Query 040635
Match_columns 177
No_of_seqs 121 out of 1323
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 8.4E-40 2.9E-44 217.9 1.4 80 2-83 1-80 (90)
2 1egw_A MADS box transcription 100.0 4.1E-39 1.4E-43 209.7 1.3 74 2-77 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 6.1E-37 2.1E-41 207.4 -1.3 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 1.4E-36 4.7E-41 203.2 -1.5 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 6.9E-36 2.4E-40 203.5 -1.3 69 1-71 9-77 (103)
6 1j1d_C Troponin I, TNI; THIN f 70.0 25 0.00084 24.4 8.5 56 94-151 24-79 (133)
7 3twe_A Alpha4H; unknown functi 68.5 8.3 0.00028 18.4 3.3 20 89-108 5-24 (27)
8 1deq_A Fibrinogen (alpha chain 67.0 48 0.0016 27.1 9.4 40 28-72 23-62 (390)
9 2ky6_A Mediator of RNA polymer 62.3 6.1 0.00021 28.5 3.0 38 36-73 116-159 (166)
10 1j1e_C Troponin I, TNI; THIN f 61.1 43 0.0015 24.4 7.4 55 94-150 24-78 (180)
11 1p9i_A Cortexillin I/GCN4 hybr 60.5 14 0.00046 18.2 3.2 25 133-157 2-26 (31)
12 3nrf_A APAG protein; structura 59.7 1.6 5.6E-05 29.1 -0.3 39 11-54 21-59 (106)
13 2dl1_A Spartin; SPG20, MIT, st 45.0 30 0.001 23.4 4.1 38 127-165 65-102 (116)
14 3rmq_A Uncharacterized protein 34.2 8.4 0.00029 25.9 -0.0 15 33-47 30-44 (116)
15 1ytz_I Troponin I; muscle, THI 31.1 1.5E+02 0.0052 21.5 8.2 55 95-152 23-77 (182)
16 2k1v_A Insulin-like peptide IN 30.3 15 0.00051 17.9 0.5 9 32-40 14-22 (26)
17 2zvv_Y Cyclin-dependent kinase 29.8 10 0.00034 18.2 -0.1 11 15-25 15-25 (26)
18 1j1d_B Troponin T, TNT; THIN f 27.3 64 0.0022 21.4 3.4 23 126-148 38-60 (106)
19 1ytz_T Troponin T; muscle, THI 27.2 48 0.0016 22.0 2.8 24 125-148 37-60 (107)
20 2jo8_A Serine/threonine-protei 26.8 81 0.0028 18.0 3.3 26 127-152 7-36 (51)
21 1g6u_A Domain swapped dimer; d 26.6 82 0.0028 16.9 6.7 22 128-149 15-36 (48)
22 2l5g_B Putative uncharacterize 25.9 78 0.0027 17.2 3.0 26 130-155 2-27 (42)
23 2rpa_A Katanin P60 ATPase-cont 23.7 7.5 0.00026 24.4 -1.6 34 29-75 16-49 (78)
24 3hcz_A Possible thiol-disulfid 23.1 55 0.0019 21.3 2.6 30 44-73 114-143 (148)
25 2l16_A SEC-independent protein 21.3 8.8 0.0003 24.1 -1.7 29 43-75 16-44 (78)
26 3fxd_A Protein ICMQ; helix bun 20.6 1.3E+02 0.0044 17.5 3.4 20 128-147 3-22 (57)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=8.4e-40 Score=217.88 Aligned_cols=80 Identities=33% Similarity=0.475 Sum_probs=73.6
Q ss_pred CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccccccc
Q 040635 2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGK 81 (177)
Q Consensus 2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~~~~k 81 (177)
||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++++ |+| ++++.||+||+..+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-f~s-~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-eCC-CCHHHHHHHHHhcCcccccC
Confidence 8999999999999999999999999999999999999999999999999999877 776 67999999999988776554
Q ss_pred cc
Q 040635 82 YM 83 (177)
Q Consensus 82 ~~ 83 (177)
..
T Consensus 79 ~~ 80 (90)
T 3p57_A 79 TN 80 (90)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.1e-39 Score=209.67 Aligned_cols=74 Identities=35% Similarity=0.513 Sum_probs=67.8
Q ss_pred CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccc
Q 040635 2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIK 77 (177)
Q Consensus 2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~ 77 (177)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++++ |++ ++++.||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-~~s-~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-CCC-CCHHHHHHHHHhccCC
Confidence 8999999999999999999999999999999999999999999999999999887 665 5799999999987654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=6.1e-37 Score=207.41 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=66.6
Q ss_pred CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhc
Q 040635 1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNN 73 (177)
Q Consensus 1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~ 73 (177)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ +++..||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-ps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FST-PKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EEC-TTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-ecC-CCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999887 555 478999999964
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.4e-36 Score=203.17 Aligned_cols=70 Identities=26% Similarity=0.410 Sum_probs=65.4
Q ss_pred CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhh
Q 040635 1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFN 72 (177)
Q Consensus 1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~ 72 (177)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ ++++.+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-f~s-~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-EEC-GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-ecC-CCHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999999999877 665 57888988764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.9e-36 Score=203.50 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=64.7
Q ss_pred CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHh
Q 040635 1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKF 71 (177)
Q Consensus 1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry 71 (177)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ +++..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-EEC-GGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-ecC-ccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999877 555 5788888875
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=69.96 E-value=25 Score=24.42 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040635 94 ISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIAD 151 (177)
Q Consensus 94 ~~kl~e~l~k~~~~~~~~e~~~l~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~ 151 (177)
..+..+.++++++...+..- .++..... --+++++|.++|+++...|-+.+..+.+
T Consensus 24 l~kA~e~l~kE~e~k~eeKk-kiLaER~~-pL~id~ls~~~L~e~~keLh~~I~~LEe 79 (133)
T 1j1d_C 24 LQIAKQELEREAEERRGEKG-RALSTRAQ-PLELAGLGFAELQDLARQLHARVDKVDE 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTC-CCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445556555544333222 23333321 3468999999999988887665555443
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=68.54 E-value=8.3 Score=18.43 Aligned_cols=20 Identities=50% Similarity=0.559 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 040635 89 FLSKKISNLFERMRKERKKN 108 (177)
Q Consensus 89 ~l~~~~~kl~e~l~k~~~~~ 108 (177)
.|..++..+++++.+++++.
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45567788888888887754
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.01 E-value=48 Score=27.10 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=23.7
Q ss_pred hhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhh
Q 040635 28 LKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFN 72 (177)
Q Consensus 28 L~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~ 72 (177)
+..+|..-|---|+..|+ +..+-.-||+-=.+..+|++..
T Consensus 23 ~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred hhhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhh
Confidence 444555555555777777 3333334665446888888775
No 9
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=62.27 E-value=6.1 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred hhccCCceeeEEeecCCCCCcc-cCCch-----HHHHHHHHhhc
Q 040635 36 TTLCGVTACAIICASFDHQPEI-WPSPA-----EAVRVLDKFNN 73 (177)
Q Consensus 36 s~LC~~~va~ivfsp~gk~~~~-~ps~~-----~v~~vl~ry~~ 73 (177)
+.-|++.|-+++|||+.+.|-. -|.+. .+..||+.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 4569999999999999886543 45542 45566666554
No 10
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=61.10 E-value=43 Score=24.44 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040635 94 ISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIA 150 (177)
Q Consensus 94 ~~kl~e~l~k~~~~~~~~e~~~l~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~ 150 (177)
..+..+.|+++++...+..- .++..... --.+++||.++|+++...|-+.+..+.
T Consensus 24 l~kA~e~L~~E~e~k~eEKk-kiLaER~k-PLnid~Lse~~L~e~ckELh~~I~~LE 78 (180)
T 1j1e_C 24 LQIAKQELEREAEERRGEKG-RALSTRAQ-PLELAGLGFAELQDLARQLHARVDKVD 78 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHSC-CCCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCC-CCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33445555555543332222 23333321 347899999999998888755554433
No 11
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=60.54 E-value=14 Score=18.24 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040635 133 EDLKDLDHLLKEKIKVIADKIECEM 157 (177)
Q Consensus 133 eeL~~l~~~Le~~l~~v~~r~~~~l 157 (177)
++|+.|...|+.--+.+.++.+.+|
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888877777777777743
No 12
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=59.65 E-value=1.6 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.9
Q ss_pred ccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCC
Q 040635 11 ISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQ 54 (177)
Q Consensus 11 I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~ 54 (177)
|.++.....||-=.-.-|-++.-+|+.+| ++.|+|.|+-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gke 59 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQS 59 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCE
Confidence 34555667788888888999999999887 9999999974
No 13
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.04 E-value=30 Score=23.42 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 040635 127 NNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSIPAN 165 (177)
Q Consensus 127 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~~l~~~~~~~~ 165 (177)
-.+-.-++..+|...+...|..|++|+.. |.....|+.
T Consensus 65 ~~g~~we~Ar~lq~KM~~nL~~v~~RL~~-Le~~~~~~~ 102 (116)
T 2dl1_A 65 HTGPGWESARQMQQKMKETLQNVRTRLEI-LEKGLATSL 102 (116)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSSC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 34567789999999999999999999999 654444443
No 14
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=34.23 E-value=8.4 Score=25.91 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=11.9
Q ss_pred hhhhhccCCceeeEE
Q 040635 33 SELTTLCGVTACAII 47 (177)
Q Consensus 33 ~ELs~LC~~~va~iv 47 (177)
..+.+|||++|..=.
T Consensus 30 ~~ftaLCG~~VTp~~ 44 (116)
T 3rmq_A 30 RPFTALCGETVTPQT 44 (116)
T ss_dssp CCEECTTSCEECCCG
T ss_pred CccccccCCeecCCC
Confidence 468999999987644
No 15
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.10 E-value=1.5e+02 Score=21.52 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040635 95 SNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADK 152 (177)
Q Consensus 95 ~kl~e~l~k~~~~~~~~e~~~l~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r 152 (177)
.+..+.|+.++....+..- .++..... --++++ |.++|+++...|-+.+..+.+-
T Consensus 23 ~kA~e~L~~E~e~k~eeKk-kiLaER~k-PLnid~-se~~L~e~ckELh~~I~~LEeE 77 (182)
T 1ytz_I 23 QLAVTEIEKEAAAKEVEKQ-NYLAEHSP-PLSLPG-SMQELQELSKKLHAKIDSVDEE 77 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHSC-CCCCCC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhCC-CCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544333222 23333321 346788 9999999998887776665544
No 16
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=30.28 E-value=15 Score=17.92 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=6.8
Q ss_pred hhhhhhccC
Q 040635 32 LSELTTLCG 40 (177)
Q Consensus 32 A~ELs~LC~ 40 (177)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 469999995
No 17
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=29.80 E-value=10 Score=18.24 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=7.9
Q ss_pred Ccccchhhccc
Q 040635 15 SVRKVTFKKRR 25 (177)
Q Consensus 15 ~~R~vtf~KRr 25 (177)
+.|.+.|.||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 46777777776
No 18
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.31 E-value=64 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 040635 126 MNNFDCLEDLKDLDHLLKEKIKV 148 (177)
Q Consensus 126 ~l~~Ls~eeL~~l~~~Le~~l~~ 148 (177)
++++||.++|.++...|-+.+..
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~ 60 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYN 60 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788888888777776554444
No 19
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=27.15 E-value=48 Score=22.00 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 040635 125 DMNNFDCLEDLKDLDHLLKEKIKV 148 (177)
Q Consensus 125 ~~l~~Ls~eeL~~l~~~Le~~l~~ 148 (177)
-++++||.++|+++...|-+.+..
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~ 60 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQ 60 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368899999999888877554443
No 20
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=26.79 E-value=81 Score=17.99 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHH----HHHHHHHHHH
Q 040635 127 NNFDCLEDLKDLDHLL----KEKIKVIADK 152 (177)
Q Consensus 127 l~~Ls~eeL~~l~~~L----e~~l~~v~~r 152 (177)
+.++|.+||.+....| +.-+.+++.|
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~Me~Ei~elr~R 36 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPMMEQEIEEIRQK 36 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 5678999988766665 4455555554
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.58 E-value=82 Score=16.93 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 040635 128 NFDCLEDLKDLDHLLKEKIKVI 149 (177)
Q Consensus 128 ~~Ls~eeL~~l~~~Le~~l~~v 149 (177)
++.|.+||..|+..|...-+.+
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899988887765444333
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.92 E-value=78 Score=17.24 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040635 130 DCLEDLKDLDHLLKEKIKVIADKIEC 155 (177)
Q Consensus 130 Ls~eeL~~l~~~Le~~l~~v~~r~~~ 155 (177)
+|-+||.+=...++.-+..++++|..
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665
No 23
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.73 E-value=7.5 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.1
Q ss_pred hhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCc
Q 040635 29 KKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFP 75 (177)
Q Consensus 29 ~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~ 75 (177)
.|+|.|.+.+++=|.|++.| ..+..-|.+|...-
T Consensus 16 ~k~ARe~Al~GnYdta~~yY-------------~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYY-------------QGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHH-------------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHH-------------HHHHHHHHHHHHhc
Confidence 58999999999888887643 24778888887643
No 24
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=23.14 E-value=55 Score=21.28 Aligned_cols=30 Identities=3% Similarity=-0.137 Sum_probs=19.8
Q ss_pred eeEEeecCCCCCcccCCchHHHHHHHHhhc
Q 040635 44 CAIICASFDHQPEIWPSPAEAVRVLDKFNN 73 (177)
Q Consensus 44 a~ivfsp~gk~~~~~ps~~~v~~vl~ry~~ 73 (177)
.++++.++|+....+.+...++.+++.+.+
T Consensus 114 ~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 114 VLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp EEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred EEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 467788888865545555667777766653
No 25
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=21.29 E-value=8.8 Score=24.13 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=21.2
Q ss_pred eeeEEeecCCCCCcccCCchHHHHHHHHhhcCc
Q 040635 43 ACAIICASFDHQPEIWPSPAEAVRVLDKFNNFP 75 (177)
Q Consensus 43 va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~ 75 (177)
||+|||+|. ++|..- .++...+..|++..
T Consensus 16 VaLlvfGpk-kLP~l~---r~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGPS-KLPEIG---RAAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCTT-THHHHH---HHHHHHHHHHHHHH
T ss_pred HHhheeCcc-HhHHHH---HHHHHHHHHHHHHH
Confidence 789999997 677751 45777888887643
No 26
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.60 E-value=1.3e+02 Score=17.48 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 040635 128 NFDCLEDLKDLDHLLKEKIK 147 (177)
Q Consensus 128 ~~Ls~eeL~~l~~~Le~~l~ 147 (177)
+.|+.++..++.+.|++.+.
T Consensus 3 d~lt~eq~~aILkaLdeaIe 22 (57)
T 3fxd_A 3 DQLSDEQKETILKALNDAIE 22 (57)
T ss_dssp -CCCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 45677777777777665543
Done!