BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040637
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/470 (53%), Positives = 301/470 (64%), Gaps = 69/470 (14%)
Query: 11 EYAKYKDPKQRVAVRVKDLLGRMSLEEKIGQMVQIDRTIATVQFLKDYSIGSVLSGGGST 70
+Y YKD + V RV DLLGRM+L EKIGQM QI+R +AT L+D IGS+LSGGGS
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 71 PLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGHNNVYNATIFPHNV------- 123
P A+A +W +M++ FQ+ +++RLGIPMIYGIDAVHG NNVY ATIFPHNV
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRD 120
Query: 124 ------------------------------CRDPRWGRCYESYSEDHKIVQEMTDVILGL 153
CRDPRWGRCYESYSED +IVQ MT++I GL
Sbjct: 121 PYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGL 180
Query: 154 QGDPPSNLRKGVPYVGGKDKVAACAKHFVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSD 213
QGD P + G+P+V GK+KVAACAKHFV +I+ GL++IHMPAY +
Sbjct: 181 QGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240
Query: 214 SIIKGVSTIMVSYSSWNGEKMHANRELVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLR 273
++ KGVST+M+SYSSWNG KMHAN++LVTG+LK TLKFK
Sbjct: 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFK--------------------- 279
Query: 274 RILTLTKILEGFVISDWQGIDRITSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDLT 333
GFVISDW+GIDRIT+P S+Y+YSV++ I AG+DM+M+P +FI LT
Sbjct: 280 ----------GFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT 329
Query: 334 DLVKNNVITMDRIDDAVGRILLVKFSMGLFENPLADLSLVNELGSQAHRDLAREAVRKSL 393
V VI M RIDDAV RIL VKF+MGLFENP AD ++ +LG Q HRDLAREA RKSL
Sbjct: 330 GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSL 389
Query: 394 VLLKNGKNESHXXXXXXXXXXXX-XVAGSHADNLGYQCGGWTINWQGFSG 442
VLLKNGK + VAGSHADNLGYQCGGWTI WQG +G
Sbjct: 390 VLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTG 439
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 488 bits (1256), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/470 (53%), Positives = 301/470 (64%), Gaps = 69/470 (14%)
Query: 11 EYAKYKDPKQRVAVRVKDLLGRMSLEEKIGQMVQIDRTIATVQFLKDYSIGSVLSGGGST 70
+Y YKD + V RV DLLGRM+L EKIGQM QI+R +AT L+D IGS+LSGGGS
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 71 PLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGHNNVYNATIFPHNV------- 123
P A+A +W +M++ FQ+ +++RLGIPMIYGIDAVHG NNVY ATIFPHNV
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRD 120
Query: 124 ------------------------------CRDPRWGRCYESYSEDHKIVQEMTDVILGL 153
CRDPRWGRCYESYSED +IVQ MT++I GL
Sbjct: 121 PYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGL 180
Query: 154 QGDPPSNLRKGVPYVGGKDKVAACAKHFVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSD 213
QGD P + G+P+V GK+KVAACAKHFV +I+ GL++IHMPAY +
Sbjct: 181 QGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240
Query: 214 SIIKGVSTIMVSYSSWNGEKMHANRELVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLR 273
++ KGVST+M+SYSSWNG KMHAN++LVTG+LK TLKFK
Sbjct: 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFK--------------------- 279
Query: 274 RILTLTKILEGFVISDWQGIDRITSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDLT 333
GFVISDW+GIDRIT+P S+Y+YSV++ I AG+DM+M+P +FI LT
Sbjct: 280 ----------GFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT 329
Query: 334 DLVKNNVITMDRIDDAVGRILLVKFSMGLFENPLADLSLVNELGSQAHRDLAREAVRKSL 393
V VI M RIDDAV RIL VKF+MGLFENP AD ++ +LG Q HRDLAREA RKSL
Sbjct: 330 GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSL 389
Query: 394 VLLKNGKNESHXXXXXXXXXXXX-XVAGSHADNLGYQCGGWTINWQGFSG 442
VLLKNGK + VAGSHADNLGYQCGGWTI WQG +G
Sbjct: 390 VLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTG 439
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 226/476 (47%), Gaps = 96/476 (20%)
Query: 16 KDPKQRVAVRVKDLLGRMSLEEKIGQMVQIDRTIATVQFLKDYSIGSVLSGGGSTPL--P 73
+DP V +++ LL +M++E+K+ QM+Q + TV+ ++ Y GS L+GG + P
Sbjct: 18 RDPA--VEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYGNK 75
Query: 74 QASAADWINMINDFQRGSLASRL---GIPMIYGIDAVHGHNNVYNATIFPHN-------- 122
+A A W+ ++ ++ S L IP ++G DA+HGH+NVY AT+FPHN
Sbjct: 76 RADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAARD 135
Query: 123 -----------------------------VCRDPRWGRCYESYSEDHKIVQEMT-DVILG 152
V RD RWGR YESYSED +V+ +++ G
Sbjct: 136 TDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTG 195
Query: 153 LQGDPPSNLRKGVPYVGGKDKVAACAKHFVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYS 212
+QGD G ++ G +++A AKHFV +ID GL IH Y
Sbjct: 196 IQGD------VGADFLKGSNRIA-TAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYF 248
Query: 213 DSIIKGVSTIMVSYSSWNGEKMHANRELVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDL 272
+I +GV ++M S++SWNG+++H ++ L+T LK L F
Sbjct: 249 SAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGF--------------------- 287
Query: 273 RRILTLTKILEGFVISDWQGIDRITSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDL 332
+GFV+SDW + + Q+ I AG+D++M+P + F +
Sbjct: 288 ----------DGFVVSDWNAHKFVEG---CDLEQCAQA-INAGVDVIMVPEHFEAFYHNT 333
Query: 333 TDLVKNNVITMDRIDDAVGRILLVKFSMGLFENPLADLSLVNE----LGSQAHRDLAREA 388
VK VI RI+DAV R L K G+F ++ LG+ HR LAREA
Sbjct: 334 VKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREA 393
Query: 389 VRKSLVLLKNGKNESHXXXXXXXXXXXXXVAGSHADNLGYQCGGWTINWQGFSGNN 444
VRKSLVLLKN NES VAG A+ + Q GGW+++WQG N
Sbjct: 394 VRKSLVLLKN--NES---ILPIKASSRILVAGKGANAINMQAGGWSVSWQGTDNTN 444
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 226/476 (47%), Gaps = 96/476 (20%)
Query: 16 KDPKQRVAVRVKDLLGRMSLEEKIGQMVQIDRTIATVQFLKDYSIGSVLSGGGSTPL--P 73
+DP V +++ LL +M++E+K+ QM+Q + TV+ ++ Y GS L+GG + P
Sbjct: 18 RDPA--VEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYGNK 75
Query: 74 QASAADWINMINDFQRGSLASRL---GIPMIYGIDAVHGHNNVYNATIFPHN-------- 122
+A A W+ ++ ++ S L IP ++G DA+HGH+NVY AT+FPHN
Sbjct: 76 RADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAARD 135
Query: 123 -----------------------------VCRDPRWGRCYESYSEDHKIVQEMT-DVILG 152
V RD RWGR YESYSED +V+ +++ G
Sbjct: 136 TDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTG 195
Query: 153 LQGDPPSNLRKGVPYVGGKDKVAACAKHFVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYS 212
+QGD G ++ G +++A AKHFV +ID GL IH Y
Sbjct: 196 IQGD------VGADFLKGSNRIA-TAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYF 248
Query: 213 DSIIKGVSTIMVSYSSWNGEKMHANRELVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDL 272
+I +GV ++M S++SWNG+++H ++ L+T LK L F
Sbjct: 249 SAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGF--------------------- 287
Query: 273 RRILTLTKILEGFVISDWQGIDRITSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDL 332
+GFV+SDW + + Q+ I AG+D++M+P + F +
Sbjct: 288 ----------DGFVVSDWNAHKFVEG---CDLEQCAQA-INAGVDVIMVPEHFEAFYHNT 333
Query: 333 TDLVKNNVITMDRIDDAVGRILLVKFSMGLFENPLADLSLVNE----LGSQAHRDLAREA 388
VK VI RI+DAV R L K G+F ++ LG+ HR LAREA
Sbjct: 334 VKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREA 393
Query: 389 VRKSLVLLKNGKNESHXXXXXXXXXXXXXVAGSHADNLGYQCGGWTINWQGFSGNN 444
VRKSLVLLKN NES VAG A+ + Q GGW+++WQG N
Sbjct: 394 VRKSLVLLKN--NES---ILPIKASSRILVAGKGANAINMQAGGWSVSWQGTDNTN 444
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 70/284 (24%)
Query: 122 NVCRDPRWGRCYESYSEDHKIVQEMTDVILGLQGDPPSNLRKGVPYVGGKDKVAACAKHF 181
N+ R+P GR +E YSED + EM S+ KGV G V AC KHF
Sbjct: 121 NIHRNPLCGRNFEYYSEDPVLSGEMA-----------SSFVKGVQSQG----VGACIKHF 165
Query: 182 VXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVS-TIMVSYSSWNGEKMHANREL 240
V ++ L I++ + ++ K ++M +Y+ NG+ N L
Sbjct: 166 V-ANNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWL 224
Query: 241 VTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSPP 300
L+++L EGFV+SDW D
Sbjct: 225 -------------------------------LKKVLREEWGFEGFVMSDWYAGDNPV--- 250
Query: 301 HSNYTYSVQSGIQAGIDMVM------IPFNLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
++AG D++M + + I+++ + +K ++ + +D+ V IL
Sbjct: 251 ---------EQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNIL 301
Query: 355 LVKFSMGLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKN 398
V + F+N N+ + H +A EA + +VLL+N
Sbjct: 302 KVLVNAPSFKN----YRYSNKPDLEKHAKVAYEAGAEGVVLLRN 341
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 70/284 (24%)
Query: 122 NVCRDPRWGRCYESYSEDHKIVQEMTDVILGLQGDPPSNLRKGVPYVGGKDKVAACAKHF 181
N+ R+P GR +E YSED + EM S+ KGV G V AC KHF
Sbjct: 121 NIHRNPLCGRNFEYYSEDPVLSGEMA-----------SSFVKGVQSQG----VGACIKHF 165
Query: 182 VXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVS-TIMVSYSSWNGEKMHANREL 240
V ++ L I++ + ++ K ++M +Y+ NG+ N L
Sbjct: 166 V-ANNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWL 224
Query: 241 VTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSPP 300
L+++L EGFV+S W D
Sbjct: 225 -------------------------------LKKVLREEWGFEGFVMSAWYAGDNPV--- 250
Query: 301 HSNYTYSVQSGIQAGIDMVM------IPFNLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
++AG D++M + + I+++ + +K ++ + +D+ V IL
Sbjct: 251 ---------EQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNIL 301
Query: 355 LVKFSMGLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKN 398
V + F+N N+ + H +A EA + +VLL+N
Sbjct: 302 KVLVNAPSFKN----YRYSNKPDLEKHAKVAYEAGAEGVVLLRN 341
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 96/282 (34%), Gaps = 61/282 (21%)
Query: 122 NVCRDPRWGRCYESYSEDHKIVQEMTDV--ILGLQGDPPSNLRKGVPYVGGKDKVAACAK 179
N R P GR YE++SED +V T V I G+QG + AK
Sbjct: 154 NNIRVPHGGRNYETFSED-PLVSSRTAVAQIKGIQGA----------------GLMTTAK 196
Query: 180 HFVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVSTIMVSYSSWNGEKMHANRE 239
HF V D L I PA+ S G ++ M +Y+ NG+ N E
Sbjct: 197 HFAANNQENNRFSVNANV-DEQTLREIEFPAFEASSKAGAASFMCAYNGLNGKPSCGNDE 255
Query: 240 LVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDW---QGIDRI 296
L+ L+ F +G+V+SDW G D I
Sbjct: 256 LLNNVLRTQWGF-------------------------------QGWVMSDWLATPGTDAI 284
Query: 297 TSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDLTDLVKNNVITMDRIDDAVGRILLV 356
T + + G F F + L V N + + + RI+
Sbjct: 285 TKGLDQEMGVELPGDVPKGEPSPPAKF----FGEALKTAVLNGTVPEAAVTRSAERIVGQ 340
Query: 357 KFSMGLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKN 398
GL A ++ G+QA ++R+ VLL+N
Sbjct: 341 MEKFGLLLATPAPRPERDKAGAQA---VSRKVAENGAVLLRN 379
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 109/291 (37%), Gaps = 76/291 (26%)
Query: 122 NVCRDPRWGRCYESYSEDHKIVQEMT-DVILGLQGDPPSNLRKGVPYVGGKDKVAACAKH 180
N+ R P GR +ES+SED + T V+ G+QG + +AA KH
Sbjct: 104 NMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQG----------------EGIAATVKH 147
Query: 181 FVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVST-IMVSYSSWNGEKMHANRE 239
FV ++ L I++ + ++ IM +Y+ NGE +++
Sbjct: 148 FV-CNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKK 206
Query: 240 LVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSP 299
L+ L+ K+ +G ++SDW G
Sbjct: 207 LLIDILRDEWKW-------------------------------DGMLMSDWFG------- 228
Query: 300 PHSNYTYSVQSGIQAGIDMVMIPFNLTEFIDDLT--DLVKNNVITMDRIDDAVGRIL-LV 356
TY+ + I+ G+D + P L L IT + +DD V ++L ++
Sbjct: 229 -----TYTTAAAIKNGLD-IEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMI 282
Query: 357 KF------SMGLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKNGKN 401
KF G+ EN S ++ DL R+ S+VLLKN N
Sbjct: 283 KFVVDNLEKTGIVENGPESTS----NNTKETSDLLRKIAADSIVLLKNKNN 329
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 101/281 (35%), Gaps = 64/281 (22%)
Query: 125 RDPRWGRCYESYSEDHKIVQEMTDVILGLQGDPPSNLRKGVPYVGGKDKVAACAKHFVXX 184
+ P+ GR +E + D +T + +G G+ VG V A AKH++
Sbjct: 120 KTPQGGRNWEGFGVD----PYLTGIAMG-------QTINGIQSVG----VQATAKHYILN 164
Query: 185 XXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVSTIMVSYSSWNGEKMHANRELVTGF 244
D L ++ ++D++ V+++M SY+ N ++ +
Sbjct: 165 EQELNRETISSNP-DDRTLHELYTWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTV 223
Query: 245 LKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSPPHSNY 304
LK L F G+V++DW N
Sbjct: 224 LKDQLGFP-------------------------------GYVMTDW------------NA 240
Query: 305 TYSVQSGIQAGIDMVM--IPFNLTEFI--DDLTDLVKNNVITMDRIDDAVGRILLVKFSM 360
++ +G+DM M FN + LT+ V +N + R+DD V RIL +
Sbjct: 241 QHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLT 300
Query: 361 GLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKNGKN 401
G + ++ + H+ R R +VLLKN N
Sbjct: 301 GQDQAGYPSFNISRNVQGN-HKTNVRAIARDGIVLLKNDAN 340
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 101/281 (35%), Gaps = 64/281 (22%)
Query: 125 RDPRWGRCYESYSEDHKIVQEMTDVILGLQGDPPSNLRKGVPYVGGKDKVAACAKHFVXX 184
+ P+ GR +E + D +T + +G G+ VG V A AKH++
Sbjct: 119 KTPQGGRNWEGFGVD----PYLTGIAMG-------QTINGIQSVG----VQATAKHYILN 163
Query: 185 XXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVSTIMVSYSSWNGEKMHANRELVTGF 244
D L ++ ++D++ V+++M SY+ N ++ +
Sbjct: 164 EQELNRETISSNP-DDRTLHELYTWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTV 222
Query: 245 LKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSPPHSNY 304
LK L F G+V++DW N
Sbjct: 223 LKDQLGFP-------------------------------GYVMTDW------------NA 239
Query: 305 TYSVQSGIQAGIDMVM--IPFNLTEFI--DDLTDLVKNNVITMDRIDDAVGRILLVKFSM 360
++ +G+DM M FN + LT+ V +N + R+DD V RIL +
Sbjct: 240 QHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLT 299
Query: 361 GLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKNGKN 401
G + ++ + H+ R R +VLLKN N
Sbjct: 300 GQDQAGYPSFNISRNVQGN-HKTNVRAIARDGIVLLKNDAN 339
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 284 GFVISDWQGIDRITSPPHSNYTYSVQSGIQAGIDMVMIPFNLTEF---------IDDLTD 334
G +++D + I H +V ++AG+D+ ++P ++T I L +
Sbjct: 313 GVIVTDALNMKAIAD--HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKE 370
Query: 335 LVKNNVITMDRIDDAVGRILLVKFSMGLFENPLADLS------LVNELGSQAHRDLAREA 388
VKN I +I+++V RI+ +K G++ +D + +GS+ H ++
Sbjct: 371 AVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKL 430
Query: 389 VRKSLVLLKN 398
K++ +LKN
Sbjct: 431 AEKAVTVLKN 440
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 301 HSNYTYSVQSGIQAGIDMVMIPFNLTEF---------IDDLTDLVKNNVITMDRIDDAVG 351
H +V ++AG+D+ ++P ++T I L + VKN I +I+++V
Sbjct: 332 HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVE 391
Query: 352 RILLVKFSMGLFENPLADLS------LVNELGSQAHRDLAREAVRKSLVLLKN 398
RI+ +K G++ +D + +GS+ H ++ K++ +LKN
Sbjct: 392 RIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKN 444
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 301 HSNYTYSVQSGIQAGIDMVMIPFNLTEF---------IDDLTDLVKNNVITMDRIDDAVG 351
H +V ++AG+D+ ++P ++T I L + VKN I +I+++V
Sbjct: 302 HFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVE 361
Query: 352 RILLVKFSMGLFENPLADLS------LVNELGSQAHRDLAREAVRKSLVLLKN 398
RI+ +K G++ +D + +GS+ H ++ K++ +LKN
Sbjct: 362 RIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKN 414
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 103/290 (35%), Gaps = 74/290 (25%)
Query: 122 NVCRDPRWGRCYESYSEDHKIVQEMT-DVILGLQGDPPSNLRKGVPYVGGKDKVAACAKH 180
N R P GR +ES+SED + T V+ G QG + +AA KH
Sbjct: 104 NXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQG----------------EGIAATVKH 147
Query: 181 FVXXXXXXXXXXXXXXVIDMHGLLSIHMPAYSDSIIKGVST-IMVSYSSWNGEKMHANRE 239
FV ++ L I++ + ++ I +Y+ NGE +++
Sbjct: 148 FV-CNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKK 206
Query: 240 LVTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSP 299
L+ L+ K+ +G + SDW G
Sbjct: 207 LLIDILRDEWKW-------------------------------DGXLXSDWFG------- 228
Query: 300 PHSNYTYSVQSGIQAGIDMVMI-PFNLTEFIDDLTDLVKNNVITMDRIDDAVGRIL-LVK 357
TY+ + I+ G+D+ P L IT + +DD V ++L +K
Sbjct: 229 -----TYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIK 283
Query: 358 F------SMGLFENPLADLSLVNELGSQAHRDLAREAVRKSLVLLKNGKN 401
F G+ EN S ++ DL R+ S+VLLKN N
Sbjct: 284 FVVDNLEKTGIVENGPESTS----NNTKETSDLLRKIAADSIVLLKNKNN 329
>pdb|1UKC|A Chain A, Crystal Structure Of Aspergillus Niger Esta
pdb|1UKC|B Chain B, Crystal Structure Of Aspergillus Niger Esta
Length = 522
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 23/84 (27%)
Query: 46 DRTIATVQFLKDYSIGSVLSGGGSTPLPQASAADWI------------NMINDFQRGSLA 93
++ IAT+Q + GS GG S+PLP DW + N F G+
Sbjct: 259 EQDIATIQ---KGNTGSPFPGGSSSPLP-----DWYFLPVTDGSLVPDELYNAFDAGNF- 309
Query: 94 SRLGIPMIYGIDAVHGHNNVYNAT 117
+ +P++ G D G N YNA+
Sbjct: 310 --IKVPVLVGDDTDEGSNFAYNAS 331
>pdb|1IL6|A Chain A, Human Interleukin-6, Nmr, Minimized Average Structure
pdb|2IL6|A Chain A, Human Interleukin-6, Nmr, 32 Structures
Length = 185
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 241 VTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSP- 299
+ + G L+F+V ++ ++ +R+ +S R + TK+L F+ + +D IT+P
Sbjct: 85 LVKIITGLLEFEV---YLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPD 141
Query: 300 PHSNYTYSVQSGIQA 314
P +N S+ + +QA
Sbjct: 142 PTTN--ASLLTKLQA 154
>pdb|1ALU|A Chain A, Human Interleukin-6
Length = 186
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 241 VTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSP- 299
+ + G L+F+V ++ ++ +R+ +S R + TK+L F+ + +D IT+P
Sbjct: 86 LVKIITGLLEFEV---YLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPD 142
Query: 300 PHSNYTYSVQSGIQA 314
P +N S+ + +QA
Sbjct: 143 PTTN--ASLLTKLQA 155
>pdb|1P9M|B Chain B, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 186
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 241 VTGFLKGTLKFKVTFHFVFFILHRYNTSTSDLRRILTLTKILEGFVISDWQGIDRITSP- 299
+ + G L+F+V ++ ++ +R+ +S R + TK+L F+ + +D IT+P
Sbjct: 86 LVKIITGLLEFEV---YLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPD 142
Query: 300 PHSNYTYSVQSGIQA 314
P +N S+ + +QA
Sbjct: 143 PTTN--ASLLTKLQA 155
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 52 VQFLKDYSIGSVLSGGGSTPLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGHN 111
V+ D +VL G PL A+ DW + LA L I ++ GIDA H
Sbjct: 308 VELRVDADARAVLEAAGVGPLVDATDEDW-------RTEYLAPVLAIKIVDGIDAAIEHI 360
Query: 112 NVYNA 116
N Y +
Sbjct: 361 NEYGS 365
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 300 PHSNYTYSVQSGIQAGIDMVMIPF-NLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
P T +++ IQAG+ V+IP N+ + + D K VI + RI++ + +L
Sbjct: 129 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 184
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 300 PHSNYTYSVQSGIQAGIDMVMIPF-NLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
P T +++ IQAG+ V+IP N+ + + D K VI + RI++ + +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 300 PHSNYTYSVQSGIQAGIDMVMIPF-NLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
P T +++ IQAG+ V+IP N+ + + D K VI + RI++ + +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 300 PHSNYTYSVQSGIQAGIDMVMIPF-NLTEFIDDLTDLVKNNVITMDRIDDAVGRIL 354
P T +++ IQAG+ V+IP N+ + + D K VI + RI++ + +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 DYSIGSVLSGGGSTPLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGH 110
DY + + + GG +P+ A D+ N + GS A++ G+ +H H
Sbjct: 212 DYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAH 265
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 DYSIGSVLSGGGSTPLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGH 110
DY + + + GG +P+ A D+ N + GS A++ G+ +H H
Sbjct: 212 DYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAH 265
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 DYSIGSVLSGGGSTPLPQASAADWINMINDFQRGSLASRLGIPMIYGIDAVHGH 110
DY + + + GG +P+ A D+ N + GS A++ G+ +H H
Sbjct: 212 DYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAH 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,727,932
Number of Sequences: 62578
Number of extensions: 489126
Number of successful extensions: 1188
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1152
Number of HSP's gapped (non-prelim): 50
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)