Query 040633
Match_columns 167
No_of_seqs 152 out of 2092
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.1E-24 1.1E-28 139.6 11.9 83 71-153 16-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 5.4E-23 1.9E-27 136.2 10.5 83 72-154 4-86 (110)
3 2cq0_A Eukaryotic translation 99.9 5.3E-22 1.8E-26 129.6 13.0 90 69-158 10-99 (103)
4 2lxi_A RNA-binding protein 10; 99.9 3.3E-23 1.1E-27 132.7 6.9 84 74-157 1-86 (91)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-22 1.2E-26 126.5 11.4 83 72-154 4-86 (87)
6 2dgo_A Cytotoxic granule-assoc 99.9 1.1E-21 3.8E-26 130.6 14.1 91 68-158 9-99 (115)
7 2dnz_A Probable RNA-binding pr 99.9 6.5E-22 2.2E-26 127.3 12.5 89 72-160 3-91 (95)
8 2dgs_A DAZ-associated protein 99.9 7.3E-22 2.5E-26 128.1 12.7 91 69-160 5-95 (99)
9 2dnm_A SRP46 splicing factor; 99.9 3.5E-22 1.2E-26 130.5 11.0 92 68-159 7-98 (103)
10 1x5u_A Splicing factor 3B subu 99.9 6.2E-22 2.1E-26 129.7 12.3 92 68-159 9-100 (105)
11 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.4E-22 1.5E-26 129.8 11.3 91 70-160 8-98 (102)
12 2do4_A Squamous cell carcinoma 99.9 1.2E-21 4.1E-26 127.3 13.4 88 69-157 12-99 (100)
13 3md1_A Nuclear and cytoplasmic 99.9 8.2E-22 2.8E-26 123.7 12.1 81 75-155 2-82 (83)
14 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-21 4.1E-26 130.4 13.4 91 69-159 20-110 (115)
15 1x5t_A Splicing factor 3B subu 99.9 3.8E-22 1.3E-26 128.6 10.6 89 72-160 3-92 (96)
16 1x5s_A Cold-inducible RNA-bind 99.9 5.9E-22 2E-26 129.1 11.3 92 69-160 7-98 (102)
17 1whw_A Hypothetical protein ri 99.9 1.1E-21 3.8E-26 127.1 12.4 89 70-158 4-92 (99)
18 1wi8_A EIF-4B, eukaryotic tran 99.9 1E-21 3.6E-26 128.5 12.1 92 69-162 10-102 (104)
19 1x4h_A RNA-binding protein 28; 99.9 1.5E-21 5.1E-26 129.0 13.0 92 69-160 10-107 (111)
20 2fy1_A RNA-binding motif prote 99.9 1E-21 3.6E-26 131.1 12.1 87 70-157 3-89 (116)
21 1p27_B RNA-binding protein 8A; 99.9 8.5E-22 2.9E-26 129.2 11.3 87 69-155 18-104 (106)
22 2d9p_A Polyadenylate-binding p 99.9 2.2E-21 7.4E-26 126.7 13.1 90 68-159 9-98 (103)
23 2cph_A RNA binding motif prote 99.9 1.5E-21 5.3E-26 128.1 12.5 92 68-159 9-102 (107)
24 2dng_A Eukaryotic translation 99.9 2.6E-21 8.8E-26 126.4 13.4 89 69-159 10-98 (103)
25 1u6f_A Tcubp1, RNA-binding pro 99.9 4.8E-21 1.6E-25 131.5 15.4 90 69-158 37-126 (139)
26 2cqc_A Arginine/serine-rich sp 99.9 2.2E-21 7.5E-26 124.7 12.6 85 69-153 10-94 (95)
27 4f25_A Polyadenylate-binding p 99.9 1E-21 3.5E-26 130.9 11.3 83 73-157 4-86 (115)
28 1oo0_B CG8781-PA, drosophila Y 99.9 9.3E-22 3.2E-26 129.9 11.0 89 69-157 21-109 (110)
29 2dgp_A Bruno-like 4, RNA bindi 99.9 8.8E-22 3E-26 129.2 10.7 91 69-159 8-101 (106)
30 2jrs_A RNA-binding protein 39; 99.9 1.2E-21 4.1E-26 129.2 11.4 88 68-155 20-107 (108)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.2E-21 4E-26 123.5 10.7 82 71-152 4-85 (85)
32 2cpe_A RNA-binding protein EWS 99.9 2E-21 6.8E-26 128.9 12.3 91 69-159 10-108 (113)
33 2dnh_A Bruno-like 5, RNA bindi 99.9 3.7E-21 1.3E-25 126.0 13.4 88 70-158 11-101 (105)
34 2lkz_A RNA-binding protein 5; 99.9 3.6E-22 1.2E-26 128.8 8.3 84 70-153 5-94 (95)
35 2la6_A RNA-binding protein FUS 99.9 1.9E-21 6.5E-26 126.1 11.8 85 68-152 7-99 (99)
36 2x1f_A MRNA 3'-END-processing 99.9 1.6E-21 5.3E-26 125.9 11.3 83 74-156 2-84 (96)
37 2e5h_A Zinc finger CCHC-type a 99.9 2.1E-21 7.1E-26 124.7 11.8 84 69-152 11-94 (94)
38 3p5t_L Cleavage and polyadenyl 99.9 1.9E-22 6.5E-27 128.8 6.4 82 75-156 2-85 (90)
39 2cpf_A RNA binding motif prote 99.9 2E-21 6.7E-26 125.7 11.3 87 72-158 3-92 (98)
40 2khc_A Testis-specific RNP-typ 99.9 2.4E-21 8.3E-26 129.4 11.7 84 69-152 35-118 (118)
41 3ex7_B RNA-binding protein 8A; 99.9 1.3E-21 4.6E-26 132.2 10.2 89 69-157 17-105 (126)
42 2cqd_A RNA-binding region cont 99.9 5.8E-21 2E-25 127.3 13.1 89 68-157 11-99 (116)
43 2cq3_A RNA-binding protein 9; 99.9 1.4E-20 4.6E-25 122.9 14.4 91 68-160 9-99 (103)
44 2cqi_A Nucleolysin TIAR; RNA r 99.9 1E-20 3.6E-25 123.4 13.6 89 69-159 10-98 (103)
45 2div_A TRNA selenocysteine ass 99.9 4.2E-21 1.4E-25 124.4 11.2 85 70-154 5-94 (99)
46 2do0_A HnRNP M, heterogeneous 99.9 1.6E-20 5.5E-25 124.6 14.3 87 69-156 10-96 (114)
47 4a8x_A RNA-binding protein wit 99.9 2.7E-21 9.4E-26 122.5 10.1 83 73-155 3-86 (88)
48 1h2v_Z 20 kDa nuclear CAP bind 99.9 8E-21 2.7E-25 132.9 13.2 89 69-157 34-122 (156)
49 2cqg_A TDP-43, TAR DNA-binding 99.9 1.7E-20 5.7E-25 122.5 13.9 92 69-162 10-101 (103)
50 2kxn_B Transformer-2 protein h 99.9 2.8E-21 9.4E-26 131.4 10.4 87 69-155 41-127 (129)
51 2dh8_A DAZ-associated protein 99.9 4.1E-21 1.4E-25 125.8 10.8 90 69-159 11-100 (105)
52 3ns6_A Eukaryotic translation 99.9 7.6E-22 2.6E-26 128.4 6.6 82 73-154 5-93 (100)
53 2dhg_A TRNA selenocysteine ass 99.9 4.6E-21 1.6E-25 125.3 10.4 88 70-158 5-94 (104)
54 3s7r_A Heterogeneous nuclear r 99.9 1.1E-20 3.7E-25 119.6 11.8 82 69-151 6-87 (87)
55 2dgx_A KIAA0430 protein; RRM d 99.9 7.2E-21 2.5E-25 122.8 11.1 85 70-157 5-93 (96)
56 3n9u_C Cleavage and polyadenyl 99.9 3.8E-21 1.3E-25 134.7 10.5 83 72-154 53-137 (156)
57 2cqp_A RNA-binding protein 12; 99.9 4.5E-21 1.5E-25 124.0 10.1 86 70-155 11-96 (98)
58 1x4b_A Heterogeneous nuclear r 99.9 6.1E-21 2.1E-25 127.2 10.7 90 70-160 23-112 (116)
59 1rk8_A CG8781-PA, CG8781-PA pr 99.9 7.9E-21 2.7E-25 134.2 11.9 92 69-160 67-158 (165)
60 3ucg_A Polyadenylate-binding p 99.9 1E-20 3.5E-25 120.1 11.2 81 73-154 5-85 (89)
61 3ulh_A THO complex subunit 4; 99.9 1.4E-20 4.9E-25 123.5 12.1 83 69-152 24-106 (107)
62 2rs2_A Musashi-1, RNA-binding 99.9 7E-21 2.4E-25 125.7 10.6 89 68-157 19-107 (109)
63 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-20 4.4E-25 120.4 11.4 85 71-157 5-89 (92)
64 2dgw_A Probable RNA-binding pr 99.8 2.2E-20 7.5E-25 119.2 12.4 85 69-156 5-89 (91)
65 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-20 4E-25 132.2 11.9 90 69-158 65-154 (158)
66 2ywk_A Putative RNA-binding pr 99.8 1.1E-20 3.6E-25 121.5 10.7 84 69-153 11-94 (95)
67 2jwn_A Embryonic polyadenylate 99.8 1.4E-20 4.8E-25 126.7 11.7 85 72-157 34-118 (124)
68 1x4a_A Splicing factor, argini 99.8 3.2E-20 1.1E-24 122.4 12.8 88 69-159 17-104 (109)
69 1p1t_A Cleavage stimulation fa 99.8 2.5E-21 8.4E-26 126.5 7.4 87 71-157 5-91 (104)
70 2dis_A Unnamed protein product 99.8 1.2E-20 4E-25 124.4 10.5 88 71-158 5-96 (109)
71 2lea_A Serine/arginine-rich sp 99.8 2.5E-21 8.5E-26 132.6 7.4 92 68-159 41-132 (135)
72 1s79_A Lupus LA protein; RRM, 99.8 2E-21 6.7E-26 127.2 6.4 82 70-153 7-88 (103)
73 1x4c_A Splicing factor, argini 99.8 4.7E-20 1.6E-24 121.5 13.1 83 70-159 11-98 (108)
74 2cq4_A RNA binding motif prote 99.8 2.9E-21 9.8E-26 128.4 7.2 86 70-156 21-106 (114)
75 2m2b_A RNA-binding protein 10; 99.8 5E-21 1.7E-25 130.3 8.6 87 69-156 18-110 (131)
76 2fc8_A NCL protein; structure 99.8 3.8E-20 1.3E-24 120.5 12.3 89 69-160 10-98 (102)
77 2cpi_A CCR4-NOT transcription 99.8 2.6E-20 8.9E-25 123.3 11.5 87 70-156 11-103 (111)
78 2fc9_A NCL protein; structure 99.8 3.8E-20 1.3E-24 120.3 11.9 87 69-159 10-96 (101)
79 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-20 4.4E-25 123.2 9.6 85 70-160 12-98 (105)
80 2err_A Ataxin-2-binding protei 99.8 1.8E-20 6E-25 123.8 10.0 85 68-154 23-107 (109)
81 2kt5_A RNA and export factor-b 99.8 1E-19 3.6E-24 122.6 14.0 86 70-156 31-116 (124)
82 2ek1_A RNA-binding protein 12; 99.8 8.1E-21 2.8E-25 122.1 7.9 83 71-153 12-94 (95)
83 2cpx_A Hypothetical protein FL 99.8 8.3E-21 2.9E-25 126.2 8.1 89 69-161 20-112 (115)
84 1x5o_A RNA binding motif, sing 99.8 6.5E-20 2.2E-24 121.7 12.4 85 70-155 21-113 (114)
85 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.1E-21 1.8E-25 124.4 6.7 85 69-155 14-99 (100)
86 2cq1_A PTB-like protein L; RRM 99.8 1.2E-19 4.3E-24 118.1 13.2 86 69-160 10-97 (101)
87 1x4e_A RNA binding motif, sing 99.8 3.9E-21 1.3E-25 121.2 5.5 81 72-152 3-83 (85)
88 2mss_A Protein (musashi1); RNA 99.8 8.1E-21 2.8E-25 117.0 6.7 75 76-151 1-75 (75)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.8E-20 2.3E-24 125.6 11.8 83 69-151 58-140 (140)
90 2dnq_A RNA-binding protein 4B; 99.8 1.2E-19 4.1E-24 115.6 11.4 82 70-159 4-85 (90)
91 2dgu_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 118.2 11.8 83 70-160 7-89 (103)
92 3r27_A HnRNP L, heterogeneous 99.8 8.3E-20 2.8E-24 118.3 10.4 80 69-154 16-97 (100)
93 2jvo_A Nucleolar protein 3; nu 99.8 7.2E-20 2.5E-24 120.7 10.2 80 69-156 26-105 (108)
94 1x4d_A Matrin 3; structural ge 99.8 6.8E-20 2.3E-24 119.5 9.8 80 70-155 11-93 (102)
95 2ki2_A SS-DNA binding protein 99.8 5.1E-21 1.7E-25 121.9 4.4 81 75-156 2-82 (90)
96 1wex_A Hypothetical protein (r 99.8 1.2E-19 4.2E-24 118.7 11.0 84 69-158 10-95 (104)
97 2nlw_A Eukaryotic translation 99.8 5.9E-20 2E-24 120.4 9.4 82 70-153 11-99 (105)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 9.3E-20 3.2E-24 119.0 10.0 85 70-157 11-95 (102)
99 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-20 5.7E-25 116.0 6.1 76 75-151 1-76 (77)
100 1wg5_A Heterogeneous nuclear r 99.8 1.7E-19 5.8E-24 118.0 11.2 85 69-155 10-95 (104)
101 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-19 5.4E-24 119.1 11.1 84 70-159 21-104 (109)
102 1why_A Hypothetical protein ri 99.8 2.2E-19 7.7E-24 115.9 11.5 81 70-156 13-95 (97)
103 1fj7_A Nucleolin RBD1, protein 99.8 6.3E-21 2.2E-25 124.1 4.0 86 70-157 13-98 (101)
104 2cpy_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 122.8 8.1 84 70-155 11-95 (114)
105 2ad9_A Polypyrimidine tract-bi 99.8 1.8E-19 6.3E-24 120.4 11.2 85 70-160 27-113 (119)
106 2a3j_A U1 small nuclear ribonu 99.8 9.8E-20 3.3E-24 123.3 10.0 84 71-157 26-113 (127)
107 2dgt_A RNA-binding protein 30; 99.8 3.8E-19 1.3E-23 113.7 12.3 83 69-159 5-87 (92)
108 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-19 7.1E-24 113.2 10.7 78 69-152 7-85 (85)
109 2jvr_A Nucleolar protein 3; RN 99.8 6.1E-20 2.1E-24 121.5 8.5 80 72-155 26-106 (111)
110 2e5j_A Methenyltetrahydrofolat 99.8 2.4E-19 8.1E-24 115.8 11.0 82 69-155 14-95 (97)
111 2cpd_A Apobec-1 stimulating pr 99.8 6.4E-19 2.2E-23 114.1 13.1 84 68-159 9-94 (99)
112 2db1_A Heterogeneous nuclear r 99.8 1.2E-19 4.2E-24 121.4 9.6 83 70-154 13-98 (118)
113 2hvz_A Splicing factor, argini 99.8 7.9E-20 2.7E-24 118.8 8.4 78 75-157 1-78 (101)
114 2cpj_A Non-POU domain-containi 99.8 2.9E-19 9.9E-24 115.8 11.0 82 69-156 10-91 (99)
115 2hgl_A HNRPF protein, heteroge 99.8 1E-19 3.5E-24 124.5 9.2 84 69-154 39-125 (136)
116 1wel_A RNA-binding protein 12; 99.8 5.2E-20 1.8E-24 124.1 7.5 84 70-154 21-104 (124)
117 2lcw_A RNA-binding protein FUS 99.7 1.6E-21 5.5E-26 130.0 0.0 90 70-159 3-100 (116)
118 1fjc_A Nucleolin RBD2, protein 99.8 9.9E-20 3.4E-24 117.2 8.4 84 69-157 11-94 (96)
119 3q2s_C Cleavage and polyadenyl 99.8 6.7E-20 2.3E-24 135.9 8.6 81 73-153 67-149 (229)
120 1wf1_A RNA-binding protein RAL 99.8 4.4E-19 1.5E-23 117.1 11.4 79 70-156 23-102 (110)
121 2xnq_A Nuclear polyadenylated 99.8 5.1E-19 1.7E-23 114.4 11.2 78 69-154 17-95 (97)
122 2dnp_A RNA-binding protein 14; 99.8 5.1E-19 1.8E-23 112.6 11.1 80 70-157 5-84 (90)
123 1nu4_A U1A RNA binding domain; 99.8 1.1E-19 3.9E-24 117.1 7.9 84 70-156 4-91 (97)
124 2la4_A Nuclear and cytoplasmic 99.8 1.8E-19 6.2E-24 117.1 8.8 78 71-154 24-101 (101)
125 2krb_A Eukaryotic translation 99.8 5.7E-20 2E-24 114.9 6.1 73 74-148 1-80 (81)
126 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-19 6.3E-24 119.7 8.9 83 71-156 5-87 (115)
127 2kvi_A Nuclear polyadenylated 99.8 2E-19 6.9E-24 115.9 8.5 82 69-158 5-87 (96)
128 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-19 1.1E-23 112.1 9.0 74 73-152 6-79 (89)
129 3egn_A RNA-binding protein 40; 99.8 6.5E-20 2.2E-24 126.5 6.4 86 70-158 41-134 (143)
130 2cqh_A IGF-II mRNA-binding pro 99.8 4.3E-19 1.5E-23 113.6 9.6 83 71-160 5-89 (93)
131 2e5g_A U6 snRNA-specific termi 99.8 9.9E-19 3.4E-23 112.2 10.8 83 71-159 5-87 (94)
132 4f02_A Polyadenylate-binding p 99.8 9.5E-19 3.2E-23 128.1 12.0 84 71-154 12-95 (213)
133 1iqt_A AUF1, heterogeneous nuc 99.8 5.8E-20 2E-24 113.1 4.6 75 76-151 1-75 (75)
134 1fxl_A Paraneoplastic encephal 99.8 1.4E-18 4.9E-23 121.5 12.3 83 74-156 2-84 (167)
135 3md3_A Nuclear and cytoplasmic 99.8 2E-18 6.7E-23 120.7 13.0 85 69-153 82-166 (166)
136 2xs2_A Deleted in azoospermia- 99.8 1.6E-19 5.4E-24 117.6 6.8 84 70-156 5-88 (102)
137 2dnn_A RNA-binding protein 12; 99.8 5.7E-19 2E-23 116.5 9.3 79 72-153 14-92 (109)
138 2lmi_A GRSF-1, G-rich sequence 99.8 9.1E-20 3.1E-24 119.9 5.5 84 69-154 6-92 (107)
139 1x5p_A Negative elongation fac 99.8 4.2E-18 1.5E-22 109.9 13.0 83 69-159 10-92 (97)
140 3pgw_S U1-70K; protein-RNA com 99.8 1.5E-18 5.3E-23 139.4 13.3 87 70-156 98-184 (437)
141 1b7f_A Protein (SXL-lethal pro 99.8 1.2E-18 4.2E-23 122.2 11.1 84 73-156 2-85 (168)
142 2i2y_A Fusion protein consists 99.8 1E-18 3.4E-23 121.4 10.0 82 68-154 67-148 (150)
143 2f3j_A RNA and export factor b 99.8 1E-18 3.5E-23 124.7 9.8 84 70-154 84-167 (177)
144 1x4f_A Matrin 3; structural ge 99.8 5.8E-19 2E-23 116.7 7.9 80 71-156 22-104 (112)
145 1whx_A Hypothetical protein ri 99.8 9.2E-19 3.2E-23 115.9 8.4 77 72-154 8-84 (111)
146 3beg_B Splicing factor, argini 99.8 8.8E-19 3E-23 116.6 8.0 78 72-156 14-96 (115)
147 2e44_A Insulin-like growth fac 99.8 2E-18 6.9E-23 111.0 9.5 81 70-154 11-92 (96)
148 2qfj_A FBP-interacting repress 99.8 4.1E-18 1.4E-22 124.2 12.4 86 72-157 123-208 (216)
149 1sjr_A Polypyrimidine tract-bi 99.8 3.3E-18 1.1E-22 119.9 11.3 80 72-155 44-125 (164)
150 1l3k_A Heterogeneous nuclear r 99.8 3.7E-18 1.2E-22 122.7 11.5 89 71-160 101-189 (196)
151 2hgn_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 123.7 4.5 85 70-157 42-126 (139)
152 2yh0_A Splicing factor U2AF 65 99.8 1E-17 3.4E-22 120.6 13.9 86 71-156 111-196 (198)
153 1wg1_A KIAA1579 protein, homol 99.8 2.7E-18 9.4E-23 108.9 8.9 76 72-154 3-78 (88)
154 2g4b_A Splicing factor U2AF 65 99.8 5.8E-18 2E-22 119.3 11.4 81 71-151 91-171 (172)
155 3zzy_A Polypyrimidine tract-bi 99.8 1.1E-17 3.7E-22 113.2 12.2 79 72-155 26-107 (130)
156 4f02_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 127.8 7.7 82 73-156 102-183 (213)
157 1l3k_A Heterogeneous nuclear r 99.8 6.7E-18 2.3E-22 121.3 11.2 86 69-155 8-93 (196)
158 2cq2_A Hypothetical protein LO 99.8 3.5E-18 1.2E-22 113.1 8.8 80 72-157 23-109 (114)
159 2j8a_A Histone-lysine N-methyl 99.8 3.1E-18 1.1E-22 114.6 8.5 79 75-153 3-95 (136)
160 2hgm_A HNRPF protein, heteroge 99.8 1.4E-18 4.7E-23 117.4 6.7 81 70-153 38-120 (126)
161 2diu_A KIAA0430 protein; struc 99.8 5.3E-18 1.8E-22 107.6 9.0 75 73-157 7-87 (96)
162 2e5i_A Heterogeneous nuclear r 99.8 2.3E-17 8E-22 110.9 12.6 76 74-155 25-103 (124)
163 2dha_A FLJ20171 protein; RRM d 99.8 2.1E-18 7.1E-23 116.1 7.5 80 72-153 21-104 (123)
164 2cjk_A Nuclear polyadenylated 99.7 2.4E-18 8.1E-23 120.7 7.8 81 73-154 86-166 (167)
165 2bz2_A Negative elongation fac 99.7 7E-18 2.4E-22 113.3 9.5 82 69-158 34-115 (121)
166 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-17 9.9E-22 115.1 12.1 82 70-151 85-168 (168)
167 2dnl_A Cytoplasmic polyadenyla 99.7 6.8E-18 2.3E-22 112.1 8.1 79 71-152 5-86 (114)
168 3d2w_A TAR DNA-binding protein 99.7 1.6E-17 5.6E-22 105.6 9.5 79 69-156 6-86 (89)
169 3md3_A Nuclear and cytoplasmic 99.7 2.6E-17 9E-22 114.9 10.8 81 75-156 1-81 (166)
170 3tyt_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 120.5 10.6 78 72-154 2-80 (205)
171 2qfj_A FBP-interacting repress 99.7 1.9E-17 6.5E-22 120.6 9.9 84 72-155 26-109 (216)
172 3nmr_A Cugbp ELAV-like family 99.7 3E-17 1E-21 115.7 10.2 84 73-156 2-90 (175)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 9.4E-18 3.2E-22 106.3 6.7 81 72-159 3-83 (88)
174 1fxl_A Paraneoplastic encephal 99.7 4.9E-17 1.7E-21 113.7 11.0 81 71-151 85-167 (167)
175 3pgw_A U1-A; protein-RNA compl 99.7 6.4E-17 2.2E-21 122.7 12.2 84 70-156 5-92 (282)
176 2hzc_A Splicing factor U2AF 65 99.7 3.9E-17 1.3E-21 103.0 8.5 72 72-150 4-86 (87)
177 3nmr_A Cugbp ELAV-like family 99.7 7E-17 2.4E-21 113.8 10.7 82 70-152 91-175 (175)
178 1fje_B Nucleolin RBD12, protei 99.7 5.3E-17 1.8E-21 114.8 10.0 81 70-155 95-175 (175)
179 2pe8_A Splicing factor 45; RRM 99.7 2E-16 6.7E-21 103.6 11.7 82 72-153 6-93 (105)
180 3u1l_A PRE-mRNA-splicing facto 99.7 3.8E-17 1.3E-21 121.3 8.6 84 70-159 130-234 (240)
181 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.6E-21 114.7 11.4 81 73-155 108-188 (193)
182 2cjk_A Nuclear polyadenylated 99.7 7.1E-17 2.4E-21 113.1 8.2 80 73-154 2-81 (167)
183 2ghp_A U4/U6 snRNA-associated 99.7 1.2E-16 4.1E-21 121.7 10.1 84 70-154 206-291 (292)
184 3smz_A Protein raver-1, ribonu 99.7 4.8E-16 1.6E-20 118.0 13.1 85 72-156 93-177 (284)
185 3smz_A Protein raver-1, ribonu 99.7 2.1E-16 7.1E-21 120.0 11.0 87 70-157 180-267 (284)
186 2adc_A Polypyrimidine tract-bi 99.7 2.8E-16 9.5E-21 116.1 10.0 80 70-154 30-110 (229)
187 2dit_A HIV TAT specific factor 99.7 2.3E-15 7.7E-20 99.6 13.0 86 69-158 10-106 (112)
188 3pgw_A U1-A; protein-RNA compl 99.7 8.7E-16 3E-20 116.4 11.6 79 69-152 202-281 (282)
189 1fje_B Nucleolin RBD12, protei 99.6 5.8E-17 2E-21 114.6 3.9 87 69-157 8-94 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-16 1.2E-20 112.7 8.0 77 73-154 2-79 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 111.2 8.1 78 72-151 121-204 (205)
192 3sde_A Paraspeckle component 1 99.6 2.5E-15 8.6E-20 113.1 10.1 79 69-153 17-95 (261)
193 2ghp_A U4/U6 snRNA-associated 99.6 2.1E-15 7.2E-20 114.8 9.4 85 72-157 115-200 (292)
194 1qm9_A Polypyrimidine tract-bi 99.6 1.8E-15 6E-20 109.1 8.1 78 72-154 118-197 (198)
195 1jmt_A Splicing factor U2AF 35 99.6 5.3E-16 1.8E-20 101.4 4.8 72 79-151 20-103 (104)
196 3sde_A Paraspeckle component 1 99.6 5.6E-15 1.9E-19 111.1 11.1 83 72-155 94-180 (261)
197 3v4m_A Splicing factor U2AF 65 99.6 4.4E-15 1.5E-19 97.1 9.1 81 73-153 4-96 (105)
198 2adc_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 109.4 9.8 78 72-154 149-228 (229)
199 2g4b_A Splicing factor U2AF 65 99.6 7.8E-15 2.7E-19 103.1 9.7 76 73-155 3-89 (172)
200 3ue2_A Poly(U)-binding-splicin 99.6 1.6E-14 5.4E-19 96.4 9.9 81 73-153 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.6 1.8E-14 6E-19 103.5 10.0 75 73-154 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 8.2E-14 2.8E-18 90.2 11.8 69 84-159 27-95 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.1E-13 3.8E-18 107.7 9.0 77 70-152 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.8E-17 86.8 9.8 76 73-152 6-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 3.7E-12 1.3E-16 80.0 8.4 74 72-154 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 2E-11 6.7E-16 81.3 8.6 78 69-152 13-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 3.7E-11 1.2E-15 75.9 5.1 75 70-153 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 1.4E-10 4.7E-15 85.0 8.6 68 85-152 140-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 4.4E-08 1.5E-12 63.1 8.8 74 72-151 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.0 2.6E-05 8.8E-10 49.9 7.7 77 73-155 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.8 0.0004 1.4E-08 44.3 10.0 73 72-153 6-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.8 0.0001 3.6E-09 46.5 6.8 54 74-136 16-69 (100)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00087 3E-08 41.9 9.6 77 75-151 2-85 (91)
214 1wwh_A Nucleoporin 35, nucleop 97.6 0.00031 1E-08 46.1 7.6 73 70-150 20-93 (119)
215 3ctr_A Poly(A)-specific ribonu 97.6 0.00011 3.9E-09 46.4 4.8 54 75-137 7-60 (101)
216 2l08_A Regulator of nonsense t 96.8 0.0046 1.6E-07 39.0 6.3 80 72-151 7-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.0015 5E-08 52.7 3.4 57 72-134 51-107 (464)
218 3p3d_A Nucleoporin 53; structu 96.5 0.003 1E-07 42.0 4.2 77 74-152 7-97 (132)
219 2i2y_A Fusion protein consists 96.5 0.0012 4.2E-08 44.7 2.2 40 113-153 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.4 0.0044 1.5E-07 42.2 4.8 34 104-139 3-36 (158)
221 3d45_A Poly(A)-specific ribonu 91.8 0.52 1.8E-05 38.4 7.3 55 74-137 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 81.4 3.6 0.00012 23.9 4.9 67 77-152 3-75 (76)
223 4eyt_A Telomerase associated p 63.6 23 0.00078 21.7 7.6 58 72-137 10-67 (129)
224 1xn9_A 30S ribosomal protein S 45.7 52 0.0018 20.4 5.3 48 84-132 28-80 (101)
225 4e8u_A Putative uncharacterize 43.8 66 0.0022 22.1 5.7 37 86-125 33-71 (172)
226 1ywx_A 30S ribosomal protein S 42.6 60 0.0021 20.2 5.5 47 84-131 28-79 (102)
227 2cu1_A Mitogen-activated prote 41.2 53 0.0018 20.4 4.4 68 78-154 20-88 (103)
228 2v94_A RPS24, 30S ribosomal pr 41.0 66 0.0022 20.2 5.2 47 85-132 38-89 (107)
229 3lpe_A Putative transcription 30.1 42 0.0015 20.2 2.7 26 115-140 49-74 (92)
230 3fut_A Dimethyladenosine trans 29.0 46 0.0016 24.4 3.3 31 74-105 110-140 (271)
231 2lfv_A Protein DAMX; cell divi 34.1 12 0.00043 23.5 0.0 51 87-138 35-86 (106)
232 3uzu_A Ribosomal RNA small sub 26.5 26 0.00089 25.9 1.5 32 75-106 115-146 (279)
233 2xzm_P RPS24E; ribosome, trans 26.5 1.4E+02 0.0047 20.0 4.9 46 85-131 32-82 (149)
234 4bby_A Alkyldihydroxyacetoneph 26.4 76 0.0026 26.5 4.5 56 80-136 349-408 (658)
235 3h7h_B Transcription elongatio 25.2 53 0.0018 20.5 2.6 27 114-140 49-75 (106)
236 2g1d_A 30S ribosomal protein S 24.9 60 0.0021 20.0 2.7 46 85-131 30-80 (98)
237 1fme_A FSD-EY peptide; beta-BE 23.3 45 0.0016 14.9 1.4 12 87-98 14-25 (28)
238 2exu_A Transcription initiatio 22.6 69 0.0024 22.6 3.0 28 114-141 147-174 (200)
239 3mfb_A Uncharacterized protein 21.9 1.8E+02 0.0062 19.6 4.9 37 86-122 3-42 (157)
240 2i9x_A Putative septation prot 21.4 1.4E+02 0.0049 17.9 4.1 26 100-125 5-30 (87)
241 3tqs_A Ribosomal RNA small sub 20.1 28 0.00097 25.2 0.6 30 77-106 99-128 (255)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=139.61 Aligned_cols=83 Identities=28% Similarity=0.467 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..++++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 040633 151 AET 153 (167)
Q Consensus 151 a~~ 153 (167)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=5.4e-23 Score=136.17 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+.++|||+||++++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.3e-22 Score=129.61 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=84.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+..+.++|||+|||.++++++|+++|++||.|..+.++.++.++..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45667899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 040633 149 KIAETGLSKN 158 (167)
Q Consensus 149 ~~a~~~~~~~ 158 (167)
++++++..+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998765544
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-23 Score=132.70 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEEc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN-GKFFYGRFILVKIA 151 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~-g~~i~g~~l~v~~a 151 (167)
+++|||+|||.++++++|+++|++|| .|..++++.++.+|.++|||||+|.+.++|++|++.++ +..++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCCC
Q 040633 152 ETGLSK 157 (167)
Q Consensus 152 ~~~~~~ 157 (167)
+++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876443
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=126.49 Aligned_cols=83 Identities=27% Similarity=0.447 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+.++|||+|||.++++++|+++|++||.|..+.+..++.+|..+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.1e-21 Score=130.56 Aligned_cols=91 Identities=27% Similarity=0.439 Sum_probs=84.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
..+..+.++|||+|||..+++++|+++|.+||.|..+.++.++.++..+|||||+|.+.++|++||+.|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCCCC
Q 040633 148 VKIAETGLSKN 158 (167)
Q Consensus 148 v~~a~~~~~~~ 158 (167)
|++++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998765544
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=127.28 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=83.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|++||.|..+.+..++.+++++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 040633 152 ETGLSKNRG 160 (167)
Q Consensus 152 ~~~~~~~~~ 160 (167)
+++......
T Consensus 83 ~~~~~~~~~ 91 (95)
T 2dnz_A 83 TERLDGGSG 91 (95)
T ss_dssp SCCCCCCCC
T ss_pred ccccCCCCC
Confidence 887665543
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=7.3e-22 Score=128.09 Aligned_cols=91 Identities=32% Similarity=0.484 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++ |++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 344567999999999999999999999999999999999998889999999999999999999999 9999999999999
Q ss_pred EEccCCCCCCCC
Q 040633 149 KIAETGLSKNRG 160 (167)
Q Consensus 149 ~~a~~~~~~~~~ 160 (167)
++++++..+...
T Consensus 84 ~~a~~~~~~~~~ 95 (99)
T 2dgs_A 84 KRAEPRDSKSSG 95 (99)
T ss_dssp EECCCCCCCCCC
T ss_pred EECCCCcccCCC
Confidence 999877665443
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=130.52 Aligned_cols=92 Identities=26% Similarity=0.368 Sum_probs=84.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
..+..+.++|||+|||.++++++|+++|++||.|..+.+..++.++..+|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCCCCC
Q 040633 148 VKIAETGLSKNR 159 (167)
Q Consensus 148 v~~a~~~~~~~~ 159 (167)
|+++++......
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2dnm_A 87 VQVARYGRRDLS 98 (103)
T ss_dssp EEECSSCCSCCC
T ss_pred EEECCcCCCCCC
Confidence 999987654443
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.2e-22 Score=129.67 Aligned_cols=92 Identities=27% Similarity=0.367 Sum_probs=84.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
..+....++|||+|||.++++++|+++|++||.|..+.+..++.++..+|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCCCCC
Q 040633 148 VKIAETGLSKNR 159 (167)
Q Consensus 148 v~~a~~~~~~~~ 159 (167)
|++++++..+..
T Consensus 89 v~~a~~~~~~~~ 100 (105)
T 1x5u_A 89 VNKASAHNKNLS 100 (105)
T ss_dssp EEETTTTSCCCC
T ss_pred EEECCCCCcCCC
Confidence 999987655443
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.4e-22 Score=129.76 Aligned_cols=91 Identities=29% Similarity=0.472 Sum_probs=84.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|++||.|..+.++.++.++..+|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 040633 150 IAETGLSKNRG 160 (167)
Q Consensus 150 ~a~~~~~~~~~ 160 (167)
+++++..+...
T Consensus 88 ~a~~~~~~~~~ 98 (102)
T 2cqb_A 88 LAKPMRIKESG 98 (102)
T ss_dssp ECCCCCCCCCC
T ss_pred eCCCCCCCCCC
Confidence 99887665543
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=127.28 Aligned_cols=88 Identities=30% Similarity=0.468 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+.++|||+|||.++++++|+++|++||.|..+.+..++ +|..+|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445667899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
++++++..+
T Consensus 91 ~~a~~~~~~ 99 (100)
T 2do4_A 91 AISNSGPSS 99 (100)
T ss_dssp EECCCCSCC
T ss_pred EECCCCCCC
Confidence 999876543
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=8.2e-22 Score=123.70 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=77.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
.+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999875
Q ss_pred C
Q 040633 155 L 155 (167)
Q Consensus 155 ~ 155 (167)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=1.2e-21 Score=130.44 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=83.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+.|||..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++..+..
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99987765543
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.8e-22 Score=128.64 Aligned_cols=89 Identities=35% Similarity=0.512 Sum_probs=82.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQV-KIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
...++|||+|||.++++++|+++|++||.|..+ .++.++.+|..+|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999888899999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 040633 151 AETGLSKNRG 160 (167)
Q Consensus 151 a~~~~~~~~~ 160 (167)
++++..++..
T Consensus 83 a~~~~~~~~~ 92 (96)
T 1x5t_A 83 AFKKDSKGSG 92 (96)
T ss_dssp SCCCCCCCCC
T ss_pred ecccCCCCCC
Confidence 9887655543
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.9e-22 Score=129.13 Aligned_cols=92 Identities=28% Similarity=0.436 Sum_probs=84.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+.++|||+|||.++++++|+++|++||.|..+.++.++.++..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCC
Q 040633 149 KIAETGLSKNRG 160 (167)
Q Consensus 149 ~~a~~~~~~~~~ 160 (167)
++++++...+..
T Consensus 87 ~~a~~~~~~~~~ 98 (102)
T 1x5s_A 87 DQAGKSSDNRSG 98 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EECCCCCCCCCC
Confidence 999887665543
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=127.13 Aligned_cols=89 Identities=27% Similarity=0.431 Sum_probs=82.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...+.++|||+|||.++++++|+++|++||.|..+.+..++.++..+|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCCC
Q 040633 150 IAETGLSKN 158 (167)
Q Consensus 150 ~a~~~~~~~ 158 (167)
+++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 998765543
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=128.49 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS-KQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......++|||+|||.++++++|+++|+.|| |..+.++.++.+ |..+|||||+|.+.++|++|| .|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445679999999999999999999999999 999999998887 899999999999999999999 8999999999999
Q ss_pred EEEccCCCCCCCCCC
Q 040633 148 VKIAETGLSKNRGRR 162 (167)
Q Consensus 148 v~~a~~~~~~~~~~r 162 (167)
|++++++..+.+..+
T Consensus 88 V~~a~~~~~~~~~~~ 102 (104)
T 1wi8_A 88 VDVADQAQDKDSGPS 102 (104)
T ss_dssp EEECCCCCCCCCCCC
T ss_pred EEEccCCCCCCCCCC
Confidence 999998776665443
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-21 Score=129.01 Aligned_cols=92 Identities=26% Similarity=0.383 Sum_probs=84.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC------CceeC
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN------GKFFY 142 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~------g~~i~ 142 (167)
......++|||+|||.++++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++|++.|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445667899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeEEEEEEccCCCCCCCC
Q 040633 143 GRFILVKIAETGLSKNRG 160 (167)
Q Consensus 143 g~~l~v~~a~~~~~~~~~ 160 (167)
|+.|+|++++++....+.
T Consensus 90 g~~l~v~~a~~~~~~~~~ 107 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAASG 107 (111)
T ss_dssp SCEEEEECCCCCCCCCCC
T ss_pred CEEEEEEECCCCccCCCC
Confidence 999999999876555443
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=131.13 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
+..+.++|||+|||.++++++|+++|++||.|..+.+..++ +|..+|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
++++....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99865543
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.5e-22 Score=129.23 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
++++++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998754
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=126.69 Aligned_cols=90 Identities=28% Similarity=0.483 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.+..+ +|..+|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345567899999999999999999999999999999999987 789999999999999999999999999999999999
Q ss_pred EEEccCCCCCCC
Q 040633 148 VKIAETGLSKNR 159 (167)
Q Consensus 148 v~~a~~~~~~~~ 159 (167)
|++++++..+..
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 999988765544
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=128.15 Aligned_cols=92 Identities=21% Similarity=0.414 Sum_probs=84.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTE-KLSKQPLGSAFVWFSRKESADLAVENM-NGKFFYGRF 145 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~al~~l-~g~~i~g~~ 145 (167)
.......++|||+|||..+++++|+++|++||.|..+.++.+ +.++..+|||||+|.+.++|++|++.| ||..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999988 678999999999999999999999999 999999999
Q ss_pred EEEEEccCCCCCCC
Q 040633 146 ILVKIAETGLSKNR 159 (167)
Q Consensus 146 l~v~~a~~~~~~~~ 159 (167)
|+|++++++.....
T Consensus 89 l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 89 LVLEWADSEVTVQS 102 (107)
T ss_dssp CEEEECCCCCCCCC
T ss_pred EEEEeCCCCCCCCC
Confidence 99999987655543
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.6e-21 Score=126.38 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++|| |..+.++.++.+|.++|||||+|.+.++|++|+ .|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4456679999999999999999999999997 999999999989999999999999999999999 79999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++...+.
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dng_A 88 DIAEGRKQDKS 98 (103)
T ss_dssp EECCCCCCCCS
T ss_pred EEecCCCCCCC
Confidence 99987655543
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=4.8e-21 Score=131.50 Aligned_cols=90 Identities=23% Similarity=0.447 Sum_probs=83.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+....++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45566899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 040633 149 KIAETGLSKN 158 (167)
Q Consensus 149 ~~a~~~~~~~ 158 (167)
++++++..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765544
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=124.72 Aligned_cols=85 Identities=29% Similarity=0.420 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.+..++.++..+|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 27
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1e-21 Score=130.94 Aligned_cols=83 Identities=30% Similarity=0.525 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...+|||+|||.++++++|+++|++||.|..++++.++ +.++|||||+|.+.++|++||+.|+|..++|+.|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999885 4579999999999999999999999999999999999998
Q ss_pred CCCCC
Q 040633 153 TGLSK 157 (167)
Q Consensus 153 ~~~~~ 157 (167)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=9.3e-22 Score=129.93 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=82.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|+..|||..++|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
++++++..+
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999876543
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=8.8e-22 Score=129.16 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=83.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF---YGRF 145 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i---~g~~ 145 (167)
......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4556789999999999999999999999999999999999988999999999999999999999999999987 8999
Q ss_pred EEEEEccCCCCCCC
Q 040633 146 ILVKIAETGLSKNR 159 (167)
Q Consensus 146 l~v~~a~~~~~~~~ 159 (167)
|+|++++++..+..
T Consensus 88 l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 88 IQVKPADSESRGGS 101 (106)
T ss_dssp CEEEECCCCSCCCC
T ss_pred EEEEECCcccccCC
Confidence 99999987665543
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=129.24 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
+......++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..++|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556679999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCC
Q 040633 148 VKIAETGL 155 (167)
Q Consensus 148 v~~a~~~~ 155 (167)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=1.2e-21 Score=123.53 Aligned_cols=82 Identities=29% Similarity=0.523 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..+.++|||+|||.++++++|+++|++||.|..+.++.++.++..+|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 040633 151 AE 152 (167)
Q Consensus 151 a~ 152 (167)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=128.92 Aligned_cols=91 Identities=30% Similarity=0.420 Sum_probs=83.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV--------QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
.+....++|||+|||.++++++|+++|++||.|. .+.+..++.+|..+|||||+|.+.++|++||+.|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4566789999999999999999999999999998 69999988899999999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCCCCC
Q 040633 141 FYGRFILVKIAETGLSKNR 159 (167)
Q Consensus 141 i~g~~l~v~~a~~~~~~~~ 159 (167)
+.|+.|+|++++++.....
T Consensus 90 ~~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp ETTEECEEECSSCCCCSTT
T ss_pred cCCCEEEEEECCCCCCCCC
Confidence 9999999999987665543
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=3.7e-21 Score=125.98 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC---eEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG---RFI 146 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g---~~l 146 (167)
.....++|||+|||.++++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44568999999999999999999999999999999999986 68999999999999999999999999999988 999
Q ss_pred EEEEccCCCCCC
Q 040633 147 LVKIAETGLSKN 158 (167)
Q Consensus 147 ~v~~a~~~~~~~ 158 (167)
+|++++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998765544
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=128.81 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGE--VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK----FFYG 143 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~----~i~g 143 (167)
....-.+|||+|||..+++++|+++|++||. +..++++.++.+|.++|||||+|.+.++|++|++.|||. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456689999999999999999999999995 678999999999999999999999999999999999997 4899
Q ss_pred eEEEEEEccC
Q 040633 144 RFILVKIAET 153 (167)
Q Consensus 144 ~~l~v~~a~~ 153 (167)
++|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=126.14 Aligned_cols=85 Identities=31% Similarity=0.418 Sum_probs=79.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ--------VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK 139 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 139 (167)
.......++|||+|||.++++++|+++|++||.|.. +.+..++.+|..+|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345567899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 040633 140 FFYGRFILVKIAE 152 (167)
Q Consensus 140 ~i~g~~l~v~~a~ 152 (167)
.+.|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=1.6e-21 Score=125.88 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=79.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
.++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred CCC
Q 040633 154 GLS 156 (167)
Q Consensus 154 ~~~ 156 (167)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=124.67 Aligned_cols=84 Identities=32% Similarity=0.564 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 040633 149 KIAE 152 (167)
Q Consensus 149 ~~a~ 152 (167)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=1.9e-22 Score=128.78 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=72.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFG--EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.+|||+|||.++++++|+++|++|| .|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040633 153 TGLS 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7544
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=125.75 Aligned_cols=87 Identities=30% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKL---SKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+.++|||+|||.++++++|+++|++||.|..+.+..++. ++..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998775 5689999999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 040633 149 KIAETGLSKN 158 (167)
Q Consensus 149 ~~a~~~~~~~ 158 (167)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765544
No 40
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.4e-21 Score=129.44 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+..+.++|||+|||.++++++|+++|++||.|..+.++.++.+|+.+|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44567799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 040633 149 KIAE 152 (167)
Q Consensus 149 ~~a~ 152 (167)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 41
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.3e-21 Score=132.16 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=82.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
++++++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999765543
No 42
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=127.28 Aligned_cols=89 Identities=26% Similarity=0.442 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.++.++.+++.+|||||+|.+.++|++||+.|++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999998 89999999
Q ss_pred EEEccCCCCC
Q 040633 148 VKIAETGLSK 157 (167)
Q Consensus 148 v~~a~~~~~~ 157 (167)
|++++.....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765433
No 43
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-20 Score=122.88 Aligned_cols=91 Identities=26% Similarity=0.444 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.++.+.. ..+|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 35566789999999999999999999999999999999998753 3889999999999999999999999999999999
Q ss_pred EEEccCCCCCCCC
Q 040633 148 VKIAETGLSKNRG 160 (167)
Q Consensus 148 v~~a~~~~~~~~~ 160 (167)
|++++++......
T Consensus 87 v~~a~~~~~~~~~ 99 (103)
T 2cq3_A 87 VNNATARVMTNSG 99 (103)
T ss_dssp EEECCSSCCCCCS
T ss_pred EEEcccCCCCCCC
Confidence 9999887655443
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=123.43 Aligned_cols=89 Identities=27% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.++.++. ..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 4556789999999999999999999999999999999998754 36899999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++..++.
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99987655443
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=124.41 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE---
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV-QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF--- 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~--- 145 (167)
.....++|||+|||.++++++|+++|++||.|. .+.++.++.+|..+|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEccCC
Q 040633 146 -ILVKIAETG 154 (167)
Q Consensus 146 -l~v~~a~~~ 154 (167)
|+|+++++.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999764
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=124.62 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|.+||.|..+.++.++ +|..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 455667999999999999999999999999999999999886 5899999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
++++....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99975433
No 47
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=122.50 Aligned_cols=83 Identities=22% Similarity=0.378 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ-PLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
..++|||+|||.++++++|+++|++||.|..+.+..+..++. .+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999998877665 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 040633 152 ETGL 155 (167)
Q Consensus 152 ~~~~ 155 (167)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 48
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=8e-21 Score=132.90 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
+++++....
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999865543
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-20 Score=122.45 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++||. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 455667899999999999999999999999999999999998899999999999999999999999 478899999999
Q ss_pred EEccCCCCCCCCCC
Q 040633 149 KIAETGLSKNRGRR 162 (167)
Q Consensus 149 ~~a~~~~~~~~~~r 162 (167)
++++++....+..+
T Consensus 88 ~~a~~~~~~~~~~~ 101 (103)
T 2cqg_A 88 KLPNSKQSQDSGPS 101 (103)
T ss_dssp ECCCTTCCCCCSSC
T ss_pred EecCCCCcCCCCCC
Confidence 99988766555443
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=2.8e-21 Score=131.39 Aligned_cols=87 Identities=30% Similarity=0.416 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.++.++.+|..+|||||+|.+.++|++||+.|||..|+|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44566799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
++++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 51
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=125.77 Aligned_cols=90 Identities=27% Similarity=0.327 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++||+. ++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4556789999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 2dh8_A 90 KPCTPRGMQPS 100 (105)
T ss_dssp CCSCCSSCCTT
T ss_pred EEccCCCCCCC
Confidence 99987765544
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=7.6e-22 Score=128.45 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 040633 73 SRTGIFIKGLPE------SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG-RF 145 (167)
Q Consensus 73 ~~~~l~V~nLp~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g-~~ 145 (167)
..++|||+|||. ++++++|+++|++||.|..+.++.++.||+++|||||+|.+.++|++||+.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999763
No 53
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=125.29 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce-eCCeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQ-FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF-FYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~-i~g~~l~ 147 (167)
+....++|||+|||.++++++|+++|++ ||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||.. +.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999987 89999999999999999999999999999 9999999
Q ss_pred EEEccCCCCCC
Q 040633 148 VKIAETGLSKN 158 (167)
Q Consensus 148 v~~a~~~~~~~ 158 (167)
|++++++..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998765544
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=1.1e-20 Score=119.65 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=76.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 455678999999999999999999999999999999999998899999999999999999999997 5888999999999
Q ss_pred EEc
Q 040633 149 KIA 151 (167)
Q Consensus 149 ~~a 151 (167)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 976
No 55
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=122.83 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVK----KAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
...+.++|||+|||.++++++|+ ++|++||.|..+.++.++.+ +|||||+|.+.++|++|++.|||..++|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999988654 789999999999999999999999999999
Q ss_pred EEEEEccCCCCC
Q 040633 146 ILVKIAETGLSK 157 (167)
Q Consensus 146 l~v~~a~~~~~~ 157 (167)
|+|+++++....
T Consensus 82 l~V~~a~~~~~~ 93 (96)
T 2dgx_A 82 ILVSLATGASGP 93 (96)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 56
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=134.73 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG--EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...++|||+|||+++++++|+++|+.|| .|..+.++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99754
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=124.04 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 040633 150 IAETGL 155 (167)
Q Consensus 150 ~a~~~~ 155 (167)
+++...
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 997543
No 58
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=127.18 Aligned_cols=90 Identities=24% Similarity=0.347 Sum_probs=82.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++||+. ++..++|+.|+|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344569999999999999999999999999999999999988999999999999999999999997 9999999999999
Q ss_pred EccCCCCCCCC
Q 040633 150 IAETGLSKNRG 160 (167)
Q Consensus 150 ~a~~~~~~~~~ 160 (167)
+++++....+.
T Consensus 102 ~a~~~~~~~~~ 112 (116)
T 1x4b_A 102 RAVAREESGSG 112 (116)
T ss_dssp CCSSCCCCCCS
T ss_pred ECCCCccCCCC
Confidence 99887665544
No 59
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=7.9e-21 Score=134.18 Aligned_cols=92 Identities=20% Similarity=0.275 Sum_probs=81.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCC
Q 040633 149 KIAETGLSKNRG 160 (167)
Q Consensus 149 ~~a~~~~~~~~~ 160 (167)
.+++++..++..
T Consensus 147 ~~a~~~~~~~~~ 158 (165)
T 1rk8_A 147 DWCFVKGPKRVK 158 (165)
T ss_dssp EESEECC-----
T ss_pred EEecCCCCCCCC
Confidence 999876655433
No 60
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=1e-20 Score=120.13 Aligned_cols=81 Identities=28% Similarity=0.435 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+.++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999888999999999999999999999 899999999999999997
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.4e-20 Score=123.52 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.++.+. +|..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445678999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEcc
Q 040633 149 KIAE 152 (167)
Q Consensus 149 ~~a~ 152 (167)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 62
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=7e-21 Score=125.74 Aligned_cols=89 Identities=26% Similarity=0.325 Sum_probs=77.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.+...+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.+ +..++|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345567899999999999999999999999999999999999889999999999999999999999976 5999999999
Q ss_pred EEEccCCCCC
Q 040633 148 VKIAETGLSK 157 (167)
Q Consensus 148 v~~a~~~~~~ 157 (167)
|+++.++..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=1.3e-20 Score=120.44 Aligned_cols=85 Identities=31% Similarity=0.395 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|++||.|..+.+..+ +|..+|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999873 688999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 040633 151 AETGLSK 157 (167)
Q Consensus 151 a~~~~~~ 157 (167)
+++....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9875443
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=119.23 Aligned_cols=85 Identities=27% Similarity=0.394 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|+.| .|..+.++.+ .+|+++|||||+|.+.++|++|++ |||..++|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345667999999999999999999999999 9999999998 779999999999999999999999 9999999999999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
.++++++.
T Consensus 82 ~~a~~~~~ 89 (91)
T 2dgw_A 82 FREKSGPS 89 (91)
T ss_dssp EEESSCCC
T ss_pred EECCcCCC
Confidence 99987644
No 65
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.2e-20 Score=132.17 Aligned_cols=90 Identities=27% Similarity=0.447 Sum_probs=82.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..++|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 040633 149 KIAETGLSKN 158 (167)
Q Consensus 149 ~~a~~~~~~~ 158 (167)
+++++...+.
T Consensus 145 ~~a~~~~~~~ 154 (158)
T 2kn4_A 145 QMARYGRPPD 154 (158)
T ss_dssp EEECCSSCCC
T ss_pred EECCCCCCCC
Confidence 9998754443
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=121.54 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.+..++. |..+|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3455679999999999999999999999999999999999875 889999999999999999999999999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 67
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=1.4e-20 Score=126.75 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+.++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|+ .|||..++|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999888999999999999999999999 79999999999999999
Q ss_pred cCCCCC
Q 040633 152 ETGLSK 157 (167)
Q Consensus 152 ~~~~~~ 157 (167)
++....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 865443
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-20 Score=122.37 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=78.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.+..+ +..++||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34556799999999999999999999999999999998653 557899999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
+++++.....+
T Consensus 94 ~~a~~~~~~~~ 104 (109)
T 1x4a_A 94 EFPRSGRGTGS 104 (109)
T ss_dssp ECCCCCCCCCC
T ss_pred EEcccCCCCCC
Confidence 99987654443
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=126.54 Aligned_cols=87 Identities=31% Similarity=0.496 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 040633 151 AETGLSK 157 (167)
Q Consensus 151 a~~~~~~ 157 (167)
+++...+
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9875443
No 70
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=124.38 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEe-ecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CceeCCeEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGE-VVQVKIV-TEKLSKQPLGSAFVWFSRKESADLAVENMN--GKFFYGRFI 146 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~al~~l~--g~~i~g~~l 146 (167)
..+.++|||+|||.++++++|+++|..||. |..+.++ .++.+|..+|||||+|.+.++|++|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999988 778888999999999999999999999996 589999999
Q ss_pred EEEEccCCCCCC
Q 040633 147 LVKIAETGLSKN 158 (167)
Q Consensus 147 ~v~~a~~~~~~~ 158 (167)
+|++++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999998766543
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.5e-21 Score=132.58 Aligned_cols=92 Identities=26% Similarity=0.441 Sum_probs=83.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.++.++.+++.+|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34555678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEEccCCCCCCC
Q 040633 148 VKIAETGLSKNR 159 (167)
Q Consensus 148 v~~a~~~~~~~~ 159 (167)
|+++++......
T Consensus 121 V~~a~~~~~~~~ 132 (135)
T 2lea_A 121 VQMARYGRPPDS 132 (135)
T ss_dssp EEECCCCCCCTT
T ss_pred EEECCCCCCCcc
Confidence 999987554443
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-21 Score=127.19 Aligned_cols=82 Identities=26% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|++||.|..+.++.++. |.++|||||+|.+.++|++||. ++|..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999877 9999999999999999999999 99999999999999
Q ss_pred EccC
Q 040633 150 IAET 153 (167)
Q Consensus 150 ~a~~ 153 (167)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9865
No 73
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-20 Score=121.46 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC-----e
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG-----R 144 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g-----~ 144 (167)
.....++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++||+.|||..+.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456799999999999999999999999999999999765 899999999999999999999999999 9
Q ss_pred EEEEEEccCCCCCCC
Q 040633 145 FILVKIAETGLSKNR 159 (167)
Q Consensus 145 ~l~v~~a~~~~~~~~ 159 (167)
.|+|++++++.....
T Consensus 84 ~i~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 84 YIRVKVDGPRSPSYG 98 (108)
T ss_dssp EEEEEESSCCSCCCC
T ss_pred EEEEEeCCCCCCCCC
Confidence 999999987665443
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-21 Score=128.39 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.+|..+|||||+|.+.++|++|| .|||..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3455789999999999999999999999999999999999988999999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
+++++..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9976543
No 75
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=130.34 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE--EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc----eeC
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ--VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK----FFY 142 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~----~i~ 142 (167)
......++|||+|||+++++++|+++|++||.|.. |+++.++.+|+++|||||+|.+. +|++|+..|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999966 99999998999999999999999 999999999999 999
Q ss_pred CeEEEEEEccCCCC
Q 040633 143 GRFILVKIAETGLS 156 (167)
Q Consensus 143 g~~l~v~~a~~~~~ 156 (167)
|+.|+|+++++...
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987533
No 76
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=120.51 Aligned_cols=89 Identities=27% Similarity=0.367 Sum_probs=79.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|+.|+ .+.++.++.++..+|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4556779999999999999999999999874 5677778888999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCC
Q 040633 149 KIAETGLSKNRG 160 (167)
Q Consensus 149 ~~a~~~~~~~~~ 160 (167)
++++++..+++.
T Consensus 87 ~~a~~~~~~~~~ 98 (102)
T 2fc8_A 87 DWAKPKGEGGSG 98 (102)
T ss_dssp EECCCCCSSSCS
T ss_pred EEecCCCCCCCC
Confidence 999987666544
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=123.32 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVK---KAFSQFGEVVQVKIVTEKLSK---QPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
.....++|||+|||.++++++|+ ++|++||.|..+.+..++.++ ..+|||||+|.+.++|++||+.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999887644 566999999999999999999999999999
Q ss_pred eEEEEEEccCCCC
Q 040633 144 RFILVKIAETGLS 156 (167)
Q Consensus 144 ~~l~v~~a~~~~~ 156 (167)
+.|+|++++++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987653
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=120.33 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.| .++.+ .+++.+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355678999999999999999999999999987 45555 57889999999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++...++
T Consensus 86 ~~a~~~~~~~~ 96 (101)
T 2fc9_A 86 ELQGPRGSPNS 96 (101)
T ss_dssp EECSSCCCCCC
T ss_pred EEcCCCCCCCC
Confidence 99987654443
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=123.21 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG--KFFYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~i~g~~l~ 147 (167)
.....++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|++.|++ ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456799999999999999999999999999999999864 59999999999999999998864 789999999
Q ss_pred EEEccCCCCCCCC
Q 040633 148 VKIAETGLSKNRG 160 (167)
Q Consensus 148 v~~a~~~~~~~~~ 160 (167)
|++++++......
T Consensus 86 V~~A~~~~~~~~~ 98 (105)
T 1sjq_A 86 IQFSNHKELKTDS 98 (105)
T ss_dssp BCCCSSSSCCCTT
T ss_pred EEEcCCCCCCccc
Confidence 9999876555443
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=123.78 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.+..++ +..+|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678999999999999999999999999999999998875 45899999999999999999999999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 81
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=1e-19 Score=122.56 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|+++|++||.|..+.+..++ +|..+|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667999999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
+|.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9976543
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=8.1e-21 Score=122.11 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|..+|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred ccC
Q 040633 151 AET 153 (167)
Q Consensus 151 a~~ 153 (167)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 853
No 83
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-21 Score=126.22 Aligned_cols=89 Identities=24% Similarity=0.426 Sum_probs=77.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE----EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV----QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR 144 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~----~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~ 144 (167)
......++|||+|||.++++++|+++|.+||.|. .+.+. +|..+|||||+|.+.++|++|++.|||..+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3445679999999999999999999999999984 44443 688999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCC
Q 040633 145 FILVKIAETGLSKNRGR 161 (167)
Q Consensus 145 ~l~v~~a~~~~~~~~~~ 161 (167)
.|+|++++++..+....
T Consensus 96 ~l~v~~a~~~~~~~~~~ 112 (115)
T 2cpx_A 96 ILVIEFGKNKKQRSSGP 112 (115)
T ss_dssp BCEEEECCCCSCCCCCC
T ss_pred EEEEEEccCCCCCCCCC
Confidence 99999998876655443
No 84
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-20 Score=121.74 Aligned_cols=85 Identities=25% Similarity=0.470 Sum_probs=78.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee--------
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF-------- 141 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i-------- 141 (167)
...+.++|||+|||.++++++|+++|..||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCeEEEEEEccCCC
Q 040633 142 YGRFILVKIAETGL 155 (167)
Q Consensus 142 ~g~~l~v~~a~~~~ 155 (167)
.+++|.|+++++..
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57889999998653
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-21 Score=124.43 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEK-LSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......++|||+|||.++++++|+++|++|| |..+.+..++ .+|+++|||||+|.+.++|++|+ .|||..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456679999999999999999999999999 9999999887 58999999999999999999999 7999999999999
Q ss_pred EEEccCCC
Q 040633 148 VKIAETGL 155 (167)
Q Consensus 148 v~~a~~~~ 155 (167)
|++++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998753
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=118.11 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh--CCceeCCeEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM--NGKFFYGRFI 146 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~g~~i~g~~l 146 (167)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999988754 599999999999999999977 4678999999
Q ss_pred EEEEccCCCCCCCC
Q 040633 147 LVKIAETGLSKNRG 160 (167)
Q Consensus 147 ~v~~a~~~~~~~~~ 160 (167)
+|++++.+..+...
T Consensus 84 ~V~~a~~~~~~~~~ 97 (101)
T 2cq1_A 84 YIQYSNHKELKTSG 97 (101)
T ss_dssp EEEECSCSSCCCCC
T ss_pred EEEEcCcccCcCCC
Confidence 99999877665544
No 87
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-21 Score=121.23 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999888999999999999999999999999999999999887765
Q ss_pred c
Q 040633 152 E 152 (167)
Q Consensus 152 ~ 152 (167)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=8.1e-21 Score=116.98 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 76 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
+|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++ |+|..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999998 9999999999999875
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=125.61 Aligned_cols=83 Identities=29% Similarity=0.516 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|++||.|..+.++.++.+|..+|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44556899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 040633 149 KIA 151 (167)
Q Consensus 149 ~~a 151 (167)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=115.60 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
...+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567999999999999999999999999999999886 4899999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 040633 150 IAETGLSKNR 159 (167)
Q Consensus 150 ~a~~~~~~~~ 159 (167)
+++++.....
T Consensus 76 ~a~~~~~~~~ 85 (90)
T 2dnq_A 76 ASKNKSKASS 85 (90)
T ss_dssp CSSCCCCCCS
T ss_pred ECCCCCCCCC
Confidence 9987665543
No 91
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.4e-19 Score=118.17 Aligned_cols=83 Identities=33% Similarity=0.471 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34457899999999999999999999999999999886 3699999999999999999999999999999999
Q ss_pred EccCCCCCCCC
Q 040633 150 IAETGLSKNRG 160 (167)
Q Consensus 150 ~a~~~~~~~~~ 160 (167)
+++++..+...
T Consensus 79 ~a~~~~~~~~~ 89 (103)
T 2dgu_A 79 FAKPPDQKRKE 89 (103)
T ss_dssp ECCCCCCCCCC
T ss_pred EcCCCcccchh
Confidence 99876655433
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=118.27 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce--eCCeEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF--FYGRFI 146 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~--i~g~~l 146 (167)
....++.+|||+|||.++++++|+++|++||.|..+.++.. +|||||+|.+.++|++|++.|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999998753 5899999999999999999999875 789999
Q ss_pred EEEEccCC
Q 040633 147 LVKIAETG 154 (167)
Q Consensus 147 ~v~~a~~~ 154 (167)
+|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999764
No 93
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=7.2e-20 Score=120.67 Aligned_cols=80 Identities=31% Similarity=0.463 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455677999999999999999999999999999999887 489999999999999999999999999999999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
+++++...
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987544
No 94
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=119.45 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc--eeCCeEE
Q 040633 70 DTSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK--FFYGRFI 146 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~i~g~~l 146 (167)
...+.++|||+|||+ ++++++|+++|++||.|..+.++.++ +||||+|.+.++|++|++.||+. .+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 99999999999999999999997653 89999999999999999999864 5999999
Q ss_pred EEEEccCCC
Q 040633 147 LVKIAETGL 155 (167)
Q Consensus 147 ~v~~a~~~~ 155 (167)
+|++++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998543
No 95
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=5.1e-21 Score=121.91 Aligned_cols=81 Identities=33% Similarity=0.489 Sum_probs=74.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+ |++|+..|||..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999865
Q ss_pred CC
Q 040633 155 LS 156 (167)
Q Consensus 155 ~~ 156 (167)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=118.74 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc--eeCCeEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK--FFYGRFI 146 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~i~g~~l 146 (167)
....+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++. .+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999988753 589999999999999999988764 4899999
Q ss_pred EEEEccCCCCCC
Q 040633 147 LVKIAETGLSKN 158 (167)
Q Consensus 147 ~v~~a~~~~~~~ 158 (167)
+|++++.+..+.
T Consensus 84 ~V~~a~~~~~~~ 95 (104)
T 1wex_A 84 FFNYSTSKRITR 95 (104)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCccccC
Confidence 999998765443
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=120.42 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 70 DTSSRTGIFIKGLPESM------TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
.....++|||+|||..+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|++|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44457899999999999 789999999999999999887 4678999999999999999999999999999999
Q ss_pred e-EEEEEEccC
Q 040633 144 R-FILVKIAET 153 (167)
Q Consensus 144 ~-~l~v~~a~~ 153 (167)
+ +|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999964
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=118.97 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||+++++++|+++|+.||.+ .+.++.++ +|+++|||||+|.+.++|++||+ +|+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999955 99999987 89999999999999999999996 89999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
.+.+....
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 99765443
No 99
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=116.02 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999987
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=118.01 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ-VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......++|||+|||+++++++|+++|.+||.|.. +.++.+ .+|+++|||||+|.+.++|++||+. ++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456799999999999999999999999999987 888877 7899999999999999999999997 99999999999
Q ss_pred EEEccCCC
Q 040633 148 VKIAETGL 155 (167)
Q Consensus 148 v~~a~~~~ 155 (167)
|.++.++.
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99997644
No 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=119.05 Aligned_cols=84 Identities=23% Similarity=0.463 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999865 5899999999999999999999999999999999
Q ss_pred EccCCCCCCC
Q 040633 150 IAETGLSKNR 159 (167)
Q Consensus 150 ~a~~~~~~~~ 159 (167)
+++++.....
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4g_A 95 WGKESPDMTS 104 (109)
T ss_dssp CCCCCCSSCC
T ss_pred ecCCCCCCCC
Confidence 9987665443
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=115.87 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY--GRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~--g~~l~ 147 (167)
.....++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455689999999999999999999999999999988753 589999999999999999999999999 99999
Q ss_pred EEEccCCCC
Q 040633 148 VKIAETGLS 156 (167)
Q Consensus 148 v~~a~~~~~ 156 (167)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999988654
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-21 Score=124.06 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|++||+ |||..+.|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999877 566666778899999999999999999999 99999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99875443
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=122.83 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEV-VQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
...+.++|||+|||+++++++|+++|+.||.| ..+.|+.++ +|+.+|||||+|.+.++|++||+. |+..++|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 889999987 899999999999999999999996 999999999999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997543
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=120.37 Aligned_cols=85 Identities=22% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG--KFFYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~i~g~~l~ 147 (167)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 59999999999999999998884 679999999
Q ss_pred EEEccCCCCCCCC
Q 040633 148 VKIAETGLSKNRG 160 (167)
Q Consensus 148 v~~a~~~~~~~~~ 160 (167)
|++++++..+...
T Consensus 101 V~~a~~k~~~~~~ 113 (119)
T 2ad9_A 101 IQFSNHKELKTDS 113 (119)
T ss_dssp EEECSSSSCCCCC
T ss_pred EEEccCCCCCccc
Confidence 9999876655443
No 106
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=123.30 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVK----KAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
....++|||+|||+.+++++|+ ++|++||.|..+.+. .+++++|||||+|.+.++|+.|+..|||..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 699999999988774 357899999999999999999999999999999999
Q ss_pred EEEEccCCCCC
Q 040633 147 LVKIAETGLSK 157 (167)
Q Consensus 147 ~v~~a~~~~~~ 157 (167)
+|++++.+...
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99999876543
No 107
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=113.69 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|..+.+.. +||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4556789999999999999999999999999999998863 49999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++.....
T Consensus 77 ~~a~~~~~~~~ 87 (92)
T 2dgt_A 77 QLSTSRLRTAS 87 (92)
T ss_dssp EESSCCCSCCC
T ss_pred EEccCCCCCCC
Confidence 99987655443
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=113.16 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM-NGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l-~g~~i~g~~l~ 147 (167)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.| +|..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 44566789999999999999999999999999999999864 589999999999999999999 99999999999
Q ss_pred EEEcc
Q 040633 148 VKIAE 152 (167)
Q Consensus 148 v~~a~ 152 (167)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 109
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=6.1e-20 Score=121.51 Aligned_cols=80 Identities=24% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....+|||+|||+++++++|+++|++|| .|..+.+.. +..+|||||+|.+.++|++||+.|||..++|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 899888753 24789999999999999999999999999999999999
Q ss_pred ccCCC
Q 040633 151 AETGL 155 (167)
Q Consensus 151 a~~~~ 155 (167)
++..+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97654
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=115.80 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|++||.|. +.++.+ ..+|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445578999999999999999999999999986 566543 57799999999999999999999999999999999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
++++++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998753
No 111
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-19 Score=114.13 Aligned_cols=84 Identities=32% Similarity=0.407 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQF--GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.......++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445567999999999999999999999999 889888764 479999999999999999999999999999
Q ss_pred EEEEEccCCCCCCC
Q 040633 146 ILVKIAETGLSKNR 159 (167)
Q Consensus 146 l~v~~a~~~~~~~~ 159 (167)
|+|++++++....+
T Consensus 81 l~v~~a~~~~~~~~ 94 (99)
T 2cpd_A 81 IEVTLAKPVDKDSS 94 (99)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCCCCCC
Confidence 99999987655443
No 112
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=121.36 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGE---VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999876 9999999999999999999999 99999999999
Q ss_pred EEEEccCC
Q 040633 147 LVKIAETG 154 (167)
Q Consensus 147 ~v~~a~~~ 154 (167)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=118.82 Aligned_cols=78 Identities=27% Similarity=0.451 Sum_probs=72.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
++|||+|||.++++++|+++|++||.|..+.+..+ .+|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999875 6799999999999999999999999999999999999876
Q ss_pred CCC
Q 040633 155 LSK 157 (167)
Q Consensus 155 ~~~ 157 (167)
..+
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=115.75 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44566789999999999999999999999999999998754 589999999999999999999999999999999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
++++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987544
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=1e-19 Score=124.55 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGE---VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.+....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++||+ |||..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556799999999999999999999999999 88999999877 9999999999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
|+|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998643
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-20 Score=124.12 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||+++++++|+++|..||.|..+.++.+..+|+.+|||||+|.+.++|++||+ |||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999886666667789999999999999999999999 99999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99653
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-21 Score=130.03 Aligned_cols=90 Identities=32% Similarity=0.424 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQ--------VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
+..+.++|||+|||.++++++|+++|++||.|.. +.++.++.++..+|||||+|.+.++|++|++.|||..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 88998888899999999999999999999999999999
Q ss_pred CCeEEEEEEccCCCCCCC
Q 040633 142 YGRFILVKIAETGLSKNR 159 (167)
Q Consensus 142 ~g~~l~v~~a~~~~~~~~ 159 (167)
.|+.|+|++++++..+.+
T Consensus 83 ~g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFNR 100 (116)
Confidence 999999999987765543
No 118
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=117.24 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||..+++++|+++|+.||.|..+ ..++..+|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567999999999999999999999999988665 345789999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
++++++...
T Consensus 86 ~~a~~~~~~ 94 (96)
T 1fjc_A 86 YYTGEKGGT 94 (96)
T ss_dssp EECSSSCCC
T ss_pred EEcCCCCCC
Confidence 999876443
No 119
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=6.7e-20 Score=135.90 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFG--EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..++|||+||++++++++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 040633 151 AET 153 (167)
Q Consensus 151 a~~ 153 (167)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=4.4e-19 Score=117.05 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 70 DTSSRTGIFIKGLPES-MTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.....++|||+|||.+ +++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 3589999999999999999999999999999999
Q ss_pred EEccCCCC
Q 040633 149 KIAETGLS 156 (167)
Q Consensus 149 ~~a~~~~~ 156 (167)
+++++...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99985433
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=5.1e-19 Score=114.37 Aligned_cols=78 Identities=19% Similarity=0.454 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556789999999998 99999999999999999999883 58999999999999999999999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|++++++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999764
No 122
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=112.64 Aligned_cols=80 Identities=25% Similarity=0.444 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|++||.|..+.+.. +||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456778999999999999999999999999999998863 499999999999999999999999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
++++...+
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99876443
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.1e-19 Score=117.09 Aligned_cols=84 Identities=30% Similarity=0.490 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVK----KAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
...+.++|||+|||.++++++|+ ++|++||.|..+.+.. +|..+|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998863 3677899999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 040633 146 ILVKIAETGLS 156 (167)
Q Consensus 146 l~v~~a~~~~~ 156 (167)
|+|+++++...
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987654
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=117.10 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 469999999999999999999999999999999999
Q ss_pred ccCC
Q 040633 151 AETG 154 (167)
Q Consensus 151 a~~~ 154 (167)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9763
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=114.90 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 040633 74 RTGIFIKGLPESM------TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR-FI 146 (167)
Q Consensus 74 ~~~l~V~nLp~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~-~l 146 (167)
+++|||+|||..+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|++|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999887 46789999999999999999999999999999999 88
Q ss_pred EE
Q 040633 147 LV 148 (167)
Q Consensus 147 ~v 148 (167)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.9e-19 Score=119.70 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||..+++++|+++|++||.|..+.++.+ +..+|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999865 45689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 040633 151 AETGLS 156 (167)
Q Consensus 151 a~~~~~ 156 (167)
+++...
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986433
No 127
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-19 Score=115.95 Aligned_cols=82 Identities=18% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 69 SDTSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.+..+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456789999999998 99999999999999999999884 48999999999999999999999999999999
Q ss_pred EEEccCCCCCC
Q 040633 148 VKIAETGLSKN 158 (167)
Q Consensus 148 v~~a~~~~~~~ 158 (167)
|+++++.....
T Consensus 77 V~~a~~~~~~~ 87 (96)
T 2kvi_A 77 LEVSSSNARPQ 87 (96)
T ss_dssp EEEEECCCC--
T ss_pred EEEcCcCCCCC
Confidence 99998654443
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3.3e-19 Score=112.06 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
.+.-|||+||+..+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|++|++.||+..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457799999999999999999999999999999865 46999999999999999999999999999999999983
No 129
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=126.48 Aligned_cols=86 Identities=20% Similarity=0.395 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEE--------EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQV--------KIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~--------~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
.....++|||+|||..+++++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|++|+..|||..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999999988653 222 3588999999999999999999999999999
Q ss_pred CCeEEEEEEccCCCCCC
Q 040633 142 YGRFILVKIAETGLSKN 158 (167)
Q Consensus 142 ~g~~l~v~~a~~~~~~~ 158 (167)
.|+.|.|+++++...+.
T Consensus 118 ~g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 118 FGKPMVVQFARSARPKQ 134 (143)
T ss_dssp TTEECEEEECCCSCC--
T ss_pred CCcEEEEEECCCCCCcc
Confidence 99999999997655443
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=113.64 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGE-VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG-KFFYGRFILV 148 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g-~~i~g~~l~v 148 (167)
....++|||+|||.++++++|+++|++||. +..+.+. .+|||||+|.+.++|++|++.||| ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346689999999999999999999999999 5555542 358999999999999999999999 9999999999
Q ss_pred EEccCCCCCCCC
Q 040633 149 KIAETGLSKNRG 160 (167)
Q Consensus 149 ~~a~~~~~~~~~ 160 (167)
++++++..+.+.
T Consensus 78 ~~a~~~~~~~~~ 89 (93)
T 2cqh_A 78 DYSVSKKLRSSG 89 (93)
T ss_dssp EECCCCCCCCCS
T ss_pred EEccCccccCCC
Confidence 999887665443
No 131
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-19 Score=112.22 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|++||.|..+ +.++.+|+ ||||+|.+.++|++|++ |||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55555555 99999999999999999 999999999999999
Q ss_pred ccCCCCCCC
Q 040633 151 AETGLSKNR 159 (167)
Q Consensus 151 a~~~~~~~~ 159 (167)
+.++....+
T Consensus 79 a~~~~~~~~ 87 (94)
T 2e5g_A 79 REQKEFQSP 87 (94)
T ss_dssp SCCSCCCCC
T ss_pred CCcCCCCCC
Confidence 976554433
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=9.5e-19 Score=128.11 Aligned_cols=84 Identities=19% Similarity=0.407 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
..+.++|||+|||.++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|++||+.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 040633 151 AETG 154 (167)
Q Consensus 151 a~~~ 154 (167)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8654
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=5.8e-20 Score=113.05 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 76 GIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 76 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
+|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++ +++..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999999 5899999999999875
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.4e-18 Score=121.53 Aligned_cols=83 Identities=28% Similarity=0.481 Sum_probs=78.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAET 153 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~ 153 (167)
.++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred CCC
Q 040633 154 GLS 156 (167)
Q Consensus 154 ~~~ 156 (167)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-18 Score=120.71 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=80.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.......+|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
++|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.6e-19 Score=117.58 Aligned_cols=84 Identities=24% Similarity=0.369 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||.++++++|+++|++||.|..+.+..++ +|..+|||||+|.+.++|++|++ ++..++|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999 9999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9976543
No 137
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=116.50 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+..+|||+|||+++++++|+++|+.| .|..+.|+.++. |+++|||||+|.+.++|++|| .||+..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 446899999999999999999999999 899999998865 999999999999999999999 59999999999999988
Q ss_pred cC
Q 040633 152 ET 153 (167)
Q Consensus 152 ~~ 153 (167)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-20 Score=119.90 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGE---VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
.+....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++||+ +|+..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999998 89999998877 9999999999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 040633 146 ILVKIAETG 154 (167)
Q Consensus 146 l~v~~a~~~ 154 (167)
|+|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998753
No 139
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-18 Score=109.85 Aligned_cols=83 Identities=28% Similarity=0.413 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|+ ++++++|+++|++||.|..+.+. ..+|||||+|.+.++|++||+.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999884 35689999999999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040633 149 KIAETGLSKNR 159 (167)
Q Consensus 149 ~~a~~~~~~~~ 159 (167)
++++++.....
T Consensus 82 ~~a~~~~~~~~ 92 (97)
T 1x5p_A 82 NIARKQPMLDS 92 (97)
T ss_dssp ECCSSCCCCCS
T ss_pred EECCCCCCCCC
Confidence 99987655443
No 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.5e-18 Score=139.44 Aligned_cols=87 Identities=22% Similarity=0.409 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|.++|.+||.|..|.|+.++.+|..+|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 040633 150 IAETGLS 156 (167)
Q Consensus 150 ~a~~~~~ 156 (167)
++++...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986543
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.2e-18 Score=122.22 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
..++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040633 153 TGLS 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=1e-18 Score=121.42 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=75.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 68 ESDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 68 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.......++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345567899999999999999999999999999999999865 469999999999999999999999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|++++++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999875
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=1e-18 Score=124.72 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=116.73 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 040633 71 TSSRTGIFIKGLPES-MTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG--KFFYGRFIL 147 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~i~g~~l~ 147 (167)
....++|||+|||++ +++++|+++|++||.|..+.++. .+|||||+|.+.++|+.|++.|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 99999999999999999999864 359999999999999999998864 569999999
Q ss_pred EEEccCCCC
Q 040633 148 VKIAETGLS 156 (167)
Q Consensus 148 v~~a~~~~~ 156 (167)
|++++.+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.2e-19 Score=115.87 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|++||.|..+.+.. .++||||+|.+.++|++|++.|||..+.|+.|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998764 4589999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 146
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=8.8e-19 Score=116.64 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE-----E
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF-----I 146 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~-----l 146 (167)
...++|||+|||.++++++|+++|++||.|..+.++.+ |||||+|.+.++|++||+.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999998754 89999999999999999999999999988 8
Q ss_pred EEEEccCCCC
Q 040633 147 LVKIAETGLS 156 (167)
Q Consensus 147 ~v~~a~~~~~ 156 (167)
+|..+.+...
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 8888875543
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=111.05 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQV-KIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.....++|||+|||.++++++|+++|++||.|..+ .++.++.+ +.|||+|.+.++|++|++.|||..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 33456899999999999999999999999999999 47776654 33999999999999999999999999999999
Q ss_pred EEccCC
Q 040633 149 KIAETG 154 (167)
Q Consensus 149 ~~a~~~ 154 (167)
++++++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=4.1e-18 Score=124.17 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 040633 152 ETGLSK 157 (167)
Q Consensus 152 ~~~~~~ 157 (167)
++....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876544
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3.3e-18 Score=119.86 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG--RFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g--~~l~v~ 149 (167)
....+|||+||++.+++++|+++|++||.|.++.+...+ .+|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345679999999999999999999999999999986532 56899999999999999999999999965 999999
Q ss_pred EccCCC
Q 040633 150 IAETGL 155 (167)
Q Consensus 150 ~a~~~~ 155 (167)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=3.7e-18 Score=122.69 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||.++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|++|+.. +|..++|+.|.|++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999995 89999999999999
Q ss_pred ccCCCCCCCC
Q 040633 151 AETGLSKNRG 160 (167)
Q Consensus 151 a~~~~~~~~~ 160 (167)
+.++......
T Consensus 180 a~~k~~~~~~ 189 (196)
T 1l3k_A 180 ALSKQEMASA 189 (196)
T ss_dssp CC--------
T ss_pred cCChhHhccc
Confidence 9877665443
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.8e-19 Score=123.69 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||+++++++|+++|++|| +..+.|+.++. |+++|||||+|.+.++|++|| .+|+..++|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 66999998876 999999999999999999999 699999999999999
Q ss_pred EccCCCCC
Q 040633 150 IAETGLSK 157 (167)
Q Consensus 150 ~a~~~~~~ 157 (167)
.+.+....
T Consensus 119 ~a~~~~~~ 126 (139)
T 2hgn_A 119 LNSTTGAS 126 (139)
T ss_dssp ECCCSCC-
T ss_pred ECCCCCCC
Confidence 99865543
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1e-17 Score=120.56 Aligned_cols=86 Identities=26% Similarity=0.438 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 040633 151 AETGLS 156 (167)
Q Consensus 151 a~~~~~ 156 (167)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2.7e-18 Score=108.86 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|++| .|..+.+. +.+|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356889999999999999999999999 99988884 46799999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=5.8e-18 Score=119.28 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.....+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..++|++|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34579999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred c
Q 040633 151 A 151 (167)
Q Consensus 151 a 151 (167)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 155
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=1.1e-17 Score=113.20 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGS-AFVWFSRKESADLAVENMNGKFFYG--RFILV 148 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~g~~i~g--~~l~v 148 (167)
..--.|||+||++.+++++|+++|++||.|.++.+... .+|| |||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 44567889999999999999999999999999988764 2577 9999999999999999999999988 89999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
++++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998753
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=1.1e-18 Score=127.83 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...+|||+|||..+++++|+++|++||.|..++++.+. +..+|||||+|.+.++|++||+.|||..|+|++|+|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999875 4579999999999999999999999999999999999998
Q ss_pred CCCC
Q 040633 153 TGLS 156 (167)
Q Consensus 153 ~~~~ 156 (167)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7543
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=6.7e-18 Score=121.30 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+....++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++||+. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 4556789999999999999999999999999999999999988999999999999999999999985 999999999999
Q ss_pred EEccCCC
Q 040633 149 KIAETGL 155 (167)
Q Consensus 149 ~~a~~~~ 155 (167)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9997653
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=113.13 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 040633 72 SSRTGIFI--KGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF-----YGR 144 (167)
Q Consensus 72 ~~~~~l~V--~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i-----~g~ 144 (167)
.+..+||| |||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 88999999999999999999999988753 268999999999999999999999998 689
Q ss_pred EEEEEEccCCCCC
Q 040633 145 FILVKIAETGLSK 157 (167)
Q Consensus 145 ~l~v~~a~~~~~~ 157 (167)
+|.|.+++..+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999999865443
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.1e-18 Score=114.63 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=72.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 040633 75 TGIFIKGL----PESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSR----KES----ADLAVE--NMNGKF 140 (167)
Q Consensus 75 ~~l~V~nL----p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~----~~~----a~~al~--~l~g~~ 140 (167)
..|||+|| |+.+++.+|+.+|+.||.|..+.++.|+.||.++|||||.|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 333 899988 789999
Q ss_pred eCCeEEEEEEccC
Q 040633 141 FYGRFILVKIAET 153 (167)
Q Consensus 141 i~g~~l~v~~a~~ 153 (167)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.4e-18 Score=117.38 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeE--EEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVV--QVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......+|||+|||+++++++|+++|+.| .|. .+.|+.++. |+++|||||+|.+.++|++||+ +++..++|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 566 899998877 9999999999999999999999 578999999999
Q ss_pred EEEccC
Q 040633 148 VKIAET 153 (167)
Q Consensus 148 v~~a~~ 153 (167)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=107.61 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=66.1
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 73 SRTG-IFIKGLPESMTEGR----VKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 73 ~~~~-l~V~nLp~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
+..+ |||+|||+.+++++ |+++|++|| .|.+| ++ |+|||.|.+.++|++|++.|||..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999987 558999995 99887 23 999999999999999999999999999999
Q ss_pred EEEEccCCCCC
Q 040633 147 LVKIAETGLSK 157 (167)
Q Consensus 147 ~v~~a~~~~~~ 157 (167)
+|++|+.+++-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876553
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=2.3e-17 Score=110.93 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGS-AFVWFSRKESADLAVENMNGKFFYG--RFILVKI 150 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~g~~i~g--~~l~v~~ 150 (167)
...|||+||++.+++++|+++|++||.|.++.+.. + .|| |||+|.+.++|+.|++.|||..|.| +.|+|++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34578999999999999999999999999999864 2 176 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 040633 151 AETGL 155 (167)
Q Consensus 151 a~~~~ 155 (167)
|+++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=116.11 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEV----VQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
.+..+|||+|||+++++++|+++|++||.| ..+.|+.+ .+|+++|||||+|.+.++|++||+. |+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 68888887 4799999999999999999999995 99999999999
Q ss_pred EEEccC
Q 040633 148 VKIAET 153 (167)
Q Consensus 148 v~~a~~ 153 (167)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=2.4e-18 Score=120.71 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
...+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++ ++|..++|++|+|++++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999988889999999999999999999999 89999999999999998
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 165
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=7e-18 Score=113.29 Aligned_cols=82 Identities=28% Similarity=0.419 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|+ ++++++|+++|++||.|..+.+. ..+|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999995 79999999999999999999885 35699999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 040633 149 KIAETGLSKN 158 (167)
Q Consensus 149 ~~a~~~~~~~ 158 (167)
++++++....
T Consensus 106 ~~a~~~~~~~ 115 (121)
T 2bz2_A 106 NIARKQPMLD 115 (121)
T ss_dssp EECCSSCC--
T ss_pred EEeCCCCCCC
Confidence 9998765443
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=2.9e-17 Score=115.14 Aligned_cols=82 Identities=28% Similarity=0.598 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG--RFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g--~~l~ 147 (167)
......+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999988889999999999999999999999999999987 9999
Q ss_pred EEEc
Q 040633 148 VKIA 151 (167)
Q Consensus 148 v~~a 151 (167)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=112.12 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLS---KQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
....++|||+|||.++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888877766 7999999999999999999999884 35666666
Q ss_pred EEEcc
Q 040633 148 VKIAE 152 (167)
Q Consensus 148 v~~a~ 152 (167)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=105.62 Aligned_cols=79 Identities=27% Similarity=0.327 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce--eCCeEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF--FYGRFI 146 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~--i~g~~l 146 (167)
.......+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ |+|.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34566799999999999999999999999999999998764 67999999999999984 45555 459999
Q ss_pred EEEEccCCCC
Q 040633 147 LVKIAETGLS 156 (167)
Q Consensus 147 ~v~~a~~~~~ 156 (167)
.|.+++++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999987543
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.6e-17 Score=114.94 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
++|||+|||.++++++|+++|++||.|..+.+..++. ++.+|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5799999999999999999999999999999998864 789999999999999999999999999999999999999765
Q ss_pred CC
Q 040633 155 LS 156 (167)
Q Consensus 155 ~~ 156 (167)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2.1e-17 Score=120.51 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLP-ESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
.++++|||+||| +.+++++|+++|++||.|.+++++.+ .+|||||+|.+.++|++||+.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999764 369999999999999999999999999999999999
Q ss_pred ccCC
Q 040633 151 AETG 154 (167)
Q Consensus 151 a~~~ 154 (167)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9743
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.9e-17 Score=120.64 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|+.||.|..+.++.++.+|..+|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999998888999999999999999999999999999999999999988
Q ss_pred cCCC
Q 040633 152 ETGL 155 (167)
Q Consensus 152 ~~~~ 155 (167)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6543
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=3e-17 Score=115.67 Aligned_cols=84 Identities=20% Similarity=0.367 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CCceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSK--QPLGSAFVWFSRKESADLAVENMNGKFFY---GRFIL 147 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~g~~i~---g~~l~ 147 (167)
+.++|||+|||.++++++|+++|++||.|..+.++.++.+| .++|||||+|.+.++|++|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999998876 67888
Q ss_pred EEEccCCCC
Q 040633 148 VKIAETGLS 156 (167)
Q Consensus 148 v~~a~~~~~ 156 (167)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888875543
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.4e-18 Score=106.30 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++++.. ...+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999998754 679999999999999865432 34568999999999
Q ss_pred cCCCCCCC
Q 040633 152 ETGLSKNR 159 (167)
Q Consensus 152 ~~~~~~~~ 159 (167)
+++....+
T Consensus 76 ~~~~~~~~ 83 (88)
T 1wf0_A 76 EPKHNSNS 83 (88)
T ss_dssp CCCCCCCS
T ss_pred CCCCCCCC
Confidence 87665543
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=4.9e-17 Score=113.67 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe--EEEE
Q 040633 71 TSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR--FILV 148 (167)
Q Consensus 71 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~--~l~v 148 (167)
.....+|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34568999999999999999999999999999999999888899999999999999999999999999999996 4888
Q ss_pred EEc
Q 040633 149 KIA 151 (167)
Q Consensus 149 ~~a 151 (167)
+||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=6.4e-17 Score=122.69 Aligned_cols=84 Identities=31% Similarity=0.494 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVK----KAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
+....++|||+|||.++++++|+ ++|++||.|..+.+.. +|+.+|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999976 8999999999998875 5889999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 040633 146 ILVKIAETGLS 156 (167)
Q Consensus 146 l~v~~a~~~~~ 156 (167)
|+|++++....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=3.9e-17 Score=102.99 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQF----G-------EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
...++|||+|||.++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999888654 599999999999999999 899999
Q ss_pred eCCeEEEEEE
Q 040633 141 FYGRFILVKI 150 (167)
Q Consensus 141 i~g~~l~v~~ 150 (167)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=7e-17 Score=113.78 Aligned_cols=82 Identities=24% Similarity=0.407 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CeEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY---GRFI 146 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~---g~~l 146 (167)
.....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|++|++.|||..+. |++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34567899999999999999999999999999999999885 5889999999999999999999999998876 4999
Q ss_pred EEEEcc
Q 040633 147 LVKIAE 152 (167)
Q Consensus 147 ~v~~a~ 152 (167)
+|++|+
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=5.3e-17 Score=114.75 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVK 149 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~ 149 (167)
.....++|||+|||..+++++|+++|+.||.|..+ ..+|..+|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988765 4568899999999999999999999999999999999999
Q ss_pred EccCCC
Q 040633 150 IAETGL 155 (167)
Q Consensus 150 ~a~~~~ 155 (167)
++++++
T Consensus 170 ~a~~k~ 175 (175)
T 1fje_B 170 YTGEKG 175 (175)
T ss_dssp ECSSCC
T ss_pred ecCCCC
Confidence 998753
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=2e-16 Score=103.61 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 040633 72 SSRTGIFIKGLPE-----SMTEGRVKKAFSQFGEVVQVKIVTEKLS-KQPLGSAFVWFSRKESADLAVENMNGKFFYGRF 145 (167)
Q Consensus 72 ~~~~~l~V~nLp~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~ 145 (167)
..+++|+|.|+-. +-.+++|++.|++||.|..+.++.++.+ +.++||+||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999862 2367899999999999999999987643 688999999999999999999999999999999
Q ss_pred EEEEEccC
Q 040633 146 ILVKIAET 153 (167)
Q Consensus 146 l~v~~a~~ 153 (167)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999964
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=3.8e-17 Score=121.33 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 70 DTSSRTGIFIKGLPESM---------TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
.....++|||+||+..+ ++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34568999999999998 79999999999999999999854 5999999999999999999999999
Q ss_pred e------------CCeEEEEEEccCCCCCCC
Q 040633 141 F------------YGRFILVKIAETGLSKNR 159 (167)
Q Consensus 141 i------------~g~~l~v~~a~~~~~~~~ 159 (167)
+ .|+.|.|+||+..+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-------
T ss_pred EeccccccccccCCCCEEEEEEccCCCCHHH
Confidence 9 899999999987655443
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=1.6e-16 Score=114.75 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
..++|||+|||.++++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|++|+..++ ..++|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999875 48899999999999999999998654 69999999999987
Q ss_pred CCC
Q 040633 153 TGL 155 (167)
Q Consensus 153 ~~~ 155 (167)
.-.
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 543
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=7.1e-17 Score=113.12 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 678999999999886
Q ss_pred CC
Q 040633 153 TG 154 (167)
Q Consensus 153 ~~ 154 (167)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.2e-16 Score=121.74 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCC-CCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 70 DTSSRTGIFIKGLPES-MTEGRVKKAFSQFGEVVQVKIVTEKL-SKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
......+|||+|||.. +++++|+++|+.||.|..+.+..+.. ||..+|||||+|.+.++|++|+ .|||..++|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4456799999999999 99999999999999999999988765 5899999999999999999999 9999999999999
Q ss_pred EEEccCC
Q 040633 148 VKIAETG 154 (167)
Q Consensus 148 v~~a~~~ 154 (167)
|.+++++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=4.8e-16 Score=117.97 Aligned_cols=85 Identities=22% Similarity=0.329 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.|+|..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 040633 152 ETGLS 156 (167)
Q Consensus 152 ~~~~~ 156 (167)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 86543
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=2.1e-16 Score=119.97 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 70 DTSSRTGIFIKGLPESM-TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......+|||+|||..+ ++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|.+|++.|||..++|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999998875 6899999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
.+++++..+
T Consensus 259 ~~a~~~~~~ 267 (284)
T 3smz_A 259 SFCAPGPPG 267 (284)
T ss_dssp EECCSSSCH
T ss_pred EEecCCCcc
Confidence 999876553
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.8e-16 Score=116.14 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 70 DTSSRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
...+.++|||+|||. ++++++|+++|++||.|..+.+..++ +|||||+|.+.++|++|++.|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345679999999999 99999999999999999999998764 689999999999999999999999999999999
Q ss_pred EEccCC
Q 040633 149 KIAETG 154 (167)
Q Consensus 149 ~~a~~~ 154 (167)
.+++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999755
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-15 Score=99.55 Aligned_cols=86 Identities=23% Similarity=0.399 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCCCCC-----------HHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 69 SDTSSRTGIFIKGLPESMT-----------EGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
......++|+|.||..... +++|+++|++||.|..+.| .++ ..+|||||+|.+.++|++|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3455689999999954432 5799999999999999965 443 378999999999999999999999
Q ss_pred CceeCCeEEEEEEccCCCCCC
Q 040633 138 GKFFYGRFILVKIAETGLSKN 158 (167)
Q Consensus 138 g~~i~g~~l~v~~a~~~~~~~ 158 (167)
|..++|+.|+|+++.++....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TCEETTEECEEEECCSCCCSS
T ss_pred CCEECCcEEEEEEeCCCCCcc
Confidence 999999999999998765443
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=8.7e-16 Score=116.43 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFIL 147 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~ 147 (167)
......++|||+|||..+++++|+++|++||.|..+.+..++ +|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 345567899999999999999999999999999999998653 489999999999999999999999999 99999
Q ss_pred EEEcc
Q 040633 148 VKIAE 152 (167)
Q Consensus 148 v~~a~ 152 (167)
|+|++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99986
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=5.8e-17 Score=114.57 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
.+....++|||+|||.++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|++|++ |+|..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35567899999999999999999999999987655 233344568899999999999999999995 9999999999999
Q ss_pred EEccCCCCC
Q 040633 149 KIAETGLSK 157 (167)
Q Consensus 149 ~~a~~~~~~ 157 (167)
.++.++...
T Consensus 86 ~~~~~~~~~ 94 (175)
T 1fje_B 86 EKPKGRDSK 94 (175)
T ss_dssp ECCCCSSCS
T ss_pred ecCCCcccc
Confidence 999865443
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=112.71 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 040633 73 SRTGIFIKGLPE-SMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIA 151 (167)
Q Consensus 73 ~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a 151 (167)
.+++|||+|||. .+++++|+++|++||.|..+.+..++ +|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999988764 689999999999999999999999999999999999
Q ss_pred cCC
Q 040633 152 ETG 154 (167)
Q Consensus 152 ~~~ 154 (167)
+..
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 755
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.2e-15 Score=111.24 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEV--VQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGR----F 145 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~----~ 145 (167)
.+..+|||+|||..+++++|+++|++||.| ..+++..++ +..+|||||+|.+.++|.+||..|||..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456899999999999999999999999998 888887764 55679999999999999999999999999877 6
Q ss_pred EEEEEc
Q 040633 146 ILVKIA 151 (167)
Q Consensus 146 l~v~~a 151 (167)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=2.5e-15 Score=113.08 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=72.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 040633 69 SDTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILV 148 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v 148 (167)
......++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|+|..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34566789999999999999999999999999999988643 599999999999999999999999999999999
Q ss_pred EEccC
Q 040633 149 KIAET 153 (167)
Q Consensus 149 ~~a~~ 153 (167)
.++.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=2.1e-15 Score=114.84 Aligned_cols=85 Identities=15% Similarity=0.302 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
...++|||+|||..+++++|+++|..|| .|..+.++.++. |..+|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999988765 78899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 040633 151 AETGLSK 157 (167)
Q Consensus 151 a~~~~~~ 157 (167)
+.+....
T Consensus 194 a~~~~~~ 200 (292)
T 2ghp_A 194 SNPLEKS 200 (292)
T ss_dssp CCCC---
T ss_pred CCCCccc
Confidence 9865443
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=109.07 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~v~ 149 (167)
....+|||+|||..+++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|++|++.|||..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999988653 2589999999999999999999999999 9999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=5.3e-16 Score=101.37 Aligned_cols=72 Identities=24% Similarity=0.518 Sum_probs=64.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 79 IKGLPESMTEGRVKKAF------------SQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 79 V~nLp~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
+.||+..+++++|++.| ++||.|..+.+..+.. ++++|||||.|.+.++|++|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999988754 7899999999999999999999999999999999
Q ss_pred EEEEc
Q 040633 147 LVKIA 151 (167)
Q Consensus 147 ~v~~a 151 (167)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=5.6e-15 Score=111.15 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC-ceeC---CeEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNG-KFFY---GRFIL 147 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g-~~i~---g~~l~ 147 (167)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..||+ ..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34689999999999999999999999999999999998 5799999999999999999999999954 4444 99999
Q ss_pred EEEccCCC
Q 040633 148 VKIAETGL 155 (167)
Q Consensus 148 v~~a~~~~ 155 (167)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99997654
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=4.4e-15 Score=97.14 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=69.7
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhcCCCeEEEEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 73 SRTGIFIKGL--PESMT--------EGRVKKAFSQFGEVVQVKIVTEKLS--KQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 73 ~~~~l~V~nL--p~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
+++.|.+.|+ |.++. +++|++.|++||.|..+.++.+..+ +.++|++||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4677888887 43443 3689999999999999999887654 3678999999999999999999999999
Q ss_pred eCCeEEEEEEccC
Q 040633 141 FYGRFILVKIAET 153 (167)
Q Consensus 141 i~g~~l~v~~a~~ 153 (167)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999854
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=5e-15 Score=109.36 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFG-EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY-GRFILVK 149 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~-g~~l~v~ 149 (167)
....+|||+|||..+++++|+++|++|| .|..+.+... .+|||||+|.+.++|++|++.|||..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 3589999999999999999999999999 9999999
Q ss_pred EccCC
Q 040633 150 IAETG 154 (167)
Q Consensus 150 ~a~~~ 154 (167)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99864
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=7.8e-15 Score=103.09 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQF----G-------EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
+.++|||+|||.++++++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 667766643 4699999999999999999 7999999
Q ss_pred CCeEEEEEEccCCC
Q 040633 142 YGRFILVKIAETGL 155 (167)
Q Consensus 142 ~g~~l~v~~a~~~~ 155 (167)
.|+.|+|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999987543
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=1.6e-14 Score=96.38 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=69.6
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhcCCCeEEEEEeecCC----CCCCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 73 SRTGIFIKGLP--ESM---TEGRVKKAFSQFGEVVQVKIVTEKL----SKQPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 73 ~~~~l~V~nLp--~~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
++++|++.|+- .++ -+++|++.|++||.|..+.|+.++. ++.++|++||+|.+.++|++|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46788888883 222 3589999999999999999998754 35678999999999999999999999999999
Q ss_pred eEEEEEEccC
Q 040633 144 RFILVKIAET 153 (167)
Q Consensus 144 ~~l~v~~a~~ 153 (167)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=1.8e-14 Score=103.46 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 73 SRTGIFIKGLPESMTEGRVKKAFSQF----G-------EVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
..++|||+|||.++++++|+++|+.| | .|..+.+ +..+|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555555 345799999999999999999 7999999
Q ss_pred CCeEEEEEEccCC
Q 040633 142 YGRFILVKIAETG 154 (167)
Q Consensus 142 ~g~~l~v~~a~~~ 154 (167)
.|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.2e-14 Score=90.21 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCC
Q 040633 84 ESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETGLSKNR 159 (167)
Q Consensus 84 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~~~~~~ 159 (167)
..+++++|+++|++||.|..+.++ ++.+|||||+|.+.++|+.|++.+++ +.|++|+|+|++++.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDAS 95 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCCS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCCC
Confidence 468999999999999999999987 35789999999999999999997554 6799999999987655443
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=1.1e-13 Score=107.68 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---Ce
Q 040633 70 DTSSRTGIFIKG--LPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY---GR 144 (167)
Q Consensus 70 ~~~~~~~l~V~n--Lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~---g~ 144 (167)
...+..+|||+| |+..+++++|+++|++||.|..+.+.. .||||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999998 589999999999999999999887643 4699999999999999999999999873 44
Q ss_pred --EEEEEEcc
Q 040633 145 --FILVKIAE 152 (167)
Q Consensus 145 --~l~v~~a~ 152 (167)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888875
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=1.1e-12 Score=86.81 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 040633 73 SRTGIFIKGLPESM----------TEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFY 142 (167)
Q Consensus 73 ~~~~l~V~nLp~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~ 142 (167)
+++.|.+.|+=..- -+++|++.|++||.|..+.+..+. .+|++||.|.+.++|++|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45567777663221 125789999999999999886542 5899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 040633 143 GRFILVKIAE 152 (167)
Q Consensus 143 g~~l~v~~a~ 152 (167)
|+.|+|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.7e-12 Score=80.03 Aligned_cols=74 Identities=24% Similarity=0.397 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCC----CCCCH----HHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 040633 72 SSRTGIFIKGLP----ESMTE----GRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG 143 (167)
Q Consensus 72 ~~~~~l~V~nLp----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g 143 (167)
++..+|+|.-++ ..+.+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 456778887766 33444 5788999999999999998764 7999999999999999 99999999
Q ss_pred eEEEEEEccCC
Q 040633 144 RFILVKIAETG 154 (167)
Q Consensus 144 ~~l~v~~a~~~ 154 (167)
+.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999753
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2e-11 Score=81.25 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCC-HHHHHHHHHHhC--CceeCCe
Q 040633 69 SDTSSRTGIFIKGLPES-MTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSR-KESADLAVENMN--GKFFYGR 144 (167)
Q Consensus 69 ~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~al~~l~--g~~i~g~ 144 (167)
-.-..++.|||+||+.+ ++.++|+++|+.||.|..|.+..+. ..|||.|.+ .++|..|++.|+ +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567899999999999 9999999999999999999998765 359999999 899999999995 6778999
Q ss_pred EEEEEEcc
Q 040633 145 FILVKIAE 152 (167)
Q Consensus 145 ~l~v~~a~ 152 (167)
.++++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88888764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=3.7e-11 Score=75.89 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCC-----CCH----HHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 70 DTSSRTGIFIKGLPES-----MTE----GRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
-.++..+|+|.-++.. +.+ .+|.+.|.+||.+..++++.++ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456688999887632 333 5688899999999999998864 8999999999999999 99999
Q ss_pred eCCeEEEEEEccC
Q 040633 141 FYGRFILVKIAET 153 (167)
Q Consensus 141 i~g~~l~v~~a~~ 153 (167)
+.|+.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=1.4e-10 Score=85.05 Aligned_cols=68 Identities=29% Similarity=0.471 Sum_probs=60.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeecC----CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 040633 85 SMTEGRVKKAFSQFGEVVQVKIVTEK----LSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAE 152 (167)
Q Consensus 85 ~~~~~~l~~~f~~~G~i~~~~~~~~~----~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~ 152 (167)
+-.+++|++.|++||.|..+.+..+. .++.++|++||+|.+.++|++|++.|||..++|+.|.+.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34567899999999999999998554 345899999999999999999999999999999999999985
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.4e-08 Score=63.14 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQF-----GEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
...+++-+-|||..+++..|+.+.+.+ |.+..+.+..+. +.|+|+|.+...|-+|.-.|+|.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346889999999999999999999999 999999888775 679999999999999998899999999999
Q ss_pred EEEEc
Q 040633 147 LVKIA 151 (167)
Q Consensus 147 ~v~~a 151 (167)
+|--.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=2.6e-05 Score=49.94 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCH-----HHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 040633 73 SRTGIFIKGLPESMTE-----GRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFIL 147 (167)
Q Consensus 73 ~~~~l~V~nLp~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~ 147 (167)
-.++|+|.||+.++-. +.++++|..|+.+........ ..-..|.|.+.++|.+|-..||+..+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4578999999875532 567889999999877666543 23468999999999999999999999999999
Q ss_pred EEEccCCC
Q 040633 148 VKIAETGL 155 (167)
Q Consensus 148 v~~a~~~~ 155 (167)
|-++.+..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99997543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.0004 Score=44.26 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=58.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc-----CCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQ-----FGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFI 146 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~-----~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l 146 (167)
....+|.|.|||..+.++.|.-+|+. -|.|..++... +-|+|+|.+.+.|++.|.. ..+.++|.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45689999999999999999999986 24677766532 4589999999999999983 3578888999
Q ss_pred EEEEccC
Q 040633 147 LVKIAET 153 (167)
Q Consensus 147 ~v~~a~~ 153 (167)
.|...-+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 9876544
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.78 E-value=0.0001 Score=46.45 Aligned_cols=54 Identities=26% Similarity=0.473 Sum_probs=45.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 136 (167)
.+.+++ +.|..+...||.++|+.||. ..|+++.| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 455556 99999999999999999994 45677765 46999999999999999976
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.64 E-value=0.00087 Score=41.94 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=61.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHhCCceeCCe-----EEE
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ--PLGSAFVWFSRKESADLAVENMNGKFFYGR-----FIL 147 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~al~~l~g~~i~g~-----~l~ 147 (167)
++|-|.+||..++++++.+.+.....+.....+.++.+.+ ...-|||.|.+.+++....+.++|+.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5788999999999999999999988877666666554332 346799999999999999999999886432 345
Q ss_pred EEEc
Q 040633 148 VKIA 151 (167)
Q Consensus 148 v~~a 151 (167)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=0.00031 Score=46.11 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=58.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEE
Q 040633 70 DTSSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYG-RFILV 148 (167)
Q Consensus 70 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g-~~l~v 148 (167)
+....+-|.|-+.|... ...+...|++||.|.+.... ....+-.|.|.++.+|++||. .||..++| ..|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 44557889999999885 46688899999999887752 133789999999999999999 69999985 55666
Q ss_pred EE
Q 040633 149 KI 150 (167)
Q Consensus 149 ~~ 150 (167)
..
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.58 E-value=0.00011 Score=46.43 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=45.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
+.+++ +.|..+...||.++|+.|| -..|+++.| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44555 9999999999999999999 556777766 469999999999999999764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.79 E-value=0.0046 Score=39.00 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHhCCceeCCe-----
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQ--PLGSAFVWFSRKESADLAVENMNGKFFYGR----- 144 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~al~~l~g~~i~g~----- 144 (167)
..+-+|.|..||..++++++.+.+...-.+.....+..+.+.+ .-.-|||.|.+.++...-.+..+|..+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 3467899999999999999888777654433222322222211 234689999999999999999999876432
Q ss_pred EEEEEEc
Q 040633 145 FILVKIA 151 (167)
Q Consensus 145 ~l~v~~a 151 (167)
+..|++|
T Consensus 87 ~a~VE~A 93 (97)
T 2l08_A 87 PAVVEFA 93 (97)
T ss_dssp EEEEEEC
T ss_pred eeEEEec
Confidence 4556666
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0015 Score=52.66 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVE 134 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~ 134 (167)
...+.|+|. +|..+++.+|.+.|++||.|..+.+..++. .|+.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 346889997 799999999999999999999988765542 899999999999987765
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.51 E-value=0.003 Score=41.99 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=54.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEee------------cCCCC-CCceEEEEEeCCHHHHHHHHHHhCCc
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQ-VKIVT------------EKLSK-QPLGSAFVWFSRKESADLAVENMNGK 139 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-~~~~~------------~~~~g-~~~g~afv~f~~~~~a~~al~~l~g~ 139 (167)
...|.|-+.|.+... .+.+.|++||.|.+ ..... .+..+ ....+..|.|++..+|++||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 356778888877664 46778999999865 21110 00000 134688999999999999999 7999
Q ss_pred eeCCeEEEEEEcc
Q 040633 140 FFYGRFILVKIAE 152 (167)
Q Consensus 140 ~i~g~~l~v~~a~ 152 (167)
.++|..|-|..-+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877776653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.46 E-value=0.0012 Score=44.72 Aligned_cols=40 Identities=15% Similarity=-0.026 Sum_probs=37.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEccC
Q 040633 113 KQPLGSAFVWFSRKESADLAVENM-NGKFFYGRFILVKIAET 153 (167)
Q Consensus 113 g~~~g~afv~f~~~~~a~~al~~l-~g~~i~g~~l~v~~a~~ 153 (167)
.+.+|+++|+|.+.++|++|++.| ||..++| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 9999999 999998865
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.42 E-value=0.0044 Score=42.19 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.7
Q ss_pred EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc
Q 040633 104 VKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGK 139 (167)
Q Consensus 104 ~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 139 (167)
++++.+. ...+|||||+|.+.++|++|++.+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555553 468999999999999999999888754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.84 E-value=0.52 Score=38.36 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
...++|+ +|..|...+|.++|+.||.+ .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4556665 99999999999999999954 4555543 469999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.45 E-value=3.6 Score=23.92 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=40.3
Q ss_pred EEEc-CCCCCCCHHHHHHHhhcCCC-----eEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 040633 77 IFIK-GLPESMTEGRVKKAFSQFGE-----VVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKI 150 (167)
Q Consensus 77 l~V~-nLp~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~ 150 (167)
+|+. +-...+...+|..++..-+. |-.+.+. + .|.||+... +.++.+++.|++..+.|+.++|+.
T Consensus 3 ~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 4442 33445566677777765443 3344442 1 578888864 567889999999999999999987
Q ss_pred cc
Q 040633 151 AE 152 (167)
Q Consensus 151 a~ 152 (167)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=63.59 E-value=23 Score=21.71 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=47.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 040633 72 SSRTGIFIKGLPESMTEGRVKKAFSQFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMN 137 (167)
Q Consensus 72 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 137 (167)
...+-+-|-|+|..+-..++.-.....|---.+..+- |-|.|.|.+.++..-|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 3457788999999999999888888888766666542 669999999999999998663
No 224
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.67 E-value=52 Score=20.44 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHHH
Q 040633 84 ESMTEGRVKKAFSQ-FGE---VVQV-KIVTEKLSKQPLGSAFVWFSRKESADLA 132 (167)
Q Consensus 84 ~~~~~~~l~~~f~~-~G~---i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a 132 (167)
...+..+|++-+.+ |+. +..+ .+...-..|+..|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34566777775553 443 3333 33333445667788876 7777766654
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.81 E-value=66 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=26.2
Q ss_pred CCHHHHHHHh--hcCCCeEEEEEeecCCCCCCceEEEEEeCC
Q 040633 86 MTEGRVKKAF--SQFGEVVQVKIVTEKLSKQPLGSAFVWFSR 125 (167)
Q Consensus 86 ~~~~~l~~~f--~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 125 (167)
....+|.+.| ..|..+. +....+. ....|++.|.|.+
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 4557899977 8898866 4444433 3477999999975
No 226
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.57 E-value=60 Score=20.23 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 040633 84 ESMTEGRVKKAFSQ-FGE---VVQV-KIVTEKLSKQPLGSAFVWFSRKESADL 131 (167)
Q Consensus 84 ~~~~~~~l~~~f~~-~G~---i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~ 131 (167)
...+..+|++-+.+ |+. +..+ .+...-..|+..|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34566777765543 442 3333 34344455677888877 777776654
No 227
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.22 E-value=53 Score=20.44 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=47.8
Q ss_pred EEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 040633 78 FIKGLPESMTEGRVKKAFS-QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENMNGKFFYGRFILVKIAETG 154 (167)
Q Consensus 78 ~V~nLp~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~i~g~~l~v~~a~~~ 154 (167)
.|-.+++.+.-+||..-.. .||.-..+... ++ -..|-..+.+|.++||+.|+.. ..-+.|+|-+..++
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 3445678888888887665 68987777665 22 2578889999999999987754 44445566555544
No 228
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=40.98 E-value=66 Score=20.22 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCCHHHHHHHhhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHHH
Q 040633 85 SMTEGRVKKAFSQ-FGE---VVQV-KIVTEKLSKQPLGSAFVWFSRKESADLA 132 (167)
Q Consensus 85 ~~~~~~l~~~f~~-~G~---i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a 132 (167)
..+..+|++-+.+ |+. +..| .+...-..|+..|||.| |++.+.|.+.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4566777765543 443 2333 33333345677888877 7777776643
No 229
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.10 E-value=42 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 115 PLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 115 ~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
..||.||++...++...++....|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 78999999999999999998877753
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.96 E-value=46 Score=24.40 Aligned_cols=31 Identities=13% Similarity=0.351 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeEEEE
Q 040633 74 RTGIFIKGLPESMTEGRVKKAFSQFGEVVQVK 105 (167)
Q Consensus 74 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~ 105 (167)
...+.|+|+|+.++...|.+++.. +.+..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 356789999999999999999887 5554433
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.05 E-value=12 Score=23.49 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=29.4
Q ss_pred CHHHHHHHhhcCCCeEEEEEeecCCCCCC-ceEEEEEeCCHHHHHHHHHHhCC
Q 040633 87 TEGRVKKAFSQFGEVVQVKIVTEKLSKQP-LGSAFVWFSRKESADLAVENMNG 138 (167)
Q Consensus 87 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~-~g~afv~f~~~~~a~~al~~l~g 138 (167)
..+++..+..+.+ +..+.+.....+|+. .-.-+-.|.+.++|.+|+..|..
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 3455555555555 233444332222221 22345678999999999998874
No 232
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.52 E-value=26 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=24.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 040633 75 TGIFIKGLPESMTEGRVKKAFSQFGEVVQVKI 106 (167)
Q Consensus 75 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~ 106 (167)
....|+|||+.++...|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999999999876544544433
No 233
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.47 E-value=1.4e+02 Score=19.98 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhhc-CCC---eEEE-EEeecCCCCCCceEEEEEeCCHHHHHH
Q 040633 85 SMTEGRVKKAFSQ-FGE---VVQV-KIVTEKLSKQPLGSAFVWFSRKESADL 131 (167)
Q Consensus 85 ~~~~~~l~~~f~~-~G~---i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~ 131 (167)
..+..||++-+.. |+. +..| .+...-..|...|||.| |++.+.|..
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 5566777776654 553 2223 23333344567788887 777776654
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.44 E-value=76 Score=26.46 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=39.4
Q ss_pred cCCCCCCCHHHHHHHhh----cCCCeEEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 040633 80 KGLPESMTEGRVKKAFS----QFGEVVQVKIVTEKLSKQPLGSAFVWFSRKESADLAVENM 136 (167)
Q Consensus 80 ~nLp~~~~~~~l~~~f~----~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 136 (167)
+..+.+.+..+|..+|- -+|.|.++.+-..+. ...+.++++.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34555666667888884 367788776654432 345677899999999998888765
No 235
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.15 E-value=53 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhCCce
Q 040633 114 QPLGSAFVWFSRKESADLAVENMNGKF 140 (167)
Q Consensus 114 ~~~g~afv~f~~~~~a~~al~~l~g~~ 140 (167)
..+||-||+=.+..+...|++.+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999988766543
No 236
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.90 E-value=60 Score=20.04 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhhc-CCCeEEEEEee----cCCCCCCceEEEEEeCCHHHHHH
Q 040633 85 SMTEGRVKKAFSQ-FGEVVQVKIVT----EKLSKQPLGSAFVWFSRKESADL 131 (167)
Q Consensus 85 ~~~~~~l~~~f~~-~G~i~~~~~~~----~~~~g~~~g~afv~f~~~~~a~~ 131 (167)
..+..+|++-+.+ |+.-.++.++. .-..|+..|||.| |++.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566667665443 44322222222 2233556777766 555555544
No 237
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.33 E-value=45 Score=14.93 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.9
Q ss_pred CHHHHHHHhhcC
Q 040633 87 TEGRVKKAFSQF 98 (167)
Q Consensus 87 ~~~~l~~~f~~~ 98 (167)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 578899998876
No 238
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=22.58 E-value=69 Score=22.55 Aligned_cols=28 Identities=4% Similarity=0.132 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCHHHHHHHHHHhCCcee
Q 040633 114 QPLGSAFVWFSRKESADLAVENMNGKFF 141 (167)
Q Consensus 114 ~~~g~afv~f~~~~~a~~al~~l~g~~i 141 (167)
..+||-||+=.+..+...||+.+.+...
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 3679999999999999999998887543
No 239
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.95 E-value=1.8e+02 Score=19.56 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCHHHHHHHhhcCCCeE---EEEEeecCCCCCCceEEEEE
Q 040633 86 MTEGRVKKAFSQFGEVV---QVKIVTEKLSKQPLGSAFVW 122 (167)
Q Consensus 86 ~~~~~l~~~f~~~G~i~---~~~~~~~~~~g~~~g~afv~ 122 (167)
.++++|+++-.+.|.+. ++.+..+..+|..+.+||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 57899999999999863 45555553368888877764
No 240
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.44 E-value=1.4e+02 Score=17.88 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=19.4
Q ss_pred CeEEEEEeecCCCCCCceEEEEEeCC
Q 040633 100 EVVQVKIVTEKLSKQPLGSAFVWFSR 125 (167)
Q Consensus 100 ~i~~~~~~~~~~~g~~~g~afv~f~~ 125 (167)
.|.++++..-...|+.++||=|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 35667666555568889999999975
No 241
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.11 E-value=28 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 040633 77 IFIKGLPESMTEGRVKKAFSQFGEVVQVKI 106 (167)
Q Consensus 77 l~V~nLp~~~~~~~l~~~f~~~G~i~~~~~ 106 (167)
..|+|+|+.++...|.+++...+.+..+.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 478999999999999999986655544433
Done!