BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040633
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ LP S+T + + FS++G+VV+V I+ +K S++ G +FV F KESA
Sbjct: 8 SKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNC 67
Query: 133 VENMNGKFFYGRFILVKIAETGLSKNRGRRTRY 165
V +N K +GR I IA K+ GR T +
Sbjct: 68 VRGLNNKQLFGRAIKASIA-----KDNGRATEF 95
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ G+P +TEG + F+Q+GEVV V +V +K + + G AF+ + + S LAV+N+
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 137 NGKFFYGRFILV 148
NG GR + V
Sbjct: 98 NGAKVLGRIVRV 109
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ G+ M E +++ FS+FG V V+I+ E ++K G F+ FS E A A++N+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 137 NGKFFYGRFILVKIA 151
N + FYGR + V+ A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ G+P +TEG + FSQ+GE+V V ++ +K + + G AF+ + + S LAV+N+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGALVLGRTIKV 109
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ GLP +TEG + FSQ+GE+V + +V +K + + G F+ + + S LAV+N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 137 NGKFFYGRFILV 148
NG GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FI G+ SM E +++AF+++GEVV +++ ++ + + G FV F+ E+A A++ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 137 NGKFFYGRFILVKIA 151
+G+ +GR + V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
Query: 133 VENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNC 67
Query: 133 VENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + +++AF+ FG+V+ K++T++ + + G FV FS ++S A+ENMN
Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70
Query: 138 GKFFYGRFILVKIAET 153
GK GR I V A++
Sbjct: 71 GKELDGRNITVNQAQS 86
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++K F ++G +VQ I+ +KL+ +P G AFV F+++E A A+
Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247
Query: 135 NMNGKFFYG--RFILVKIAE 152
+N G + + V++AE
Sbjct: 248 ALNNVIPEGASQPLTVRLAE 267
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T + + LP+ MT+ + F G + +I+ + + G AFV F+ + A A++
Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161
Query: 135 NMNGKFFYGRFILVKIAETG 154
+NG + + V A G
Sbjct: 162 TVNGITVRNKRLKVSYARPG 181
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 42/63 (66%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++K F ++G +VQ I+ +KL+ +P G AFV F+++E A A+
Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230
Query: 135 NMN 137
+N
Sbjct: 231 ALN 233
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%)
Query: 52 PSLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKL 111
P++ T S + ++ + T + + LP+ MT+ + F G + +I+ +
Sbjct: 62 PAISTNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYK 121
Query: 112 SKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154
+ G AFV F+ + A A++++NG + + V A G
Sbjct: 122 TGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPG 164
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 133 VENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+ M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEM 251
Query: 137 NGKFFYGRFILVKIAETGLSK 157
NGK G+ I V A+ + +
Sbjct: 252 NGKELNGKQIYVGRAQKKVER 272
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++KAFS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFG--FVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+K L +S+ + S FG ++ +V ++ + G FV F E+A+ A++ M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKM 158
Query: 137 NGKFFYGRFILV 148
NG GR + V
Sbjct: 159 NGMLLNGRKVFV 170
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 36/72 (50%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ ++I + ++ A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 137 NGKFFYGRFILV 148
N G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ LP S+T + + FS++G+VV+V I+ +K +++ G AF+ F K+SA
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 133 VENMNGKFFYGRFILVKIA-ETGLSKNRGRRTRY 165
+N K +GR I IA + G + RR Y
Sbjct: 68 TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNY 101
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F Q+G + VK++T+ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSR-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
+MNGK G+ I V A+ + + + +++
Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFE 281
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A++ M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K F+ FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 59 SGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS------ 112
+GS S N + T +RT + + LP++MTE ++ FS GE+ VK++ +K
Sbjct: 133 AGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPL 192
Query: 113 -------KQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151
Q LG FV + R + A+ AV +NG + I V A
Sbjct: 193 NPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSK-QPLGSAFVWFSRKE 127
SD +++ GLP++MT+ ++ F+ FG ++ +I+ + Q G F+ F ++E
Sbjct: 242 SDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKRE 301
Query: 128 SADLAVENMNG 138
A A+ +NG
Sbjct: 302 EATRAIIALNG 312
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFI L E + + F FG V VKIV + + Q G FV + + A +A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 464 NGYTMGNRVLQV 475
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+F+ GL + +K+AF+ FGEV + ++ ++ + + G FV FS ++SA+ A++ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 137 NGKFFYGRFILVKIA 151
+GK GR I V +A
Sbjct: 97 DGKELNGRQIRVNLA 111
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 31 ISKALTSNNSSSVSVSRIYSHPSLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGR 90
+S T NN+++ P+ CS S++TE S+T + + LP++MT+
Sbjct: 34 LSNGPTCNNTANC--------PNTINNCSSPVESSNTED---SKTNLIVNYLPQNMTQEE 82
Query: 91 VKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150
+K F GE+ K+V +K++ Q LG FV + + A+ A+ +NG + I V
Sbjct: 83 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 142
Query: 151 A 151
A
Sbjct: 143 A 143
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 137 NGK 139
NG+
Sbjct: 215 NGQ 217
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 354 NGYRLGDRVLQV 365
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 58 CSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLG 117
C G + + E+D S+T + + LP++MT+ K F GE+ K+V +K++ Q LG
Sbjct: 18 CVGILNGTNGEAD-DSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 118 SAFVWFSRKESADLAVENMNG 138
FV + AD A+ +NG
Sbjct: 77 YGFVNYVDPNDADKAINTLNG 97
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 41/63 (65%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ LP++M + +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 137 NGK 139
NG+
Sbjct: 182 NGQ 184
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 267 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 326
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 327 NGYRLGDRVLQV 338
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKES 128
SD+S IF+ G+P + E +++ F +FG V +V ++ + ++P G F+ F ++S
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 129 ADLAVENMNGKFFYGRFILVKIAETGLSKNR 159
D AV NM+ G+ + VK AE SKN+
Sbjct: 167 VDQAV-NMHFHDIMGKKVEVKRAEPRDSKNQ 196
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 65 NSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWF 123
NS +D + +F+ GL S T+ ++ FSQ+GEVV I+ +K + Q G FV F
Sbjct: 2 NSAGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K+ F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 53 SLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS 112
++ CS S +TE S+T + + LP++MT+ +K F GE+ K+V +K++
Sbjct: 20 TINNNCSSPVDSGNTED---SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 113 KQPLGSAFVWFSRKESADLAVENMNG 138
Q LG FV + + A+ A+ +NG
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNG 102
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 338 NGYRLGDRVLQV 349
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 53 SLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS 112
++ CS S +TE S+T + + LP++MT+ +K F GE+ K+V +K++
Sbjct: 20 TINNNCSSPVDSGNTED---SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 113 KQPLGSAFVWFSRKESADLAVENMNG 138
Q LG FV + + A+ A+ +NG
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNG 102
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 338 NGYRLGDRVLQV 349
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S++ +++ +P S+T + K S++G+VV+V IV +K ++ G AFV F +ESA
Sbjct: 8 SKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNC 67
Query: 133 VENMNGKFFYGRFILVKIA 151
++N K +GR + IA
Sbjct: 68 SRSLNNKQLFGRMVKASIA 86
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKES 128
S S T ++IK M + R+K FS++G+ + VK++T+ K G FV F E+
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSK-GFGFVSFDSHEA 242
Query: 129 ADLAVENMNGKFFYGRFILVKIAE 152
A AVE MNG+ G+ I V A+
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQ 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 74 RTGI---FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESAD 130
R+GI FIK L +S+ + + FS FG+++ K++++ + G AFV F + +AD
Sbjct: 94 RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAAD 151
Query: 131 LAVENMNGKFFYGRFILVKIAETGLSKNRGRR 162
A+E MNGK G + V G KNR R
Sbjct: 152 RAIEEMNGKLLKGCKVFV-----GRFKNRKDR 178
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++ FS FG + +VK++ E+ Q G + FS E A A+ M
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 137 NGKFF 141
NG+
Sbjct: 353 NGRIL 357
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G V+ ++I ++++++ LG A+V F + A A++ M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 137 NGKFFYGRFI 146
N G+ I
Sbjct: 72 NFDIIKGKSI 81
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 59 SGSNSSNSTESD-TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLG 117
+G + N + SD S+ + IF+ GL +TE + + FS FGEVV VKI K G
Sbjct: 310 AGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK------G 363
Query: 118 SAFVWFSRKESADLAVENMNG 138
FV F+ ++SA+ A+ N+NG
Sbjct: 364 CGFVQFANRQSAEEAIGNLNG 384
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 77 IFIKGLPESMTEGRVKKAFS-QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVEN 135
IF+ L +++ + + F+ ++ V K+V + + + G FV F + A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 136 MNGKFFYGRFILVKIA 151
MNG F R + V IA
Sbjct: 275 MNGAFCSSRQMRVGIA 290
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E M + R+K F +FG + VK++T++ K G FV F R E A AV+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVD 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IFIK L +S+ + FS FG ++ K+V ++ + G FV F +E+A+ A+E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++K L + + + R++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVATKPLYVALAQ 369
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G ++ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGR 144
N G+
Sbjct: 73 NFDVIKGK 80
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 53 SLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS 112
++ CS S +TE S+T + + LP++MT+ +K F GE+ K+V +K++
Sbjct: 20 TVNNNCSSPVDSGNTED---SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 113 KQPLGSAFVWFSRKESADLAVENMNG 138
Q LG FV + + A+ A+ +NG
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNG 102
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++MT+ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 339 NGYRLGDRVLQV 350
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++ F ++G +VQ I+ +KL+ +P G AFV F+++E A A+
Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255
Query: 135 NMN 137
+N
Sbjct: 256 ALN 258
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADL 131
S+ T + + LP+ MT+ + F G + +I+ + + G AFV F+ + +
Sbjct: 107 SNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQR 166
Query: 132 AVENMNG 138
A++++NG
Sbjct: 167 AIKSLNG 173
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + +++ FSQFGEV+ KI+ ++ + + G FV F ++S A++ MN
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 138 GKFFYGRFILVKIAET 153
GK GR I V A++
Sbjct: 69 GKELDGRTITVNEAQS 84
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + ++ AF+ +GE++ K++T++ + + G FV FS + S A+ENMN
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 138 GKFFYGRFILVKIAET 153
GK GR I V A++
Sbjct: 71 GKELDGRNITVNQAQS 86
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + E ++ AFSQFGE+V KI+ ++ + + G FV F ++S A+E MN
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 138 GKFFYGRFILVKIAE 152
G+ GR I V A+
Sbjct: 71 GQDLDGRSITVNEAQ 85
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ G+ S E +++AFS++GEVV KI+ ++ + + G AFV F+ E A A++ +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 137 NGKFFYGRFILVKIA 151
+G+ +GR I V A
Sbjct: 95 DGQDLHGRRIRVNYA 109
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 62 NSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFV 121
N +N D S+T + + LP++MT+ K F GE+ K+V +K++ Q LG FV
Sbjct: 24 NGTNGAADD--SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 81
Query: 122 WFSRKESADLAVENMNG 138
+ AD A+ +NG
Sbjct: 82 NYVDPNDADKAINTLNG 98
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ-PLGSAFVWFSRKESADLAVEN 135
+++ LP++M + +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 136 MNGK 139
+NG+
Sbjct: 183 LNGQ 186
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 262 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 321
Query: 137 NGKFFYGRFILV 148
NG R + V
Sbjct: 322 NGYRLGDRVLQV 333
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKE 127
+ D IF++ L S E ++K FS+FG++ ++ I + SK+ G AF+ + E
Sbjct: 354 DEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPE 413
Query: 128 SADLAVENMNGKFFYGRFILV 148
+A A+ +M+GK F GR I V
Sbjct: 414 NAVQALNDMDGKVFQGRLIHV 434
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGS----AFVWFSRKESADLA 132
I IK LP T ++K F+ +GE+ V+I K+P G FV F +E A A
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRI-----PKKPNGGHRGFGFVEFLTEEEAKNA 851
Query: 133 VENMNGKFFYGRFILVKIAE 152
+E + FYGR ++++ AE
Sbjct: 852 MEALGNSHFYGRHLVLQYAE 871
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLA 132
S T I +K LP+ +T+ R K+ F +FG V KI+ + + G F+ FS ++SA A
Sbjct: 2 SNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFG--FIGFSTEQSAKNA 59
Query: 133 VENMNGKFFYGRFILVKIA 151
+ ++NG F I+V+ A
Sbjct: 60 L-SLNGTFIDTSKIVVETA 77
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQP-----LGSAFVWFSRKESADL 131
++IK L T + F + V V I T+ K P G F+ FS K+ A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 132 AVENMNGKFFYGRFILVKIA---ETGLSKNRGRR 162
++ +NG G I +K++ ET + + RR
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKRR 773
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADL 131
SSRT +++ LP + E V+ FS++G VVQ+ + K+ +P G AFV F A+
Sbjct: 5 SSRT-VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 132 AVENMNGKFFYGRFILVKIAETG 154
A+ +G F G + V++A G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGG 83
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++ F ++G +VQ I+ +KL+ +P G AFV ++++E A A+
Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272
Query: 135 NMN 137
+N
Sbjct: 273 ALN 275
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 35 LTSNNSSSVSVSRIYSHPSLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKA 94
+TSNNS S L GS+ SS T + + LP+ MT+ +
Sbjct: 94 MTSNNSLSNLCG-------LSLGSGGSDDHMMMHDQRSSNTNLIVNYLPQDMTDRELYAL 146
Query: 95 FSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG 138
F G + +I+ + + G AFV F+ + + A++ +NG
Sbjct: 147 FRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 190
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +++ LP ++T+ ++ F ++G +VQ I+ +KL+ +P G AFV ++++E A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 135 NMN 137
+N
Sbjct: 271 ALN 273
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 50 SHPSLQTKCS---GSNSSNSTESDT-SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVK 105
S+ SL C GS S+ +D +S T + + LP+ MT+ + F G + +
Sbjct: 96 SNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCR 155
Query: 106 IVTEKLSKQPLGSAFVWFSRKESADLAVENMNG 138
I+ + + G AFV F+ + + A++ +NG
Sbjct: 156 IMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + +++ FSQFG+V+ KI+ ++ S + G FV F +++ A+E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 138 GKFFYGRFILVKIAE 152
GK GR I V A+
Sbjct: 69 GKELDGRVITVNEAQ 83
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 78 FIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137
F+ GL + + ++ AFS++G+V+ KI+T++ + + G FV F+ E+ A+E MN
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 138 GKFFYGRFILVKIAET 153
G+ GR I V A++
Sbjct: 69 GQDLDGRNITVNEAQS 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T +FI GL + ++ AF+ FG+VV K++ ++ + + G FV F+ + +A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 135 NMNGKFFYGRFILVKIAE 152
M+GK GR I V A
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESA 129
D RT + + LP++MT+ ++ FS GEV K++ +K++ LG FV + + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 130 DLAVENMNGKFFYGRFILVKIA 151
+ A+ +NG + I V +A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSVA 96
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKES 128
S++ ++I GLP +MT+ V+ F FG ++ +++ ++ + G AF+ F ++
Sbjct: 100 SESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSE 159
Query: 129 ADLAVENMNG 138
A+ A+ + NG
Sbjct: 160 AEEAIASFNG 169
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKES 128
S SS IFI L + EG + + F FG V VK++ + + + G FV + E
Sbjct: 238 SSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 129 ADLAVENMNG 138
A +A+ ++NG
Sbjct: 298 AAMAIASLNG 307
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADL 131
S+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 132 AVENMNG 138
A+ +NG
Sbjct: 96 AINTLNG 102
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 42/63 (66%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++ + G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 137 NG 138
NG
Sbjct: 346 NG 347
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADL 131
S+T + + LP++MT+ K F G++ K+V +K++ Q LG FV +S AD
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 132 AVENMNG 138
A+ +NG
Sbjct: 96 AINTLNG 102
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 43/63 (68%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ GLP++M++ +++ FSQ+G ++ +I+ ++++ G F+ F ++ A+ A++ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 137 NGK 139
NG+
Sbjct: 187 NGQ 189
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
IF+ L E + + F FG V VK++ + + + G FV + + A +A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 137 NG 138
NG
Sbjct: 346 NG 347
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134
T ++IK E + + +K+ FSQFG+ + VK++ + K G FV + + E A+ AVE
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVE 249
Query: 135 NMNGKFFYGRFILVKIAETGLSKNRGRRTRYK 166
MNGK G+ I V A+ + + + +++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+FIK L +S+ + FS FG ++ K+V ++ + G AFV F +E+AD A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEKM 158
Query: 137 NG------KFFYGRF 145
NG K F GRF
Sbjct: 159 NGMLLNDRKVFVGRF 173
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
++IK L +++ + +++K FS FG + K++ E + G FV FS E A AV M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTEM 353
Query: 137 NGKFFYGRFILVKIAE 152
NG+ + + V +A+
Sbjct: 354 NGRIVGSKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 0.060, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136
+++ L +TE + + FS G V+ +++ + ++++ LG A+V F + A+ A++ M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 137 NGKFFYGRFILV 148
N G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,666,551
Number of Sequences: 539616
Number of extensions: 1911764
Number of successful extensions: 9234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 7775
Number of HSP's gapped (non-prelim): 1570
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)