Your job contains 1 sequence.
>040633
MALWLPCPSPFSSLLLGSRQHTKTAIPRPFISKALTSNNSSSVSVSRIYSHPSLQTKCSG
SNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAF
VWFSRKESADLAVENMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040633
(167 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 253 1.1e-21 1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 155 2.8e-11 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 153 4.5e-11 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 157 8.2e-11 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 145 3.2e-10 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 138 1.8e-09 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 147 2.5e-09 1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 141 2.7e-09 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 139 2.8e-09 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 134 4.7e-09 1
UNIPROTKB|Q56JZ7 - symbol:ZCRB1 "Zinc finger CCHC-type an... 133 6.4e-09 1
UNIPROTKB|Q8TBF4 - symbol:ZCRB1 "Zinc finger CCHC-type an... 133 6.4e-09 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 141 7.0e-09 1
UNIPROTKB|E1BTK3 - symbol:ZCRB1 "Uncharacterized protein"... 132 8.4e-09 1
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi... 138 8.6e-09 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 142 8.9e-09 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 141 9.6e-09 1
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer... 135 1.1e-08 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 141 1.1e-08 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 141 1.1e-08 1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein... 136 1.2e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 130 1.2e-08 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 130 1.2e-08 1
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei... 135 1.5e-08 1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"... 135 1.6e-08 1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei... 135 1.6e-08 1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-... 135 1.6e-08 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 139 1.7e-08 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 139 1.7e-08 1
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 135 1.7e-08 1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 135 1.7e-08 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 139 1.7e-08 1
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"... 135 1.7e-08 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 139 1.8e-08 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 139 1.8e-08 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 139 1.8e-08 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 139 1.8e-08 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 139 1.8e-08 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 139 1.8e-08 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 139 1.9e-08 1
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"... 129 2.0e-08 1
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 129 2.0e-08 1
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA... 129 2.0e-08 1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot... 134 2.1e-08 1
ZFIN|ZDB-GENE-041210-114 - symbol:zcrb1 "zinc finger CCHC... 127 3.5e-08 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 132 3.8e-08 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 136 3.9e-08 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 125 4.2e-08 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 130 4.9e-08 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 135 4.9e-08 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 135 4.9e-08 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 135 5.1e-08 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 134 5.1e-08 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 124 5.3e-08 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 132 6.0e-08 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 134 6.0e-08 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 134 6.3e-08 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 134 6.5e-08 1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 123 6.8e-08 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 123 6.8e-08 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 130 7.2e-08 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 134 7.2e-08 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 133 7.8e-08 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 130 9.3e-08 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 132 1.0e-07 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 132 1.0e-07 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 121 1.1e-07 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 129 1.3e-07 1
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370... 126 1.4e-07 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 124 1.4e-07 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 120 1.4e-07 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 120 1.4e-07 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 120 1.4e-07 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 122 1.5e-07 1
WB|WBGene00016245 - symbol:C30B5.4 species:6239 "Caenorha... 125 1.7e-07 1
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif... 128 1.7e-07 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 119 1.8e-07 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 109 1.9e-07 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 129 2.0e-07 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 129 2.2e-07 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 129 2.2e-07 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 129 2.2e-07 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 129 2.3e-07 1
UNIPROTKB|G4NC92 - symbol:MGG_01109 "Nuclear cap-binding ... 118 2.3e-07 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 118 2.3e-07 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 124 2.5e-07 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 128 2.7e-07 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 117 2.9e-07 1
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 124 3.2e-07 1
DICTYBASE|DDB_G0284167 - symbol:DDB_G0284167 "RNA-binding... 122 3.3e-07 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 127 3.6e-07 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 116 3.8e-07 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 116 3.8e-07 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 116 3.8e-07 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 116 3.8e-07 1
UNIPROTKB|I3LK87 - symbol:RBMX2 "Uncharacterized protein"... 122 3.8e-07 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 121 4.1e-07 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 126 4.3e-07 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 126 4.5e-07 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 116 4.7e-07 1
WARNING: Descriptions of 679 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 47/93 (50%), Positives = 66/93 (70%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ +F+KG +S++EGR+KK FS+FG+V VKI+ + ++Q LG +VWF+ KE A AVE
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
MNGKFF GRFILVK + GLS+ R + + F
Sbjct: 137 AMNGKFFDGRFILVKFGQPGLSRRRRPHSDFLF 169
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/78 (37%), Positives = 51/78 (65%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I ++ LP S +E +K+ FS FGE+ +VK++ ++ K+ G AF+ F+ ++ A LA+E M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 137 NGKFFYGRFILVKIAETG 154
+ + + GR I + IA+ G
Sbjct: 102 DRRMYNGRMIYIDIAKPG 119
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/91 (32%), Positives = 54/91 (59%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T +++ GL TE ++ F QFG ++ + +V +K++ +P G AF+ + +E A A+
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRGRRTR 164
+ M+GKF GR I V+ A+T +R + R
Sbjct: 136 QGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 166
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 157 (60.3 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL +E ++ AF FGE+V+VKI+ +K+SK+ G AF+ ++ +E+A A++ M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 137 NGKFFYGRFILVKIAETG-LSKNRGR 161
NGK G I+V +A+T +NR +
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQNRSQ 369
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/72 (37%), Positives = 49/72 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+KG+ S TE + +AFSQ+G+V++V ++ +K+ +P G A+V FS KE A+ A+ +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 137 NGKFFYGRFILV 148
N + GR +++
Sbjct: 83 NAQLVDGRVVIL 94
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GLP +TEG V FSQ+GEVV + +V +K + + G F+ + + S LAV+N
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK + M + R+K+ FS++G+ + VK++T+ K G FV F + E A+ AVE
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSK-GFGFVSFEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ + V A+ + + + R++
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFE 281
Score = 115 (45.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +++AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQDAADRAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 141 (54.7 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ G+ M E +++ FS+FG V V+I+ E ++K G F+ FS E A A++N+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 137 NGKFFYGRFILVKIAE 152
N + FYGR + V+ A+
Sbjct: 163 NSQEFYGRVLNVQKAK 178
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 139 (54.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 82
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 83 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 114
Score = 108 (43.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 186
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 187 NGRIVATKPLYVALAQ 202
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVE 162
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 163 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE 194
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 133 (51.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCT 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 133 (51.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 141 (54.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 81
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 82 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 113
Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 185
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 186 NGRIVATKPLYVALAQ 201
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 132 (51.5 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP ++T + + FS++G+VV+V I+ +K +++ G AF+ F KESA
Sbjct: 9 KSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCS 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RALNNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 138 (53.6 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ G+P +TEG + FSQ+GE+V V ++ +K + + G AF+ + + S LAV+N+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGALVLGRTIKV 109
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK L E M + R++ FS+FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSK-GFGFVSFERHEDARKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
MNGK G+ I V A+ + R ++KF
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVE--RQTELKHKF 280
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+K L S+ + FS FG ++ K+V ++ + G FV F +E A+ A+E M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEEAERAIEKM 158
Query: 137 NGKFFYGRFILV 148
NG F R + V
Sbjct: 159 NGMFLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K+ E + G FV FS E A AV M
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 364 NGRIVATKPLYVALAQ 379
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 141 (54.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 185
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 186 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 217
Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 94
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 95 NGMLLNDRKVFVGRF 109
Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 289
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 290 NGRIVATKPLYVALAQ 305
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I+I GLP ++EG + FSQ+GE V + +V +K + + G AF+ + + S DLAV+N+
Sbjct: 35 IYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNL 94
Query: 137 NGKFFYGRFILV 148
G GR + V
Sbjct: 95 GGATVLGRVLRV 106
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL TE +++ FS++G+V +V +V ++ SK+ G FV F E A A+ M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
NGK GR I ++ + G S N RR Y+
Sbjct: 68 NGKSVDGRQI--RVDQAGKSSN-DRRGGYR 94
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +F+ GL + T ++ AF+QFGEV K+VT+++S G FV ++ E + +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 135 NMNGKFFYGRFILVKIA 151
M+GKF G I + A
Sbjct: 116 GMDGKFLDGWVIFAEYA 132
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 97 NGIKIKGRTIRV 108
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 97 NGIKIKGRTIRV 108
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 204
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 205 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 236
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 113
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 114 NGMLLNDRKVFVGRF 128
Score = 108 (43.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 308
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 309 NGRIVATKPLYVALAQ 324
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP +TE V++ FS +G V+ VKIV ++ S + FV FS + SAD A+E+M
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 137 NGKFFYGRFILVKIAET-GLSKNRG 160
+GK GR + V T G N G
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGRMNPG 92
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 217
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 218 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 249
Score = 108 (43.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 322 NGRIVATKPLYVALAQ 337
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F Q+G + VK++T+ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSR-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK G+ I V A+ + + + +++
Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFE 281
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A++ M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K F+ FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 108 (43.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 129 (50.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 129 (50.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 129 (50.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 127 (49.8 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ +P S+T + K S++G+VV+V IV +K ++ G AFV F +ESA
Sbjct: 9 KSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCS 68
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
++N K +GR + IA + G + R+ Y
Sbjct: 69 RSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNY 101
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEM 251
Query: 137 NGKFFYGRFILVKIAE 152
NGK G+ I V A+
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+K L +S+ + S FG ++ +V ++ + G FV F E+A+ A++ M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKM 158
Query: 137 NGKFFYGRFILV 148
NG GR + V
Sbjct: 159 NGMLLNGRKVFV 170
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + ++K FS++G + ++++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSR-GFGFVSFERHEDAQRAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEMNGKLIYVGRAQKKVERQTELKRKFE 281
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 105 (42.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ + + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL + +K+AF+ FGEV + ++ ++ + + G FV FS ++SA+ A++ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 137 NGKFFYGRFILVKIA 151
+GK GR I V +A
Sbjct: 97 DGKELNGRQIRVNLA 111
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 130 (50.8 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI G+ SM E +++AF+++GEVV +++ ++ + + G FV F+ E+A A++ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 137 NGKFFYGRFILVKIA 151
+G+ +GR + V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFE 281
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK + M + R+++ FS+FG+ + VK++ + + G FV F + E A AV
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSK-GFGFVNFEKHEEAQKAVA 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK GR + V A+ L + + +++
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSELKRKFE 281
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A A++ M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GHGFVHFETQEAATRAIQTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 135 (52.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFE 281
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 134 (52.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVE 151
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 152 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE 183
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 60
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 61 NGMLLNDRKVFVGRF 75
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 255
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 256 NGRIVGSKPLYVALAQ 271
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ P TE + FS G++ V+IV ++ + +P G AF+ F+ + SA AVE M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 137 NGKFFYGRFILVKIA 151
NG F GR + V +A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 132 (51.5 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++M++ ++ F FGEV K++ +K++ Q LG FV + ++E A+ A+
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRG 160
+NG + I V IA +G
Sbjct: 169 NALNGLRLQNKTIKVSIARPSSESIKG 195
Score = 97 (39.2 bits), Expect = 0.00036, P = 0.00036
Identities = 17/67 (25%), Positives = 41/67 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPL-----GSAFVWFSRKESADL 131
+++ GLP++MT+ ++ FS +G+++ +I+ + ++ + G F+ F ++ AD
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257
Query: 132 AVENMNG 138
A++ +NG
Sbjct: 258 AIKELNG 264
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFE 281
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 134 (52.2 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G P ++TEG + FSQ+GEVV + ++ + + + G F+ + + S LAV+N+
Sbjct: 36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95
Query: 137 NG 138
NG
Sbjct: 96 NG 97
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + +++ FSQFG+V+ KI+ ++ S + G FV F +++ A+E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 138 GKFFYGRFILVKIAET 153
GK GR I V A++
Sbjct: 69 GKELDGRVITVNEAQS 84
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 130 (50.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK M + R+K FS++G+ + VK++T+ K G FV F E+A AVE
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSK-GFGFVSFDSHEAAKKAVE 248
Query: 135 NMNGKFFYGRFILVKIAE 152
MNG+ G+ I V A+
Sbjct: 249 EMNGRDINGQLIFVGRAQ 266
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + + FS FG+++ K++++ + G AFV F + +AD A+E M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEM 157
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK G + V G KNR R
Sbjct: 158 NGKLLKGCKVFV-----GRFKNRKDR 178
Score = 102 (41.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++ FS FG + +VK++ E+ Q G + FS E A A+ M
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + + +A+
Sbjct: 353 NGRILGSKPLSIALAQ 368
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 134 (52.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVE 289
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 290 EMNGKEISGKVIFVGRAQKKVERQAELKRKFE 321
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 198
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 199 NGMLLNDRKVFVGRF 213
Score = 109 (43.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 393
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 394 NGRIVGSKPLYVALAQ 409
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 133 (51.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K L + E R++ FSQFG+++ VK++ + S G FV F + E A AV
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVV 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
NMNG+ GR + V A+ + + + R++
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFE 281
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L +S+ + +++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGTKPLYVALAQ 369
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F E+A A+ M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFG--FVHFETHEAAQNAISTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 130 (50.8 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK M + R+K FS++G+ + VK++T+ K G FV F E+A AVE
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSK-GFGFVSFDSHEAAKKAVE 306
Query: 135 NMNGKFFYGRFILVKIAE 152
MNG+ G+ I V A+
Sbjct: 307 EMNGRDINGQLIFVGRAQ 324
Score = 117 (46.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + + FS FG+++ K++++ + G AFV F + +AD A+E M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEM 215
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK G + V G KNR R
Sbjct: 216 NGKLLKGCKVFV-----GRFKNRKDR 236
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++ FS FG + +VK++ E+ Q G + FS E A A+ M
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 410
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + + +A+
Sbjct: 411 NGRILGSKPLSIALAQ 426
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEM 251
Query: 137 NGKFFYGRFILVKIAE 152
NGK G+ I V A+
Sbjct: 252 NGKELNGKQIYVGRAQ 267
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++KAFS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+K L +S+ + S FG ++ +V ++ + G FV F E+A+ A++ M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKM 158
Query: 137 NGKFFYGRFILV 148
NG GR + V
Sbjct: 159 NGMLLNGRKVFV 170
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK + M + R+K+ F ++G + VK++T+ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ + V A+ + + + +++
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFE 281
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A++ M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K F FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL TE + +AFS+ G+VV+ +IV +++S + G FV F+ + A A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
NG+ GR I V A+ S G
Sbjct: 96 NGQQLNGRTIFVDYAKAKQSLGGG 119
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ +++ G+P+SMT ++ F FG+++ +I+++ ++ G FV F +K+ AD+A++
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 135 NMNGKFFYG--RFILVKIAETGLSKN 158
+NG G I VK A S N
Sbjct: 188 TLNGSIPSGCSEQITVKFANNPASNN 213
Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + I LP+ MT+ V+ F+ GE+ K+V +K++ Q LG FV + R+E A AV
Sbjct: 41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRG 160
+ NG + I V A + +G
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSNDQIKG 127
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GL +T+ +++AFS+FG+++ +I+ E+ + + G F+ F+ + + D ++ M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
+G+ F R I V AE L ++ G
Sbjct: 69 HGRDFGDRVISVNRAEPKLGRDDG 92
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEM 251
Query: 137 NGK 139
NGK
Sbjct: 252 NGK 254
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+K L +S+ + S FG ++ +V ++ + G FV F E+A+ A++ M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKM 158
Query: 137 NGKFFYGRFILV 148
NG GR + V
Sbjct: 159 NGMLLNGRKVFV 170
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + ++ AFS++G+V+ KI+T++ + + G FV F+ E+ A+E MN
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 138 GKFFYGRFILVKIAETGLSKNRG 160
G+ GR I V A++ S G
Sbjct: 69 GQDLDGRNITVNEAQSRRSDGGG 91
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ P TE + FSQ G V V+IV ++ + +P G AFV F+ + +A AV+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 137 NGKFFYGRFILVKIAE 152
NG F GR + V +A+
Sbjct: 66 NGVDFNGRALRVNLAQ 81
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ P TE + FSQ G V V+IV ++ + +P G AFV F+ + +A AV+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 137 NGKFFYGRFILVKIAE 152
NG F GR + V +A+
Sbjct: 66 NGVDFNGRALRVNLAQ 81
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 122 (48.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL TE +++AFS++G + +V ++ ++ + + G FV F E A A+ M
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
NGK GR ++++ E G S R
Sbjct: 85 NGKQVDGR--MIRVDEAGKSGGR 105
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 125 (49.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I+I GL +++EG V FSQ+GEV+ + ++ +K + + G AF+ + + S LAV+N
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 137 NGKFFYGRFILVKIAE 152
NG + R I V E
Sbjct: 100 NGISLHKRMIRVDHVE 115
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI G P +TEG + FSQ+GE+ + +V +K + + G F+ + + S LAV+N
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL S+ E +K AFS FGEV +V+I +K S + G FV F+ + A A + M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
+GK GR + + A L + RG
Sbjct: 103 DGKGLLGRPLRISFA---LERVRG 123
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 109 (43.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ LP + GR+++ FS+ G+VV+ ++V ++ + + G FV S + + A+ +
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 137 NGKFFYGRFILVKIAE 152
+G+ GR I V +AE
Sbjct: 306 DGQNLEGRAIRVNVAE 321
Score = 35 (17.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 31 ISKALTXXXXXXXXXXRIYSHPSLQT 56
++ +L I+SHPS+ +
Sbjct: 6 VTSSLKPLAMADSSSSTIFSHPSISS 31
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +++ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSK-GFGFVSYEKHEDANKAVE 178
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 179 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 210
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+A+ A+E M
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEKM 87
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 88 NGMLLNDRKVFVGRF 102
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 283 NGRIVGSKPLYVALAQ 298
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK + M + + F +FG+V+ VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKN 158
MNGK G+ I V A+ + ++
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRH 273
Score = 114 (45.2 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++TE + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSK--GHGFVHFETEEAAERAIEKM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +++ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 281
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+A+ A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK + M + R+K+ F ++G+ + VK++T+ K G FV + + E A+ AVE
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSR-GFGFVSYEKHEDANKAVE 250
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNG G+ + V A+ + + + +++
Sbjct: 251 EMNGTELNGKTVFVGRAQKKMERQAELKRKFE 282
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +++AD A+E M
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQDAADRAIEKM 159
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 160 NGMLLNDRKVFVGRF 174
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E+ + G FV FS E A AV M
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFG--FVCFSSPEEATKAVTEM 354
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 355 NGRIVGSKPLYVALAQ 370
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +++ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 281
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+A+ A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTE---KLSKQPLGSAFVWFSRKESADLAV 133
+++ GLP + TE + AF FGE+ VK+ K ++ G A+V + + A A+
Sbjct: 11 LYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKEAM 70
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRG 160
+NM+ F+GR I V A+ S N G
Sbjct: 71 DNMDQSEFFGRIIKVHAAKPPKSANEG 97
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 20/76 (26%), Positives = 47/76 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ L T+ +++ FS FG++ + +++ + +++P G F+ F ++ A A++++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 137 NGKFFYGRFILVKIAE 152
+GK GR I V++A+
Sbjct: 69 DGKIVDGRLIFVEVAK 84
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 124 (48.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V +A
Sbjct: 79 NTLNGLRLQSKTIKVSVA 96
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ F FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ FS FG + VK++ + S + G FV + E A AV
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
MNGK GR + V A+ + + +G R KF
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIER-QGELKR-KF 280
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG+++ K+V ++ + G FV F +E+A+ A++ M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL T +++ AF+ FG++V +++T++ S + G FV ++ E A+ A M
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 137 NGKFFYGRFILV 148
N KF G I V
Sbjct: 96 NAKFLDGWVIFV 107
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP++MT+ V+ F+Q+G ++ +I+ ++ S G AF+ F ++ A+ A++++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 137 NGKFFYGRF--ILVKIAET-GLSKN 158
NG G I VK A SKN
Sbjct: 212 NGSKPSGASEPITVKFAANPNQSKN 236
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 122 (48.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E++ ++ AF++FG+V+ V+I+ +K G FV E+A+ AV +
Sbjct: 19 IFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFG--FVDMEDLETANKAVAAI 76
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRT 163
NG+ F G+ + V+IA ++++ +RT
Sbjct: 77 NGREFDGKQVNVEIAREKSTESKPKRT 103
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + ++K+ F ++G + ++++T+ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSK-GFGFVSFERHEDAQRAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRG-RRTRYK 166
MNGK G+ + V G ++ +G R+T K
Sbjct: 250 EMNGKEMNGKQVYV-----GRAQKKGERQTELK 277
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETHEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 109 (43.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 113 (44.8 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E ++ FS++G++ +V +V ++ +K+ G FV F E A A+ M
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
NGK GR I ++ + G S N RR Y+
Sbjct: 68 NGKTVDGRQI--RVDQAGKSSN-DRRGGYR 94
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ +P TE + F+ G V V+IV ++ + +P G AFV FS + A AVE +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 137 NGKFFYGRFILVKIA 151
NG F GR + V A
Sbjct: 68 NGVAFNGRNLRVNYA 82
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/85 (35%), Positives = 42/85 (49%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL TE ++ AFS++G + V + + + + G FV F + A A+E M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 137 NGKFFYGRFILVKIAETGLSKNRGR 161
NGK GR I V A G GR
Sbjct: 67 NGKSVDGRTIRVDEAGKGGGGGGGR 91
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQ---FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
IF+ GLP +TEG + FSQ +GE+V + +V +K + + G F+ + + S LAV
Sbjct: 38 IFLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 97
Query: 134 ENMNGKFFYGRFILV 148
+N NG GR I V
Sbjct: 98 DNFNGIKIKGRTIRV 112
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 121 (47.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+ S E +++AFS++GEVV KI+ ++ + + G AFV F+ E A A++ +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 137 NGKFFYGRFILVKIA-ETG 154
+G+ +GR I V A E G
Sbjct: 95 DGQDLHGRRIRVNYATERG 113
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 126 (49.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K L + E ++ FSQFG+++ VK++ + S G FV F + E A AV
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVT 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK GR + V A+ + + + R++
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFE 281
Score = 106 (42.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L +S+ + +++K F+ +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGTKPLYVALAQ 369
Score = 97 (39.2 bits), Expect = 0.00055, P = 0.00055
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V + + G FV F E+A A+ M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFG--FVHFETHEAAQNAIRTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+++ FS FG + VK++ + S + G FV + E A AV
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVS 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK GR I V A+ + + + +++
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFE 281
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L ES+ + FS FG ++ K+V ++ + G FV F E+A+ A++ M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K F +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVSTKPLYVALAQ 369
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 116 (45.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+ ++ K P G FV F ++ESA+ A++ M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERAIDAM 149
Query: 137 NGKFFYGRFILV 148
NG F R I V
Sbjct: 150 NGMFLNYRKIFV 161
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 116 (45.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+ ++ K P G FV F ++ESA+ A++ M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERAIDAM 149
Query: 137 NGKFFYGRFILV 148
NG F R I V
Sbjct: 150 NGMFLNYRKIFV 161
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 116 (45.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+ ++ K P G FV F ++ESA+ A++ M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERAIDAM 149
Query: 137 NGKFFYGRFILV 148
NG F R I V
Sbjct: 150 NGMFLNYRKIFV 161
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 75 TGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
T I++ GLP + TEG + F +FGE+V K+V + +++ G FV F ESA A
Sbjct: 9 TKIYVAGLPWITRTEGLISY-FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
EN N GR + K+A G + + +Y +
Sbjct: 68 ENPNHTID-GRTVNCKLAYLGARVHNYQPNQYGY 100
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +FI GL + ++ AF+ FG+VV K++ ++ + + G FV F+ + +A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 135 NMNGKFFYGRFILVKIA 151
M+GK GR I V A
Sbjct: 95 EMDGKELNGRHIRVNPA 111
>SGD|S000003482 [details] [associations]
symbol:YGR250C "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000003482 EMBL:BK006941 GO:GO:0000166 KO:K00033
RefSeq:NP_011772.3 GeneID:853172 KEGG:sce:YGR256W
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010494 RefSeq:NP_011766.3
GeneID:853165 KEGG:sce:YGR250C EMBL:Z73035 PIR:S64576
ProteinModelPortal:P53316 SMR:P53316 DIP:DIP-5559N IntAct:P53316
MINT:MINT-388955 STRING:P53316 PaxDb:P53316 PeptideAtlas:P53316
EnsemblFungi:YGR250C CYGD:YGR250c eggNOG:NOG306754
HOGENOM:HOG000142071 OMA:NYHVERK OrthoDB:EOG4JWZP9 NextBio:973276
Genevestigator:P53316 GermOnline:YGR250C Uniprot:P53316
Length = 781
Score = 107 (42.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 18/72 (25%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+ +S++ G + FS++G ++ +K++ +K +P G F+ + A L ++ +
Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256
Query: 137 NGKFFYGRFILV 148
NG+ G + +
Sbjct: 257 NGRTVNGSTLFI 268
Score = 43 (20.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 142 YGRFILVKIAETGLSKNRGRR 162
+G I VK+ G SKN+ R+
Sbjct: 563 FGEIISVKVITVGGSKNKYRQ 583
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP SMT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ N
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 NTLNGLRLQSKTIKVSYA 96
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 121 (47.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 NTLNGLRLQSKTIKVSFA 96
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ F FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 121 (47.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K LP + E ++ FSQFG+++ VK++ + S FV F + E A AV
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVV 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK GR + A+ + + + R++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFE 281
Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+ ++ + G FV F E+A A+ M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFG--FVHFETHEAAQQAINTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+++ FS FG + VK++ + + G FV + E A AV
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSR-GFGFVNYGNHEEAQKAVS 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
MNGK GR I V A+ + + +G R KF
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIER-QGELKR-KF 280
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L ES+ + FS FG ++ K+V ++ + G FV F +E+A+ A++ M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 120 (47.3 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT I++ GL + +TE + AF FG++ +++ + S++ G AF+ + + E A A+
Sbjct: 6 RT-IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64
Query: 134 ENMNGKFFYGRFILVKIAE 152
+NMN GR I V +A+
Sbjct: 65 DNMNDSELCGRTIRVNLAK 83
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 118 (46.6 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
FI GL + ++ ++ AF ++G +V+ K+V +K S + G F+ F K++ D A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 138 GKFFYGRFILVKIAE 152
G GR I V A+
Sbjct: 70 GMDLDGRTITVDKAQ 84
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 125 (49.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK L +TE F QFGE+ + +V ++ K P G FV ++ E A AV+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVD 319
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+N K + G+ + V A+ + R RY+
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYE 351
Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L + + + R+K FS FG + KI+T++ K G FV ++ E A+ AV M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSK-GFGFVCYTTPEEANKAVTEM 424
Query: 137 NGKFFYGRFILVKIAE 152
N + G+ + V +A+
Sbjct: 425 NQRMLAGKPLYVALAQ 440
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 75 TG-IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
TG +FIK L ++ + FS FG+++ K+ ++L G FV F ESA+ A+
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAI 225
Query: 134 ENMNGKFFYGRFILV 148
E++NG + + V
Sbjct: 226 EHVNGMLLNDKKVYV 240
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 116 (45.9 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++I GL E +K AFS F V + +++T K++ + G FV F ++SA+ A+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 135 NMNGKFFYGRFILVKIAE 152
MNG+ G I V +A+
Sbjct: 91 AMNGQELNGFNISVNVAK 108
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ L + T+ +++AFS +G VV ++ ++ + + G FV +S A+ AV
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 135 NMNGKFFYGRFILVKIAETG 154
M+GK GR + VK+ G
Sbjct: 63 GMDGKELNGRRVSVKLFGIG 82
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 115 (45.5 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+ ++ K P G FV F ++ESA+ A++ M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERAIDVM 149
Query: 137 NGKFFYGRFILV 148
NG F R I V
Sbjct: 150 NGMFLNYRKIFV 161
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 124 (48.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L + + + FS FG ++ K+VT+ G FV + +ESAD A+ +
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDD-GNSSKGFGFVHYETQESADKAIAKV 158
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
NG G+ + V ++ SK RG+ T KF
Sbjct: 159 NGMMINGQKVFVGPFKS--SKERGQPTEVKF 187
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +F K L E + ++K+ Q+GE+ + I+ + K G F F E+A VE
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSK-GFGFANFESAEAAKNVVE 246
Query: 135 NMNGKFFYGRFILVKIAETGLSK 157
N NGK F+G+ I A+ + +
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIER 269
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK + +S+ ++++ FSQFG + ++ + + G FV ++ + A AV M
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 346 NGRMIGTKPLYVALAQ 361
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 119 (46.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F G + VK++T++ K G FV F R E A AV+
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 118
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 119 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 150
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 222
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 223 NGRIVATKPLYVALAQ 238
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++ + G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 121 (47.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++ + G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLKLQTKTIKVSYA 115
Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSK 157
NG+ G I VK A K
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQK 209
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 119 (46.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I++ LP + GR+++ FS+ G+VV ++V+++ + + G FV S + ++A+ +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 137 NGKFFYGRFILVKIAE 152
+G+ GR I V +AE
Sbjct: 269 DGQNLEGRAIKVNVAE 284
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 118 (46.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ L S+T + FS FG+V +V ++ ++ ++Q G AFV + +E A A
Sbjct: 56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 115
Query: 134 ENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRYK 166
+M+ K GR + V IA + G + ++ YK
Sbjct: 116 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYK 149
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 124 (48.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K L M E ++ FSQFG+ VK++ + + Q G F+ F + E A AV+
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK G+ + V A+ + + R++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFE 281
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L +S+ + R+K+ FS +G + K++TE S G FV FS E A AV M
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGTKPLYVALAQ 369
Score = 95 (38.5 bits), Expect = 0.00091, P = 0.00091
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L S+ + FS FG ++ K+V + + G FV F E+A A+ M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFG--FVHFETHEAAQKAINTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>CGD|CAL0002077 [details] [associations]
symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
Length = 267
Score = 118 (46.6 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I+I LP E +K FSQFG+V+ VK+ K + F+ F E A +A E M
Sbjct: 126 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 185
Query: 137 NGKFFYGRFILVKIAE 152
N +G I ++ E
Sbjct: 186 NNYLLFGHLIKCEVVE 201
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 121 (47.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 19/63 (30%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQFG ++ +I+ ++++ G F+ F R+ A+ A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 137 NGK 139
NG+
Sbjct: 216 NGQ 218
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAI 126
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT IF+ + T+ + + F++FGEV++ IVT+ + QP GSA++ F+RKE+A+ A+
Sbjct: 480 RT-IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 538
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNR 159
+++G F R ++KI + +N+
Sbjct: 539 -SLDGTSFMSR--ILKIVKGSNGQNQ 561
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL T+ +++ FS++G + + +V ++ + + G FV F+ + AD A+ M
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 137 NGKFFYGRFILV-KIAETGLSKNRGRRTR 164
N + F GR I V K +E ++N G + R
Sbjct: 64 NNQEFDGRIIRVDKASERPAARNGGFQGR 92
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GL + + E + AF FG++ VK ++ +++ FV F +E A A++NM
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 137 NGKFFYGRFILVKIA 151
+G YGR + V A
Sbjct: 75 DGAELYGRVLTVNYA 89
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + ++ AF+Q+G+V+ KI+ ++ + + G FV F +++ A+E MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 138 GKFFYGRFILVKIAET-GLSKNRGRR 162
G+ GR I V A++ G G R
Sbjct: 71 GQDLDGRSITVNEAQSRGSGGGGGHR 96
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 126 (49.4 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+ + GLP S+T ++++AFS+ G V + +VT K S + G AFV F+ +E + A+E
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NG GR I VK A S RRT+
Sbjct: 82 NGSTVGGRRITVKQAAHRPSLQE-RRTK 108
Score = 113 (44.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT +FI+ LP +T+ VK+ F+ FGEV + +V K++K+P G+AFV F +++ A+
Sbjct: 561 RT-LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAI 619
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GLP + E ++ + GE+ +V+++ ++ S G AFV F K+ A A+E +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ K F G+ I ++ET KNR
Sbjct: 178 HSKEFKGKTIRCSLSET---KNR 197
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 NTLNGLRLQSKTIKVSYA 96
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 NTLNGLRLQSKTIKVSYA 96
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 119 (46.9 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 87 NTLNGLRLQSKTIKVSYA 104
Score = 113 (44.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 137 NG 138
NG
Sbjct: 176 NG 177
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 90 RVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149
R+K F +FG + VK++T++ K G FV F R E A AV+ MNGK G+ I V
Sbjct: 4 RLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 62
Query: 150 IAETGLSKNRGRRTRYK 166
A+ + + + +++
Sbjct: 63 RAQKKVERQTELKRKFE 79
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 45 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 102
Query: 137 NGKFFYGR 144
NG R
Sbjct: 103 NGMLLNDR 110
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 106 NTLNGLRLQSKTIKVSYA 123
Score = 113 (44.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 137 NG 138
NG
Sbjct: 195 NG 196
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++ F ++G +VQ I+ +KL+ +P G AFV ++++E A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 135 NMNGKFFYG--RFILVKIAE 152
+N G + + V++AE
Sbjct: 271 ALNNVIPEGGSQPLSVRLAE 290
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK--LSKQPLGSAFVWFSRKESADLAV 133
GIF++ L T + +AFSQ+G VV K+ + LSK G F++F E+A A
Sbjct: 74 GIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSK---GFGFIYFETPEAAQKAC 130
Query: 134 ENMNGKFFYGRFILV 148
E N F++GR I V
Sbjct: 131 EEANNTFWHGRRINV 145
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 113 (44.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +++ + FS FG ++ K+ ++ K P G FV F ++ESA+ A++ +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDE--KGPKGYGFVHFQKQESAERAIDAL 149
Query: 137 NGKFFYGRFILV 148
NG F R I V
Sbjct: 150 NGMFLNYRKIFV 161
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 STLNGLRLQSKTIKVSYA 96
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 STLNGLRLQSKTIKVSYA 96
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS+FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 82 NGREFSGRALRVDNAASEKNK 102
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP+SMT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 66 KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 125
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 126 NTLNGLRLQTKTIKVSYA 143
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 137 NGK 139
NG+
Sbjct: 215 NGQ 217
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +++ FS++G++ +V +V ++ +K+ G FV F + A A+ M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
NGK GR I V A RG
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRRG 90
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 114 (45.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 93 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 151
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SK++
Sbjct: 152 HFHDIMGKKVEVKRAEPRDSKSQ 174
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 114 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 172
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SKN+
Sbjct: 173 HFHDIMGKKVEVKRAEPRDSKNQ 195
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 173
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SKN+
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKNQ 196
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 173
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SKN+
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKNQ 196
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +K+ F++FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 174
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SK++
Sbjct: 175 HFHDIMGKKVEVKRAEPRDSKSQ 197
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P SM E V + F++FG ++ + I+ +K + G AF+ FS KE AD A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 137 N--GKFF--YGRFILVKIAETGLSK 157
N G F + + VK ++ + K
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEK 104
Score = 93 (37.8 bits), Expect = 0.00074, P = 0.00074
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI LP + + +K+ F+ +G V+ K+ +K ++Q FV + +SA A++ +
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 137 NGKFFYGRFILV 148
NG+ G+ + V
Sbjct: 349 NGRAIEGKKLKV 360
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT + + LP++MT+ ++ FS GE+ K++ +K++ LG FV + + A+ A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 79 NTLNGLRLQSKTIKVSYA 96
Score = 111 (44.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP +MT+ V+ FS FG ++ +++ ++ + G AF+ F ++ A+ A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 137 NG 138
NG
Sbjct: 168 NG 169
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K LP + E ++ FSQFG+++ VK++ + S FV F + E A AV
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVV 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK GR + A+ + + + R++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFE 281
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L +S+ + +++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGTKPLYVALAQ 369
Score = 97 (39.2 bits), Expect = 0.00056, P = 0.00056
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+ ++ + G FV F E+A A+ M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFG--FVHFETHEAAQQAINTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT +++ G E +TE + AF FG+VV + I + S + G FV F E A +A+
Sbjct: 11 RT-LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAI 69
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRGRR 162
+NMN +G+ I V A + R ++
Sbjct: 70 DNMNESELFGKTIRVNFARPPKATERSQK 98
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT +++ G E +TE + AF FG+VV + I + S + G FV F E A +A+
Sbjct: 11 RT-LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAI 69
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRGRR 162
+NMN +G+ I V A + R ++
Sbjct: 70 DNMNESELFGKTIRVNFARPPKATERSQK 98
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 117 (46.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/80 (27%), Positives = 47/80 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ + ++E ++ FS+ G V+ +K+V ++ + +P G F+ F ++A++A+ N+
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 137 NGKFFYGRFILVKIAETGLS 156
NG GR + V A G++
Sbjct: 80 NGYELSGRILRVDSAAGGMN 99
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVEN- 135
IF+ GLP S+TE K F QFG + V ++ + +++P G F+ F +ES D+ +
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 136 ---MNGK 139
+NGK
Sbjct: 184 FHELNGK 190
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +++AF+++G + +V +V ++ +K+ G FV F + A A+ M
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
NGK GR I V A + RG
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRG 90
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 122 (48.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++I LP + + + FS FGE+V K++ ++++ G FV ++ + A+ AV+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 135 NMNGKFFYGRFILVKIA 151
MNG F GR + V+IA
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I++ GL + EG V FSQ+GE+ + +V K + + G FV + +++S LAV+N+
Sbjct: 35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94
Query: 137 NGKFFYGRFILV 148
NG G+ I V
Sbjct: 95 NGINLLGKTIKV 106
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 120 (47.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ +++K L ES+T+ ++++ F+ FG + K++ + S GS FV FS E A A+
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
MNGK + + V +A+ ++R R + +F
Sbjct: 386 EMNGKMIVTKPLYVALAQR--KEDRKARLQAQF 416
Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++K L ES+++ + K F +FG I+ + K G FV F + A AV+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK-GFGFVNFENSDDAARAVD 282
Query: 135 NMNGKFF 141
+NGK F
Sbjct: 283 ALNGKTF 289
Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ L ++T+ ++ +AF+Q G+VV V++ + +++ LG +V ++ + A A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 135 NMNGKFFYGRFILV--KIAETGLSKN 158
+N GR I V + + L K+
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKS 130
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT I++ LP + E V+ FS++G VVQ+ + K+ +P G AFV F AD A+
Sbjct: 7 RT-IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAI 62
Query: 134 ENMNGKFFYGRFILVKIAETGLSKNRGRRTRY 165
+G F G + V++A G + R Y
Sbjct: 63 YGRDGYDFDGHHLRVELAHGGRRSSHDARGSY 94
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ K F GE+ K+V +K++ Q LG FV + AD A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 97 NTLNGLKLQTKTIKVSYA 114
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ-PLGSAFVWFSRKESADLAVEN 135
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKG 185
Query: 136 MNGKFFYGRF--ILVKIAETGLSK 157
+NG+ G I VK A K
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 119 (46.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 142 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 200
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SK++
Sbjct: 201 HFHDIMGKKVEVKRAEPRDSKSQ 223
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 82 LPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141
+P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+NG+ F
Sbjct: 4 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 63
Query: 142 YGRFILVKIAETGLSK 157
GR + V A + +K
Sbjct: 64 SGRALRVDNAASEKNK 79
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 116 (45.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 111 (44.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GL E + + + AF FG++ ++I + +++ G AFV F E A A++NM
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 137 NGKFFYGRFILVKIAE 152
N +GR I V +A+
Sbjct: 68 NESELFGRTIRVNLAK 83
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 119 (46.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 119 (46.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 117 (46.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K+ FS+ G V+ +K+V ++ S +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG GR + V A T S+
Sbjct: 78 NGYEIGGRTLRVDNACTEKSR 98
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F++ LP + TE ++K FS++G + ++ ++L+K+P G AF+ + E A A M
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEM 139
Query: 137 NGKFFYGRFI 146
+G+ F GR +
Sbjct: 140 DGQVFQGRMM 149
Score = 96 (38.9 bits), Expect = 0.00073, P = 0.00073
Identities = 28/79 (35%), Positives = 40/79 (50%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPL---GSAFVWFSRKESADLAV 133
+FIK L + TEG +K+ FS+ G V I +K L G FV + + ESA A+
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 454
Query: 134 ENMNGKFFYGRFILVKIAE 152
+ G G + VKI+E
Sbjct: 455 RRLQGCIVDGHKLEVKISE 473
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +F+K + M + ++K+ FS++G VK++ + K G FV + E+A AV
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSK-GFGFVRYETHEAAQKAVL 257
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+++GK G+ + V A+ + + R R++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 289
Score = 103 (41.3 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I+IK L E++ + ++K+ FS FG + + K++ E Q G + FS E A AV+ M
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV--GQGKGFGVICFSSFEEATKAVDEM 361
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V + +
Sbjct: 362 NGRIVGSKPLQVTLGQ 377
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 126 NTLNGLRLQTKTIKVSYA 143
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 137 NGK 139
NG+
Sbjct: 215 NGQ 217
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 137 NGK 139
NG+
Sbjct: 216 NGQ 218
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ +K F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 137 NGK 139
NG+
Sbjct: 216 NGQ 218
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ +++K L ESM E R+++ F +G++V K++ + + G FV FS E + A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK-GFGFVCFSNCEESKQAKR 362
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167
+NG G+ I+V++AE ++R +R + F
Sbjct: 363 YLNGFLVDGKPIVVRVAER--KEDRIKRLQQYF 393
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 74 RTG---IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESAD 130
RTG +++K L S+T +++ F FG ++ K+V E + Q G FV F ++SA
Sbjct: 108 RTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAV 165
Query: 131 LAVENMNGKFFYGRFILV 148
A ++G YG+ + V
Sbjct: 166 SARSALHGSMVYGKKLFV 183
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T I++K L + E ++ FS+FG+++ VK++ + S G FV F + E A AV
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVM 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK GR + V A+ + + + R++
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQSELKRRFE 281
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L +S+ + +++K FS +G + K++TE G FV FS E A AV M
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRILGTKPLYVALAQ 369
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V + + G FV F E+A A+ M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFG--FVHFETHEAAQQAITTM 158
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I++ L +T ++ F Q+GE+ + K++ ++ + + G AF+ + +++A AV
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NG GR I V IA +N G R R
Sbjct: 80 NGIDLQGRKIRVNIAR----ENTGDRRR 103
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
I++ L +T ++ F Q+GE+ + K++ ++ + + G AF+ + +++A AV
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NG GR I V IA +N G R R
Sbjct: 80 NGIDLQGRKIRVNIAR----ENTGDRRR 103
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 18/63 (28%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++I GLP++MT+ V++ F ++G ++ +++ ++ S G AF+ F ++ A+ A++++
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 137 NGK 139
NG+
Sbjct: 182 NGQ 184
Score = 112 (44.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++M++ ++ FS GEV K++ +K++ LG FV + A+ A+
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 93 STLNGLRLQSKTIKVSYA 110
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GL E + E + AF FG++ ++I + +++ G AFV F E A A++NM
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 137 NGKFFYGRFILVKIAE 152
N +GR I V +A+
Sbjct: 68 NESELFGRTIRVNLAK 83
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 192 NGQKPSGATEPITVKFANNPSQKS 215
Score = 111 (44.1 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 103 NTLNGLRLQTKTIKVSYA 120
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 117 (46.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ +P TE ++K FS+ G VV ++V ++ + +P G F + +E+A A+ N+
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NG+ F GR + V A + +K
Sbjct: 86 NGREFSGRALRVDNAASEKNK 106
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 117 (46.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAQKPSFQSGGRR 94
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 108 (43.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL E +++ FS++G++ +V +V ++ +++ G FV F + A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRRTR 164
NGK GR I V A S NR R R
Sbjct: 68 NGKSVDGRQIRVDQAGKS-SDNRSRGYR 94
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKS 217
Score = 111 (44.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 105 NTLNGLRLQTKTIKVSYA 122
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKS 217
Score = 111 (44.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 105 NTLNGLRLQTKTIKVSYA 122
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S D AV NM
Sbjct: 58 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NM 116
Query: 137 NGKFFYGRFILVKIAETGLSKNR 159
+ G+ + VK AE SK++
Sbjct: 117 HFHDIMGKKVEVKRAEPRDSKSQ 139
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKS 222
Score = 111 (44.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 110 NTLNGLRLQTKTIKVSYA 127
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ I++K + ++TE ++K FSQ G + K++ ++ K G FV FS E A AV+
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK-GFGFVCFSTPEEAIDAVK 362
Query: 135 NMNGKFFYGRFILVKIAE 152
+G+ F+G+ + V IA+
Sbjct: 363 TFHGQMFHGKPLYVAIAQ 380
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+K LPES+T ++ F +FG +V K+ T + K G FV F ++++A A++ +
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSR-GYGFVQFEQEDAAHAAIQTL 172
Query: 137 NGKFFYGRFILV 148
N + I V
Sbjct: 173 NSTIVADKEIYV 184
Score = 104 (41.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++K L ++E +++ F++FG++V + I ++ ++ G AFV F E A A E
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAE 259
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+NG F + + V A+ + + R ++K
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFK 291
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 187 NGQKPSGATEPITVKFANNPSQKS 210
Score = 111 (44.1 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 187 NGQKPSGATEPITVKFANNPSQKS 210
Score = 111 (44.1 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 115 (45.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKS 217
Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 105 NTLNGLRLQTKTIKVSYA 122
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 115 (45.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKS 217
Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 105 NTLNGLRLQTKTIKVSYA 122
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 210 NGQKPSGATEPITVKFANNPSQKS 233
Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 121 NTLNGLRLQTKTIKVSYA 138
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 198 NGQKPSGATEPITVKFANNPSQKS 221
Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 109 NTLNGLRLQTKTIKVSYA 126
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 116 (45.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ L + ++ +K F++FGEV + K++ + +++ G FV F K++A+ A+ M
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 137 NGKFFYGRFILVK-IAETGLSKNRGRRT 163
NGK+ R + A +NR + T
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLT 314
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKS 222
Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 110 NTLNGLRLQTKTIKVSYA 127
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 137 NGKFFYGRF--ILVKIAETGLSKN 158
NG+ G I VK A K+
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKS 222
Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 110 NTLNGLRLQTKTIKVSYA 127
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL + E ++ FS FG + +V +V ++ +++ G F+ F+ E A +A+ M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 137 NGKFFYGRFILVKIAETGLSKNRG 160
NG+ GR I V A RG
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRG 91
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/66 (31%), Positives = 41/66 (62%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
Query: 134 ENMNGK 139
+N K
Sbjct: 69 RAINNK 74
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 113 (44.8 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
IFI GL + + E ++ FSQFG V + +++T+K + + G FV+F +SAD AV
Sbjct: 103 IFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV 159
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GLP S TE + + FS+FG++ +V +V +K ++ G AFV + ESA +A++ +
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 137 NGKFFYGR 144
+ F GR
Sbjct: 289 DKLPFQGR 296
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 116 (45.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +F+ +P+S E +K F+ + V ++ K + +P G AFV +E AD A+E
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 135 NM-NGKFFYGRF--ILVKIAETGLSK 157
+ N K F G + VK A++ K
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEK 88
Score = 107 (42.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
+ +F+ +P ++ + F Q+G VV K+ +K + G FV + SA+LA+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 135 NMNGKFFYGRFILVKIAET 153
N++G+ G+ + V + +T
Sbjct: 463 NLHGQMMAGKKLKVSLKQT 481
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 116 (45.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 116 (45.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 116 (45.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 116 (45.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI GL E +K F + G + +V ++ ++ SK G AF+ F A A ++M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 137 NGKFFYGRFILVKIAETGLSKNRGRR 162
NGK +G+ I V+ A+ ++ GRR
Sbjct: 69 NGKSLHGKAIKVEQAKKPSFQSGGRR 94
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
RT +F+ L +++ E + FSQ G V+ V+++T+K++K+ G +V FS+KE D A+
Sbjct: 266 RT-VFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAI 324
Query: 134 ENMNGKFFYGRFILV 148
++G G+ ILV
Sbjct: 325 A-LSGSVLDGQQILV 338
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 137 NGK 139
NG+
Sbjct: 199 NGQ 201
Score = 111 (44.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133
+T + + LP++MT+ + F GE+ K+V +K++ Q LG FV + + A+ A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 134 ENMNGKFFYGRFILVKIA 151
+NG + I V A
Sbjct: 110 NTLNGLRLQTKTIKVSYA 127
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 111 (44.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GL E + + + AF FG++ ++I + +++ G AFV F E A A++NM
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 137 NGKFFYGRFILVKIAE 152
N +GR I V +A+
Sbjct: 68 NESELFGRTIRVNLAK 83
WARNING: HSPs involving 529 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.135 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 167 128 0.00091 102 3 11 22 0.49 30
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 779
No. of states in DFA: 524 (56 KB)
Total size of DFA: 107 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.33u 0.18s 11.51t Elapsed: 00:00:01
Total cpu time: 11.35u 0.18s 11.53t Elapsed: 00:00:01
Start: Sat May 11 04:31:50 2013 End: Sat May 11 04:31:51 2013
WARNINGS ISSUED: 2