (243)
Q Consensus 18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 97 (243)
.+.++++++.++++++.++. .|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.. ++.. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 36678899999999999884 44434 3689999999999987777889999999999999999884 3332 688999
Q ss_pred cEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeecc
Q 040632 98 EMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGN 177 (243)
Q Consensus 98 ~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 177 (243)
++|++++|.+. ..+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999988 66777889999999999999998666678899999999999999999776677788999999999999
Q ss_pred ccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 178 QLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
.++ .++...+..+++|++|++++|.+. .+|..+...++|+.+++++|++.
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 998 888877768999999999999998 56777888889999999999876
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=5.5e-24 Score=159.83 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=164.5
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccc-cCCCccccccCCCCccEEEccC-cccccCCchhhhccCCccEE
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNK-LSGSFPSWIGVLSKLRILRLNN-NSFTGPIPNSLFNLSRLEML 100 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l 100 (243)
++++.|+++++.++...+..|..+++|++|++++|. +....+..+..+++|++|++++ |.++...+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998888889999999999999997 7755566889999999999998 88885555678899999999
Q ss_pred EeecccCCccCCCccCCCCCcc---EEeecCC-CccccCCccccCCCccc-EEEccccccCCCCCcccccCCcccEEEee
Q 040632 101 RAQSNIIGGTIPSRIGNLSKLV---NLGLAFN-NLQGEIPTEIGNLENLE-VLVLGENNLSGLIPPTIFNISTLWLLNLF 175 (243)
Q Consensus 101 ~l~~~~~~~~~~~~l~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 175 (243)
++++|.++. .|. +..+.+|+ ++++++| .++...+..+..+++|+ ++++++|.++.. +......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCCCCCCEEEcC
Confidence 999999885 554 77888888 9999999 88756666788899999 999999998844 4433334899999999
Q ss_pred ccc-cCCCCChhhhcCC-CCccEEEcccCccccccCcccccCCcccEEecCCCc
Q 040632 176 GNQ-LSGHLPSTIGHSL-RNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNS 227 (243)
Q Consensus 176 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 227 (243)
+|+ ++ .++...+..+ ++|++|++++|.+++. |.. .+++|+.|+++++.
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 995 87 7776666678 8999999999999854 433 67788999998764
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.6e-23 Score=169.16 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=133.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|++++|.+++. + +..+++|++|++++|.+++. + ++.+++|++|++++|.+.+ .+ +..+++|++|++++
T Consensus 66 L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 66 LTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp CSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTT
T ss_pred CCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCC
Confidence 57899999998864 3 78899999999999988754 2 7888999999999998874 33 77888999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+++ .+ +..+++|++|++++|...... .++.+++|++|++++|.++. .+ +..+++|+.|++++|.+++.
T Consensus 137 N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 137 NTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--
T ss_pred Cccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--
Confidence 88874 32 667778888888877433232 46677778888887777763 33 56667777777777777643
Q ss_pred cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 161 PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
.+..+++|+.|++++|.++ .+| + ..+++|++|++++|.+.+.
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~-~ip--~-~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLT-EID--V-TPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCS-CCC--C-TTCTTCSEEECCSSCCSCC
T ss_pred -ccccCCCCCEEECcCCccc-ccC--c-cccCCCCEEEeeCCcCCCc
Confidence 2556677777777777776 355 2 2566777777777776654
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=169.59 Aligned_cols=203 Identities=19% Similarity=0.148 Sum_probs=151.2
Q ss_pred CcccccEEEcccCcccccCCCCc--cccccccEEEecccccCCCcc----ccccCCCCccEEEccCcccccCCchhhhcc
Q 040632 21 NLSFLVSLDISENNFHGHLPKEL--GQLRRLRVMRFAYNKLSGSFP----SWIGVLSKLRILRLNNNSFTGPIPNSLFNL 94 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 94 (243)
.+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34568888888888887777777 788888888888888775433 334568888888888888876666777888
Q ss_pred CCccEEEeecccCCcc----CCCccCCCCCccEEeecCCCccccCCc----cccCCCcccEEEccccccCCCCCcccccC
Q 040632 95 SRLEMLRAQSNIIGGT----IPSRIGNLSKLVNLGLAFNNLQGEIPT----EIGNLENLEVLVLGENNLSGLIPPTIFNI 166 (243)
Q Consensus 95 ~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 166 (243)
++|++|++++|.+... .+..++.+++|++|++++|.++ ..+. .+..+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 8888888888876421 1223457788888888888875 2222 24567888888888888886666655555
Q ss_pred ---CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccc
Q 040632 167 ---STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 167 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|+.|++++|+++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 68888888888888 7776643 6888888888888753 33 5677888888888888873
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=9.6e-24 Score=158.51 Aligned_cols=192 Identities=14% Similarity=0.201 Sum_probs=162.8
Q ss_pred ccccEEEecccccCCCccccccCCCCccEEEccCcc-cccCCchhhhccCCccEEEeec-ccCCccCCCccCCCCCccEE
Q 040632 47 RRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS-FTGPIPNSLFNLSRLEMLRAQS-NIIGGTIPSRIGNLSKLVNL 124 (243)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~l 124 (243)
+++++|++++|.+....+..+..+++|++|++++|. ++...+..+.++++|++|++++ |.++...+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999986666688899999999999997 7755556788999999999998 88887767788899999999
Q ss_pred eecCCCccccCCccccCCCccc---EEEcccc-ccCCCCCcccccCCccc-EEEeeccccCCCCChhhhcCCCCccEEEc
Q 040632 125 GLAFNNLQGEIPTEIGNLENLE---VLVLGEN-NLSGLIPPTIFNISTLW-LLNLFGNQLSGHLPSTIGHSLRNIEYLTL 199 (243)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 199 (243)
++++|.++ ..|. +..+++|+ +|++++| .++...+..+..+++|+ ++++++|.++ .++...+.. ++|++|++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 99999987 4554 77788888 9999999 88866666788899999 9999999998 888877754 79999999
Q ss_pred ccCc-cccccCcccccC-CcccEEecCCCcccccCCcccCCCCCC
Q 040632 200 SSNN-LMGTIPNSITNA-TKLIALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 200 ~~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
++|+ +.+..+..+..+ ++|+.|++++|++++.++..|.+++.|
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCcee
Confidence 9995 886667778888 999999999999997666667777655
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=2.4e-23 Score=161.99 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=149.0
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
.+.+++|+.|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.. .+ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 45678888888888887743 3 577888888888888888743 33 7788888888888888773 33 577888888
Q ss_pred EEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccc
Q 040632 99 MLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ 178 (243)
Q Consensus 99 ~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (243)
+|++++|.+... + .+..+++|++|++++|.++...+ +..+++|+.|++++|.+++. +. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 888888887743 2 37788888888888888763332 67788888888888888753 33 6778888888888888
Q ss_pred cCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccc
Q 040632 179 LSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 179 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 230 (243)
++ .++. ...+++|++|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 185 l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 IS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 87 4444 336788888888888887543 37788888888888888874
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3.3e-25 Score=174.63 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=153.8
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCccccc-CCCCccccccccEEEecccccCCCccccccCCCCccEEEcc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGH-LPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLN 79 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (243)
++.++++++.+.+..+. +.++++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 35667777777655444 45678888888888877643 55567778888888888887665566677778888888888
Q ss_pred Cc-ccccC-CchhhhccCCccEEEeecc-cCCcc-CCCccCCCC-CccEEeecCCC--cc-ccCCccccCCCcccEEEcc
Q 040632 80 NN-SFTGP-IPNSLFNLSRLEMLRAQSN-IIGGT-IPSRIGNLS-KLVNLGLAFNN--LQ-GEIPTEIGNLENLEVLVLG 151 (243)
Q Consensus 80 ~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~L~l~ 151 (243)
+| .++.. ++..+..+++|++|++++| .++.. .+..+..++ +|++|++++|. ++ ...+..+..+++|++|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 87 45532 4455677788888888887 66532 344456677 88888888873 33 2344556677788888888
Q ss_pred ccc-cCCCCCcccccCCcccEEEeeccc-cCCCCChhhhcCCCCccEEEcccCccccccCcccccC-CcccEEecCCCcc
Q 040632 152 ENN-LSGLIPPTIFNISTLWLLNLFGNQ-LSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA-TKLIALDLGSNSF 228 (243)
Q Consensus 152 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~ 228 (243)
+|. ++...+..+..+++|++|++++|. +.+.....+. ++++|++|++++| +.. ..+..+ ..+..|++++|.+
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccC
Confidence 887 554555666777888888888874 3322222333 5788888888887 332 122222 2355666788888
Q ss_pred cccCCcccCC
Q 040632 229 SGHIPNTFGN 238 (243)
Q Consensus 229 ~~~~~~~~~~ 238 (243)
++..|+.+++
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 8777766653
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2e-25 Score=175.79 Aligned_cols=235 Identities=18% Similarity=0.201 Sum_probs=181.8
Q ss_pred cEEecCCCCCccccCCccCCc--ccccEEEcccCcccccCCCCccccccccEEEecccccCCC-ccccccCCCCccEEEc
Q 040632 2 TALNLSDMGLGGTIPRHLGNL--SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGS-FPSWIGVLSKLRILRL 78 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 78 (243)
+.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 57888888776 3345556 8899999999998866555 55799999999999987644 6777888999999999
Q ss_pred cCcccccCCchhhhccCCccEEEeecc-cCCc-cCCCccCCCCCccEEeecCC-Ccccc-CCccccCCC-cccEEEcccc
Q 040632 79 NNNSFTGPIPNSLFNLSRLEMLRAQSN-IIGG-TIPSRIGNLSKLVNLGLAFN-NLQGE-IPTEIGNLE-NLEVLVLGEN 153 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~-~~~~~l~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~ 153 (243)
++|.+....+..+..+++|++|++++| .++. ..+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 999988777778888999999999998 5653 24455678899999999999 77643 456678888 9999999999
Q ss_pred c--cC-CCCCcccccCCcccEEEeeccc-cCCCCChhhhcCCCCccEEEcccCc-cccccCcccccCCcccEEecCCCcc
Q 040632 154 N--LS-GLIPPTIFNISTLWLLNLFGNQ-LSGHLPSTIGHSLRNIEYLTLSSNN-LMGTIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 154 ~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
. ++ ..++..+..+++|++|++++|. +++..+..+. .+++|++|++++|. +.......+.++++|+.|++++| +
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 4 44 2345566788999999999998 7756666665 68999999999995 33222235788999999999999 5
Q ss_pred cccCCccc-CCCCCC
Q 040632 229 SGHIPNTF-GNLRHL 242 (243)
Q Consensus 229 ~~~~~~~~-~~l~~L 242 (243)
+......+ ..+++|
T Consensus 284 ~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 284 PDGTLQLLKEALPHL 298 (336)
T ss_dssp CTTCHHHHHHHSTTS
T ss_pred CHHHHHHHHhhCcce
Confidence 54333333 224444
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.8e-22 Score=151.60 Aligned_cols=181 Identities=20% Similarity=0.192 Sum_probs=150.3
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEe
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRA 102 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 102 (243)
...+.++++++.++ ..|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678999988887 4444443 68999999999998777778889999999999999998766777888999999999
Q ss_pred ecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCC
Q 040632 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGH 182 (243)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 182 (243)
++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-S 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-c
Confidence 999988777777888999999999999988555556788899999999999998666667888899999999999998 6
Q ss_pred CChhhhcCCCCccEEEcccCccccc
Q 040632 183 LPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
++...+..+++|++|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6655555788999999999988754
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.2e-25 Score=180.41 Aligned_cols=232 Identities=19% Similarity=0.231 Sum_probs=174.5
Q ss_pred CcEEecCCCCCccccC----CccCCcccccEEEcccCccc---ccCCCCc-------cccccccEEEecccccCC----C
Q 040632 1 VTALNLSDMGLGGTIP----RHLGNLSFLVSLDISENNFH---GHLPKEL-------GQLRRLRVMRFAYNKLSG----S 62 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~----~ 62 (243)
|+.|++++|.++...+ ..+..+++|++|+++++.+. +..|..+ ..+++|++|++++|.+.. .
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 113 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence 5789999998886533 34778999999999987443 2333333 678999999999998875 2
Q ss_pred ccccccCCCCccEEEccCcccccCCchh----hhcc---------CCccEEEeecccCCc-cCC---CccCCCCCccEEe
Q 040632 63 FPSWIGVLSKLRILRLNNNSFTGPIPNS----LFNL---------SRLEMLRAQSNIIGG-TIP---SRIGNLSKLVNLG 125 (243)
Q Consensus 63 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~l~l~~~~~~~-~~~---~~l~~~~~L~~l~ 125 (243)
++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.++. ..+ ..+..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 5667788999999999999886433333 3344 899999999998762 222 3456778999999
Q ss_pred ecCCCcccc-----CCccccCCCcccEEEccccccC----CCCCcccccCCcccEEEeeccccCCC----CChhhh-cCC
Q 040632 126 LAFNNLQGE-----IPTEIGNLENLEVLVLGENNLS----GLIPPTIFNISTLWLLNLFGNQLSGH----LPSTIG-HSL 191 (243)
Q Consensus 126 l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~ 191 (243)
+++|.++.. .+..+..+++|++|++++|.++ ..++..+..+++|+.|++++|.+++. ++..+. ..+
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 999987632 2336778899999999999885 34566778889999999999998744 233332 137
Q ss_pred CCccEEEcccCcccc----ccCccc-ccCCcccEEecCCCcccccC
Q 040632 192 RNIEYLTLSSNNLMG----TIPNSI-TNATKLIALDLGSNSFSGHI 232 (243)
Q Consensus 192 ~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~~~~~~~~ 232 (243)
++|++|++++|.+.+ .+|..+ .++++|+.|++++|++++..
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 899999999999986 366666 66899999999999998655
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.8e-25 Score=175.42 Aligned_cols=231 Identities=20% Similarity=0.205 Sum_probs=116.3
Q ss_pred CcEEecCCCCCccccC----CccCCcc-cccEEEcccCcccccCCCCcccc-----ccccEEEecccccCCCcccc----
Q 040632 1 VTALNLSDMGLGGTIP----RHLGNLS-FLVSLDISENNFHGHLPKELGQL-----RRLRVMRFAYNKLSGSFPSW---- 66 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~---- 66 (243)
|+.|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 3456666666554433 3444555 56666666665554444444443 55666666666555333332
Q ss_pred ccCC-CCccEEEccCcccccCCchhhh----c-cCCccEEEeecccCCccCCC----ccCCCC-CccEEeecCCCccccC
Q 040632 67 IGVL-SKLRILRLNNNSFTGPIPNSLF----N-LSRLEMLRAQSNIIGGTIPS----RIGNLS-KLVNLGLAFNNLQGEI 135 (243)
Q Consensus 67 ~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~~----~l~~~~-~L~~l~l~~~~~~~~~ 135 (243)
+..+ ++|++|++++|.++...+..+. . +.+|++|++++|.++..... .+..+. +|++|++++|.++...
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 2223 5666666666665533333322 2 24566666666655532221 122333 5666666666655333
Q ss_pred Cc----cccCC-CcccEEEccccccCCC----CCccccc-CCcccEEEeeccccCCCCCh---hhhcCCCCccEEEcccC
Q 040632 136 PT----EIGNL-ENLEVLVLGENNLSGL----IPPTIFN-ISTLWLLNLFGNQLSGHLPS---TIGHSLRNIEYLTLSSN 202 (243)
Q Consensus 136 ~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 202 (243)
+. .+..+ ++|++|++++|.+... ++..+.. .++|++|++++|.+++..+. .....+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 32 22233 3666666666665532 1222323 34666666666666533221 22234556666666666
Q ss_pred ccccc-------cCcccccCCcccEEecCCCccccc
Q 040632 203 NLMGT-------IPNSITNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 203 ~~~~~-------~~~~~~~~~~L~~l~l~~~~~~~~ 231 (243)
.+.+. ++..+..+++|+.|++++|++...
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 53221 223445566666667777666644
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=162.63 Aligned_cols=199 Identities=19% Similarity=0.215 Sum_probs=163.3
Q ss_pred CcEEecCCCCCccccCCcc--CCcccccEEEcccCcccccCC----CCccccccccEEEecccccCCCccccccCCCCcc
Q 040632 1 VTALNLSDMGLGGTIPRHL--GNLSFLVSLDISENNFHGHLP----KELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLR 74 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 74 (243)
|+.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5789999999998888877 899999999999999886443 3345789999999999999877778899999999
Q ss_pred EEEccCcccccC--C--chhhhccCCccEEEeecccCCccCCC----ccCCCCCccEEeecCCCccccCCccccCC---C
Q 040632 75 ILRLNNNSFTGP--I--PNSLFNLSRLEMLRAQSNIIGGTIPS----RIGNLSKLVNLGLAFNNLQGEIPTEIGNL---E 143 (243)
Q Consensus 75 ~L~l~~~~~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~l~l~~~~~~~~~~~~~~~~---~ 143 (243)
+|++++|.+.+. . +..+..+++|++|++++|.++. .+. .++.+++|++|++++|.++...|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 999999986532 1 2223678999999999998863 222 24677999999999999986667666666 6
Q ss_pred cccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 144 NLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 144 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
+|++|++++|.++ .+|..+. ++|++|++++|.++ .++. ...+++|++|++++|++++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC--TTSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch--hhhCCCccEEECcCCCCCC
Confidence 9999999999998 4566553 79999999999998 5544 2368999999999999874
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.6e-24 Score=172.35 Aligned_cols=228 Identities=18% Similarity=0.128 Sum_probs=176.9
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCC----CCccccc-cccEEEecccccCCCccccccCC-----CC
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLP----KELGQLR-RLRVMRFAYNKLSGSFPSWIGVL-----SK 72 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 72 (243)
..+++++.+++..|..+...++|++|++++|.++...+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788999998888777777779999999999987766 6778888 89999999999986666666554 99
Q ss_pred ccEEEccCcccccCCchhh----hcc-CCccEEEeecccCCccCCCc----cCC-CCCccEEeecCCCccccCC----cc
Q 040632 73 LRILRLNNNSFTGPIPNSL----FNL-SRLEMLRAQSNIIGGTIPSR----IGN-LSKLVNLGLAFNNLQGEIP----TE 138 (243)
Q Consensus 73 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~~~~~----l~~-~~~L~~l~l~~~~~~~~~~----~~ 138 (243)
|++|++++|.+....+..+ ..+ ++|++|++++|.++...+.. +.. +.+|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999986665544 344 89999999999987554433 333 4689999999999875433 33
Q ss_pred ccCCC-cccEEEccccccCCCCCcc----cccC-CcccEEEeeccccCCC----CChhhhcCCCCccEEEcccCcccccc
Q 040632 139 IGNLE-NLEVLVLGENNLSGLIPPT----IFNI-STLWLLNLFGNQLSGH----LPSTIGHSLRNIEYLTLSSNNLMGTI 208 (243)
Q Consensus 139 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (243)
+...+ +|++|++++|.++...+.. +... ++|++|++++|.+++. ++..+....++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44555 8999999999998654433 3344 5999999999999853 34444433569999999999997643
Q ss_pred C----cccccCCcccEEecCCCcccc
Q 040632 209 P----NSITNATKLIALDLGSNSFSG 230 (243)
Q Consensus 209 ~----~~~~~~~~L~~l~l~~~~~~~ 230 (243)
+ ..+..+++|+.|++++|.+.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred HHHHHHHHhcCCCccEEEeccCCccc
Confidence 3 345778999999999998543
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.7e-22 Score=148.90 Aligned_cols=178 Identities=22% Similarity=0.279 Sum_probs=156.6
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
++++.+++.++ .+|..+. ++++.|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 56888888887 4554443 68999999999999888889999999999999999999777788999999999999999
Q ss_pred ccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCc
Q 040632 82 SFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99966667788999999999999999877666788999999999999999866666788999999999999999977667
Q ss_pred ccccCCcccEEEeeccccCCC
Q 040632 162 TIFNISTLWLLNLFGNQLSGH 182 (243)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~~~~ 182 (243)
.+..+++|+.|++++|.+...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 888899999999999999744
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.9e-22 Score=153.79 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=160.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.|+++++.+... + .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ .+ .+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence 57899999998753 3 58899999999999999985544 8999999999999999884 33 688899999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+.. .+. +..+++|++|++++|.++...+ ++.+++|++|++++|.++. .+. +..+++|+.|++++|.+++..
T Consensus 117 n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 117 TQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred CCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh-
Confidence 99984 443 8899999999999999875433 8889999999999999874 333 888999999999999998543
Q ss_pred cccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 161 PTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
.+..+++|+.|++++|.++ .++. + ..+++|++|++++|++++
T Consensus 190 -~l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 -PLASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEEEEEEEEC
T ss_pred -hhcCCCCCCEEEccCCccC-cccc-c-cCCCCCCEEEccCCeeec
Confidence 3788999999999999998 5543 3 479999999999999974
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1e-21 Score=165.39 Aligned_cols=62 Identities=26% Similarity=0.340 Sum_probs=30.9
Q ss_pred CcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCc
Q 040632 167 STLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+.++++|+.|++++|++++..+.
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 44455555555444 3333 2345555555555554 3344455555555555555555544443
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=9.9e-21 Score=159.45 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=116.7
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCc
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNN 81 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (243)
+.|+++++.++ .+|..+. ++|+.|++++|.++. .|. .+++|++|++++|.+. .+|. .+++|++|++++|
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 45666666666 4444332 566666666666652 222 3556666666666655 2333 3455555555555
Q ss_pred ccccCCchhh-----------------hccCCccEEEeecccCCccCCCccCC-----------------CCCccEEeec
Q 040632 82 SFTGPIPNSL-----------------FNLSRLEMLRAQSNIIGGTIPSRIGN-----------------LSKLVNLGLA 127 (243)
Q Consensus 82 ~~~~~~~~~~-----------------~~~~~L~~l~l~~~~~~~~~~~~l~~-----------------~~~L~~l~l~ 127 (243)
.+. .++..+ ..+++|++|++++|.++. .+..+.. +++|+.|+++
T Consensus 112 ~l~-~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 189 (622)
T 3g06_A 112 PLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189 (622)
T ss_dssp CCC-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred cCC-CCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECC
Confidence 544 222200 012455555555555442 1211100 1233333333
Q ss_pred CCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 128 FNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 128 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
+|.++ .++. ..++|+.|++++|.++. ++. .+++|++|++++|.++ .++ ..+++|++|++++|.+++
T Consensus 190 ~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~- 255 (622)
T 3g06_A 190 DNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTS- 255 (622)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-
T ss_pred CCCCC-CCCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCc-
Confidence 33332 1111 11334444444444432 121 2367888888888887 565 246788999999998874
Q ss_pred cCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 208 IPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 208 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
+|. .+++|+.|++++|.++ .+|..|.++++|+
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 454 5678999999999999 7788888888774
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=5.4e-22 Score=162.05 Aligned_cols=208 Identities=22% Similarity=0.289 Sum_probs=99.9
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccc-------------cEEEecccccCCCccccc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRL-------------RVMRFAYNKLSGSFPSWI 67 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~ 67 (243)
|++++++++.+ +.+|..++++++|++|+++++.+.+..|..++++.+| ++|++++|.+.+ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 56788899998 6888889999999999999988887888888777654 777777776653 3321
Q ss_pred cCCCCccEEEccCcccccCCchhh----------------hcc-CCccEEEeecccCCccCCCccCCCCCccEEeecCCC
Q 040632 68 GVLSKLRILRLNNNSFTGPIPNSL----------------FNL-SRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNN 130 (243)
Q Consensus 68 ~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 130 (243)
.++|++|++++|.+.+ +|..+ ... ++|++|++++|.++. .| .++.+++|+++++++|.
T Consensus 90 --~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp --CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred --cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 2445555555554442 22111 011 355555555555553 33 35556666666666655
Q ss_pred ccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCc
Q 040632 131 LQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPN 210 (243)
Q Consensus 131 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 210 (243)
++ ..|.. .++|++|++++|.+++ +| .+..+++|+.|++++|.++ .++.. +++|++|++++|.+. .+|.
T Consensus 165 l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~ 232 (454)
T 1jl5_A 165 LK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE 232 (454)
T ss_dssp CS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC
T ss_pred Cc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccc
Confidence 54 22221 1345555555555543 23 3445555555555555554 23321 234555555555544 3332
Q ss_pred ccccCCcccEEecCCCccc
Q 040632 211 SITNATKLIALDLGSNSFS 229 (243)
Q Consensus 211 ~~~~~~~L~~l~l~~~~~~ 229 (243)
+..+++|+.|++++|.++
T Consensus 233 -~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp -CTTCTTCCEEECCSSCCS
T ss_pred -cCCCCCCCEEECCCCcCC
Confidence 445555555555555555
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=4.8e-21 Score=156.44 Aligned_cols=87 Identities=28% Similarity=0.379 Sum_probs=35.3
Q ss_pred cccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccc--ccCcccccC------
Q 040632 144 NLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMG--TIPNSITNA------ 215 (243)
Q Consensus 144 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~------ 215 (243)
+|++|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|.+.+ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 45555555555543 2222 356666666666665 4554 24566777777776665 455555555
Q ss_pred -------CcccEEecCCCcccc--cCCcccCCC
Q 040632 216 -------TKLIALDLGSNSFSG--HIPNTFGNL 239 (243)
Q Consensus 216 -------~~L~~l~l~~~~~~~--~~~~~~~~l 239 (243)
++|+.|++++|.+++ .+|+++.++
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ---------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 566777777776665 555554443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.2e-24 Score=173.02 Aligned_cols=228 Identities=18% Similarity=0.209 Sum_probs=173.6
Q ss_pred cCCccCCcccccEEEcccCcccccC----CCCccccccccEEEecccccC---CCccccc-------cCCCCccEEEccC
Q 040632 15 IPRHLGNLSFLVSLDISENNFHGHL----PKELGQLRRLRVMRFAYNKLS---GSFPSWI-------GVLSKLRILRLNN 80 (243)
Q Consensus 15 ~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~ 80 (243)
++..+..+++|+.|++++|.+.... +..+..+++|++|++++|.+. +..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3345667899999999999987543 344778999999999987543 2334333 6889999999999
Q ss_pred ccccc----CCchhhhccCCccEEEeecccCCccCCCccC----CC---------CCccEEeecCCCcccc-CC---ccc
Q 040632 81 NSFTG----PIPNSLFNLSRLEMLRAQSNIIGGTIPSRIG----NL---------SKLVNLGLAFNNLQGE-IP---TEI 139 (243)
Q Consensus 81 ~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~----~~---------~~L~~l~l~~~~~~~~-~~---~~~ 139 (243)
|.+.. .++..+..+++|++|++++|.++...+..++ .+ ++|++|++++|.++.. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99985 3566788999999999999988643333333 33 8999999999998633 33 356
Q ss_pred cCCCcccEEEccccccCC-----CCCcccccCCcccEEEeeccccC----CCCChhhhcCCCCccEEEcccCccccc---
Q 040632 140 GNLENLEVLVLGENNLSG-----LIPPTIFNISTLWLLNLFGNQLS----GHLPSTIGHSLRNIEYLTLSSNNLMGT--- 207 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 207 (243)
..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..++..+. .+++|++|++++|.+.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHH
Confidence 678899999999998872 22336778899999999999985 24555555 689999999999999754
Q ss_pred -cCccc--ccCCcccEEecCCCcccc----cCCccc-CCCCCCC
Q 040632 208 -IPNSI--TNATKLIALDLGSNSFSG----HIPNTF-GNLRHLD 243 (243)
Q Consensus 208 -~~~~~--~~~~~L~~l~l~~~~~~~----~~~~~~-~~l~~L~ 243 (243)
++..+ ..+++|+.|++++|.+++ .+|..+ .++++|+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 45555 348999999999999997 366655 4455553
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=6e-25 Score=180.18 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=111.9
Q ss_pred CcccccEEEcccCcccccCCCCcc-----ccccccEEEecccccCCC----ccccccCCCCccEEEccCcccccCCch--
Q 040632 21 NLSFLVSLDISENNFHGHLPKELG-----QLRRLRVMRFAYNKLSGS----FPSWIGVLSKLRILRLNNNSFTGPIPN-- 89 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~-- 89 (243)
.+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.+......
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 344555555555544322222221 133555555555554432 233444455566666655554422111
Q ss_pred --h-hhccCCccEEEeecccCCcc----CCCccCCCCCccEEeecCCCccccCCcccc-----CCCcccEEEccccccCC
Q 040632 90 --S-LFNLSRLEMLRAQSNIIGGT----IPSRIGNLSKLVNLGLAFNNLQGEIPTEIG-----NLENLEVLVLGENNLSG 157 (243)
Q Consensus 90 --~-~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~ 157 (243)
. +..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 1 11345566666666555432 233344456666666666655432222221 12466677776666653
Q ss_pred C----CCcccccCCcccEEEeeccccCCCCChhhhc----CCCCccEEEcccCcccc----ccCcccccCCcccEEecCC
Q 040632 158 L----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH----SLRNIEYLTLSSNNLMG----TIPNSITNATKLIALDLGS 225 (243)
Q Consensus 158 ~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~ 225 (243)
. ++..+..+++|++|++++|.+++..+..+.+ ..++|++|++++|.+++ .++..+..+++|+.|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 3 2334445677778888777776443333332 24678888888887764 4566667778888888888
Q ss_pred Cccccc
Q 040632 226 NSFSGH 231 (243)
Q Consensus 226 ~~~~~~ 231 (243)
|++++.
T Consensus 408 N~i~~~ 413 (461)
T 1z7x_W 408 NCLGDA 413 (461)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 877653
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.2e-20 Score=149.33 Aligned_cols=232 Identities=19% Similarity=0.151 Sum_probs=153.9
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCcc-ccccCCCCccE-EEccC
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFP-SWIGVLSKLRI-LRLNN 80 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~ 80 (243)
+++-++++++ .+|..+ .++++.|++++|.++...+.+|.++++|++|++++|.+.+..+ ..|.+++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4555566665 345444 3578888888888887777788888888888888888754443 46777777665 44556
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCC-CccccCCccccCCC-cccEEEccccccCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFN-NLQGEIPTEIGNLE-NLEVLVLGENNLSGL 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~ 158 (243)
|.+....+..+..+++|+++++.+|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 7777555667788888888888888877555555556666777777553 44433334455543 578888888888744
Q ss_pred CCcccccCCcccEEEeec-cccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccC
Q 040632 159 IPPTIFNISTLWLLNLFG-NQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFG 237 (243)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 237 (243)
+.......++.++.+.+ |.++ .++...+..+++|++|++++|.++...+..+. +|+.|.+.++.--+..| .+.
T Consensus 170 -~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 170 -HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp -CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTT
T ss_pred -ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cch
Confidence 44444556788888875 5565 78877766788888888888888755444444 45555554443333444 355
Q ss_pred CCCCCC
Q 040632 238 NLRHLD 243 (243)
Q Consensus 238 ~l~~L~ 243 (243)
++++|+
T Consensus 244 ~l~~L~ 249 (350)
T 4ay9_X 244 KLVALM 249 (350)
T ss_dssp TCCSCC
T ss_pred hCcChh
Confidence 555553
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.1e-24 Score=178.71 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=37.6
Q ss_pred cEEecCCCCCcc----ccCCccCCcccccEEEcccCcccccCCCCcc-----ccccccEEEecccccCCCc----ccccc
Q 040632 2 TALNLSDMGLGG----TIPRHLGNLSFLVSLDISENNFHGHLPKELG-----QLRRLRVMRFAYNKLSGSF----PSWIG 68 (243)
Q Consensus 2 ~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~ 68 (243)
+.|++++|.++. .++..+.++++|++|++++|.+....+..+. ..++|++|++++|.+.+.. +..+.
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 455555555552 2344455555555555555554422121111 1234555555555443211 22333
Q ss_pred CCCCccEEEccCcccc
Q 040632 69 VLSKLRILRLNNNSFT 84 (243)
Q Consensus 69 ~l~~L~~L~l~~~~~~ 84 (243)
.+++|++|++++|.+.
T Consensus 168 ~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 168 AKPDFKELTVSNNDIN 183 (461)
T ss_dssp HCTTCCEEECCSSBCH
T ss_pred hCCCCCEEECcCCCcc
Confidence 3455555555555443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5e-21 Score=140.68 Aligned_cols=193 Identities=20% Similarity=0.187 Sum_probs=120.9
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
+.++.+++.++.. |..+ .+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4556666655532 3222 456778888887777555556677778888888777777444445667777777777777
Q ss_pred cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCCh
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPS 185 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 185 (243)
.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7765555556677777777777777664444455666777777777776665544445666677777777665541
Q ss_pred hhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCC
Q 040632 186 TIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 233 (243)
.++++++|++..|.+.+.+|..++.++. +...|...+..+
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence 2456666666666666666666655443 344444443333
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.9e-20 Score=148.28 Aligned_cols=220 Identities=22% Similarity=0.168 Sum_probs=173.0
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccc-cCCCCccccccccE-EEecccccCCCccccccCCCCccEEEc
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHG-HLPKELGQLRRLRV-MRFAYNKLSGSFPSWIGVLSKLRILRL 78 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l 78 (243)
+++|++++|.++...+..|.++++|++|++++|.+.+ ..+.+|.++++++. +.+..|.+....+..|..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 5789999999997666789999999999999999854 45667899998776 456678888666788999999999999
Q ss_pred cCcccccCCchhhhccCCccEEEeecc-cCCccCCCccCCCC-CccEEeecCCCccccCCccccCCCcccEEEccc-ccc
Q 040632 79 NNNSFTGPIPNSLFNLSRLEMLRAQSN-IIGGTIPSRIGNLS-KLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGE-NNL 155 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~ 155 (243)
++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|.++ ..+.......+++++.+.+ |.+
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTC
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcc
Confidence 999998555556667778888998764 56555555566654 6899999999998 4444455567899999986 556
Q ss_pred CCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCC
Q 040632 156 SGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSN 226 (243)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 226 (243)
+...+..+..+++|+.|++++|+++ .+|... +.+|+.|.+.++.-.+.+| .+..+++|+.+++.++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 6444456788999999999999998 888764 5677888877765544666 4788999999999764
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.6e-20 Score=137.97 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=79.6
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEe
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRA 102 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 102 (243)
+++++|+++++.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555555555555555555333334455555555555555555333333455555555555
Q ss_pred ecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCC
Q 040632 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGH 182 (243)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 182 (243)
++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.. .++.++.+++..|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 5555554433344555555555555555543333334455555555555554432 233455555555555555
Q ss_pred CChhh
Q 040632 183 LPSTI 187 (243)
Q Consensus 183 ~~~~~ 187 (243)
+|..+
T Consensus 181 ip~~~ 185 (208)
T 2o6s_A 181 VRNSA 185 (208)
T ss_dssp BBCTT
T ss_pred eeccC
Confidence 55443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2e-20 Score=144.35 Aligned_cols=173 Identities=24% Similarity=0.346 Sum_probs=119.8
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
+..+++|+.|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. .+ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34677778888887777643 236777788888888877774333 7777888888888877763 33 367777788
Q ss_pred EEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccc
Q 040632 99 MLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ 178 (243)
Q Consensus 99 ~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (243)
+|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888877776642 3466777788888877777633 456677778888887777765432 6677777888888777
Q ss_pred cCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 179 LSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 179 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
++ .++. + ..+++|+.|++++|++..
T Consensus 190 i~-~l~~-l-~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 IS-DLRA-L-AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CC-BCGG-G-TTCTTCSEEEEEEEEEEC
T ss_pred CC-CChh-h-ccCCCCCEEECcCCcccC
Confidence 76 4443 3 357777888887777754
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=4e-20 Score=154.12 Aligned_cols=186 Identities=24% Similarity=0.346 Sum_probs=102.9
Q ss_pred cccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEee
Q 040632 24 FLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQ 103 (243)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 103 (243)
+++.|+++++.+++ .|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++. +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 33323 255666666666655 344 235666666666666653 444 332 66666666
Q ss_pred cccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCC
Q 040632 104 SNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHL 183 (243)
Q Consensus 104 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 183 (243)
+|.++. .|. .+++|+.|++++|.++. +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666553 333 45566666666666552 332 34566666666666654 343 32 56666666666665 55
Q ss_pred ChhhhcCCCCc-------cEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCC
Q 040632 184 PSTIGHSLRNI-------EYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGN 238 (243)
Q Consensus 184 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 238 (243)
|. +. .+| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..|..
T Consensus 196 p~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 54 22 144 66666666665 34555555666666666666666555554433
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=6.8e-20 Score=141.39 Aligned_cols=194 Identities=22% Similarity=0.270 Sum_probs=157.2
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEe
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRA 102 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 102 (243)
.++..+.+....+.+. ..+..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.. .+. +..+++|++|++
T Consensus 24 ~~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCcccc--cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEEC
Confidence 3444445555555432 234678999999999999874 33 47889999999999999984 444 889999999999
Q ss_pred ecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCC
Q 040632 103 QSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGH 182 (243)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 182 (243)
++|.+.. .+ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.++ .
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~ 170 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-D 170 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-C
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-c
Confidence 9999874 33 488999999999999998743 4678899999999999999865 67888999999999999998 4
Q ss_pred CChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCC
Q 040632 183 LPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 233 (243)
++. ...+++|++|++++|.+.+. + .+..+++|+.|++++|+++....
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 544 44799999999999999854 4 48899999999999999885443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.3e-19 Score=151.07 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=153.3
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
++.|++++|.+++ +|..+ .++|+.|++++|.++ ..| ..+++|++|++++|.+.+ +|. +.. +|++|++++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 5789999999986 66544 388999999999998 445 557999999999999985 666 554 999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIP 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 160 (243)
|.+++ +|. .+++|++|++++|.++. .|. .+++|++|++++|.++. .|. +. ++|+.|++++|.++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99985 555 67899999999999885 454 57899999999999884 555 44 89999999999998 455
Q ss_pred cccccCCcc-------cEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccC
Q 040632 161 PTIFNISTL-------WLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA 215 (243)
Q Consensus 161 ~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 215 (243)
. +.. +| +.|++++|.++ .+|..++. +++|++|++++|++++..|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5 443 77 99999999999 89998884 9999999999999988777766554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.8e-20 Score=156.41 Aligned_cols=173 Identities=24% Similarity=0.342 Sum_probs=101.8
Q ss_pred cCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCcc
Q 040632 19 LGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLE 98 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 98 (243)
+..+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCC
Confidence 34566666666666666532 2 45666666666666666653332 556666666666666665 222 455666666
Q ss_pred EEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccc
Q 040632 99 MLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ 178 (243)
Q Consensus 99 ~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (243)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 666666665532 2355666666666666666532 445566666666666666654433 5566666666666666
Q ss_pred cCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 179 LSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 179 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
++ .++ .+. .+++|+.|+|++|++..
T Consensus 187 i~-~l~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 IS-DLR-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp CC-BCG-GGT-TCTTCSEEECCSEEEEC
T ss_pred CC-CCh-HHc-cCCCCCEEEccCCcCcC
Confidence 65 332 222 46666666666666653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=2.2e-19 Score=150.99 Aligned_cols=199 Identities=23% Similarity=0.275 Sum_probs=147.5
Q ss_pred CcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEE
Q 040632 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEML 100 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 100 (243)
.+..+..+.+....+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+... +. +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEE
Confidence 3444555566666555332 24678888888888888773 33 477888999999988888843 33 7788889999
Q ss_pred EeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccC
Q 040632 101 RAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 101 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 180 (243)
++++|.+.. .+ .+..+++|+.|++++|.+.. . ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 998888774 33 57888889999998888763 2 4577788899999988888754 56778888999999998887
Q ss_pred CCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCccc
Q 040632 181 GHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 181 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 236 (243)
+ ++. +..+++|+.|+|++|.+.+. + .+..+++|+.|++++|++.+.+...+
T Consensus 167 ~-~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 167 D-IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp C-CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred C-chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCccccc
Confidence 4 333 33688899999999888753 3 57888889999999888876544433
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=142.82 Aligned_cols=176 Identities=24% Similarity=0.238 Sum_probs=133.2
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCcccccc-CCCCccEEEccCcccccCCchhhhccCCccEEEeec
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIG-VLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQS 104 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 104 (243)
+.++++++.++. .|..+ .+.++.|++++|.+....+..+. .+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888887773 44433 24578899999888865566666 788999999999888866566788888999999998
Q ss_pred ccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCccc---ccCCcccEEEeeccccCC
Q 040632 105 NIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTI---FNISTLWLLNLFGNQLSG 181 (243)
Q Consensus 105 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 181 (243)
|.+....+..+..+.+|++|++++|.+....+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 88886666678888889999998888876667778888888888888888875433333 45788888888888887
Q ss_pred CCChhhhcCCCC--ccEEEcccCccc
Q 040632 182 HLPSTIGHSLRN--IEYLTLSSNNLM 205 (243)
Q Consensus 182 ~~~~~~~~~~~~--L~~L~l~~~~~~ 205 (243)
.++...+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 666554445665 477888888775
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.2e-18 Score=129.71 Aligned_cols=154 Identities=25% Similarity=0.222 Sum_probs=121.4
Q ss_pred ccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecC
Q 040632 49 LRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAF 128 (243)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~ 128 (243)
-+.++.+++.+. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777766 555544 38899999999988866677788888999999999888766556678888899999998
Q ss_pred CCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 129 NNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 129 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
|.++...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .++...+..+++|++|++++|++...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 8887555566778888999999988888 55777788888899999988888 66655555788888999988887643
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8.6e-19 Score=129.75 Aligned_cols=153 Identities=21% Similarity=0.288 Sum_probs=126.7
Q ss_pred cEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCC
Q 040632 50 RVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFN 129 (243)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 129 (243)
+.++.+++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56788887777 456544 378999999999988655667888999999999999988777888999999999999999
Q ss_pred CccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 130 NLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 130 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|++|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 988555556788899999999999998777788888899999999999998 6666555578899999999998853
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=7e-19 Score=128.08 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=76.2
Q ss_pred cccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccE
Q 040632 44 GQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVN 123 (243)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 123 (243)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .. ..+..+++|++|++++|.++...+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666555 333 3555566666666555433 22 23445555555555555554434444445555555
Q ss_pred EeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccc-cCCCCChhhhcCCCCccEEEcccC
Q 040632 124 LGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQ-LSGHLPSTIGHSLRNIEYLTLSSN 202 (243)
Q Consensus 124 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 202 (243)
|++++|.++...+..+.. +++|++|++++|. ++ .++ .+ ..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~------------------------l~~L~~L~L~~n~~i~-~~~-~l-~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINT------------------------LPKVNSIDLSYNGAIT-DIM-PL-KTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTT------------------------CSSCCEEECCSCTBCC-CCG-GG-GGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhh------------------------CCCCCEEEccCCCCcc-ccH-hh-cCCCCCCEEECCCC
Confidence 555555444333344444 4445555555554 33 333 22 24556666666666
Q ss_pred ccccccCcccccCCcccEEecCCCccc
Q 040632 203 NLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 203 ~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
.+.+. + .+..+++|+.|++++|++.
T Consensus 170 ~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 65532 2 4555566666666666554
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.3e-18 Score=128.76 Aligned_cols=134 Identities=23% Similarity=0.232 Sum_probs=73.2
Q ss_pred ccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEee
Q 040632 47 RRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGL 126 (243)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l 126 (243)
+.++.|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555554333334555555555555555555444455555555555555555555443344455555666666
Q ss_pred cCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccC
Q 040632 127 AFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 180 (243)
++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665555444555555566666666666655444444555566666666666553
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.9e-19 Score=127.52 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=107.7
Q ss_pred hccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccE
Q 040632 92 FNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWL 171 (243)
Q Consensus 92 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 171 (243)
..+++|+.++++++.+. ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566677777776665 333 4666777777777777554 2235677788888888888887656677788899999
Q ss_pred EEeeccccCCCCChhhhcCCCCccEEEcccCc-cccccCcccccCCcccEEecCCCcccccCCcccCCCCCCC
Q 040632 172 LNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN-LMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 172 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
|++++|.+++..+..+. .+++|++|++++|. +. .++ .+..+++|+.|++++|++++ .+ .+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 99999999855666655 79999999999998 55 455 68999999999999999995 33 677777764
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=7.6e-19 Score=139.58 Aligned_cols=176 Identities=24% Similarity=0.202 Sum_probs=145.1
Q ss_pred cEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCcc-ccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 2 TALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 2 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
+.++.+++.++. +|..+ .+.++.|++++|.++...+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467888888874 55443 35689999999999988888887 899999999999999866667899999999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccc---cCCCcccEEEccccccCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEI---GNLENLEVLVLGENNLSG 157 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 157 (243)
|.+....+..+..+++|++|++++|.+....+..+..+.+|+.|++++|.++...+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99986666678899999999999999997778889999999999999999984443344 568899999999999986
Q ss_pred CCCcccccCCc--ccEEEeeccccC
Q 040632 158 LIPPTIFNIST--LWLLNLFGNQLS 180 (243)
Q Consensus 158 ~~~~~~~~~~~--L~~L~l~~~~~~ 180 (243)
..+..+..++. ++.|++.+|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455666665 488999998775
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.1e-19 Score=142.63 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=85.7
Q ss_pred CCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCcc-EEEcccCccccccCcccccCCccc
Q 040632 141 NLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIE-YLTLSSNNLMGTIPNSITNATKLI 219 (243)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~ 219 (243)
.+++|+++++.+|.++.+....|.++.+|+++++.+| ++ .++...+.++++|+ .+++.+ .+....+..|.+|++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 3788999999998888666678889999999999988 66 78888787899999 999988 66666778899999999
Q ss_pred EEecCCCcccccCCcccCCCCCCC
Q 040632 220 ALDLGSNSFSGHIPNTFGNLRHLD 243 (243)
Q Consensus 220 ~l~l~~~~~~~~~~~~~~~l~~L~ 243 (243)
.+++++|.++...+.+|.++++|+
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEEeCCCccCccchhhhcCCcchh
Confidence 999999999988888999998875
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.2e-18 Score=126.68 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=82.6
Q ss_pred EEEcccCcccccCCCCccccccccEEEecccccCCCcc-ccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 27 SLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFP-SWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
.++++++.++. .|..+ .+.+++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555542 23222 2234555555555543322 23455555666666555555433444555556666666666
Q ss_pred cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccC
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 180 (243)
.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555444444555666666666666655444555555666666666666666555555666666666666666654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=127.43 Aligned_cols=154 Identities=24% Similarity=0.302 Sum_probs=126.1
Q ss_pred cEEEecccccCCCccccccCCCCccEEEccCcccccCCc-hhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecC
Q 040632 50 RVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIP-NSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAF 128 (243)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~ 128 (243)
+.++++++.+. .+|..+ ...+++|++++|.+....+ ..+..+++|++|++++|.++...+..+..+.+|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57889888887 456544 3567899999999885534 4478899999999999998877777889999999999999
Q ss_pred CCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 129 NNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 129 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCCcCC
Confidence 999866677788899999999999999877788888889999999999999833344444 788999999999988643
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.5e-19 Score=136.15 Aligned_cols=171 Identities=20% Similarity=0.331 Sum_probs=139.5
Q ss_pred CcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEE
Q 040632 21 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEML 100 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 100 (243)
.+.+++.++++++.+++.. .+..+++|+.|++++|.+. ..+ .+..+++|++|++++|.+.. .+. +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence 6777888889988887443 5788999999999999987 445 68889999999999999984 444 8899999999
Q ss_pred EeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccC
Q 040632 101 RAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 101 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 180 (243)
++++|.++.. +. +.. .+|+.|++++|.++. . ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 9999998753 32 333 889999999999874 3 3588899999999999999854 36778899999999999998
Q ss_pred CCCChhhhcCCCCccEEEcccCccccc
Q 040632 181 GHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 181 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
+ + ..+. .+++|++|++++|.+...
T Consensus 164 ~-~-~~l~-~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 N-T-GGLT-RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp B-C-TTST-TCCCCCEEEEEEEEEECC
T ss_pred c-h-HHhc-cCCCCCEEeCCCCcccCC
Confidence 4 4 3333 688999999999998754
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=8.6e-18 Score=125.15 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=108.5
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
+.++.+++.+. ..|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45666666665 333322 266777777777777666667777777777777777776444455677777888888877
Q ss_pred cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCC
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGH 182 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 182 (243)
.++...+..+..+++|++|++++|.++ ..|..+..+++|++|++++|.++...+..+..+++|+.|++.+|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 777655556677778888888888777 5666677778888888888887765555677778888888888877633
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.5e-20 Score=158.52 Aligned_cols=95 Identities=14% Similarity=-0.017 Sum_probs=56.7
Q ss_pred CCCcccEEEccccc--cCCCCCccc-ccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc-cCcccccCC
Q 040632 141 NLENLEVLVLGENN--LSGLIPPTI-FNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT-IPNSITNAT 216 (243)
Q Consensus 141 ~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 216 (243)
.+++|+.|+++.|. +++.....+ ..+++|++|++++|.+++.....+...+++|++|++++|.+++. .+..+..++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 35555555554332 221111112 23567777777777776433344444678888888888887543 333446678
Q ss_pred cccEEecCCCcccccCCcc
Q 040632 217 KLIALDLGSNSFSGHIPNT 235 (243)
Q Consensus 217 ~L~~l~l~~~~~~~~~~~~ 235 (243)
+|+.|++++|+++......
T Consensus 514 ~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp SCCEEEEESCBCCTTCTTG
T ss_pred ccCeeECcCCcCCHHHHHH
Confidence 8888888888877654433
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.4e-18 Score=128.08 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=136.4
Q ss_pred EEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcc
Q 040632 3 ALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS 82 (243)
Q Consensus 3 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (243)
.++++++.+++.. .+..+++|+.|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 4567777877544 478899999999999998843 3 68899999999999999985444 8899999999999999
Q ss_pred cccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcc
Q 040632 83 FTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPT 162 (243)
Q Consensus 83 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 162 (243)
+.. ++.. .. ++|++|++++|.++.. ..++.+++|+.|++++|.++.. + .+..+++|++|++++|.+++. ..
T Consensus 97 l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 97 LKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp CSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred cCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 984 4432 23 8999999999998853 3588999999999999998743 3 678899999999999999865 66
Q ss_pred cccCCcccEEEeeccccC
Q 040632 163 IFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 163 ~~~~~~L~~L~l~~~~~~ 180 (243)
+..+++|+.|++++|.++
T Consensus 168 l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp STTCCCCCEEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCccc
Confidence 788999999999999987
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=1.7e-16 Score=127.31 Aligned_cols=219 Identities=9% Similarity=0.032 Sum_probs=147.3
Q ss_pred CccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchh
Q 040632 11 LGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNS 90 (243)
Q Consensus 11 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 90 (243)
++.+...+|.++ +|+.+.+.. .+......+|.++++|+.+++..+.+.......|. +.+|+.+.+..+ +.......
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~a 221 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQA 221 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhH
Confidence 333334455553 466666654 45555566677777777777776666533344444 467777777644 44344556
Q ss_pred hhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccC-----CCCCccccc
Q 040632 91 LFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLS-----GLIPPTIFN 165 (243)
Q Consensus 91 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~ 165 (243)
|.+|++|+.+.+..+ ++......|.+ .+|+.+.+.. .++.....+|..|++|+.+.+.++.+. ......|.+
T Consensus 222 F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 777777777777664 44445555655 5677777754 344456677888888999988877553 344567888
Q ss_pred CCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCcccCCCC
Q 040632 166 ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPNTFGNLR 240 (243)
Q Consensus 166 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~ 240 (243)
|++|+.+.+.. .++ .++...+.++++|+.+.+.++ +.......|.+| +|+.+++.+|.+.......|..++
T Consensus 299 c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 299 CPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred CccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 88999999884 465 677777778889999999665 555667778888 899999999888766667777764
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=5.9e-20 Score=154.99 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=57.5
Q ss_pred CcEEecCCCC-Cccc-cCCccCCcccccEEEcccCcccccCC----CCccccccccEEEecccccCC----CccccccCC
Q 040632 1 VTALNLSDMG-LGGT-IPRHLGNLSFLVSLDISENNFHGHLP----KELGQLRRLRVMRFAYNKLSG----SFPSWIGVL 70 (243)
Q Consensus 1 l~~l~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l 70 (243)
|+.|++++|. +... ++....++++|++|++++|.+.+... ..+..+++|+.|+++.|.+.+ .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 4566676664 2211 11222366777777777776653321 223456677777777666541 223334556
Q ss_pred CCccEEEccCcccccCCchhhhccCCccEEEeec
Q 040632 71 SKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQS 104 (243)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 104 (243)
++|++|++++|.+. .++..+..+++|++++++.
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccc
Confidence 77777777776665 3445555666666666653
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=5.2e-17 Score=115.13 Aligned_cols=136 Identities=21% Similarity=0.181 Sum_probs=83.4
Q ss_pred CCccEEEeecccCC-ccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEE
Q 040632 95 SRLEMLRAQSNIIG-GTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLN 173 (243)
Q Consensus 95 ~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 173 (243)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 23344445555566666666555432 4455566666666666666654555555567777777
Q ss_pred eeccccCCCCCh-hhhcCCCCccEEEcccCccccccC---cccccCCcccEEecCCCcccccCCc
Q 040632 174 LFGNQLSGHLPS-TIGHSLRNIEYLTLSSNNLMGTIP---NSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 174 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
+++|.++ .++. ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+. ..|+
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 7777776 4431 233367788888888888775444 36777888888888888777 4443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=8.3e-20 Score=152.67 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=116.7
Q ss_pred cccccccEEEecccccCCCccccccCCCCccEEEccCcc-------------cccCCchhhhccCCccEEE-eecccCCc
Q 040632 44 GQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS-------------FTGPIPNSLFNLSRLEMLR-AQSNIIGG 109 (243)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~l~-l~~~~~~~ 109 (243)
..++.|+.|+++.|.+. .+|..++++++|+.|+++++. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666665 456666666666666664443 2233444555566666665 33332110
Q ss_pred cCCC------ccC--CCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCC
Q 040632 110 TIPS------RIG--NLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSG 181 (243)
Q Consensus 110 ~~~~------~l~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 181 (243)
.+. .+. ....|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 499 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-
Confidence 000 000 0124777888888776 3554 777778888888888877 56777778888888888888887
Q ss_pred CCChhhhcCCCCccEEEcccCcccccc-CcccccCCcccEEecCCCcccccCC
Q 040632 182 HLPSTIGHSLRNIEYLTLSSNNLMGTI-PNSITNATKLIALDLGSNSFSGHIP 233 (243)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~ 233 (243)
.+| .+. .+++|++|++++|.+++.. |..+..+++|+.|++++|++++.++
T Consensus 500 ~lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 466 444 6788888888888887665 7778888888888888888876544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.1e-19 Score=150.28 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=156.1
Q ss_pred CCcccccEEEcccCcccccCCCCccccccccEEEecccc-------------cCCCccccccCCCCccEEE-ccCccccc
Q 040632 20 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNK-------------LSGSFPSWIGVLSKLRILR-LNNNSFTG 85 (243)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 85 (243)
..+++|+.|+++++.+. ..|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999887 668889999999999987664 3345566777888899888 5555443
Q ss_pred CCch------hhhc--cCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCC
Q 040632 86 PIPN------SLFN--LSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSG 157 (243)
Q Consensus 86 ~~~~------~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 157 (243)
.++. .+.. ...|+.|++++|.++. .|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1211 1111 2368999999999985 565 899999999999999998 788899999999999999999986
Q ss_pred CCCcccccCCcccEEEeeccccCCCC-ChhhhcCCCCccEEEcccCccccccCcc---cccCCcccEEec
Q 040632 158 LIPPTIFNISTLWLLNLFGNQLSGHL-PSTIGHSLRNIEYLTLSSNNLMGTIPNS---ITNATKLIALDL 223 (243)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~l~l 223 (243)
+| .+..+++|+.|++++|.+++.. |..+. .+++|++|++++|.+.+..+.. +..+|+|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 45 7889999999999999999444 67766 7999999999999998664432 345888998864
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=8.6e-17 Score=113.98 Aligned_cols=134 Identities=17% Similarity=0.110 Sum_probs=113.9
Q ss_pred CcccccEEEcccCccc-ccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccE
Q 040632 21 NLSFLVSLDISENNFH-GHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEM 99 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 99 (243)
..++++.|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999987 56777789999999999999998854 67888999999999999999667777788999999
Q ss_pred EEeecccCCccC-CCccCCCCCccEEeecCCCccccCC---ccccCCCcccEEEccccccC
Q 040632 100 LRAQSNIIGGTI-PSRIGNLSKLVNLGLAFNNLQGEIP---TEIGNLENLEVLVLGENNLS 156 (243)
Q Consensus 100 l~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 156 (243)
|++++|.++... +..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999887532 2678889999999999999884444 37888999999999999876
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=7.8e-18 Score=144.75 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCC
Q 040632 39 LPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNL 118 (243)
Q Consensus 39 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 118 (243)
.+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455566666666666666665 44444445666666666666666 55666666666666666666665 445566666
Q ss_pred CCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCC-cccEEEeeccccCCCCChhhhcCCCCccEE
Q 040632 119 SKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNIS-TLWLLNLFGNQLSGHLPSTIGHSLRNIEYL 197 (243)
Q Consensus 119 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 197 (243)
.+|++|++++|.+. .+|..+..+++|++|++++|.+++..|..+.... ....+++.+|.+++.+| ..+..|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l 364 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFI 364 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------ccccee
Confidence 66666666666665 4455566666666666666666554444433221 11234555555554333 234455
Q ss_pred EcccC--------ccccccCcccccCCcccEEecCCCccc
Q 040632 198 TLSSN--------NLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 198 ~l~~~--------~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
+++.| .+....+..+..+..+....+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 55555 122122223334444555566666553
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.7e-16 Score=112.56 Aligned_cols=131 Identities=25% Similarity=0.361 Sum_probs=96.3
Q ss_pred ccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCC-ccCCCCCccEEeecCCCccccCCccccCCCcccEEEcc
Q 040632 73 LRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPS-RIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLG 151 (243)
Q Consensus 73 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 151 (243)
.++++++++.++ .+|..+. ..++.|++++|.+....+. .++.+++|++|++++|.++...+..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 367888888776 5565433 3788888888887755443 36778888888888888876667777888888888888
Q ss_pred ccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 152 ENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
+|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCCccCc
Confidence 8888776666677778888888888888744444443 677888888888887644
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=2.5e-15 Score=120.56 Aligned_cols=219 Identities=9% Similarity=0.012 Sum_probs=173.1
Q ss_pred CcEEecCCCCCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 1 VTALNLSDMGLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 1 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
|+.+.+.. .+..+....|.+|++|+.+++.++.++.....+|. +..|+.+.+..+ +.......|..+++|+.+.+..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 35566664 56656667899999999999999999878888887 589999999854 5546667899999999999987
Q ss_pred cccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCcc-----ccCCccccCCCcccEEEcccccc
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQ-----GEIPTEIGNLENLEVLVLGENNL 155 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~ 155 (243)
+ +.......|.+ .+|+.+.+.. .+.......|..|.+|+.+.+.++... ......+..|++|+.+.+.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 5 44244455666 7899999954 455577788999999999999887654 35667889999999999984 46
Q ss_pred CCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCC-cccEEecCCCccc
Q 040632 156 SGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNAT-KLIALDLGSNSFS 229 (243)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 229 (243)
.......|.+|.+|+++.+..+ ++ .+....+.++ +|+.+++.+|.........+.+++ .++.|++-.+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 6555678889999999999665 55 6777777788 999999999988766667787775 6889998877654
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.4e-17 Score=143.16 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=109.3
Q ss_pred ccccEEEcccCcccccCCCCccccccccEEE-----ecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCc
Q 040632 23 SFLVSLDISENNFHGHLPKELGQLRRLRVMR-----FAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRL 97 (243)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 97 (243)
+.++.|++.++.+... +..+.....|..+. +..+.+. ..+..+..++.|+.|++++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5567778877766642 32222222233322 2233333 44667778888999999998888 677777788889
Q ss_pred cEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeecc
Q 040632 98 EMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGN 177 (243)
Q Consensus 98 ~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 177 (243)
++|+|++|.++ .+|..++.+.+|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999998888 67777888889999999998888 66888888888999999988887 55777888888999999999
Q ss_pred ccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCC
Q 040632 178 QLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSN 226 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 226 (243)
.+++..+..+.........+++++|.+.+.+|.. |+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 8886555554421112234678888887666653 345555555
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.8e-16 Score=110.05 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=105.7
Q ss_pred CcccccEEEcccCccc-ccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccE
Q 040632 21 NLSFLVSLDISENNFH-GHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEM 99 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 99 (243)
..++++.|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578899999999887 56777888899999999999988754 66888999999999999988657777778999999
Q ss_pred EEeecccCCcc-CCCccCCCCCccEEeecCCCccccCC---ccccCCCcccEEEcc
Q 040632 100 LRAQSNIIGGT-IPSRIGNLSKLVNLGLAFNNLQGEIP---TEIGNLENLEVLVLG 151 (243)
Q Consensus 100 l~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 151 (243)
|++++|.++.. .+..++.+++|+++++++|.++...+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999988753 23668888999999999998874444 467788899998875
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.8e-16 Score=109.10 Aligned_cols=126 Identities=22% Similarity=0.227 Sum_probs=75.3
Q ss_pred CCccEEEeecccCC-ccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEE
Q 040632 95 SRLEMLRAQSNIIG-GTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLN 173 (243)
Q Consensus 95 ~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 173 (243)
++++.|++++|.+. ...+..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666665554 34444555566666666666665533 4455566666666666666654555555566677777
Q ss_pred eeccccCCCCC--hhhhcCCCCccEEEcccCccccccC---cccccCCcccEEecC
Q 040632 174 LFGNQLSGHLP--STIGHSLRNIEYLTLSSNNLMGTIP---NSITNATKLIALDLG 224 (243)
Q Consensus 174 l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~ 224 (243)
+++|.++ .++ ..+ ..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~-~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIK-DLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCC-SHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCC-ChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777665 332 233 356777777777777765443 356667777777665
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=6.2e-19 Score=148.75 Aligned_cols=137 Identities=14% Similarity=0.032 Sum_probs=80.3
Q ss_pred cCCccEEEeecccCCccCCCccC-CCCCccEEeec--C----CCcccc-----CCccccCCCcccEEEccccccCCCCCc
Q 040632 94 LSRLEMLRAQSNIIGGTIPSRIG-NLSKLVNLGLA--F----NNLQGE-----IPTEIGNLENLEVLVLGENNLSGLIPP 161 (243)
Q Consensus 94 ~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~l~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 161 (243)
+++|+.|.+..+.++......+. .+++|+.|++. + +.++.. .+..+..+++|+.|++++ .++.....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55555555554444432222222 35667777776 2 222211 111244566777777765 33322222
Q ss_pred cccc-CCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccC-cccccCCcccEEecCCCccccc
Q 040632 162 TIFN-ISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIP-NSITNATKLIALDLGSNSFSGH 231 (243)
Q Consensus 162 ~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~ 231 (243)
.+.. +++|+.|++++|.+++.....+...+++|++|++++|.+++... .....+++|+.|++++|+++..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 2333 67788888888887755555554568888888888888854332 2345678888888888887543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.7e-15 Score=109.58 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=81.2
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccc-cccCCCCccEEEccCcccccCCchhhhccCCccEEEeec
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPS-WIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQS 104 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 104 (243)
+.++++++.++ ..|..+. ..++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666654 3333222 2566666666666533332 356666666666666666655556666666777777777
Q ss_pred ccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCC
Q 040632 105 NIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGL 158 (243)
Q Consensus 105 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 158 (243)
|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655555566677777777777776655566666677777777777776543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=3.2e-15 Score=108.25 Aligned_cols=127 Identities=24% Similarity=0.371 Sum_probs=96.8
Q ss_pred cEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEcccc
Q 040632 74 RILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGEN 153 (243)
Q Consensus 74 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 153 (243)
+.++++++.+. .+|..+. ++++.|++++|.++ ..+..+..+.+|+.|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777 5555432 57888888888877 55567778888888888888887666667788888888888888
Q ss_pred ccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 154 NLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 888766667777888888888888887 666665556788888888888775
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=3.2e-15 Score=106.80 Aligned_cols=132 Identities=25% Similarity=0.274 Sum_probs=94.2
Q ss_pred CccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEcc
Q 040632 72 KLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLG 151 (243)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 151 (243)
..+.++++++.+. .+|..+ .++++.|++++|.+....+..++.+++|++|++++|.++...+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567777777776 445432 2578888888887775555566777888888888887775555556777788888888
Q ss_pred ccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccc
Q 040632 152 ENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGT 207 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 207 (243)
+|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 88877655555667778888888888877 66666555677888888888877643
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.9e-15 Score=116.19 Aligned_cols=197 Identities=13% Similarity=0.061 Sum_probs=146.1
Q ss_pred cccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCccc----ccCCchhhhccCCc
Q 040632 22 LSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSF----TGPIPNSLFNLSRL 97 (243)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~L 97 (243)
+++|+.+++.+ .++.+.+.+|..+++|+.+++..+.+....+..|..+.++..+....... .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 99999999998 78878888999999999999999887656667787777777777655321 11112223344444
Q ss_pred c--------------------------EEEeecccCCccCCCcc-CCCCCccEEeecCCCccccCCccccCCCcccEEEc
Q 040632 98 E--------------------------MLRAQSNIIGGTIPSRI-GNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVL 150 (243)
Q Consensus 98 ~--------------------------~l~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 150 (243)
+ .+.+.+.-.. .....+ ..+.+|+.++++.|.++.+...+|..|.+|+++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 3 3333332111 000111 13788999999998888677778999999999999
Q ss_pred cccccCCCCCcccccCCccc-EEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEec
Q 040632 151 GENNLSGLIPPTIFNISTLW-LLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDL 223 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 223 (243)
..+ +..+...+|.++.+|+ ++.+.+ .++ .++...+.++++|+.+++.++.+....+..|.+|++|+.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 887 6656667889999999 999988 676 777777778999999999999998777888999999999874
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=3e-18 Score=144.59 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=38.2
Q ss_pred CcccccEEEcccCcccccCCCCcc-ccccccEEEeccc-ccCCC-ccccccCCCCccEEEccCcccccCCchhh----hc
Q 040632 21 NLSFLVSLDISENNFHGHLPKELG-QLRRLRVMRFAYN-KLSGS-FPSWIGVLSKLRILRLNNNSFTGPIPNSL----FN 93 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~ 93 (243)
.+++|+.|+++++.+++..+..+. .+++|++|++++| .+... .+..+..+++|++|++++|.+.+..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445555666655555433333332 3555555555555 22211 22223345555555555555442222222 23
Q ss_pred cCCccEEEeecc
Q 040632 94 LSRLEMLRAQSN 105 (243)
Q Consensus 94 ~~~L~~l~l~~~ 105 (243)
+++|+.|++.++
T Consensus 183 ~~~L~~L~l~~~ 194 (594)
T 2p1m_B 183 YTSLVSLNISCL 194 (594)
T ss_dssp CCCCCEEECTTC
T ss_pred CCcCcEEEeccc
Confidence 345555555544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=103.95 Aligned_cols=130 Identities=24% Similarity=0.187 Sum_probs=85.1
Q ss_pred ccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecC
Q 040632 49 LRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAF 128 (243)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~ 128 (243)
.+.++.+++.+. ..|..+ .+++++|++++|.+....+..+..+++|++|++++|.++...+..++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666665 334322 35777777777777644444566777777777777777655555566777777777777
Q ss_pred CCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCC
Q 040632 129 NNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSG 181 (243)
Q Consensus 129 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 181 (243)
|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77764444456667777777777777765544445666777777777777663
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=105.24 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=84.7
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
+.++++++.++. .|..+ .++++.|++++|.+. .+|..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666653 33322 246777777777766 45566777777777777777777555556677777777777777
Q ss_pred cCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccC
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLS 156 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 156 (243)
.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777776444445666777777777777664
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=3.3e-15 Score=106.60 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=53.8
Q ss_pred ccCCCCccEEEccCcccccCCchhhhcc-CCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcc
Q 040632 67 IGVLSKLRILRLNNNSFTGPIPNSLFNL-SRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENL 145 (243)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 145 (243)
+.++++|++|++++|.+. .++. +..+ ++|++|++++|.++.. ..++.+++|++|++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445666677777666666 3333 3233 3666666666655532 345555555555555555542222223444455
Q ss_pred cEEEccccccCCCCCc--ccccCCcccEEEeeccccC
Q 040632 146 EVLVLGENNLSGLIPP--TIFNISTLWLLNLFGNQLS 180 (243)
Q Consensus 146 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 180 (243)
++|++++|.+.. ++. .+..+++|+.|++++|.++
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 555555554432 222 3334444444444444443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=9.7e-15 Score=104.17 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=87.6
Q ss_pred hhccCCccEEEeecccCCccCCCccCCCC-CccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcc
Q 040632 91 LFNLSRLEMLRAQSNIIGGTIPSRIGNLS-KLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTL 169 (243)
Q Consensus 91 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 169 (243)
+..+.+|+.|++++|.++. .+. +..+. +|++|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4456677777777777663 333 34443 777777777777633 456677777777777777775433444677777
Q ss_pred cEEEeeccccCCCCCh--hhhcCCCCccEEEcccCccccccCc----ccccCCcccEEecCCCccc
Q 040632 170 WLLNLFGNQLSGHLPS--TIGHSLRNIEYLTLSSNNLMGTIPN----SITNATKLIALDLGSNSFS 229 (243)
Q Consensus 170 ~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~ 229 (243)
++|++++|.++ .++. .+. .+++|++|++++|++.. .|. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777776 5554 333 57777777777777763 344 3677777777777777554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.6e-16 Score=115.61 Aligned_cols=132 Identities=22% Similarity=0.254 Sum_probs=83.0
Q ss_pred hhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcc
Q 040632 90 SLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTL 169 (243)
Q Consensus 90 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 169 (243)
.+..+++|++|++++|.+.. .+ .+..+++|++|++++|.++ ..+..+..+++|++|++++|.+++. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 44555555555555555443 33 4445555555555555554 3444445556777777777777643 3 46677788
Q ss_pred cEEEeeccccCCCCCh-hhhcCCCCccEEEcccCccccccCc----------ccccCCcccEEecCCCccc
Q 040632 170 WLLNLFGNQLSGHLPS-TIGHSLRNIEYLTLSSNNLMGTIPN----------SITNATKLIALDLGSNSFS 229 (243)
Q Consensus 170 ~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~~~~~ 229 (243)
+.|++++|.++ .++. .....+++|++|++++|++.+..|. .+..+++|+.|+ +++++
T Consensus 118 ~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888887 4443 2333688888888888888655443 267788888876 66665
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.4e-16 Score=115.88 Aligned_cols=153 Identities=23% Similarity=0.281 Sum_probs=95.6
Q ss_pred CcccccEEEcccCcccccCCC------CccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhcc
Q 040632 21 NLSFLVSLDISENNFHGHLPK------ELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNL 94 (243)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 94 (243)
....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .++..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344455555555555444443 56667777777777777663 44 5666777777777777766 556556666
Q ss_pred CCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCC-ccccCCCcccEEEccccccCCCCCc----------cc
Q 040632 95 SRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIP-TEIGNLENLEVLVLGENNLSGLIPP----------TI 163 (243)
Q Consensus 95 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~ 163 (243)
++|++|++++|.++. .+ .+..+++|++|++++|.++.... ..+..+++|+++++++|.+.+..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 777777777776663 23 45566677777777776653221 3566677777777777776543322 25
Q ss_pred ccCCcccEEEeeccccC
Q 040632 164 FNISTLWLLNLFGNQLS 180 (243)
Q Consensus 164 ~~~~~L~~L~l~~~~~~ 180 (243)
..+++|+.|+ ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6677888776 55554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.6e-13 Score=96.12 Aligned_cols=106 Identities=22% Similarity=0.199 Sum_probs=74.9
Q ss_pred ccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeec
Q 040632 97 LEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFG 176 (243)
Q Consensus 97 L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 176 (243)
.+.++++++.++ ..|..+ ..++++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777776 345444 36777888888877755566777777888888888877765555566777788888888
Q ss_pred cccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 177 NQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 177 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
|.++ .++...+.++++|++|++++|++..
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8777 5665545467778888888877753
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=4.7e-13 Score=95.15 Aligned_cols=105 Identities=21% Similarity=0.267 Sum_probs=78.6
Q ss_pred cEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeecc
Q 040632 98 EMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGN 177 (243)
Q Consensus 98 ~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 177 (243)
+.++++++.++ ..|..+. .+|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56788887776 4555443 77888888888887666777788888888888888887655555677788888888888
Q ss_pred ccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 178 QLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
.++ .++...+..+++|++|++++|++..
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 887 6666655567888888888888763
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=8.7e-13 Score=93.41 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=49.7
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
+.++++++.++. .|..+ .+.+++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 344555544442 22222 244555555555555444444555555555555555555333333445555555555555
Q ss_pred cCCccCCCccCCCCCccEEeecCCCc
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNL 131 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~ 131 (243)
.+....+..+..+++|++|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55543333455555555555555544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=2.2e-12 Score=91.69 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=66.5
Q ss_pred cEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccCCccEEEeecc
Q 040632 26 VSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLSRLEMLRAQSN 105 (243)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 105 (243)
+.++++++.+. ..|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 55666666665 333333 256677777777766555666667777777777777776433344566777777777777
Q ss_pred cCCccCCCccCCCCCccEEeecCCCcc
Q 040632 106 IIGGTIPSRIGNLSKLVNLGLAFNNLQ 132 (243)
Q Consensus 106 ~~~~~~~~~l~~~~~L~~l~l~~~~~~ 132 (243)
.+....+..+..+++|++|++.+|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 766544445666777777777777654
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=2.8e-11 Score=97.09 Aligned_cols=99 Identities=11% Similarity=0.214 Sum_probs=42.6
Q ss_pred ccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcc
Q 040632 139 IGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKL 218 (243)
Q Consensus 139 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (243)
+..|..|+.+.+..+... .....+..+..|+.+.+. +.++ .++...+.++.+|+.+++..+ ++......|.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 334444555554332211 222333444444444443 2222 344444444555555555432 222333445555555
Q ss_pred cEEecCCCcccccCCcccCCCCCC
Q 040632 219 IALDLGSNSFSGHIPNTFGNLRHL 242 (243)
Q Consensus 219 ~~l~l~~~~~~~~~~~~~~~l~~L 242 (243)
+.+.+-.+ ++.....+|.++.+|
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCC
Confidence 55555332 333444455555444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=4.8e-15 Score=117.84 Aligned_cols=184 Identities=16% Similarity=0.116 Sum_probs=112.8
Q ss_pred cccccEEEecccccCCCccccc----c-CCCCccEEEccCcccccCCchhh-hccCCccEEEeecccCCccCCCcc----
Q 040632 46 LRRLRVMRFAYNKLSGSFPSWI----G-VLSKLRILRLNNNSFTGPIPNSL-FNLSRLEMLRAQSNIIGGTIPSRI---- 115 (243)
Q Consensus 46 l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~l---- 115 (243)
++.|+.|++++|.+.......+ . ..++|++|++++|.+.......+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4568888888887763322222 2 23688888888888764333322 345678888888887764333332
Q ss_pred -CCCCCccEEeecCCCcccc----CCccccCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChh
Q 040632 116 -GNLSKLVNLGLAFNNLQGE----IPTEIGNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPST 186 (243)
Q Consensus 116 -~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 186 (243)
...++|++|++++|.+++. ++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456788888888887642 333446677888888888877632 2344556678888888888887433322
Q ss_pred hh---cCCCCccEEEcccCccccccCcccccC---C--cccEEe--cCCCccc
Q 040632 187 IG---HSLRNIEYLTLSSNNLMGTIPNSITNA---T--KLIALD--LGSNSFS 229 (243)
Q Consensus 187 ~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~l~--l~~~~~~ 229 (243)
+. ...+.|++|++++|.+.+.....+..+ . .++.+. +.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 22 135788888888888865433333222 1 156665 5555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=8.4e-15 Score=116.46 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=120.6
Q ss_pred CCCccEEEccCcccccCCchhhhc-----cCCccEEEeecccCCccCCCcc-CCCCCccEEeecCCCccccCCccc----
Q 040632 70 LSKLRILRLNNNSFTGPIPNSLFN-----LSRLEMLRAQSNIIGGTIPSRI-GNLSKLVNLGLAFNNLQGEIPTEI---- 139 (243)
Q Consensus 70 l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~---- 139 (243)
.++|+.|++++|.++......+.. .++|+.|++++|.++......+ ..+.+|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999987443333332 3699999999998864333233 235689999999999875433333
Q ss_pred -cCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCC----ChhhhcCCCCccEEEcccCccccc---
Q 040632 140 -GNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHL----PSTIGHSLRNIEYLTLSSNNLMGT--- 207 (243)
Q Consensus 140 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 207 (243)
...++|++|++++|.++.. ++..+...++|++|++++|.+++.. ...+. .++.|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHH
Confidence 3467899999999988632 2344467889999999999997433 22333 567999999999999753
Q ss_pred -cCcccccCCcccEEecCCCcccccCCccc
Q 040632 208 -IPNSITNATKLIALDLGSNSFSGHIPNTF 236 (243)
Q Consensus 208 -~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 236 (243)
+...+..+++|+.|++++|.++......+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33445677999999999999986554444
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.1e-11 Score=97.87 Aligned_cols=216 Identities=11% Similarity=0.052 Sum_probs=127.8
Q ss_pred CCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccc-----------
Q 040632 16 PRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFT----------- 84 (243)
Q Consensus 16 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------- 84 (243)
..+|.++.+|+.+.+..+ +......+|..+.+|+.+.+..+ +.......+.++..|+.+.+..+...
T Consensus 155 ~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 456888999999998765 33466677888888888888654 22233445555555555555433221
Q ss_pred ----------cCCchhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccc
Q 040632 85 ----------GPIPNSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENN 154 (243)
Q Consensus 85 ----------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 154 (243)
......+..+..++.+.+..+... .....+..+..++.+......+ ....+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence 011223344444555554443221 3333444555555554443221 2234566677777777544
Q ss_pred cCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCc
Q 040632 155 LSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
+..+...++.++.+|+++++..+ ++ .+....+.+|.+|+.+++..+ +.......|.+|++|+.+++..+ ++ ....
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~ 382 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRY 382 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhh
Confidence 33334456777788888888644 54 566666667888888888765 55455667888888888888654 22 2345
Q ss_pred ccCCCCCCC
Q 040632 235 TFGNLRHLD 243 (243)
Q Consensus 235 ~~~~l~~L~ 243 (243)
+|.++++|+
T Consensus 383 ~F~~c~~L~ 391 (394)
T 4fs7_A 383 DFEDTTKFK 391 (394)
T ss_dssp GBCTTCEEE
T ss_pred eecCCCCCc
Confidence 677776653
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=4.3e-11 Score=96.05 Aligned_cols=216 Identities=13% Similarity=0.050 Sum_probs=138.2
Q ss_pred CCccCCcccccEEEcccCcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCchhhhccC
Q 040632 16 PRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLS 95 (243)
Q Consensus 16 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 95 (243)
..+|.++..+....... .......+|.++.+|+.+.+..+... .....|..+.+|+.+.+..+ +.......+.++.
T Consensus 133 ~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 34566665443333222 23345678999999999999765332 45567888999999998765 3323344566666
Q ss_pred CccEEEeecccCC---------------------ccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccc
Q 040632 96 RLEMLRAQSNIIG---------------------GTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENN 154 (243)
Q Consensus 96 ~L~~l~l~~~~~~---------------------~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 154 (243)
.|+.+.+..+... ......+..+..++.+.+..+... .....+..+..++.+......
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 6666655443211 112223344455555555443322 334445555555555554433
Q ss_pred cCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCCcccEEecCCCcccccCCc
Q 040632 155 LSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFSGHIPN 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 234 (243)
+. ...+..+.+|+++.+..+ ++ .+....+.++.+|+.+++.++ +.......|.+|.+|+.+++..+ ++.....
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 22 245667888999988765 44 666777778999999999765 55566778999999999999877 7767788
Q ss_pred ccCCCCCCC
Q 040632 235 TFGNLRHLD 243 (243)
Q Consensus 235 ~~~~l~~L~ 243 (243)
+|.++++|+
T Consensus 361 aF~~C~~L~ 369 (394)
T 4fs7_A 361 AFQGCINLK 369 (394)
T ss_dssp TBTTCTTCC
T ss_pred HhhCCCCCC
Confidence 999998875
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=1.9e-10 Score=92.21 Aligned_cols=112 Identities=9% Similarity=0.098 Sum_probs=84.9
Q ss_pred CccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCC
Q 040632 113 SRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLR 192 (243)
Q Consensus 113 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 192 (243)
..|..+..|+.+.+...... +...++..|..|+.+.+.. .++......|.+|.+|+++.+..+ ++ .+....+.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence 45667788888888765443 5667788899999999864 344344567888999999999765 54 67777777899
Q ss_pred CccEEEcccCccccccCcccccCCcccEEecCCCccc
Q 040632 193 NIEYLTLSSNNLMGTIPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
+|+.+.+..+ +.......|.+|.+|+.+++.++...
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 9999999765 55566678999999999999887543
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=2.6e-09 Score=85.22 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=51.2
Q ss_pred CccccCCCcccEEEccccccCCCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccC
Q 040632 136 PTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNA 215 (243)
Q Consensus 136 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 215 (243)
..++..+.+|+.+.+..+ +.......+.++.+|+++.+.++.++ .++...+.++.+|+.+.+..+ +.......|.+|
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 334444455555554332 22222334555666666666665555 555555555666666666543 333444556666
Q ss_pred CcccEEecCCCcccccCCcccCCC
Q 040632 216 TKLIALDLGSNSFSGHIPNTFGNL 239 (243)
Q Consensus 216 ~~L~~l~l~~~~~~~~~~~~~~~l 239 (243)
.+|+.+.+..+ ++.....+|.++
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCCCEEEECCc-cCEEchhHhhCC
Confidence 66666666433 443444455444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=8.7e-11 Score=92.61 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=81.9
Q ss_pred EEecCCC-CCccccCCccCCcccccEEEccc-CcccccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccC
Q 040632 3 ALNLSDM-GLGGTIPRHLGNLSFLVSLDISE-NNFHGHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNN 80 (243)
Q Consensus 3 ~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (243)
.++.+++ .++. +|. +..+++|+.|+|++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6764 666 88888999999986 888877778888999999999999988877777888899999999999
Q ss_pred cccccCCchhhhccCCccEEEeecccCC
Q 040632 81 NSFTGPIPNSLFNLSRLEMLRAQSNIIG 108 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 108 (243)
|.+....+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 998844444454444 899999888765
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=1e-10 Score=92.13 Aligned_cols=104 Identities=23% Similarity=0.221 Sum_probs=86.2
Q ss_pred EEEeecc-cCCccCCCccCCCCCccEEeecC-CCccccCCccccCCCcccEEEccccccCCCCCcccccCCcccEEEeec
Q 040632 99 MLRAQSN-IIGGTIPSRIGNLSKLVNLGLAF-NNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNISTLWLLNLFG 176 (243)
Q Consensus 99 ~l~l~~~-~~~~~~~~~l~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 176 (243)
.++++++ .++ .+|. +..+.+|+.|++++ |.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4676 88889999999996 888766667888999999999999999888778888999999999999
Q ss_pred cccCCCCChhhhcCCCCccEEEcccCcccc
Q 040632 177 NQLSGHLPSTIGHSLRNIEYLTLSSNNLMG 206 (243)
Q Consensus 177 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (243)
|.++ .++...+..++ |++|++.+|.+..
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 9998 77777665454 9999999998863
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=6.9e-11 Score=93.36 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCcccEEEccccccCCCCCccc---ccCCcccEEEeeccccCCCCChhhh---cCCCCccEEEcccCccc
Q 040632 142 LENLEVLVLGENNLSGLIPPTI---FNISTLWLLNLFGNQLSGHLPSTIG---HSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 205 (243)
+++|++|++.+|.+....+..+ ..+++|++|+++.|.+.+.....+. .++++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4555555555554432111111 1244555555555555432222222 12455555555555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=5.3e-11 Score=94.02 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=118.4
Q ss_pred cCCcccccEEEcccCccc---------ccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccccCCch
Q 040632 19 LGNLSFLVSLDISENNFH---------GHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFTGPIPN 89 (243)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 89 (243)
..++++|+.|.+...... ......+..+|+|+.|.++++.-. .++. +. +++|+.|.+..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 456789999998654321 112233456799999999887312 2233 43 89999999998887644334
Q ss_pred hhh--ccCCccEEEeecc--cCCcc-----CCCcc--CCCCCccEEeecCCCccccCCcccc---CCCcccEEEcccccc
Q 040632 90 SLF--NLSRLEMLRAQSN--IIGGT-----IPSRI--GNLSKLVNLGLAFNNLQGEIPTEIG---NLENLEVLVLGENNL 155 (243)
Q Consensus 90 ~~~--~~~~L~~l~l~~~--~~~~~-----~~~~l--~~~~~L~~l~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 155 (243)
.+. .+|+|+.|+|..+ ..... ....+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 443 6899999998632 11111 11122 3578999999999988643332332 467999999999988
Q ss_pred CCC----CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCc
Q 040632 156 SGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNN 203 (243)
Q Consensus 156 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (243)
... ++..+..+++|+.|++++|.+++.....+.+.+ ...++++.+.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 643 223345678999999999998865555555323 3567887765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=3.2e-08 Score=78.85 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=69.5
Q ss_pred hhhhccCCccEEEeecccCCccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccccccCCCCCcccccCCc
Q 040632 89 NSLFNLSRLEMLRAQSNIIGGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENNLSGLIPPTIFNIST 168 (243)
Q Consensus 89 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 168 (243)
..+.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +.......+..|.+|+.+.+.++.++......|.+|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34455566666666544 33344455566666666666543 22244445666677777777666555444456666677
Q ss_pred ccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccCcccccCC
Q 040632 169 LWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIPNSITNAT 216 (243)
Q Consensus 169 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (243)
|+++.+..+ ++ .+....+.+|.+|+.+.+..+ +.......|.+|+
T Consensus 312 L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777777543 43 455555556667776666543 3334445555554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=1.1e-08 Score=71.90 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCccEEeecCCCccccCCccccCCCcccEEEccccc-cCCCCCccccc----CCcccEEEeeccc-cCCCCChhhhcCCC
Q 040632 119 SKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGENN-LSGLIPPTIFN----ISTLWLLNLFGNQ-LSGHLPSTIGHSLR 192 (243)
Q Consensus 119 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 192 (243)
..|++|++++|.+++.....+..+++|++|++++|. ++...-..+.. +++|++|++++|. +++..-..+. +++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 457888888887776666666777778888887774 44221122332 2467777777774 6655555554 577
Q ss_pred CccEEEcccCcc
Q 040632 193 NIEYLTLSSNNL 204 (243)
Q Consensus 193 ~L~~L~l~~~~~ 204 (243)
+|++|++++|+-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 777777777753
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=4.6e-09 Score=75.15 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=43.8
Q ss_pred cCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCC----hhhhcCCCCccEEEc--ccCccccc--
Q 040632 140 GNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLP----STIGHSLRNIEYLTL--SSNNLMGT-- 207 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l--~~~~~~~~-- 207 (243)
...++|++|++++|.+... +...+...+.|++|++++|.+.+... ..+. ..+.|++|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHH
Confidence 3344555555555544321 12223344556666666665553222 2222 3455666666 55666432
Q ss_pred --cCcccccCCcccEEecCCCccc
Q 040632 208 --IPNSITNATKLIALDLGSNSFS 229 (243)
Q Consensus 208 --~~~~~~~~~~L~~l~l~~~~~~ 229 (243)
+...+...++|+.|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233445566666666666654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=3.6e-08 Score=69.17 Aligned_cols=84 Identities=10% Similarity=-0.051 Sum_probs=46.2
Q ss_pred ccccEEEecccccCCCccccccCCCCccEEEccCcc-cccCCchhhhc----cCCccEEEeeccc-CCccCCCccCCCCC
Q 040632 47 RRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNS-FTGPIPNSLFN----LSRLEMLRAQSNI-IGGTIPSRIGNLSK 120 (243)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~l~l~~~~-~~~~~~~~l~~~~~ 120 (243)
..|+.|++++|.+++..-..+..+++|++|++++|. +++..-..+.. ++.|++|++++|. ++...-..++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 346666666666554444455566666666666663 44222223333 2356666666663 55333334556666
Q ss_pred ccEEeecCCC
Q 040632 121 LVNLGLAFNN 130 (243)
Q Consensus 121 L~~l~l~~~~ 130 (243)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.1e-08 Score=71.72 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=30.5
Q ss_pred cccccccEEEeccc-ccCCC----ccccccCCCCccEEEccCcccccCC----chhhhccCCccEEEeecccCC
Q 040632 44 GQLRRLRVMRFAYN-KLSGS----FPSWIGVLSKLRILRLNNNSFTGPI----PNSLFNLSRLEMLRAQSNIIG 108 (243)
Q Consensus 44 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~ 108 (243)
...+.|++|++++| .+... +...+...++|++|++++|.+.... ...+...+.|++|++++|.++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455666666555 44321 2223344555666666655554221 222333445555555555444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=9e-07 Score=66.62 Aligned_cols=82 Identities=30% Similarity=0.334 Sum_probs=51.0
Q ss_pred cCCCcccEEEccccccCCC--CCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccccccC-------c
Q 040632 140 GNLENLEVLVLGENNLSGL--IPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLMGTIP-------N 210 (243)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~ 210 (243)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.-....+..+ +|++|++++|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3466788888888877653 334455677888888888877632111112123 77888888887765433 2
Q ss_pred ccccCCcccEEe
Q 040632 211 SITNATKLIALD 222 (243)
Q Consensus 211 ~~~~~~~L~~l~ 222 (243)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.7e-06 Score=65.16 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=48.2
Q ss_pred cccccccEEEecccccCC--CccccccCCCCccEEEccCcccccCCchhhhccC--CccEEEeecccCCccCCC------
Q 040632 44 GQLRRLRVMRFAYNKLSG--SFPSWIGVLSKLRILRLNNNSFTGPIPNSLFNLS--RLEMLRAQSNIIGGTIPS------ 113 (243)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~------ 113 (243)
.++++|+.|++++|.+.+ .++..+..+++|+.|++++|.+... ..+..+. +|++|++.+|.+....+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777764 2234555677777777777777632 2222333 777777777766543331
Q ss_pred -ccCCCCCccEEe
Q 040632 114 -RIGNLSKLVNLG 125 (243)
Q Consensus 114 -~l~~~~~L~~l~ 125 (243)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244566676664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=3e-05 Score=55.36 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=43.8
Q ss_pred ccCCCcccEEEccccccCCC----CCcccccCCcccEEEeeccccCCCCChhhhc---CCCCccEEEcccCc---ccc--
Q 040632 139 IGNLENLEVLVLGENNLSGL----IPPTIFNISTLWLLNLFGNQLSGHLPSTIGH---SLRNIEYLTLSSNN---LMG-- 206 (243)
Q Consensus 139 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~---~~~-- 206 (243)
+..-+.|+.|++++|.+... +.+.+.....|++|+++.|.|.+.....+.+ .-+.|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33344555555555555311 2233344556666666666665433333332 22346666666542 221
Q ss_pred --ccCcccccCCcccEEecCCCcc
Q 040632 207 --TIPNSITNATKLIALDLGSNSF 228 (243)
Q Consensus 207 --~~~~~~~~~~~L~~l~l~~~~~ 228 (243)
.+...+...++|..|+++.+.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 1223345556666666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.0016 Score=43.26 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=43.8
Q ss_pred cEEEccccccC-CCCCcccccCCcccEEEeeccccCCCCChhhhcCCCCccEEEcccCccc
Q 040632 146 EVLVLGENNLS-GLIPPTIFNISTLWLLNLFGNQLSGHLPSTIGHSLRNIEYLTLSSNNLM 205 (243)
Q Consensus 146 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (243)
..++-++++++ ..+|..+ ..+++.|++++|.++ .++...+..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 46666777665 2345433 357999999999998 888888878999999999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00031 Score=50.13 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=27.5
Q ss_pred cccccEEEeccc-ccCCC----ccccccCCCCccEEEccCcccccC----CchhhhccCCccEEEeecccCC
Q 040632 46 LRRLRVMRFAYN-KLSGS----FPSWIGVLSKLRILRLNNNSFTGP----IPNSLFNLSRLEMLRAQSNIIG 108 (243)
Q Consensus 46 l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 108 (243)
-+.|+.|+++++ .+... +...+....+|+.|++++|.+... +...+.....|++|+|++|.++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344555555543 33211 122334445555555555555421 2222333444555555555444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0039 Score=41.36 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=32.9
Q ss_pred EEEcccCccc-ccCCCCccccccccEEEecccccCCCccccccCCCCccEEEccCcccc
Q 040632 27 SLDISENNFH-GHLPKELGQLRRLRVMRFAYNKLSGSFPSWIGVLSKLRILRLNNNSFT 84 (243)
Q Consensus 27 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 84 (243)
.++.++..++ ...|..+ -+++++|+|++|.+....+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 1223211 234677777777776555556666777777777777665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.01 E-value=0.99 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=24.3
Q ss_pred CccCCCccCCCCCccEEeecCCCccccCCccccCCCcccEEEccc
Q 040632 108 GGTIPSRIGNLSKLVNLGLAFNNLQGEIPTEIGNLENLEVLVLGE 152 (243)
Q Consensus 108 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 152 (243)
+.+....|.+|.+|+.+.+..+. +.+...+|..|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 33444556666666666665543 224555566666666666544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.16 E-value=1.3 Score=27.51 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=28.0
Q ss_pred CCccccCCccCCcccccEEEcccCcccccCCCCccccccccEEEecc
Q 040632 10 GLGGTIPRHLGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMRFAY 56 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 56 (243)
.++.+-...|.+|..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444456667777777776654 3445556666777777776654
Done!