Query 040633
Match_columns 167
No_of_seqs 152 out of 2092
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 2.9E-20 6.3E-25 129.3 13.5 86 71-156 31-116 (144)
2 KOG0122 Translation initiation 99.8 9.4E-20 2E-24 132.7 12.9 110 43-154 160-269 (270)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.4E-18 3E-23 137.1 14.5 84 72-155 267-350 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.3E-18 7.1E-23 135.0 12.1 84 73-156 2-85 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 4.9E-18 1.1E-22 133.4 11.9 87 68-154 101-187 (346)
6 PF00076 RRM_1: RNA recognitio 99.8 1.1E-17 2.3E-22 102.1 9.9 70 77-147 1-70 (70)
7 KOG0125 Ataxin 2-binding prote 99.7 9.3E-18 2E-22 126.8 10.1 98 66-165 88-185 (376)
8 KOG0149 Predicted RNA-binding 99.7 6.6E-18 1.4E-22 122.5 7.1 80 72-152 10-89 (247)
9 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.5E-21 124.9 12.1 84 72-155 191-276 (346)
10 KOG0113 U1 small nuclear ribon 99.7 2.4E-16 5.3E-21 117.9 11.6 98 61-158 88-185 (335)
11 PF14259 RRM_6: RNA recognitio 99.7 4.7E-16 1E-20 95.2 9.8 70 77-147 1-70 (70)
12 TIGR01645 half-pint poly-U bin 99.7 3.4E-16 7.3E-21 129.7 11.9 86 72-157 202-287 (612)
13 KOG0107 Alternative splicing f 99.7 3.2E-16 6.9E-21 109.2 9.0 80 72-156 8-87 (195)
14 TIGR01645 half-pint poly-U bin 99.7 4.6E-16 1E-20 128.9 10.9 82 72-153 105-186 (612)
15 KOG0121 Nuclear cap-binding pr 99.7 2.8E-16 6E-21 104.3 7.6 85 70-154 32-116 (153)
16 KOG0148 Apoptosis-promoting RN 99.7 2.9E-16 6.3E-21 116.1 8.4 89 73-161 61-149 (321)
17 KOG0111 Cyclophilin-type pepti 99.7 1.4E-16 2.9E-21 114.9 5.3 93 71-163 7-99 (298)
18 KOG0117 Heterogeneous nuclear 99.6 9.4E-16 2E-20 120.1 9.9 84 69-152 78-162 (506)
19 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-15 3.7E-20 126.4 11.8 79 76-154 2-80 (562)
20 PLN03120 nucleic acid binding 99.6 2.2E-15 4.9E-20 112.4 10.8 75 74-152 4-78 (260)
21 PLN03213 repressor of silencin 99.6 2E-15 4.3E-20 119.9 10.0 81 70-154 6-88 (759)
22 KOG4207 Predicted splicing fac 99.6 7.5E-16 1.6E-20 110.0 6.8 85 69-153 8-92 (256)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 5.7E-15 1.2E-19 121.9 13.0 82 72-153 293-374 (509)
24 KOG0146 RNA-binding protein ET 99.6 5.5E-16 1.2E-20 114.7 5.7 91 68-158 279-369 (371)
25 KOG0145 RNA-binding protein EL 99.6 6.5E-15 1.4E-19 108.7 11.2 88 70-157 37-124 (360)
26 TIGR01622 SF-CC1 splicing fact 99.6 4.4E-15 9.5E-20 121.1 11.5 80 73-152 185-264 (457)
27 KOG0126 Predicted RNA-binding 99.6 7.7E-17 1.7E-21 112.9 1.0 88 65-152 26-113 (219)
28 TIGR01628 PABP-1234 polyadenyl 99.6 2.9E-15 6.3E-20 125.1 10.6 85 71-156 282-366 (562)
29 KOG0108 mRNA cleavage and poly 99.6 1.1E-15 2.4E-20 122.2 7.6 84 75-158 19-102 (435)
30 KOG0148 Apoptosis-promoting RN 99.6 5.4E-15 1.2E-19 109.5 10.0 81 70-156 160-240 (321)
31 smart00362 RRM_2 RNA recogniti 99.6 9.3E-15 2E-19 88.5 9.6 72 76-149 1-72 (72)
32 TIGR01648 hnRNP-R-Q heterogene 99.6 7.2E-15 1.6E-19 121.6 11.6 80 71-151 55-135 (578)
33 TIGR01622 SF-CC1 splicing fact 99.6 9.3E-15 2E-19 119.2 11.6 83 70-153 85-167 (457)
34 KOG0130 RNA-binding protein RB 99.6 4.5E-15 9.8E-20 99.4 7.3 86 68-153 66-151 (170)
35 smart00360 RRM RNA recognition 99.6 1.7E-14 3.6E-19 87.1 8.8 71 79-149 1-71 (71)
36 KOG0131 Splicing factor 3b, su 99.6 3E-15 6.6E-20 104.9 6.1 83 70-152 5-87 (203)
37 KOG0144 RNA-binding protein CU 99.6 1.5E-14 3.2E-19 113.1 9.8 91 67-157 27-120 (510)
38 COG0724 RNA-binding proteins ( 99.6 2.6E-14 5.5E-19 107.6 10.4 80 74-153 115-194 (306)
39 PLN03121 nucleic acid binding 99.6 3.6E-14 7.8E-19 104.5 10.7 77 72-152 3-79 (243)
40 TIGR01648 hnRNP-R-Q heterogene 99.6 3.2E-14 7E-19 117.7 11.7 78 72-157 231-310 (578)
41 KOG0105 Alternative splicing f 99.6 2.1E-14 4.6E-19 101.1 7.9 80 72-154 4-83 (241)
42 KOG0144 RNA-binding protein CU 99.5 3.9E-15 8.4E-20 116.3 4.6 90 72-162 122-214 (510)
43 KOG0131 Splicing factor 3b, su 99.5 7.8E-15 1.7E-19 102.9 5.2 109 50-158 72-181 (203)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.4E-13 3.1E-18 113.0 12.4 79 71-154 272-351 (481)
45 cd00590 RRM RRM (RNA recogniti 99.5 2.4E-13 5.3E-18 82.6 10.3 74 76-150 1-74 (74)
46 KOG0114 Predicted RNA-binding 99.5 1.3E-13 2.7E-18 88.5 8.6 81 71-154 15-95 (124)
47 KOG0145 RNA-binding protein EL 99.5 2.4E-13 5.3E-18 100.5 10.6 85 70-154 274-358 (360)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.2E-13 4.8E-18 111.9 11.2 75 74-154 2-78 (481)
49 KOG0109 RNA-binding protein LA 99.5 9.5E-14 2.1E-18 103.9 6.2 72 75-154 3-74 (346)
50 PF13893 RRM_5: RNA recognitio 99.5 6E-13 1.3E-17 77.9 8.3 56 91-151 1-56 (56)
51 smart00361 RRM_1 RNA recogniti 99.5 5.9E-13 1.3E-17 81.5 8.3 62 88-149 2-70 (70)
52 KOG0117 Heterogeneous nuclear 99.4 2.9E-13 6.3E-18 106.3 7.8 79 73-159 258-336 (506)
53 KOG0147 Transcriptional coacti 99.4 4.7E-13 1E-17 107.4 7.2 78 77-154 281-358 (549)
54 KOG4208 Nucleolar RNA-binding 99.4 1.3E-12 2.9E-17 93.4 8.7 87 68-154 43-130 (214)
55 KOG0124 Polypyrimidine tract-b 99.4 1.8E-13 3.9E-18 105.4 4.6 78 74-151 113-190 (544)
56 KOG0127 Nucleolar protein fibr 99.4 3E-12 6.6E-17 102.9 8.6 82 74-156 117-198 (678)
57 KOG0127 Nucleolar protein fibr 99.4 2.6E-12 5.6E-17 103.3 7.9 86 73-158 4-89 (678)
58 KOG4212 RNA-binding protein hn 99.3 5.1E-12 1.1E-16 99.4 8.4 79 73-152 43-122 (608)
59 KOG4206 Spliceosomal protein s 99.3 1.3E-11 2.8E-16 89.6 8.6 81 74-157 9-93 (221)
60 KOG0415 Predicted peptidyl pro 99.3 6E-12 1.3E-16 96.6 7.2 89 67-155 232-320 (479)
61 KOG0123 Polyadenylate-binding 99.3 1.9E-11 4.2E-16 96.9 9.7 79 77-158 79-157 (369)
62 KOG0132 RNA polymerase II C-te 99.3 6.1E-11 1.3E-15 98.8 12.3 80 73-158 420-499 (894)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.2 4.7E-11 1E-15 98.7 9.1 76 69-151 170-257 (509)
64 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.9E-10 4.2E-15 93.3 12.0 87 70-156 401-487 (940)
65 KOG0153 Predicted RNA-binding 99.2 1.3E-10 2.9E-15 89.0 9.1 81 67-153 221-302 (377)
66 KOG0109 RNA-binding protein LA 99.2 4E-11 8.6E-16 90.0 5.6 78 71-156 75-152 (346)
67 KOG0116 RasGAP SH3 binding pro 99.1 2.4E-10 5.2E-15 91.3 9.2 90 69-159 283-372 (419)
68 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.4E-15 86.8 6.5 84 72-156 17-103 (371)
69 KOG1457 RNA binding protein (c 99.1 1.5E-09 3.3E-14 78.9 11.7 89 70-158 30-122 (284)
70 KOG4205 RNA-binding protein mu 99.1 9.4E-11 2E-15 90.5 5.8 87 73-160 5-91 (311)
71 KOG0226 RNA-binding proteins [ 99.1 6.9E-11 1.5E-15 87.2 4.5 93 63-155 179-271 (290)
72 KOG0123 Polyadenylate-binding 99.1 4.4E-10 9.6E-15 89.2 8.6 74 75-154 2-75 (369)
73 KOG0110 RNA-binding protein (R 99.1 1.7E-09 3.6E-14 89.6 11.9 81 74-154 515-598 (725)
74 KOG4212 RNA-binding protein hn 99.1 3.4E-10 7.5E-15 89.2 7.0 77 70-151 532-608 (608)
75 KOG0124 Polypyrimidine tract-b 99.1 4.9E-10 1.1E-14 86.7 6.9 83 70-152 206-288 (544)
76 KOG4205 RNA-binding protein mu 99.0 4.9E-10 1.1E-14 86.5 6.5 84 73-157 96-179 (311)
77 KOG0110 RNA-binding protein (R 99.0 2.1E-10 4.6E-15 94.8 4.5 81 74-154 613-693 (725)
78 KOG0533 RRM motif-containing p 99.0 2.5E-09 5.3E-14 79.8 9.1 84 70-154 79-162 (243)
79 KOG1548 Transcription elongati 99.0 2.1E-09 4.5E-14 82.5 8.5 81 71-152 131-219 (382)
80 KOG4209 Splicing factor RNPS1, 98.9 3.5E-09 7.6E-14 78.9 7.2 84 69-153 96-179 (231)
81 KOG0106 Alternative splicing f 98.9 1.8E-09 3.9E-14 79.0 5.4 71 75-153 2-72 (216)
82 PF04059 RRM_2: RNA recognitio 98.8 5.9E-08 1.3E-12 62.7 9.7 80 75-154 2-87 (97)
83 KOG4660 Protein Mei2, essentia 98.8 6.1E-09 1.3E-13 84.3 4.3 74 69-147 70-143 (549)
84 KOG4454 RNA binding protein (R 98.8 4.4E-09 9.5E-14 76.3 2.7 81 72-154 7-87 (267)
85 KOG0151 Predicted splicing reg 98.7 6.3E-08 1.4E-12 80.5 7.2 86 69-154 169-257 (877)
86 KOG0120 Splicing factor U2AF, 98.6 4.5E-08 9.8E-13 79.6 4.7 86 68-153 283-368 (500)
87 KOG1190 Polypyrimidine tract-b 98.6 3.3E-07 7.1E-12 72.1 8.4 76 74-154 297-373 (492)
88 KOG1995 Conserved Zn-finger pr 98.5 3E-07 6.4E-12 71.2 5.4 89 68-156 60-156 (351)
89 KOG0147 Transcriptional coacti 98.4 1.3E-07 2.7E-12 76.7 1.9 85 67-152 172-256 (549)
90 KOG4211 Splicing factor hnRNP- 98.4 2.8E-06 6E-11 68.3 9.3 82 70-155 6-87 (510)
91 KOG4206 Spliceosomal protein s 98.2 8E-06 1.7E-10 59.7 8.1 78 70-152 142-220 (221)
92 KOG1456 Heterogeneous nuclear 98.2 2.7E-05 6E-10 60.9 11.0 81 68-153 281-362 (494)
93 PF08777 RRM_3: RNA binding mo 98.2 4.1E-06 8.8E-11 55.1 5.5 71 74-150 1-76 (105)
94 KOG4210 Nuclear localization s 98.2 1.6E-06 3.4E-11 66.8 3.3 85 72-157 182-267 (285)
95 PF11608 Limkain-b1: Limkain b 98.1 4.1E-06 8.9E-11 52.1 4.3 69 75-153 3-76 (90)
96 KOG4211 Splicing factor hnRNP- 98.1 1.7E-05 3.7E-10 63.9 8.8 78 72-151 101-179 (510)
97 KOG1457 RNA binding protein (c 98.1 3.3E-06 7.1E-11 61.8 4.3 69 70-142 206-274 (284)
98 COG5175 MOT2 Transcriptional r 98.1 1E-05 2.2E-10 62.5 6.5 81 72-152 112-201 (480)
99 KOG0106 Alternative splicing f 98.0 5.1E-06 1.1E-10 61.0 3.8 74 70-151 95-168 (216)
100 KOG4849 mRNA cleavage factor I 98.0 1E-05 2.2E-10 62.8 5.2 76 70-145 76-153 (498)
101 KOG4307 RNA binding protein RB 98.0 4.2E-05 9.2E-10 64.1 8.2 78 73-150 866-943 (944)
102 KOG1456 Heterogeneous nuclear 97.9 0.00011 2.4E-09 57.7 8.4 72 80-156 128-201 (494)
103 KOG2202 U2 snRNP splicing fact 97.9 6.7E-06 1.5E-10 61.2 1.6 75 89-165 83-158 (260)
104 KOG0129 Predicted RNA-binding 97.8 9E-05 2E-09 60.2 7.9 67 69-135 365-432 (520)
105 KOG1548 Transcription elongati 97.8 0.00012 2.7E-09 56.7 8.2 85 68-156 259-354 (382)
106 KOG3152 TBP-binding protein, a 97.8 1.6E-05 3.4E-10 59.3 3.0 73 73-145 73-157 (278)
107 KOG0129 Predicted RNA-binding 97.8 0.00013 2.9E-09 59.2 8.2 94 68-165 253-352 (520)
108 KOG2314 Translation initiation 97.7 0.00028 6.1E-09 58.1 9.1 78 72-150 56-140 (698)
109 KOG1855 Predicted RNA-binding 97.6 9.1E-05 2E-09 58.9 4.9 81 60-140 217-310 (484)
110 KOG0120 Splicing factor U2AF, 97.6 0.00026 5.7E-09 58.1 7.6 63 90-152 425-490 (500)
111 KOG1365 RNA-binding protein Fu 97.6 0.0002 4.3E-09 56.5 6.2 81 70-151 276-359 (508)
112 KOG1190 Polypyrimidine tract-b 97.6 0.00028 6E-09 56.0 7.0 79 71-153 411-490 (492)
113 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00024 5.3E-09 40.7 5.0 52 75-133 2-53 (53)
114 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00057 1.2E-08 44.5 7.1 78 73-152 5-90 (100)
115 PF08952 DUF1866: Domain of un 97.5 0.001 2.2E-08 46.0 8.1 55 90-153 52-106 (146)
116 KOG0105 Alternative splicing f 97.4 0.00079 1.7E-08 48.2 7.0 67 69-142 110-176 (241)
117 KOG0112 Large RNA-binding prot 97.3 0.00042 9.2E-09 59.7 5.0 79 70-154 451-531 (975)
118 KOG0128 RNA-binding protein SA 97.1 0.0003 6.5E-09 60.3 2.2 81 73-154 735-815 (881)
119 KOG2416 Acinus (induces apopto 97.0 0.00076 1.7E-08 55.9 4.0 77 70-152 440-520 (718)
120 KOG1996 mRNA splicing factor [ 97.0 0.0038 8.1E-08 47.8 6.9 63 89-151 301-364 (378)
121 KOG2068 MOT2 transcription fac 96.9 0.00048 1E-08 53.4 1.4 83 72-154 75-163 (327)
122 PF10309 DUF2414: Protein of u 96.9 0.0098 2.1E-07 35.1 6.6 56 73-136 4-62 (62)
123 KOG2193 IGF-II mRNA-binding pr 96.8 0.0011 2.4E-08 53.0 3.0 77 75-157 2-79 (584)
124 KOG0128 RNA-binding protein SA 96.8 5.7E-05 1.2E-09 64.5 -4.4 71 72-142 665-735 (881)
125 PF08675 RNA_bind: RNA binding 96.8 0.0076 1.6E-07 37.6 6.0 54 75-137 10-63 (87)
126 KOG1365 RNA-binding protein Fu 96.7 0.01 2.2E-07 47.1 7.4 67 74-142 161-231 (508)
127 KOG4307 RNA binding protein RB 96.1 0.011 2.3E-07 50.3 4.9 82 69-151 429-511 (944)
128 KOG0115 RNA-binding protein p5 96.1 0.0091 2E-07 44.8 4.0 62 75-137 32-93 (275)
129 PF04847 Calcipressin: Calcipr 95.9 0.04 8.8E-07 39.9 6.5 63 87-155 8-72 (184)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.035 7.5E-07 39.9 5.8 82 71-152 4-96 (176)
131 KOG0112 Large RNA-binding prot 95.6 0.003 6.6E-08 54.7 0.0 84 68-152 366-449 (975)
132 PF15023 DUF4523: Protein of u 95.6 0.16 3.6E-06 35.0 8.3 77 70-154 82-162 (166)
133 KOG4660 Protein Mei2, essentia 95.6 0.031 6.6E-07 46.3 5.4 82 72-153 359-472 (549)
134 PF07576 BRAP2: BRCA1-associat 95.5 0.36 7.9E-06 31.9 9.6 69 73-143 12-81 (110)
135 KOG4676 Splicing factor, argin 95.3 0.045 9.7E-07 43.6 5.3 75 75-150 8-85 (479)
136 KOG4285 Mitotic phosphoprotein 95.3 0.54 1.2E-05 36.4 10.9 69 69-145 190-260 (350)
137 PF03880 DbpA: DbpA RNA bindin 95.2 0.14 3.1E-06 31.2 6.5 62 81-151 8-74 (74)
138 PF11767 SET_assoc: Histone ly 95.0 0.24 5.2E-06 29.6 6.7 55 85-148 11-65 (66)
139 KOG2591 c-Mpl binding protein, 94.8 0.077 1.7E-06 44.2 5.5 74 70-150 171-248 (684)
140 KOG2253 U1 snRNP complex, subu 94.8 0.056 1.2E-06 45.7 4.8 74 69-151 35-108 (668)
141 KOG4574 RNA-binding protein (c 94.6 0.12 2.7E-06 45.0 6.6 76 74-155 298-375 (1007)
142 KOG4210 Nuclear localization s 93.2 0.062 1.4E-06 41.6 2.1 80 72-151 86-165 (285)
143 KOG2135 Proteins containing th 93.0 0.072 1.6E-06 43.5 2.3 74 74-154 372-446 (526)
144 KOG0804 Cytoplasmic Zn-finger 91.7 1 2.3E-05 36.8 7.3 70 72-143 72-142 (493)
145 KOG4483 Uncharacterized conser 86.9 2.8 6.1E-05 33.9 6.3 59 70-135 387-446 (528)
146 KOG4676 Splicing factor, argin 85.7 0.093 2E-06 41.9 -2.3 64 74-142 151-214 (479)
147 KOG4410 5-formyltetrahydrofola 84.9 9 0.0002 29.7 8.0 60 72-137 328-395 (396)
148 KOG2318 Uncharacterized conser 74.8 19 0.0004 30.8 7.3 81 71-151 171-305 (650)
149 COG0724 RNA-binding proteins ( 66.2 10 0.00023 27.7 4.0 67 68-134 219-285 (306)
150 KOG4454 RNA binding protein (R 65.4 1.4 3E-05 32.8 -0.9 72 69-141 75-150 (267)
151 PF07530 PRE_C2HC: Associated 64.5 21 0.00045 21.4 4.3 62 89-153 2-64 (68)
152 smart00596 PRE_C2HC PRE_C2HC d 61.1 21 0.00045 21.5 3.8 61 89-152 2-63 (69)
153 PF03468 XS: XS domain; Inter 59.7 13 0.00028 24.8 3.1 36 87-125 30-65 (116)
154 KOG4019 Calcineurin-mediated s 55.0 13 0.00027 27.0 2.5 74 75-154 11-90 (193)
155 PF15513 DUF4651: Domain of un 53.6 35 0.00076 20.1 3.8 18 89-106 9-26 (62)
156 KOG2193 IGF-II mRNA-binding pr 51.1 0.54 1.2E-05 38.2 -5.4 76 72-151 78-154 (584)
157 PF07292 NID: Nmi/IFP 35 domai 48.2 11 0.00024 23.9 1.2 26 71-96 49-74 (88)
158 KOG4213 RNA-binding protein La 47.0 58 0.0012 23.7 4.7 56 74-135 111-169 (205)
159 PRK11901 hypothetical protein; 45.8 54 0.0012 26.0 4.8 64 71-138 242-306 (327)
160 PF03439 Spt5-NGN: Early trans 45.7 48 0.001 20.5 3.9 28 114-141 42-69 (84)
161 PRK11634 ATP-dependent RNA hel 43.0 1.3E+02 0.0027 26.3 7.2 69 75-152 487-561 (629)
162 PF10567 Nab6_mRNP_bdg: RNA-re 42.5 53 0.0012 25.7 4.3 81 72-152 13-106 (309)
163 COG0150 PurM Phosphoribosylami 41.6 6.4 0.00014 31.3 -0.7 48 88-139 275-322 (345)
164 KOG2295 C2H2 Zn-finger protein 41.0 3.4 7.4E-05 34.8 -2.4 75 70-144 227-301 (648)
165 PF09707 Cas_Cas2CT1978: CRISP 40.6 73 0.0016 20.0 4.1 47 75-124 26-72 (86)
166 KOG0156 Cytochrome P450 CYP2 s 39.3 67 0.0015 27.0 4.9 59 78-146 36-97 (489)
167 PRK10905 cell division protein 39.3 83 0.0018 25.0 5.0 63 72-138 245-308 (328)
168 PRK14548 50S ribosomal protein 36.5 1.1E+02 0.0024 19.2 5.8 56 77-135 23-80 (84)
169 KOG4365 Uncharacterized conser 35.8 5 0.00011 33.0 -2.1 77 75-152 4-80 (572)
170 PRK11558 putative ssRNA endonu 35.7 81 0.0018 20.4 3.8 49 74-125 27-75 (97)
171 PF11456 DUF3019: Protein of u 35.0 61 0.0013 21.0 3.2 29 137-167 74-102 (102)
172 KOG2187 tRNA uracil-5-methyltr 33.1 26 0.00056 29.6 1.5 43 115-157 62-104 (534)
173 PF15407 Spo7_2_N: Sporulation 32.5 21 0.00045 21.4 0.6 21 72-92 25-45 (67)
174 COG5193 LHP1 La protein, small 31.8 23 0.00049 28.9 0.9 63 72-134 172-244 (438)
175 COG0030 KsgA Dimethyladenosine 29.8 72 0.0016 24.5 3.3 28 74-101 95-122 (259)
176 PRK11230 glycolate oxidase sub 29.0 3E+02 0.0065 23.2 7.1 63 74-137 189-255 (499)
177 KOG1295 Nonsense-mediated deca 28.1 1.1E+02 0.0024 24.8 4.2 70 72-141 5-77 (376)
178 KOG2891 Surface glycoprotein [ 28.1 70 0.0015 24.9 2.9 38 70-107 145-194 (445)
179 KOG0862 Synaptobrevin/VAMP-lik 27.1 65 0.0014 24.0 2.5 12 114-125 107-118 (216)
180 PF11411 DNA_ligase_IV: DNA li 26.3 57 0.0012 16.9 1.5 16 84-99 19-34 (36)
181 COG4010 Uncharacterized protei 26.3 2.3E+02 0.005 19.8 4.9 47 81-137 118-164 (170)
182 PF08442 ATP-grasp_2: ATP-gras 25.4 1.9E+02 0.0041 21.2 4.8 53 87-142 26-81 (202)
183 PF11823 DUF3343: Protein of u 25.3 1.1E+02 0.0025 18.1 3.1 26 117-142 2-27 (73)
184 cd00027 BRCT Breast Cancer Sup 23.9 1.3E+02 0.0028 16.4 3.1 27 75-101 2-28 (72)
185 PF00398 RrnaAD: Ribosomal RNA 22.3 89 0.0019 23.7 2.7 25 72-96 95-119 (262)
186 KOG4008 rRNA processing protei 22.3 83 0.0018 23.9 2.3 36 69-104 35-70 (261)
187 KOG0226 RNA-binding proteins [ 21.6 1.1E+02 0.0024 23.6 2.9 75 72-147 94-171 (290)
188 PHA01632 hypothetical protein 21.5 1E+02 0.0022 17.7 2.1 21 77-97 19-39 (64)
189 PF15063 TC1: Thyroid cancer p 21.4 62 0.0013 19.9 1.3 28 75-102 26-53 (79)
190 PRK01178 rps24e 30S ribosomal 21.1 2.5E+02 0.0053 18.2 5.2 46 85-131 30-80 (99)
191 TIGR01873 cas_CT1978 CRISPR-as 20.3 2.3E+02 0.0051 17.8 3.8 49 74-125 25-74 (87)
192 PTZ00071 40S ribosomal protein 20.0 3E+02 0.0066 18.8 5.4 46 85-131 35-86 (132)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.9e-20 Score=129.32 Aligned_cols=86 Identities=31% Similarity=0.506 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.||+.||+..|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 040633 151 AETGLS 156 (167)
Q Consensus 151 a~~~~~ 156 (167)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976543
No 2
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=9.4e-20 Score=132.67 Aligned_cols=110 Identities=21% Similarity=0.355 Sum_probs=96.5
Q ss_pred cccccccCCCccccccCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEE
Q 040633 43 VSVSRIYSHPSLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVW 122 (167)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~ 122 (167)
......|.+|.++....+... +...+..+.++|-|.||+.++++.+|+++|.+||.|.++.+..++.||.++|||||.
T Consensus 160 ~~~~g~yvpP~mR~ga~~~~g--~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVt 237 (270)
T KOG0122|consen 160 GTKKGKYVPPSMRAGADRASG--SDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVT 237 (270)
T ss_pred CCcCccccCccccCCcccccc--cccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEE
Confidence 345566888877766532222 345566689999999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 123 FSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 123 f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
|.+.++|.+||..|||+-+++..|+|+|++|+
T Consensus 238 F~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 238 FESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred EecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 99999999999999999999999999999985
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=1.4e-18 Score=137.15 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
..+.+|||+|||.++++++|+++|++||.|..++++.+..+|.++|||||+|.+.++|.+||..|||..++|++|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44567999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCC
Q 040633 152 ETGL 155 (167)
Q Consensus 152 ~~~~ 155 (167)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=3.3e-18 Score=134.99 Aligned_cols=84 Identities=32% Similarity=0.537 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...+|||+|||.++++++|+++|+.||.|..++++.++.+|+++|||||+|.+.++|++||+.|||..+.|+.|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040633 153 TGLS 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=4.9e-18 Score=133.39 Aligned_cols=87 Identities=24% Similarity=0.405 Sum_probs=82.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|+.||.|..|+|+.+..+++++|||||+|.++++|++||+.|++..+.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|.++++.
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9999764
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=1.1e-17 Score=102.07 Aligned_cols=70 Identities=37% Similarity=0.620 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
|||+|||.++++++|+++|++||.+..+.+..+ .++..+++|||+|.+.++|+.|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6688999999999999999999999999999999885
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=9.3e-18 Score=126.85 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=86.2
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 66 STESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 66 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.........++|+|+|||+...+.||+.+|++||.|.+|.|+.+. ..+|||+||+|++.+||++|-+.|||..+.||+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 344566778999999999999999999999999999999998764 458999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCCC
Q 040633 146 ILVKIAETGLSKNRGRRTRY 165 (167)
Q Consensus 146 l~v~~a~~~~~~~~~~r~~~ 165 (167)
|+|..|..+...+.++...|
T Consensus 166 IEVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 166 IEVNNATARVHNKKKKVLPY 185 (376)
T ss_pred EEEeccchhhccCCcccCCC
Confidence 99999987766666555443
No 8
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=6.6e-18 Score=122.55 Aligned_cols=80 Identities=30% Similarity=0.460 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
-.-++||||||++.+..++|++.|++||+|.+..++.|+.+|+++||+||+|.+.++|.+||+..+ -.|+||+.+|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 345789999999999999999999999999999999999999999999999999999999999644 6799999999988
Q ss_pred c
Q 040633 152 E 152 (167)
Q Consensus 152 ~ 152 (167)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1.6e-16 Score=124.87 Aligned_cols=84 Identities=30% Similarity=0.568 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG--RFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g--~~l~v~ 149 (167)
...++|||+|||..+++++|+++|++||.|..+.++.++.+++.++||||+|.+.++|++||+.||+..+.+ ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998899999999999999999999999999998865 689999
Q ss_pred EccCCC
Q 040633 150 IAETGL 155 (167)
Q Consensus 150 ~a~~~~ 155 (167)
+++...
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 997543
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=117.87 Aligned_cols=98 Identities=19% Similarity=0.400 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 61 SNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
|++..-.....++-+||||+.|++++++..|+..|+.||.|+.+.|++++.||+++|||||+|..+.+...|-+..+|.+
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 34333334456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCCCC
Q 040633 141 FYGRFILVKIAETGLSKN 158 (167)
Q Consensus 141 i~g~~l~v~~a~~~~~~~ 158 (167)
|+|+.|.|.+-+....+.
T Consensus 168 Idgrri~VDvERgRTvkg 185 (335)
T KOG0113|consen 168 IDGRRILVDVERGRTVKG 185 (335)
T ss_pred ecCcEEEEEecccccccc
Confidence 999999999987655543
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=4.7e-16 Score=95.15 Aligned_cols=70 Identities=41% Similarity=0.589 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
|||+|||..+++++|+++|+.+|.|..+.+..++. +..+++|||+|.+.++|++|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999875
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=3.4e-16 Score=129.73 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+||+.++++++|+++|+.||.|..+++..+..+|+.+|||||+|.+.++|.+||+.||+..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 040633 152 ETGLSK 157 (167)
Q Consensus 152 ~~~~~~ 157 (167)
.+.+..
T Consensus 282 i~pP~~ 287 (612)
T TIGR01645 282 VTPPDA 287 (612)
T ss_pred CCCccc
Confidence 765443
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.2e-16 Score=109.17 Aligned_cols=80 Identities=28% Similarity=0.428 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++||||||+..+++.||+..|..||.+..|.|... ..|||||+|++..+|+.|+..|+|..|.|.+|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 44789999999999999999999999999999988764 4599999999999999999999999999999999999
Q ss_pred cCCCC
Q 040633 152 ETGLS 156 (167)
Q Consensus 152 ~~~~~ 156 (167)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86655
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.6e-16 Score=128.92 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+||++.+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 040633 152 ET 153 (167)
Q Consensus 152 ~~ 153 (167)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.8e-16 Score=104.28 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
....+++||||||.+.+++++|.++|+++|.|..+.|-.++.+-...||+||+|.+.++|+.|++-++|..++.++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34568999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
|.-.-
T Consensus 112 ~D~GF 116 (153)
T KOG0121|consen 112 WDAGF 116 (153)
T ss_pred ccccc
Confidence 98543
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.9e-16 Score=116.14 Aligned_cols=89 Identities=28% Similarity=0.488 Sum_probs=83.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
....|||+-|...++.++|++.|.+||+|.++++++|..|++++||+||.|-..++|+.||..|||..|++|.|+..||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCC
Q 040633 153 TGLSKNRGR 161 (167)
Q Consensus 153 ~~~~~~~~~ 161 (167)
.++.....+
T Consensus 141 RKp~e~n~~ 149 (321)
T KOG0148|consen 141 RKPSEMNGK 149 (321)
T ss_pred cCccccCCC
Confidence 887555443
No 17
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-16 Score=114.88 Aligned_cols=93 Identities=28% Similarity=0.483 Sum_probs=86.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++||||+|..++++.-|...|-.||.|..+++..|..+++.|||+||+|...|+|.+||..||+.++.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCC
Q 040633 151 AETGLSKNRGRRT 163 (167)
Q Consensus 151 a~~~~~~~~~~r~ 163 (167)
|+|..-+++..+-
T Consensus 87 AkP~kikegsqkP 99 (298)
T KOG0111|consen 87 AKPEKIKEGSQKP 99 (298)
T ss_pred cCCccccCCCCCC
Confidence 9988777766543
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=9.4e-16 Score=120.12 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~ 147 (167)
.....++.||||.||.++.+++|..+|++.|.|-+++++.++.+|.+||||||.|.+.++|+.||+.||+++|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999986 99999
Q ss_pred EEEcc
Q 040633 148 VKIAE 152 (167)
Q Consensus 148 v~~a~ 152 (167)
|+.+.
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 88874
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=1.7e-15 Score=126.44 Aligned_cols=79 Identities=25% Similarity=0.474 Sum_probs=75.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 76 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
.|||+|||.++++++|+++|++||.|..|+++++..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998643
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=2.2e-15 Score=112.39 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.++|||+||++.+++++|+++|+.||.|.++.|+.++. .+|||||+|.+.++|+.||. |+|..|.|+.|+|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999988753 46899999999999999996 99999999999999996
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=2e-15 Score=119.91 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCH--HHHHHHHHHhCCceeCCeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRK--ESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~--~~a~~al~~l~g~~i~g~~l~ 147 (167)
......+||||||++.+++++|+..|..||.|..+.|+ +.+| ||||||+|.+. .++.+||..|||..+.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 44556899999999999999999999999999999998 4556 99999999976 789999999999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|..|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999753
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=7.5e-16 Score=110.02 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=80.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+......|-|.||.+.++.++|+.+|++||.|-+|.|..++.|+..+|||||.|.+..+|+.|++.|+|..++|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
++|+-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 99973
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=5.7e-15 Score=121.86 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
....+|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|+.||+.|+|..++|+.|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 040633 152 ET 153 (167)
Q Consensus 152 ~~ 153 (167)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 24
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.5e-16 Score=114.70 Aligned_cols=91 Identities=22% Similarity=0.364 Sum_probs=86.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
..+.+++|.|||..||.+..+.||.++|-.||.|...++..|+.|+.+++|+||.|++..+++.||..|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCC
Q 040633 148 VKIAETGLSKN 158 (167)
Q Consensus 148 v~~a~~~~~~~ 158 (167)
|++.+++..++
T Consensus 359 VQLKRPkdanR 369 (371)
T KOG0146|consen 359 VQLKRPKDANR 369 (371)
T ss_pred hhhcCccccCC
Confidence 99999876554
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6.5e-15 Score=108.68 Aligned_cols=88 Identities=28% Similarity=0.498 Sum_probs=82.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.+...+.|.|--||..++.+|++.+|...|+|+.|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
+|+|.++.
T Consensus 117 yARPSs~~ 124 (360)
T KOG0145|consen 117 YARPSSDS 124 (360)
T ss_pred eccCChhh
Confidence 99987654
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=4.4e-15 Score=121.07 Aligned_cols=80 Identities=28% Similarity=0.413 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...+|||+|||..+++++|+++|+.||.|..+.+..+..+|..+|||||+|.+.++|..|++.|+|..|.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999975
No 27
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=7.7e-17 Score=112.91 Aligned_cols=88 Identities=34% Similarity=0.551 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 040633 65 NSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR 144 (167)
Q Consensus 65 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~ 144 (167)
.++..+..++.-|||||||++.++.+|.-+|++||.+..+.+++|+.||+++||||+.|++..+..-|+..|||..|.|+
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcc
Q 040633 145 FILVKIAE 152 (167)
Q Consensus 145 ~l~v~~a~ 152 (167)
.|+|..--
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 99998763
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=2.9e-15 Score=125.07 Aligned_cols=85 Identities=26% Similarity=0.495 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.....+|||+||+..+++++|+++|+.||.|..++++.+ .+|.++|||||+|.+.++|++|+..|||..++|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999988 6799999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 040633 151 AETGLS 156 (167)
Q Consensus 151 a~~~~~ 156 (167)
+..+..
T Consensus 361 a~~k~~ 366 (562)
T TIGR01628 361 AQRKEQ 366 (562)
T ss_pred ccCcHH
Confidence 986543
No 29
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.62 E-value=1.1e-15 Score=122.22 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=80.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
+.|||||+|+++++++|.++|+..|.|..++++.|+.||+.+||||++|.+.+++++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCC
Q 040633 155 LSKN 158 (167)
Q Consensus 155 ~~~~ 158 (167)
..++
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5443
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.4e-15 Score=109.47 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...++++|||||++..+++++|++.|..||.|.+|++..++ ||+||.|+++|+|.+||..+|+.+|+|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 56789999999999999999999999999999999999876 999999999999999999999999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
|.+...+
T Consensus 234 WGKe~~~ 240 (321)
T KOG0148|consen 234 WGKEGDD 240 (321)
T ss_pred ccccCCC
Confidence 9986544
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=9.3e-15 Score=88.54 Aligned_cols=72 Identities=38% Similarity=0.589 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 76 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+|||+|||..+++++|+++|..||.+..+.+..+. +..+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888765 7788999999999999999999999999999998874
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=7.2e-15 Score=121.58 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFILVK 149 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~v~ 149 (167)
....++|||+|||.++++++|+++|++||.|..++|+.+ .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445799999999999999999999999999999999999 78999999999999999999999999999985 7777776
Q ss_pred Ec
Q 040633 150 IA 151 (167)
Q Consensus 150 ~a 151 (167)
.+
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 55
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=9.3e-15 Score=119.18 Aligned_cols=83 Identities=25% Similarity=0.404 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|+++|++||.|..|.++.++.+|+.+|||||+|.+.++|++||. |+|..+.|++|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred EccC
Q 040633 150 IAET 153 (167)
Q Consensus 150 ~a~~ 153 (167)
.+..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 8754
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.5e-15 Score=99.43 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
+.....+-.|||.++....++++|.+.|..||.|+.+.+..++.||..+|||.|+|.+.++|++|+..|||..+.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 040633 148 VKIAET 153 (167)
Q Consensus 148 v~~a~~ 153 (167)
|.|+--
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 999853
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=1.7e-14 Score=87.06 Aligned_cols=71 Identities=38% Similarity=0.604 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 79 IKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 79 V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
|+|||..+++++|+++|+.||.+..+.+..++.++..+++|||+|.+.++|..|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999998874
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.58 E-value=3e-15 Score=104.93 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+.....+||||||+..++++.|+++|-+.|.|.++.+.+++.++..+||||++|.++|+|+-|++.||..++.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 040633 150 IAE 152 (167)
Q Consensus 150 ~a~ 152 (167)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 986
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.5e-14 Score=113.13 Aligned_cols=91 Identities=21% Similarity=0.415 Sum_probs=81.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee-C--C
Q 040633 67 TESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF-Y--G 143 (167)
Q Consensus 67 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i-~--g 143 (167)
...++.+..++|||.+|+.|+|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+..||+.+. - .
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 344557788999999999999999999999999999999999999999999999999999999999999999763 2 5
Q ss_pred eEEEEEEccCCCCC
Q 040633 144 RFILVKIAETGLSK 157 (167)
Q Consensus 144 ~~l~v~~a~~~~~~ 157 (167)
.+|.|++|+...++
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 68999999875554
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=2.6e-14 Score=107.58 Aligned_cols=80 Identities=35% Similarity=0.577 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
.++|||+|||.++++++|.++|..||.+..+.+..++.+|..+|||||.|.+.++|..|++.++|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999653
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.57 E-value=3.6e-14 Score=104.52 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
..+.+|||+||+..+++++|+++|+.||.|..+.|+.+. ...++|||+|.++++++.|+. |+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999874 445899999999999999996 9999999999999886
Q ss_pred c
Q 040633 152 E 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=3.2e-14 Score=117.73 Aligned_cols=78 Identities=33% Similarity=0.468 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQF--GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
....+|||+||+..+++++|+++|++| |.|.+|.++. +||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999987653 699999999999999999999999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
++++....
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99876443
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.1e-14 Score=101.10 Aligned_cols=80 Identities=21% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...+.|||||||.++.+.+|+++|-+||.|..+.+... ....+||||+|++..+|+.||..-+|+.++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999987543 335689999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 754
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=3.9e-15 Score=116.32 Aligned_cols=90 Identities=32% Similarity=0.448 Sum_probs=80.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce-eCC--eEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF-FYG--RFILV 148 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~-i~g--~~l~v 148 (167)
.+.++||||.|+...++.|++++|.+||.|++|.|.++.. +.+||||||.|++++.|..||+.|||.. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4578999999999999999999999999999999999865 8899999999999999999999999975 554 49999
Q ss_pred EEccCCCCCCCCCC
Q 040633 149 KIAETGLSKNRGRR 162 (167)
Q Consensus 149 ~~a~~~~~~~~~~r 162 (167)
+||+++.++..++.
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99999877766554
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=7.8e-15 Score=102.90 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=94.4
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCCceEEEEEeCCHHH
Q 040633 50 SHPSLQTKCSGSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQV-KIVTEKLSKQPLGSAFVWFSRKES 128 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~ 128 (167)
+.-.+.+++++.+.......+.+.+..+||+||...+++..|.+.|+.||.+... ++.++..||..+||+||.|.+.+.
T Consensus 72 n~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 72 NMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred HHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 3445667777666655555677778999999999999999999999999998654 788888999999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEccCCCCCC
Q 040633 129 ADLAVENMNGKFFYGRFILVKIAETGLSKN 158 (167)
Q Consensus 129 a~~al~~l~g~~i~g~~l~v~~a~~~~~~~ 158 (167)
+.+|++.|||..+.++++.|.++..+..++
T Consensus 152 sd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999999999998766555
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=1.4e-13 Score=113.02 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 71 TSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 71 ~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...+++|||+||+. .+++++|+++|+.||.|..++++.++ +|||||+|.+.++|+.||..|||..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999997 69999999999999999999998763 4999999999999999999999999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.52 E-value=2.4e-13 Score=82.63 Aligned_cols=74 Identities=39% Similarity=0.616 Sum_probs=68.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 76 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
+|+|+|||..+++++|+++|+.+|.+..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999876543 6789999999999999999999999999999999864
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=88.50 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
......|||.|||+.++.++..++|.+||.|..+++-..+ ..+|-|||.|++..+|.+|++.|.|+.+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3456889999999999999999999999999999987554 3579999999999999999999999999999999998
Q ss_pred ccCC
Q 040633 151 AETG 154 (167)
Q Consensus 151 a~~~ 154 (167)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.4e-13 Score=100.45 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
....+-+|||.||..+.++..|+++|.+||.|..|++++|..+.+.+||+||.+.+-++|..||..|||+.++++.|+|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 44457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 98654
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=2.2e-13 Score=111.89 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEEc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM--NGKFFYGRFILVKIA 151 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~g~~i~g~~l~v~~a 151 (167)
+++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|+..| ++..+.|++|+|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999998854 389999999999999999964 778999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=9.5e-14 Score=103.85 Aligned_cols=72 Identities=31% Similarity=0.509 Sum_probs=68.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
.++||||||..+++.+|+.+|++||+|.+|.|+. .||||..++...++.||+.|||+.|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5799999999999999999999999999999986 58999999999999999999999999999999999876
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=6e-13 Score=77.87 Aligned_cols=56 Identities=46% Similarity=0.663 Sum_probs=50.5
Q ss_pred HHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 91 VKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 91 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
|.++|++||.|..+.+.... +++|||+|.+.++|+.|++.|||..+.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987543 589999999999999999999999999999999986
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.46 E-value=5.9e-13 Score=81.51 Aligned_cols=62 Identities=29% Similarity=0.612 Sum_probs=55.0
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 88 EGRVKKAFS----QFGEVVQVK-IVTEKLS--KQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 88 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+++|+++|. +||.|..+. +..++.+ ++.+||+||.|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 6666666 8899999999999999999999999999999999863
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.9e-13 Score=106.34 Aligned_cols=79 Identities=35% Similarity=0.458 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.-..|||.||+.++|++.|+++|++||.|.+|+.++ .||||.|.+.++|-+|++.+||.+|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 357899999999999999999999999999998764 599999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040633 153 TGLSKNR 159 (167)
Q Consensus 153 ~~~~~~~ 159 (167)
|...++.
T Consensus 330 P~~k~k~ 336 (506)
T KOG0117|consen 330 PVDKKKK 336 (506)
T ss_pred Chhhhcc
Confidence 8655543
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.41 E-value=4.7e-13 Score=107.45 Aligned_cols=78 Identities=27% Similarity=0.475 Sum_probs=74.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
||||||.+++++++|+.+|+.||.|..|.+..+..||..+||+||+|.+.++|..|++.|||.++-|+.|+|....-+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999999999999999889999999999999999999999999999999999999887543
No 54
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=93.41 Aligned_cols=87 Identities=22% Similarity=0.407 Sum_probs=79.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQF-GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
.........+||..+|..+.+.++..+|.+| |.+.++++.+++.||.++|||||+|++++.|+.|-+.||++.+.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3455567789999999999999999999987 778899999999999999999999999999999999999999999999
Q ss_pred EEEEccCC
Q 040633 147 LVKIAETG 154 (167)
Q Consensus 147 ~v~~a~~~ 154 (167)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99998654
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.8e-13 Score=105.41 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
-|+||||.+.+.+.++.|+..|..||.|+.+.+..|..|++.+|||||+|+-.|.|+-|++.|||..++|+.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999988743
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3e-12 Score=102.91 Aligned_cols=82 Identities=33% Similarity=0.428 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
.-.|.|.|||+.+...+|+.+|+.||.|..+.|++... |+.+|||||+|....+|+.||+.+||.+|+|++|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67899999999999999999999999999999997554 66679999999999999999999999999999999999976
Q ss_pred CCC
Q 040633 154 GLS 156 (167)
Q Consensus 154 ~~~ 156 (167)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 544
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.6e-12 Score=103.31 Aligned_cols=86 Identities=28% Similarity=0.362 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.+.+|||++||+.++.++|.++|+.+|.|..+.++.+..++..|||+||.|.-.+++++|+...++..++|+.|+|..++
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 040633 153 TGLSKN 158 (167)
Q Consensus 153 ~~~~~~ 158 (167)
.+...+
T Consensus 84 ~R~r~e 89 (678)
T KOG0127|consen 84 KRARSE 89 (678)
T ss_pred ccccch
Confidence 665544
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=5.1e-12 Score=99.36 Aligned_cols=79 Identities=27% Similarity=0.342 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFS-QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
..+.+||.|||+++.+++|+++|. +-|.|..|.+..| .+|+.+|+|.|+|+++|.+++|++.||.+.+.|+.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999997 6899999999988 56999999999999999999999999999999999999876
Q ss_pred c
Q 040633 152 E 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 4
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=1.3e-11 Score=89.61 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 74 RTGIFIKGLPESMTEGRVKK----AFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
..++||.||.+.+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|-.|++.|+|..+.|++++|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999988 99999999998775 457899999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
+|+.+.+-
T Consensus 86 yA~s~sdi 93 (221)
T KOG4206|consen 86 YAKSDSDI 93 (221)
T ss_pred cccCccch
Confidence 99876654
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6e-12 Score=96.65 Aligned_cols=89 Identities=22% Similarity=0.350 Sum_probs=82.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 67 TESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 67 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
.+.-.++.+.|||..|-..+++++|.-+|+.||.|..|.++++..||.+..||||+|++.+++++|.-.|+++.|++++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 040633 147 LVKIAETGL 155 (167)
Q Consensus 147 ~v~~a~~~~ 155 (167)
+|.++...+
T Consensus 312 HVDFSQSVs 320 (479)
T KOG0415|consen 312 HVDFSQSVS 320 (479)
T ss_pred Eeehhhhhh
Confidence 999986543
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.9e-11 Score=96.91 Aligned_cols=79 Identities=34% Similarity=0.569 Sum_probs=73.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 040633 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETGLS 156 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~~~ 156 (167)
+||.||+.+++..+|.++|+.||.|..|++..+.+ | ++|| ||+|+++++|++|++.|||..+.|++|.|-....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999864 4 8999 9999999999999999999999999999988876555
Q ss_pred CC
Q 040633 157 KN 158 (167)
Q Consensus 157 ~~ 158 (167)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 44
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.28 E-value=6.1e-11 Score=98.77 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
-++|||||+|+..+++.+|..+|+.||.|..|.++.. +++|||.+....+|++|+..|..+.+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3899999999999999999999999999999988754 5999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 040633 153 TGLSKN 158 (167)
Q Consensus 153 ~~~~~~ 158 (167)
.+.-+.
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 764443
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.23 E-value=4.7e-11 Score=98.68 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcC------------CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQF------------GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 136 (167)
......++|||||||..+++++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 455667899999999999999999999975 23333333 3456999999999999999995 9
Q ss_pred CCceeCCeEEEEEEc
Q 040633 137 NGKFFYGRFILVKIA 151 (167)
Q Consensus 137 ~g~~i~g~~l~v~~a 151 (167)
+|..+.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 999999999999754
No 64
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.22 E-value=1.9e-10 Score=93.30 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...-++.|||.+|.-.+...+|+.+|++||.|.-.+++.+..+...++|+||++++.++|.+||+.||..++.|+.|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34457889999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
.++..+.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9986544
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=88.97 Aligned_cols=81 Identities=28% Similarity=0.498 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 040633 67 TESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM-NGKFFYGRF 145 (167)
Q Consensus 67 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l-~g~~i~g~~ 145 (167)
.+.++....+|||++|-..+++.+|+++|.+||.|..+.+...+ ++|||+|.+.+.|+.|.+.. +...|+|.+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 45667778999999999999999999999999999999887754 79999999999999998854 445689999
Q ss_pred EEEEEccC
Q 040633 146 ILVKIAET 153 (167)
Q Consensus 146 l~v~~a~~ 153 (167)
|.|.|+++
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999988
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=4e-11 Score=89.98 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.....+++||||....+.+||+..|++||.+.++++++ +|+||.|+-.++|..|++.|++.+++|++|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34578999999999999999999999999999999986 6999999999999999999999999999999999
Q ss_pred ccCCCC
Q 040633 151 AETGLS 156 (167)
Q Consensus 151 a~~~~~ 156 (167)
+..+..
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 975433
No 67
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.15 E-value=2.4e-10 Score=91.34 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
........|||.|||.+++..+|+++|..||.|+...|......++..+||||+|.+.++++.||+. +-..|++++|.|
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 3444556699999999999999999999999999887766443345559999999999999999995 567899999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
+..++..++.+
T Consensus 362 eek~~~~~g~~ 372 (419)
T KOG0116|consen 362 EEKRPGFRGNG 372 (419)
T ss_pred Eeccccccccc
Confidence 99987555443
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.1e-10 Score=86.81 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY---GRFILV 148 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~---g~~l~v 148 (167)
.+.++||||.|.+.-.|+|++.+|..||.+.+|.+.+... |.++|++||.|.+.-+|+.||..|||.... ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3678999999999999999999999999999999988754 889999999999999999999999997643 457999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
++++...+
T Consensus 96 K~ADTdkE 103 (371)
T KOG0146|consen 96 KFADTDKE 103 (371)
T ss_pred EeccchHH
Confidence 99976433
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.13 E-value=1.5e-09 Score=78.87 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKL-SKQPLGSAFVWFSRKESADLAVENMNGKFFY---GRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~al~~l~g~~i~---g~~ 145 (167)
+...-++|||.+||.++...||..+|..|-..+...+..... ....+.+||+.|.+..+|.+|+..|||+.++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 334468999999999999999999999987766665543322 1234589999999999999999999999987 778
Q ss_pred EEEEEccCCCCCC
Q 040633 146 ILVKIAETGLSKN 158 (167)
Q Consensus 146 l~v~~a~~~~~~~ 158 (167)
|++++|+.....+
T Consensus 110 LhiElAKSNtK~k 122 (284)
T KOG1457|consen 110 LHIELAKSNTKRK 122 (284)
T ss_pred eEeeehhcCcccc
Confidence 9999998544433
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.13 E-value=9.4e-11 Score=90.48 Aligned_cols=87 Identities=26% Similarity=0.361 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+.+++|||+|.++++++.|++.|.+||.+.++.+++++.+++.+||+||+|.+.+...+++.. .-+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 789999999999999999999999999999999999999999999999999999999999873 4477999999999987
Q ss_pred CCCCCCCC
Q 040633 153 TGLSKNRG 160 (167)
Q Consensus 153 ~~~~~~~~ 160 (167)
+.....+.
T Consensus 84 ~r~~~~~~ 91 (311)
T KOG4205|consen 84 SREDQTKV 91 (311)
T ss_pred Cccccccc
Confidence 76655443
No 71
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.12 E-value=6.9e-11 Score=87.17 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 63 SSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 63 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
...+..+...+..+||+|.|-.+++++.|-..|.+|-.....++++++.||+++||+||.|.+..++.+|+..|+|..++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 33445667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 040633 143 GRFILVKIAETGL 155 (167)
Q Consensus 143 g~~l~v~~a~~~~ 155 (167)
.++|+++-+..+.
T Consensus 259 srpiklRkS~wke 271 (290)
T KOG0226|consen 259 SRPIKLRKSEWKE 271 (290)
T ss_pred cchhHhhhhhHHh
Confidence 9999887765544
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.4e-10 Score=89.22 Aligned_cols=74 Identities=23% Similarity=0.430 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
..|||| .++++..|.+.|+.+|.+..++++++. | +.|||||.|.+.++|++||..||...+.|++++|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 458999 899999999999999999999999997 6 9999999999999999999999999999999999998654
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.7e-09 Score=89.58 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSK---QPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.+++||.||.++++.+++...|...|.|..+.|...+... -+.|||||+|.+.++|++|++.|+|..++|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3349999999999999999999999999999887654321 2459999999999999999999999999999999999
Q ss_pred ccCC
Q 040633 151 AETG 154 (167)
Q Consensus 151 a~~~ 154 (167)
+..+
T Consensus 595 S~~k 598 (725)
T KOG0110|consen 595 SENK 598 (725)
T ss_pred ccCc
Confidence 9833
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=3.4e-10 Score=89.24 Aligned_cols=77 Identities=29% Similarity=0.360 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
-....++|||.|||++.|++.|++-|..||.|+.+.|+ .+|+.+| .|.|.++++|++||..|+|..+.|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 45668999999999999999999999999999999884 3477776 999999999999999999999999999998
Q ss_pred Ec
Q 040633 150 IA 151 (167)
Q Consensus 150 ~a 151 (167)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.9e-10 Score=86.67 Aligned_cols=83 Identities=19% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+...-++|||..+..+.+++||+..|+-||.|..|.+.++..++..+||+||+|.+..+...||..||-..++|.-|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 44557899999999999999999999999999999999998888899999999999999999999999999999999987
Q ss_pred Ecc
Q 040633 150 IAE 152 (167)
Q Consensus 150 ~a~ 152 (167)
..-
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 653
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.04 E-value=4.9e-10 Score=86.54 Aligned_cols=84 Identities=33% Similarity=0.431 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...++||++||.+++++++++.|.+||.|..+.++.|+.+.+.++|+||.|.+++.+++++. ..-+.+.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 56799999999999999999999999999999999999999999999999999999999988 67788999999999998
Q ss_pred CCCCC
Q 040633 153 TGLSK 157 (167)
Q Consensus 153 ~~~~~ 157 (167)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 76544
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=2.1e-10 Score=94.76 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
.+.|+|.|||+..+..+++++|..||.+..|++..-...+.++|||||+|-+..+|.+|+..|....+.|++|.++||+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 68999999999999999999999999999999987645567899999999999999999999999999999999999964
Q ss_pred C
Q 040633 154 G 154 (167)
Q Consensus 154 ~ 154 (167)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 3
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=2.5e-09 Score=79.81 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.+.....|+|.|||+.+.+++|+++|..||.+..+.+.++ .+|.+.|.|-|.|...++|++|++.+||+.++|++|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3444588999999999999999999999999888888777 459999999999999999999999999999999999998
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
...+.
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 88543
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.00 E-value=2.1e-09 Score=82.50 Aligned_cols=81 Identities=22% Similarity=0.429 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV--------QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
...+..|||.|||.++|.+++.++|+++|.|. .|++.+++. |+.+|=|.+.|...++.+-|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45577799999999999999999999999876 578887755 999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 040633 143 GRFILVKIAE 152 (167)
Q Consensus 143 g~~l~v~~a~ 152 (167)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999996
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.93 E-value=3.5e-09 Score=78.92 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+...+||+|+.+..+.+++...|+.||.+..+.+..++..|..+||+||+|.+.+.++.++. |+|..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 567788999999999999999999999999999999999999888999999999999999999999 9999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
.+.+.
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 98863
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.8e-09 Score=78.98 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=66.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
..+|||+||+...+.+|..+|..||.+.++.+.. ||+||+|.+..+|+.|+..||+..+.|..+.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4689999999999999999999999999988743 7889999999999999999999999999999999985
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.85 E-value=5.9e-08 Score=62.66 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhc--CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQ--FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY----GRFILV 148 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~----g~~l~v 148 (167)
++|.|.|||...+.++|.+++.. .|....+-++.|..++.+.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998874 466778888888888999999999999999999999999999875 667888
Q ss_pred EEccCC
Q 040633 149 KIAETG 154 (167)
Q Consensus 149 ~~a~~~ 154 (167)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=6.1e-09 Score=84.29 Aligned_cols=74 Identities=20% Similarity=0.375 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
+......+|+|-|||..+++++|..+|+.||+|..++.-. ..++..||+|.|..+|++|++.|++.++.|++|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4466789999999999999999999999999999865443 3569999999999999999999999999999888
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=4.4e-09 Score=76.27 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
....+|||+|+...++++.|.++|-+.|.|.+|.|..++. ++.+ ||||.|.++....-|++.|||..+.+..++|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3458999999999999999999999999999999987764 5555 9999999999999999999999999999888877
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
.+.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.67 E-value=6.3e-08 Score=80.54 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK---LSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
...+..+.+||+||+..++++.|...|..||.+..++++..+ .....+.++||.|-+..+|++|+..|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 346678999999999999999999999999999999988643 22456679999999999999999999999999999
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
+++-|++..
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999999654
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.5e-08 Score=79.60 Aligned_cols=86 Identities=26% Similarity=0.403 Sum_probs=79.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
..-....+.+||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..++++.|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 34556688999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEccC
Q 040633 148 VKIAET 153 (167)
Q Consensus 148 v~~a~~ 153 (167)
|+.|-.
T Consensus 363 vq~A~~ 368 (500)
T KOG0120|consen 363 VQRAIV 368 (500)
T ss_pred eehhhc
Confidence 999853
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.58 E-value=3.3e-07 Score=72.08 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=69.0
Q ss_pred CCEEEEcCC-CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 74 RTGIFIKGL-PESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 74 ~~~l~V~nL-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+..|.|.|| +..+|.+.|.-+|..||.|.+|+|..++. .-|.|+|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678888888 57889999999999999999999988653 679999999999999999999999999999999997
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=3e-07 Score=71.18 Aligned_cols=89 Identities=34% Similarity=0.444 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV--------QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK 139 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 139 (167)
........+|||-+|+..+++++|.++|.++|.|. .+.+.+++.|+..++-|.|.|.+...|++|++.+++.
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34467788999999999999999999999999886 4567788899999999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCCC
Q 040633 140 FFYGRFILVKIAETGLS 156 (167)
Q Consensus 140 ~i~g~~l~v~~a~~~~~ 156 (167)
.+.|..|+|.++..+..
T Consensus 140 df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCCCchhhhhhhccC
Confidence 99999999999976553
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.39 E-value=1.3e-07 Score=76.71 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=79.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 67 TESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 67 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
...++.+.++||+..|....+..+|.++|+.+|.|..|.++.++.++.++|.+||+|.+.+....||. |.|..+.|.+|
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 34577889999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred EEEEcc
Q 040633 147 LVKIAE 152 (167)
Q Consensus 147 ~v~~a~ 152 (167)
.|+...
T Consensus 251 ~vq~sE 256 (549)
T KOG0147|consen 251 IVQLSE 256 (549)
T ss_pred EecccH
Confidence 998874
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.39 E-value=2.8e-06 Score=68.32 Aligned_cols=82 Identities=27% Similarity=0.381 Sum_probs=68.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+......|-+.+|||+.|++||.++|+-++ |..+.+. +.+|+..|-|||+|.++++++.|++ .+...++.+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 445567788899999999999999999985 4555444 4569999999999999999999999 68788889999998
Q ss_pred EccCCC
Q 040633 150 IAETGL 155 (167)
Q Consensus 150 ~a~~~~ 155 (167)
-+.+..
T Consensus 82 ~~~~~e 87 (510)
T KOG4211|consen 82 TAGGAE 87 (510)
T ss_pred ccCCcc
Confidence 885543
No 91
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.23 E-value=8e-06 Score=59.71 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~v 148 (167)
.......+|+.|||..++.+.+..+|.+|....+++++... .+.|||+|.+...+..|...++|..|. ...++|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 46678899999999999999999999999999999988654 389999999999999999999999987 778888
Q ss_pred EEcc
Q 040633 149 KIAE 152 (167)
Q Consensus 149 ~~a~ 152 (167)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8774
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.21 E-value=2.7e-05 Score=60.94 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 68 ESDTSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
+....+++.+.|.+|.. .++.+.|..+|..||.|.++++++.+. |-|.|++.+..+.++|+..||+..+.|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 35667789999999986 456678999999999999999998754 789999999999999999999999999999
Q ss_pred EEEEccC
Q 040633 147 LVKIAET 153 (167)
Q Consensus 147 ~v~~a~~ 153 (167)
.|..++.
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9999964
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.20 E-value=4.1e-06 Score=55.13 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEE
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK-----FFYGRFILV 148 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-----~i~g~~l~v 148 (167)
++.|.+.++...++.++|++.|+.||.|..|.+.... .-|||.|.+.+.|+.|++.+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3578899999999999999999999999999886643 56899999999999999976644 455655555
Q ss_pred EE
Q 040633 149 KI 150 (167)
Q Consensus 149 ~~ 150 (167)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.16 E-value=1.6e-06 Score=66.84 Aligned_cols=85 Identities=27% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCCEEE-EcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIF-IKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~-V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++| |+++++++++++|+..|..+|.|..+++..+..++..+|||||.|.....+..++.. +...+.++.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3345555 999999999999999999999999999999999999999999999999999999987 88899999999999
Q ss_pred ccCCCCC
Q 040633 151 AETGLSK 157 (167)
Q Consensus 151 a~~~~~~ 157 (167)
.++.+..
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 9876443
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=4.1e-06 Score=52.11 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=47.0
Q ss_pred CEEEEcCCCCCCCHHHH----HHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 75 TGIFIKGLPESMTEGRV----KKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l----~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
..|+|.|||.+.+...+ ++++.-+| .|..+. .+-|+|.|.+.+.|++|...|+|-.+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999888655 55666665 455441 1679999999999999999999999999999999
Q ss_pred EccC
Q 040633 150 IAET 153 (167)
Q Consensus 150 ~a~~ 153 (167)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9843
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=1.7e-05 Score=63.90 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ-VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.....|-+.+||+.++++||.++|...-.+.. +-++.+ ..++..|-|||+|++.+.|+.|+. -|...|+.+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 46678999999999999999999998766555 334444 347788999999999999999999 466778888888876
Q ss_pred c
Q 040633 151 A 151 (167)
Q Consensus 151 a 151 (167)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 6
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.14 E-value=3.3e-06 Score=61.78 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=57.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
......++||.||..++++++|+++|+.|.....++|... ...+.||++|++.+.|..|+..|+|..|.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3444678999999999999999999999988777776432 23478999999999999999999997764
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.09 E-value=1e-05 Score=62.53 Aligned_cols=81 Identities=17% Similarity=0.440 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCCCHHHH------HHHhhcCCCeEEEEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 72 SSRTGIFIKGLPESMTEGRV------KKAFSQFGEVVQVKIVTEK---LSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l------~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
....-+||-+|+..+..++. .++|.+||.|..+.+.+.. ++-..--..||.|.+.++|.+||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34567899999988887762 4689999999988765422 11111123599999999999999999999999
Q ss_pred CeEEEEEEcc
Q 040633 143 GRFILVKIAE 152 (167)
Q Consensus 143 g~~l~v~~a~ 152 (167)
|+-|+..+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998874
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=5.1e-06 Score=60.99 Aligned_cols=74 Identities=30% Similarity=0.381 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....+.+.|.++...+...+|.+.|..+|.+....+ .++++||+|+..++|.+|+..|+|..+.|+.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 4566789999999999999999999999999844333 34789999999999999999999999999999995
Q ss_pred Ec
Q 040633 150 IA 151 (167)
Q Consensus 150 ~a 151 (167)
..
T Consensus 167 ~~ 168 (216)
T KOG0106|consen 167 KN 168 (216)
T ss_pred cc
Confidence 54
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.02 E-value=1e-05 Score=62.83 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFG--EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.+-...++|||||-|++++++|.+.+...| .+.++++..++.+|.++|||.|...+....++-++.|.-..|+|..
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 444567899999999999999999988776 4778888888889999999999999999999999999999998874
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.96 E-value=4.2e-05 Score=64.15 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..+.|-+.|+|++++-+||.++|..|-.+-.-.+.+-.+.|+..|-|.|.|++.++|.+|...|++..|.++.+.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344788899999999999999999997764433334446699999999999999999999999999999999887754
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.86 E-value=0.00011 Score=57.68 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=60.8
Q ss_pred cCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-C-eEEEEEEccCCCC
Q 040633 80 KGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-G-RFILVKIAETGLS 156 (167)
Q Consensus 80 ~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g-~~l~v~~a~~~~~ 156 (167)
-|--+.++-+-|..+....|+|.++.|.+.+ | --|.|+|++.+.|++|.+.|||..|. | ..|+|++|++..-
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 3556789999999999999999999887642 2 56999999999999999999999875 4 3799999987643
No 103
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.85 E-value=6.7e-06 Score=61.19 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=59.4
Q ss_pred HHHHHHhh-cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCCCCCC
Q 040633 89 GRVKKAFS-QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETGLSKNRGRRTRY 165 (167)
Q Consensus 89 ~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~~~~~~~~r~~~ 165 (167)
+++...|+ +||.|..+.+..+ ..-..+|-+||.|..+++|++|++.||+..+.|++|...+. +....+..-+++|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~-pvT~~rea~C~~~ 158 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS-PVTDFREAICGQF 158 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec-CcCchhhhhhccc
Confidence 34444555 8999998876543 44567899999999999999999999999999999999998 5566665555555
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=9e-05 Score=60.17 Aligned_cols=67 Identities=28% Similarity=0.408 Sum_probs=60.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFS-QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVEN 135 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~ 135 (167)
..-+..+|||||+||.-++.++|..+|+ -||.|..+.|-.|++-+..+|-|-|.|++..+-.+||..
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4556789999999999999999999999 699999999999876688999999999999999999983
No 105
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.83 E-value=0.00012 Score=56.73 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=66.5
Q ss_pred CCCCCCCCEEEEcCCC----CCCC-------HHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 040633 68 ESDTSSRTGIFIKGLP----ESMT-------EGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp----~~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 136 (167)
.......++|.+.|+= ...+ .++|.+-..+||.|..|.+.- ..+.|.+-|.|.+.++|+.||+.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHh
Confidence 3445567888888873 2223 245666788999999998753 235699999999999999999999
Q ss_pred CCceeCCeEEEEEEccCCCC
Q 040633 137 NGKFFYGRFILVKIAETGLS 156 (167)
Q Consensus 137 ~g~~i~g~~l~v~~a~~~~~ 156 (167)
+|..++|+.|..+....+..
T Consensus 335 ~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred cCeeecceEEEEEEeCCcce
Confidence 99999999999998876544
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.81 E-value=1.6e-05 Score=59.26 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC--------CCCc----eEEEEEeCCHHHHHHHHHHhCCce
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS--------KQPL----GSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~~----g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
....||+++||..++..-|+++|..||.|-+|.+.....+ |.++ .-|.|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6689999999999999999999999999999887654443 2222 247899999999999999999999
Q ss_pred eCCeE
Q 040633 141 FYGRF 145 (167)
Q Consensus 141 i~g~~ 145 (167)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00013 Score=59.20 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=62.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC-CC--CCce---EEEEEeCCHHHHHHHHHHhCCcee
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKL-SK--QPLG---SAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g--~~~g---~afv~f~~~~~a~~al~~l~g~~i 141 (167)
.....-.++||||+||++++|++|...|..||.+. +.+....+ -+ -.+| |+|+.|+++.....-+..+.-
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--- 328 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--- 328 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---
Confidence 34556689999999999999999999999999864 33331110 01 1345 999999999888877665443
Q ss_pred CCeEEEEEEccCCCCCCCCCCCCC
Q 040633 142 YGRFILVKIAETGLSKNRGRRTRY 165 (167)
Q Consensus 142 ~g~~l~v~~a~~~~~~~~~~r~~~ 165 (167)
+...+.++.+-+....+..+.++|
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW 352 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPW 352 (520)
T ss_pred cccceEEEEecCcccccceeEEee
Confidence 444455555544443343444444
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00028 Score=58.07 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 040633 72 SSRTGIFIKGLPESMTE------GRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GR 144 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~ 144 (167)
-....|+|.|+|.--.. .-|.++|+++|.+..+.+..+.. |..+||.|++|.+..+|+.|++.|||+.++ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45678889999964433 34567899999999998887755 459999999999999999999999999886 56
Q ss_pred EEEEEE
Q 040633 145 FILVKI 150 (167)
Q Consensus 145 ~l~v~~ 150 (167)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 109
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.63 E-value=9.1e-05 Score=58.94 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec---CCCC--CC--------ceEEEEEeCCH
Q 040633 60 GSNSSNSTESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTE---KLSK--QP--------LGSAFVWFSRK 126 (167)
Q Consensus 60 ~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~g--~~--------~g~afv~f~~~ 126 (167)
+..+-..-..+....++|.+.|||.+-.-+.|.++|..+|.|..|+|+.. ..+. .. +-+|+|+|+..
T Consensus 217 RisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 217 RISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred ecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhh
Confidence 33333334566788999999999999999999999999999999999875 2221 11 34799999999
Q ss_pred HHHHHHHHHhCCce
Q 040633 127 ESADLAVENMNGKF 140 (167)
Q Consensus 127 ~~a~~al~~l~g~~ 140 (167)
+.|.+|.+.|+...
T Consensus 297 ~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 297 EAARKARELLNPEQ 310 (484)
T ss_pred HHHHHHHHhhchhh
Confidence 99999999876544
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=0.00026 Score=58.06 Aligned_cols=63 Identities=25% Similarity=0.400 Sum_probs=52.0
Q ss_pred HHHHHhhcCCCeEEEEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 90 RVKKAFSQFGEVVQVKIVTEKL---SKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 90 ~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+++..+.+||.|..|.+.++.. ..-+.|..||+|.+.+++++|++.|+|.++.|+.+...|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3444678999999999887622 23356789999999999999999999999999999888864
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.59 E-value=0.0002 Score=56.45 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eEE--EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGE-VVQ--VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
......+|-+.+||+..+.++|.++|..|-. |.. |.++.+ .-|+..|-|||+|.+.++|..|....+....+++-|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 4444788999999999999999999998865 333 777765 348889999999999999999999988777778888
Q ss_pred EEEEc
Q 040633 147 LVKIA 151 (167)
Q Consensus 147 ~v~~a 151 (167)
.|-..
T Consensus 355 Evfp~ 359 (508)
T KOG1365|consen 355 EVFPC 359 (508)
T ss_pred EEeec
Confidence 87655
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.59 E-value=0.00028 Score=56.03 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=65.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR-FILVK 149 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~-~l~v~ 149 (167)
.++..++...|+|..+++++++..|..-|......... ++.+.++.+++++.|+|..|+..+|.+.+++. -|+|+
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 35678999999999999999999999887764443322 44568999999999999999999999998854 89999
Q ss_pred EccC
Q 040633 150 IAET 153 (167)
Q Consensus 150 ~a~~ 153 (167)
+++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9874
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00024 Score=40.71 Aligned_cols=52 Identities=25% Similarity=0.498 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHH
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAV 133 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al 133 (167)
+.|-|.|.+.+..+. +...|..||.|....+.. ...+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 457788888766644 566888999999987752 2368999999999999985
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.55 E-value=0.00057 Score=44.45 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=51.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-------CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK-------LSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR- 144 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~- 144 (167)
..+-|.|-+.|... ...+.+.|++||.|.+..-.... .......+..|.|+++.+|++||. -||..+.|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34568888999884 46688899999998766400000 001234689999999999999999 699999876
Q ss_pred EEEEEEcc
Q 040633 145 FILVKIAE 152 (167)
Q Consensus 145 ~l~v~~a~ 152 (167)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45566654
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.50 E-value=0.001 Score=45.98 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=45.1
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 90 RVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 90 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
+|.+.|..||.+.=++++.+ --.|+|.+.++|-+|+. |+|.++.|+.|+|++..+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67778899999887777654 36999999999999999 999999999999999864
No 116
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=0.00079 Score=48.21 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
........|.|.+||..-++++|++.+.+.|.++...+.++ |.+.|+|...|+.+-|+..|+...+.
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 34455678999999999999999999999999999998876 68999999999999999999987754
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.28 E-value=0.00042 Score=59.75 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY--GRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~--g~~l~ 147 (167)
.......+|+++|..+.....|...|..||.|..+.+-+ ...|+||+|++...++.|++.|-|..++ .++|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 556678999999999999999999999999999887644 3489999999999999999999999998 46899
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|.++...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9999643
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=0.0003 Score=60.28 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
....++|.|.|+.-+.++++.++.++|.+..+.++..+ .|+.+|.++|.|.++.++.++....++..+.-+.+.|..+.
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 36789999999999999999999999999999887765 49999999999999999999999888887777777888765
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
+.
T Consensus 814 p~ 815 (881)
T KOG0128|consen 814 PE 815 (881)
T ss_pred Cc
Confidence 53
No 119
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.03 E-value=0.00076 Score=55.89 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=64.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQ-FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF---YGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i---~g~~ 145 (167)
.....+.|||.||-.-+|.-+|+.++.+ .|.|....| .+.+..|||.|.+.++|.+....|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 5567899999999999999999999995 555655522 23568899999999999999999999986 4778
Q ss_pred EEEEEcc
Q 040633 146 ILVKIAE 152 (167)
Q Consensus 146 l~v~~a~ 152 (167)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888874
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.0038 Score=47.79 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCCeEEEEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 89 GRVKKAFSQFGEVVQVKIVTEKLSKQ-PLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 89 ~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
+++.+.+++||.|..|.|.....-.. -.--.||+|+..++|.+|+-.|||..++|+.+...+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46677899999999988776542221 1235799999999999999999999999998876654
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.86 E-value=0.00048 Score=53.35 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=64.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH---HhhcCCCeEEEEEeecCC--C-CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKK---AFSQFGEVVQVKIVTEKL--S-KQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~---~f~~~G~i~~~~~~~~~~--~-g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.....+||-+|+....++++.+ .|.+||.|..+.+..+.. . .....-++|.|...++|.+||...+|....|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3457789999998887776644 788999999887766441 1 122345999999999999999999999999998
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887777543
No 122
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.85 E-value=0.0098 Score=35.11 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=44.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC---CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQF---GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 136 (167)
....|+|.|+.. ++.++++.+|..| ....++.++.|. -|=|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 346799999855 6678899999988 235688888773 4789999999999999754
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.79 E-value=0.0011 Score=53.00 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=59.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEccC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK-FFYGRFILVKIAET 153 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-~i~g~~l~v~~a~~ 153 (167)
..+|++||....+..+|..+|...-....-.+.. --||+||+..+..-|.+|++.++|. ++.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541111111111 1289999999999999999999996 58899999999876
Q ss_pred CCCC
Q 040633 154 GLSK 157 (167)
Q Consensus 154 ~~~~ 157 (167)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5443
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=5.7e-05 Score=64.53 Aligned_cols=71 Identities=32% Similarity=0.401 Sum_probs=61.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
.+..++||.||+..+.+.+|...|..+|.+..+++....+.++.+|+||+.|...+++.+|+....+..++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 45678999999999999999999999999988877766778999999999999999999999965544444
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.77 E-value=0.0076 Score=37.63 Aligned_cols=54 Identities=20% Similarity=0.466 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
+..+|+ .|..|...||.++|+.||.|. |.++.+ .-|||.....+.+..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 445555 999999999999999999975 555544 469999999999999998776
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.66 E-value=0.01 Score=47.07 Aligned_cols=67 Identities=28% Similarity=0.363 Sum_probs=51.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc----CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQ----FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~----~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
.-.|-+.+||++.++.++.++|.. -|....+.+++. -.|+..|-|||.|..+++|+.||.. |...|+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG 231 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIG 231 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHh
Confidence 456667899999999999999963 234455666654 3488999999999999999999984 433343
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.09 E-value=0.011 Score=50.31 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ-VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.....+..|||..||..+++.++.++|...-.|++ +.|.+. -+++.++-|||.|..++++..|..--+-..++.+.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 45566899999999999999999999998777666 555554 4578899999999998888888875555556777888
Q ss_pred EEEc
Q 040633 148 VKIA 151 (167)
Q Consensus 148 v~~a 151 (167)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 8765
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.08 E-value=0.0091 Score=44.84 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=54.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
..|||.||...+..+.+.+.|+.||.+....++.|. -++..+-++|.|...-.+..|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999877666653 37788889999999999999998773
No 129
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.86 E-value=0.04 Score=39.85 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=45.5
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEccCCC
Q 040633 87 TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN--GKFFYGRFILVKIAETGL 155 (167)
Q Consensus 87 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~--g~~i~g~~l~v~~a~~~~ 155 (167)
....|+++|..++.+........ .+-..|.|.+.++|.+|...|+ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999877766542 2558999999999999999999 999999999999996543
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.74 E-value=0.035 Score=39.93 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-CCCe---EEEEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQ-FGEV---VQVKIVTEKLS--KQPLGSAFVWFSRKESADLAVENMNGKFFYG- 143 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~i~g- 143 (167)
.....+|.|.+||..++++++.+.+.. ++.- ..+.-..+..+ .....-|||.|.+.+++...+..++|+.+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999887776 6655 23331122111 1234569999999999999999999977542
Q ss_pred ----eEEEEEEcc
Q 040633 144 ----RFILVKIAE 152 (167)
Q Consensus 144 ----~~l~v~~a~ 152 (167)
.+..|++|-
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 256777773
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.64 E-value=0.003 Score=54.71 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=69.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.+....+.+||+|||+..+++.+|+..|..+|.+.+|.|-.... +..-.|+||.|.+...+-.|+..+.+..|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 44566789999999999999999999999999999998866532 33446899999999999999999999888766666
Q ss_pred EEEcc
Q 040633 148 VKIAE 152 (167)
Q Consensus 148 v~~a~ 152 (167)
+.+..
T Consensus 445 ~glG~ 449 (975)
T KOG0112|consen 445 IGLGQ 449 (975)
T ss_pred ccccc
Confidence 66663
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.61 E-value=0.16 Score=35.04 Aligned_cols=77 Identities=22% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCCCCEEEEcCCCCCCCH-HHHH---HHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTE-GRVK---KAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~-~~l~---~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.+.+-.+|.|.-|..++.. +|++ ..++.||.|..|-+. ++.-|.|.|.+..+|-.|+..++. ..-|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 4566778889888877765 3444 456789999887654 346699999999999999998885 666788
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
+++.|-..-
T Consensus 154 ~qCsWqqrF 162 (166)
T PF15023_consen 154 FQCSWQQRF 162 (166)
T ss_pred EEeeccccc
Confidence 898887543
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.031 Score=46.27 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhh----------------------------cCCCeEEEEEeecCCCCCCceEEEEEe
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFS----------------------------QFGEVVQVKIVTEKLSKQPLGSAFVWF 123 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~----------------------------~~G~i~~~~~~~~~~~g~~~g~afv~f 123 (167)
....++-|+|+|...+..+|.++.. ..|.-..+.++.|-.+..+.|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 3455666677776666655555432 245556677777777778899999999
Q ss_pred CCHHHHHHHHHHhCCceeC----CeEEEEEEccC
Q 040633 124 SRKESADLAVENMNGKFFY----GRFILVKIAET 153 (167)
Q Consensus 124 ~~~~~a~~al~~l~g~~i~----g~~l~v~~a~~ 153 (167)
.+.+++.++.+..||..+. .+.+.+.||+-
T Consensus 439 ~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred cCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 9999999999999998753 55677777753
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.53 E-value=0.36 Score=31.92 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
....+.+...|..++.++|..+...+- .|..++++++. ..++-.+.+.|.+.++|+.-.+.+||..+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444455666666667766655554 46778888763 2367789999999999999999999988753
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.29 E-value=0.045 Score=43.64 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK---LSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..|-|.||...++.++++-+|.-.|.|..+.+...- ......--|||.|.+...+..|-. |.+..+-++-|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 378999999999999999999999999998876422 113345679999999999999987 555555555554443
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.54 Score=36.45 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=49.9
Q ss_pred CCCCC--CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 69 SDTSS--RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 69 ~~~~~--~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
++..+ ..=|-|-+.|..-. ..|..+|.+||.|.+.... ..-.+-+|.|.+.-+|++||. .||..|+|..
T Consensus 190 e~~~d~~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 190 EEEADAADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ccccccccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34444 44455557766544 4567789999999776443 223688999999999999999 6999888763
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.23 E-value=0.14 Score=31.17 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHhhcCCCe-----EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 81 GLPESMTEGRVKKAFSQFGEV-----VQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 81 nLp~~~~~~~l~~~f~~~G~i-----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
+--..++..+|..++...+.+ -.+.+.. .|+||+... +.++.++..|++..+.|++++|+.|
T Consensus 8 Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 8 GRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 344567788888888876544 3555532 588998864 5889999999999999999999875
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.99 E-value=0.24 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 85 SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 85 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.++-++++..+..|+-.. +..++ ..-||.|.+.++|++|....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR------TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC------CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456688999999987532 22332 23599999999999999999999988887765
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.77 E-value=0.077 Score=44.15 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=57.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc--CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc--eeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQ--FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK--FFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~i~g~~ 145 (167)
.....|.|.+.-||..+..++++.+|.. +-.+..|.+..+.+ =||+|++..||+.|..-|... .|.|++
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 4455778888999999999999999985 67788888876543 499999999999998866542 367776
Q ss_pred EEEEE
Q 040633 146 ILVKI 150 (167)
Q Consensus 146 l~v~~ 150 (167)
|..+.
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 55433
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.75 E-value=0.056 Score=45.69 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=63.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+..+|||+|+-..+..+-++.+...+|.|..++.. .|||..|....-..+|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 345567889999999999999999999999998766432 38999999999999999999989999988877
Q ss_pred EEc
Q 040633 149 KIA 151 (167)
Q Consensus 149 ~~a 151 (167)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 764
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.63 E-value=0.12 Score=45.03 Aligned_cols=76 Identities=25% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF--YGRFILVKIA 151 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i--~g~~l~v~~a 151 (167)
..+.++.|.+-..+-..|.-+|..||.+......++- ..|.|.|.+.+.|-.|++.|+|.++ -|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4566777888888889999999999999998876654 5799999999999999999999885 4888999999
Q ss_pred cCCC
Q 040633 152 ETGL 155 (167)
Q Consensus 152 ~~~~ 155 (167)
+.-+
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 7543
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.16 E-value=0.062 Score=41.61 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=63.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
....++|++++.+.+.+.+...++..+|......+.........++++++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45889999999999999988889999998777766665566789999999999999999999954434555555444444
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.99 E-value=0.072 Score=43.46 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCCCCH-HHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 74 RTGIFIKGLPESMTE-GRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.+.+-+.-.|+.... .+|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|-. .++..|+|+.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 444445555555544 688899999999999987554 2568999999999977766 68999999999999987
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
+.
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 63
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.68 E-value=1 Score=36.76 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
..+..|+|-.+|-.++-.||..++..+- .|..++++++. --++-...|.|.+.++|...-+.+||..+..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3389999999999999999999988654 58899999853 2245568999999999999999999988763
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=2.8 Score=33.93 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=50.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGE-VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVEN 135 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~ 135 (167)
+..-.+.|-|.++|.....++|...|+.|+. -.+|+++-+ ..+|..|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4445788999999999999999999999875 577888866 5799999999999999984
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.71 E-value=0.093 Score=41.92 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
..+++|++|+..+...++.++|..+|.+....+.. +-...+|.+.|........|++ ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 37899999999999999999999999988776643 3344677899999889999988 6777665
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.95 E-value=9 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCCCceEEEEEeCC-------HHHHHHHHHHhC
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEV-VQVKIVTEKLSKQPLGSAFVWFSR-------KESADLAVENMN 137 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~-------~~~a~~al~~l~ 137 (167)
.-..-|+++||+.++.-.+|+..+.+.|.+ ..+.+ ...+|-||+.|.+ ..+.++++..++
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 345669999999999999999999987753 33333 2245779999965 345555554443
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.77 E-value=19 Score=30.78 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcC----CCeEEEEEeecCC----------CCC---------------------
Q 040633 71 TSSRTGIFIKGLPES-MTEGRVKKAFSQF----GEVVQVKIVTEKL----------SKQ--------------------- 114 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~----G~i~~~~~~~~~~----------~g~--------------------- 114 (167)
....++|-|.|+.|+ +...+|..+|..| |.|..|.|..... .|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999985 4557888888754 5788887743111 011
Q ss_pred ----------------CceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEc
Q 040633 115 ----------------PLGSAFVWFSRKESADLAVENMNGKFFY--GRFILVKIA 151 (167)
Q Consensus 115 ----------------~~g~afv~f~~~~~a~~al~~l~g~~i~--g~~l~v~~a 151 (167)
..-||.|+|.+.+.|...-+.++|..+. +..|-+++-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1238999999999999999999999987 445555444
No 149
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=66.19 E-value=10 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~ 134 (167)
.........+++++++..++..++...|..+|.+....+.............++.+.....+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3456668899999999999999999999999999777766554333333444444444444444443
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=65.37 E-value=1.4 Score=32.81 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCCCCCEEEEcC----CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 69 SDTSSRTGIFIKG----LPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 69 ~~~~~~~~l~V~n----Lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
.+.....+++.|+ |...++++.+...|...|.+..+++..+++ |+++.++|+.+-.....-.++...++...
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3445567788888 888999999999999999999999888765 88999999999877777777777666553
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=64.55 E-value=21 Score=21.36 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 89 GRVKKAFSQFGE-VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 89 ~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
++|.+.|...|- +..+.-+....++.....-||+.....+... .++-..+.+..++|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 467777777674 6677666655556677778888876554333 3444567788888877654
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=61.13 E-value=21 Score=21.50 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 89 GRVKKAFSQFGE-VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 89 ~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.+|.+.|...|- +..+.-+....++.....-+|+.....+... .|+-..++|.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 467788888774 7777777766666667777888765443333 344456778888877653
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.72 E-value=13 Score=24.78 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=22.2
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCC
Q 040633 87 TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSR 125 (167)
Q Consensus 87 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 125 (167)
+.++|.+.|..|..+. ++...+. ....|++.|.|..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECC
Confidence 4588999999998875 5455544 3567999999975
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.96 E-value=13 Score=26.95 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=48.8
Q ss_pred CEEEEcCCCCCCCHH-----HHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q 040633 75 TGIFIKGLPESMTEG-----RVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR-FILV 148 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~-----~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~-~l~v 148 (167)
..+.+.+++..+..+ ....+|.+|......++.+ +.+..-|.|.+.+.|..|.-.+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 445566665443332 2233555555544444433 235677889999999999999999999988 7887
Q ss_pred EEccCC
Q 040633 149 KIAETG 154 (167)
Q Consensus 149 ~~a~~~ 154 (167)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777643
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.64 E-value=35 Score=20.08 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCCeEEEEE
Q 040633 89 GRVKKAFSQFGEVVQVKI 106 (167)
Q Consensus 89 ~~l~~~f~~~G~i~~~~~ 106 (167)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876554
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=51.09 E-value=0.54 Score=38.17 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEee-cCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVT-EKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~-~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
...+.+-+.|+|.-...+.|..++..||.+..+..+. +.. ....-|+|...+.++.||..|+|..+.+.-++|.|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 3456788999999999999999999999998876543 222 12345678899999999999999999988888877
Q ss_pred c
Q 040633 151 A 151 (167)
Q Consensus 151 a 151 (167)
-
T Consensus 154 i 154 (584)
T KOG2193|consen 154 I 154 (584)
T ss_pred C
Confidence 5
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.20 E-value=11 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.530 Sum_probs=21.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhh
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFS 96 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~ 96 (167)
....++|.|.|||..+.+++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34568899999999999999987643
No 158
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.01 E-value=58 Score=23.66 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeecCCCC--CCceEEEEEeCCHHHHHHHHHH
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQF-GEVVQVKIVTEKLSK--QPLGSAFVWFSRKESADLAVEN 135 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~al~~ 135 (167)
.+++|.. .+++.|.++..+. |.+..+.+-... .+ ..+|-.||+|...+.|.++++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4556654 6677777766643 578888765542 23 5678899999999999998874
No 159
>PRK11901 hypothetical protein; Reviewed
Probab=45.77 E-value=54 Score=26.04 Aligned_cols=64 Identities=8% Similarity=0.053 Sum_probs=39.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCC-ceEEEEEeCCHHHHHHHHHHhCC
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQP-LGSAFVWFSRKESADLAVENMNG 138 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~-~g~afv~f~~~~~a~~al~~l~g 138 (167)
.....+|-+.. ...++.|..+..+++. ..+.+.....+|+. ...-|-.|.+.++|++|+..|..
T Consensus 242 p~~~YTLQL~A---as~~~~L~~f~~~~~L-~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSS---ASRSDTLNAYAKKQNL-SHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeec---CCCHHHHHHHHHHcCc-CceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 34455555554 3457778888777753 44444443333432 23455578899999999998874
No 160
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.67 E-value=48 Score=20.51 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 114 QPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 114 ~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
..+||-||+=.+..+...|++.+.+...
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccceee
Confidence 3789999999999999999998776543
No 161
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.05 E-value=1.3e+02 Score=26.32 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=50.4
Q ss_pred CEEEEc-CCCCCCCHHHHHHHhhcCCCeE-----EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 75 TGIFIK-GLPESMTEGRVKKAFSQFGEVV-----QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 75 ~~l~V~-nLp~~~~~~~l~~~f~~~G~i~-----~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
..+||. +-...++..+|..++..-+.|. .++|. ..|.||+.. ...++..+..|++..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 445553 4456777888888877655543 33332 257899885 56689999999999999999999
Q ss_pred EEcc
Q 040633 149 KIAE 152 (167)
Q Consensus 149 ~~a~ 152 (167)
+.++
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.53 E-value=53 Score=25.68 Aligned_cols=81 Identities=9% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-------CCCCCceEEEEEeCCHHHHHH----HHHHhCCc-
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK-------LSKQPLGSAFVWFSRKESADL----AVENMNGK- 139 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~g~~~g~afv~f~~~~~a~~----al~~l~g~- 139 (167)
-..+.|...|+..+++-..+...|-+||.|+.+.++.+. +..+......+.|-+.+.+-. .++.|...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999999998754 112334567788877665432 23333322
Q ss_pred -eeCCeEEEEEEcc
Q 040633 140 -FFYGRFILVKIAE 152 (167)
Q Consensus 140 -~i~g~~l~v~~a~ 152 (167)
.+....|.+.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 2556677777764
No 163
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=41.57 E-value=6.4 Score=31.26 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 040633 88 EGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK 139 (167)
Q Consensus 88 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 139 (167)
...+.+.+.+.|.+..-.+.+.- +.|.+||..-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 45678888888987655544432 3477899999999999999999875
No 164
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=40.96 E-value=3.4 Score=34.80 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR 144 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~ 144 (167)
+....+.+|+.|++..++-.+|..++..+-.+.++.+.....-.+...++.|.|+---....|+..||+..+...
T Consensus 227 n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 227 NTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 345678999999999999999999999987777666554433334556788999877777777777887665443
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=40.58 E-value=73 Score=20.04 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=31.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFS 124 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~ 124 (167)
.-||||++...+.+.-...+.+..+.-.-+-+-.+ . .-.||.|-...
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~--neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-N--NEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-C--CCCCEEEEEeC
Confidence 45999999999988766666665555444433332 2 26688888773
No 166
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.33 E-value=67 Score=27.04 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=43.8
Q ss_pred EEcCCCCCCC---HHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 78 FIKGLPESMT---EGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 78 ~V~nLp~~~~---~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
+||||+.--. ...+.++=++||.+-.+++-.. -.|..++.+.|+.|+. -||..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4677765433 3566667778999987777322 4788899999999999 47888888875
No 167
>PRK10905 cell division protein DamX; Validated
Probab=39.30 E-value=83 Score=24.98 Aligned_cols=63 Identities=14% Similarity=-0.016 Sum_probs=38.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHhCC
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ-PLGSAFVWFSRKESADLAVENMNG 138 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~g 138 (167)
....+|-|+.+. +.+.|.++..+.|.-... +.....+|+ -.-.-+-.|.+.++|++|+..|..
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL~~y~-vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENLKNYV-VYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCCCceE-EEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 445666666554 446677777776542222 222223343 233456678999999999998874
No 168
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.47 E-value=1.1e+02 Score=19.15 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=39.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 040633 77 IFIKGLPESMTEGRVKKAFSQ-FGE-VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVEN 135 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~-~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~ 135 (167)
.|+--++...+..++++.++. ||. |..|....-. ....-|||.+...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 444456889999999999987 664 6666554432 2345699999988887776543
No 169
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.78 E-value=5 Score=32.95 Aligned_cols=77 Identities=4% Similarity=-0.138 Sum_probs=56.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...|+..+|-..++.++.-.|+-||.|..+.+...-+.|.....+|+.... .++..+|..+-...+.|..+++.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 345667788888999999999999999887665544445566677777653 56777777666667778888888875
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.74 E-value=81 Score=20.36 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSR 125 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 125 (167)
..-||||++...+.+.-...+-+.++.-.-+-+-.+ ..-.||.|-.+.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 355999999988887755555555655433333222 2234999988865
No 171
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=35.04 E-value=61 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=21.1
Q ss_pred CCceeCCeEEEEEEccCCCCCCCCCCCCCCC
Q 040633 137 NGKFFYGRFILVKIAETGLSKNRGRRTRYKF 167 (167)
Q Consensus 137 ~g~~i~g~~l~v~~a~~~~~~~~~~r~~~~~ 167 (167)
++..+.+..++|.+.. ...++++|+.|.|
T Consensus 74 ~~~~la~~~v~V~~~~--~k~Rrr~r~pWsL 102 (102)
T PF11456_consen 74 TGQPLAQVKVKVTWVS--PKVRRRRRNPWSL 102 (102)
T ss_pred CCcEEEEEEEEEEEec--cCcCCccCCCCCC
Confidence 4556888899999986 4455566788875
No 172
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=33.08 E-value=26 Score=29.61 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=36.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q 040633 115 PLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETGLSK 157 (167)
Q Consensus 115 ~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~~~~ 157 (167)
...++++.|++...+.+|+..++|..+.+..+.+..+......
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 4579999999999999999999999999988888887655443
No 173
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=32.50 E-value=21 Score=21.38 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=15.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH
Q 040633 72 SSRTGIFIKGLPESMTEGRVK 92 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~ 92 (167)
..+.++|||++|..|-.+.=.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~ 45 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRK 45 (67)
T ss_pred HcCceEEECCCChHHHHcCcc
Confidence 346889999999988765433
No 174
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.76 E-value=23 Score=28.90 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCCEEEEcCCCCCCCHH--------HHHHHhhc--CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 040633 72 SSRTGIFIKGLPESMTEG--------RVKKAFSQ--FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~ 134 (167)
...+.+|+.+.......+ ++..+|.. .+.+..+.+-++..+..++|-.|++|...+.+++.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345667777777655555 88888988 5667777776666567788889999999999999974
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=72 Score=24.50 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=22.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCe
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEV 101 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i 101 (167)
.....|+|||+.++-.-+..+++..-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4567799999999999999988766444
No 176
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.03 E-value=3e+02 Score=23.23 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFS----QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~----~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
+..+-++.-..+....+|..+|. .+|.|.++.+...+. .......++.|.+.+++..++..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 34444543332333456777665 466777776655443 2345677889999999999988754
No 177
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.14 E-value=1.1e+02 Score=24.80 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGE-VVQVKIVTEKLS--KQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
.....|.|.+||...++.++.+.+..+-. +....+.....+ ..-.+.+||.|...++...-...++|+.+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34567888999999999988887666432 222222211110 12257799999999998888888888764
No 178
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.09 E-value=70 Score=24.91 Aligned_cols=38 Identities=34% Similarity=0.582 Sum_probs=28.8
Q ss_pred CCCCCCEEEEcCCCCC------------CCHHHHHHHhhcCCCeEEEEEe
Q 040633 70 DTSSRTGIFIKGLPES------------MTEGRVKKAFSQFGEVVQVKIV 107 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~------------~~~~~l~~~f~~~G~i~~~~~~ 107 (167)
+.....+||+.+||-. .+++-|+..|+.||.|..|.++
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4445678888888742 3567899999999999988764
No 179
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.09 E-value=65 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=10.3
Q ss_pred CCceEEEEEeCC
Q 040633 114 QPLGSAFVWFSR 125 (167)
Q Consensus 114 ~~~g~afv~f~~ 125 (167)
..|.|+||+|++
T Consensus 107 ~~RPY~FieFD~ 118 (216)
T KOG0862|consen 107 ASRPYAFIEFDT 118 (216)
T ss_pred cCCCeeEEehhH
Confidence 578999999975
No 180
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.33 E-value=57 Score=16.95 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhcCC
Q 040633 84 ESMTEGRVKKAFSQFG 99 (167)
Q Consensus 84 ~~~~~~~l~~~f~~~G 99 (167)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998764
No 181
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.29 E-value=2.3e+02 Score=19.83 Aligned_cols=47 Identities=13% Similarity=0.306 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 81 GLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 81 nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
.|+..+..+-|.++.+..|.|.... -.| -.+.|.+.+...+|++.+-
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 5888999999999999999987765 222 3667889999999998653
No 182
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.35 E-value=1.9e+02 Score=21.22 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=35.8
Q ss_pred CHHHHHHHhhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 87 TEGRVKKAFSQFGE---VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 87 ~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
+.+++.+...+.|. |...++. ..|++++.+...-.+.++|..+...|=|..+.
T Consensus 26 s~eea~~~~~~l~~~~~VvKaQvl---~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 26 SPEEAREAAKELGGKPLVVKAQVL---AGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SHHHHHHHHHHHTTSSEEEEE-SS---SSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CHHHHHHHHHHhCCCcEEEEEeEe---ecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 55777777776654 4444443 23566665555567899999999999988876
No 183
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.33 E-value=1.1e+02 Score=18.06 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=20.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 117 GSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 117 g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
.+.+|.|.+..+|-+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46799999999998888877765443
No 184
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.92 E-value=1.3e+02 Score=16.38 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=21.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCe
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEV 101 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i 101 (167)
..+++.+........+|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 457777766578889999999998873
No 185
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.29 E-value=89 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=21.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhh
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFS 96 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~ 96 (167)
.....+.|||||+.++..-|.+++.
T Consensus 95 ~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred cCCceEEEEEecccchHHHHHHHhh
Confidence 3467788999999999999998887
No 186
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.26 E-value=83 Score=23.89 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQV 104 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~ 104 (167)
.......++|+-|+|...+++.|..+..+.|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455667899999999999999999999998865543
No 187
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.63 E-value=1.1e+02 Score=23.60 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCCCEEEEcCCCCCCCHHH-H--HHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 72 SSRTGIFIKGLPESMTEGR-V--KKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~-l--~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
+.-...+++++-..+..+- | ...|..+-.+...+++.+. .+..++++|+.|........+-..-++.+++-..++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 4455666666655555543 2 5667777777777777664 377889999999988877777776666666665543
No 188
>PHA01632 hypothetical protein
Probab=21.45 E-value=1e+02 Score=17.67 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=16.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 040633 77 IFIKGLPESMTEGRVKKAFSQ 97 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~ 97 (167)
+.|..+|..-++++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345689999999999987543
No 189
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.37 E-value=62 Score=19.87 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=23.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeE
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVV 102 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~ 102 (167)
++--+.||=.+++...|+.+|+.-|..+
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 4445678888999999999999999753
No 190
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.06 E-value=2.5e+02 Score=18.18 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhh-cCCCeEEEEEee----cCCCCCCceEEEEEeCCHHHHHH
Q 040633 85 SMTEGRVKKAFS-QFGEVVQVKIVT----EKLSKQPLGSAFVWFSRKESADL 131 (167)
Q Consensus 85 ~~~~~~l~~~f~-~~G~i~~~~~~~----~~~~g~~~g~afv~f~~~~~a~~ 131 (167)
..+..+|++-+. .|+.=.+..++. .-..|++.|||.| |++.+.|..
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 455667766554 465432333332 2233556777776 666665544
No 191
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.31 E-value=2.3e+02 Score=17.84 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=27.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCCceEEEEEeCC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQ-FGEVVQVKIVTEKLSKQPLGSAFVWFSR 125 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~ 125 (167)
..-||||++...+.+.-...+-+. .+.-. +-+.... ..-.||.|-.+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~-avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGS-LVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcc-EEEEEeC--CCCCCcEEEecCC
Confidence 355999999988887644444444 33322 2223221 2245788877754
No 192
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.03 E-value=3e+02 Score=18.84 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhh-cCC-CeEEEEE----eecCCCCCCceEEEEEeCCHHHHHH
Q 040633 85 SMTEGRVKKAFS-QFG-EVVQVKI----VTEKLSKQPLGSAFVWFSRKESADL 131 (167)
Q Consensus 85 ~~~~~~l~~~f~-~~G-~i~~~~~----~~~~~~g~~~g~afv~f~~~~~a~~ 131 (167)
..+..+|++-+. .|+ .=.++.+ ...-..|.+.|||.| |++.+.+..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 456677777665 366 2222222 222234566777777 556555443
Done!