BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040638
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 199 DMKKM-IMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257
DM+K I + +E L + D Y ++G RG LL+GP GTGK+ L+ A+AN +
Sbjct: 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237
Query: 258 ELSSV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTASPYWHSP 309
S EG + +R V +A EN SI+ ++++D + A+T S
Sbjct: 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFDAQTGSDRE--- 291
Query: 310 RRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGR 369
V+RIL LL +G S+ + ++ TN D LDPALLRPGR
Sbjct: 292 --------------VQRIL--IELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGR 333
Query: 370 MDVHIH 375
+D I
Sbjct: 334 LDRKIE 339
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 36/197 (18%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
ST+D + +T K I + +E +K + + +G A +G +L+GP GTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 249 YLHFDVYDLELSSV--------EGNKHLRKVLI-ATENK-SILVVEDIDCCTELQDRSAQ 298
H D + +S EG++ +R++ + A E+ SI+ +++ID +
Sbjct: 205 --HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI------GST 256
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
S S + ML+ LLN +G +S + I+ TN D
Sbjct: 257 RVEGSGGGDSEVQRTMLE----------------LLNQLDGFETSKNIK--IIMATNRLD 298
Query: 359 RLDPALLRPGRMDVHIH 375
LDPALLRPGR+D I
Sbjct: 299 ILDPALLRPGRIDRKIE 315
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD + +T+ + + + +E LK + ++RVG +G LL+GP GTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 250 LHFDVYDLELSSV------EGNKHLRKVLI-ATENKS-ILVVEDIDCCTELQDRSAQART 301
+ + S + E + +R++ A E++ I+ ++++D R ++ +
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG--GRRFSEGTS 296
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
A +L+ Q ++ F L T I+ TN D LD
Sbjct: 297 ADREIQRTLMELLTQ-----------MDGFDNLGQTK-----------IIMATNRPDTLD 334
Query: 362 PALLRPGRMDVHIHMSYCTLCG----FKI 386
PALLRPGR+D + + G FKI
Sbjct: 335 PALLRPGRLDRKVEIPLPNEAGRLEIFKI 363
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 77/184 (41%), Gaps = 34/184 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + R+G +G LL GP GTGK+ L A+A + H D +EL G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTAS-PYWHSPRRDLMLQIRNLI 321
+R + + + I+ +++ID + R A H R + Q
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAV-------GRHRGAGLGGGHDEREQTLNQ----- 141
Query: 322 LFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
L VE +G S G I++ TN D LDPALLRPGR D I + +
Sbjct: 142 LLVE-----------MDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 382 CGFK 385
G K
Sbjct: 189 LGRK 192
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 31/192 (16%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250
F +A + K+ +++ ++ FLK + Y +G +G LL GP GTGK+ L A+A
Sbjct: 10 FKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 251 HFDVYDLELSS-VE-----GNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
H + + SS +E G +R + + + SI+ +++ID ++R A
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI-------GKSRAA 121
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
D Q N +L ++ FG S I++ TN + LDP
Sbjct: 122 GGVVSG--NDEREQTLNQLLAE---MDGFG----------SENAPVIVLAATNRPEILDP 166
Query: 363 ALLRPGRMDVHI 374
AL+RPGR D +
Sbjct: 167 ALMRPGRFDRQV 178
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + R+G +G LL GP GTG + L A+A + H D +EL G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTAS-PYWHSPRRDLMLQIRNLI 321
+R + + + I+ +++ID + R A H R + Q
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAV-------GRHRGAGLGGGHDEREQTLNQ----- 141
Query: 322 LFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
L VE +G S G I++ TN D LDPALLRPGR D I + +
Sbjct: 142 LLVE-----------MDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 382 CGFK 385
G K
Sbjct: 189 LGRK 192
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
+TF +A + K+ + + +E +L+ ++++G +G L+ GP GTGK+ L A+A
Sbjct: 9 TTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 249 YLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQAR 300
+ + S VE G +R + + + I+ +++ID Q
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR------QRG 121
Query: 301 TASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT-TNHKDR 359
H R + Q+ ++E G G+E IIV TN D
Sbjct: 122 AGLGGGHDEREQTLNQM---------LVEMDGF----------EGNEGIIVIAATNRPDV 162
Query: 360 LDPALLRPGRMDVHIHMSYCTLCG 383
LDPALLRPGR D + + + G
Sbjct: 163 LDPALLRPGRFDRQVVVGLPDVRG 186
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 32/168 (19%)
Query: 212 LKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGN 265
LK + + +VG +G LL+GP GTGK+ L A+A N V EL EG
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 266 KHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILF 323
++ + + K SI+ +++ID A+ R
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEIDAIA--------AKRTDALTGGDRE------------ 136
Query: 324 VERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMD 371
V+R L LL +G + + GD +II TN D LDPA+LRPGR D
Sbjct: 137 VQRTL--MQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFD 180
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 54/228 (23%)
Query: 175 INHDTWQSAILDH-PSTFDTL--AMVTDMK------------KMIMDDLERF---LKRKD 216
+N D++ ILD PS FD+ AM D K K I + +E +KR D
Sbjct: 148 VNKDSY--LILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRAD 205
Query: 217 YYRRVGKAWKRGYLLFGPLGTGKSSLI---AAMANYLHFDVYDLELSSV---EGNKHLRK 270
++ +G +G L++GP GTGK+ L AA N + +L + EG K +R
Sbjct: 206 KFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRD 265
Query: 271 VLIATENK--SILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328
+ K +I+ ++++D + S + S R+ V+R +
Sbjct: 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEK---------SGDRE-----------VQRTM 305
Query: 329 ETFGLLNFTNGLWSSSGDERIIVFT-TNHKDRLDPALLRPGRMDVHIH 375
LLN +G S D+R+ V TN D LDPALLR GR+D I
Sbjct: 306 --LELLNQLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE------- 263
+LK + + ++G +G LL GP G GK+ L A+A V L ++ E
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFVEVIGG 81
Query: 264 -GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNL 320
G +R + ++ I+ +++ID + ++ T S + ++ + Q
Sbjct: 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGK-----KRSTTMSGFSNTEEEQTLNQ---- 132
Query: 321 ILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCT 380
L VE +G+ ++ D I++ +TN D LD AL+RPGR+D H+ + T
Sbjct: 133 -LLVE-----------MDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
Query: 381 L 381
L
Sbjct: 179 L 179
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 204 IMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV- 262
I + +E L + Y +G +G +L+G GTGK+ L A+AN + S +
Sbjct: 194 IKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253
Query: 263 -----EGNKHLRKVL-IATENK-SILVVEDIDCC-TELQDRSAQARTASPYWHSPRRDLM 314
+G + R++ +A EN SI+ +++ID T+ D ++
Sbjct: 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGERE------------ 301
Query: 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHI 374
++R + LLN +G + GD ++I+ TN + LDPAL+RPGR+D I
Sbjct: 302 ---------IQRTM--LELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRIDRKI 348
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 37/191 (19%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
T+ + + D+++ + + ++ D ++ +G G LL GP G GK+ L A+AN
Sbjct: 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67
Query: 250 --LHF-DVYDLELSSV---EGNKHLRKVLIATENKSILVV--EDIDC-CTELQDRSAQAR 300
L+F V EL ++ E + +R+V +N + V+ +++D C DR A
Sbjct: 68 SGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS 127
Query: 301 TASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRL 360
R++ LL +GL + + I+ TN D +
Sbjct: 128 V------------------------RVVNQ--LLTEMDGLEARQ--QVFIMAATNRPDII 159
Query: 361 DPALLRPGRMD 371
DPA+LRPGR+D
Sbjct: 160 DPAILRPGRLD 170
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
T++ + + D+K+ + + ++ ++ D + + G +G L +GP G GK+ L A+AN
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 250 LHFDVYDLELSSV------EGNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQART 301
+ ++ + E ++R++ + +L +++D A+AR
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI-------AKARG 125
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ D ++ +L +G+ S+ I+ TN D +D
Sbjct: 126 GNIGDGGGAADRVIN---------------QILTEMDGM--STKKNVFIIGATNRPDIID 168
Query: 362 PALLRPGRMDVHIHM 376
PA+LRPGR+D I++
Sbjct: 169 PAILRPGRLDQLIYI 183
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 176 NHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGP 234
N + +++ P T++ + + D+K+ + + ++ ++ D + + G +G L +GP
Sbjct: 460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP 519
Query: 235 LGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIATENKS--ILVVEDI 286
G GK+ L A+AN + ++ + E ++R++ + +L +++
Sbjct: 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579
Query: 287 DCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGD 346
D A+AR + D ++ N IL E G+ S+
Sbjct: 580 DSI-------AKARGGNIGDGGGAADRVI---NQIL-----TEMDGM---------STKK 615
Query: 347 ERIIVFTTNHKDRLDPALLRPGRMDVHIHM 376
I+ TN D +DPA+LRPGR+D I++
Sbjct: 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
H VER + + LL +GL + I++ TN + +DP
Sbjct: 317 ----HGE--------------VERRIVS-QLLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 176 NHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGP 234
N + +++ P T++ + + D+K+ + + ++ ++ D + + G +G L +GP
Sbjct: 460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP 519
Query: 235 LGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIATENKS--ILVVEDI 286
G GK+ L A+AN + ++ + E ++R++ + +L +++
Sbjct: 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579
Query: 287 DCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGD 346
D A+AR + D ++ N IL E G+ S+
Sbjct: 580 DSI-------AKARGGNIGDGGGAADRVI---NQIL-----TEMDGM---------STKK 615
Query: 347 ERIIVFTTNHKDRLDPALLRPGRMDVHIHM 376
I+ TN D +DPA+LRPGR+D I++
Sbjct: 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
H VER + + LL +GL + I++ TN + +DP
Sbjct: 317 ----HGE--------------VERRIVS-QLLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 35/153 (22%)
Query: 223 KAWKRGYLLFGPLGTGKSSL---IAAMANYLHFDVYDLELSSV---EGNKHLRKVL-IAT 275
+A RG LLFGP G GK+ L +AA +N F++ L+S EG K +R + +A
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 276 E-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334
E SI+ ++ +D L+ + R R L+T L+
Sbjct: 205 ELQPSIIFIDQVDS------------------------LLCERREGEHDASRRLKTEFLI 240
Query: 335 NFTNGLWSSSGDERIIVF-TTNHKDRLDPALLR 366
F +G+ S+GD+R++V TN LD A+LR
Sbjct: 241 EF-DGVQ-SAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 174 RINHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLF 232
RI+ + + P T+ + D + + + +E L + + +G +G LL+
Sbjct: 190 RIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLY 249
Query: 233 GPLGTGKSSLIAAMANYLH---FDVYDLELSSV---EGNKHLRKV--LIATENKSILVVE 284
GP GTGK+ A+AN V EL EG + +R++ + T+ I+ +
Sbjct: 250 GPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFD 309
Query: 285 DIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSS 344
+ID A+ + + +R ++ I L F R
Sbjct: 310 EIDAVG-----GARFDDGAGGDNEVQRTMLELITQLDGFDPR------------------ 346
Query: 345 GDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCG 383
G+ +++ F TN + LDPALLRPGR+D + S L G
Sbjct: 347 GNIKVM-FATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 208 LERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----------YLHFDVYD 256
+E F D+ + A ++G L+G +G GKS L+AAMA+ LHF +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 257 LELSSVEGNKHLRKVLIATENKSILVVEDIDC 288
+++ + N +++ + A +N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
H VER + + LL +GL + I++ TN + +DP
Sbjct: 317 ----HGE--------------VERRIVS-QLLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
H VER + + LL +GL + I++ TN + +DP
Sbjct: 317 ----HGE--------------VERRIVS-QLLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
H VER + + LL +GL + I++ TN + +DP
Sbjct: 317 ----HGE--------------VERRIVS-QLLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-- 248
+D + I + +E L+ ++ +G RG LL+GP GTGK+ + A+AN
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 249 -YLHFDVYDLELSSV---EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTA 302
F + E+ S E +LRK E +I+ ++++D ++++
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT------ 316
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
+ RR ++ Q LL +GL + I++ TN + +DP
Sbjct: 317 --HGEVERR-IVSQ----------------LLTLMDGLKQRA--HVIVMAATNRPNSIDP 355
Query: 363 ALLRPGRMDVHIHMSYCTLCG 383
AL R GR D + + G
Sbjct: 356 ALRRFGRFDREVDIGIPDATG 376
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 227 RGYLLFGPLGTGKSSLIAAMA----NYLHFDVYDLELSS---VEGNKHLRKVL-IATENK 278
RG LLFGP GTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 279 -SILVVEDID--CCTELQDRSAQAR 300
SI+ +++ID C + ++ S AR
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAAR 130
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 227 RGYLLFGPLGTGKSSLIAAMA----NYLHFDVYDLELSSV---EGNKHLRKVL-IATENK 278
RG LLFGP GTGKS L A+A N F + +L S E K ++ + +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 279 -SILVVEDID--CCTELQDRSAQAR 300
SI+ +++ID C + ++ S AR
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAAR 252
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + +G +G LL GP G GK+ L A+A ++ D +E+ G
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLIL 322
+R + + + I+ +++ID + R + + R+ L L
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLN----QL 142
Query: 323 FVERILETFGLLNFTNGLWSSSGDERIIVF-TTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
VE ++ F D I+V TN D LDPALLRPGR D I + +
Sbjct: 143 LVE--MDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188
Query: 382 CG 383
G
Sbjct: 189 KG 190
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + +G +G LL GP G GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLIL 322
+R + + + I+ +++ID + R + + R+ L L
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLN----QL 166
Query: 323 FVERILETFGLLNFTNGLWSSSGDERIIVF-TTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
VE ++ F D I+V TN D LDPALLRPGR D I + +
Sbjct: 167 LVE--MDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212
Query: 382 CG 383
G
Sbjct: 213 KG 214
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + +G +G LL GP G GK+ L A+A ++ D +E+ G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLIL 322
+R + + + I+ +++ID + R + + R+ L L
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLN----QL 157
Query: 323 FVERILETFGLLNFTNGLWSSSGDERIIVF-TTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
VE ++ F D I+V TN D LDPALLRPGR D I + +
Sbjct: 158 LVE--MDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203
Query: 382 CG 383
G
Sbjct: 204 KG 205
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN-----YLHFDVYD-LELSSVEG 264
FLK + +G +G LL GP G GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLIL 322
+R + + + I+ +++ID + R + + R+ L L
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAV-------GRKRGSGVGGGNDEREQTLN----QL 166
Query: 323 FVERILETFGLLNFTNGLWSSSGDERIIVF-TTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
VE ++ F D I+V TN D LDPALLRPGR D I + +
Sbjct: 167 LVE--MDGF------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212
Query: 382 CG 383
G
Sbjct: 213 KG 214
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 39/238 (16%)
Query: 184 ILDH--PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKS- 240
I+DH P ++ +A V K I + + + R D + + + +G LLFGP GTGK+
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL 132
Query: 241 --SLIAAMANYLHFDVYDLELSS---VEGNKHLRKVLIAT--ENKSILVVEDIDCCTELQ 293
IA+ + F + L+S EG K +R + + +++ +++ID + L
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEID--SLLS 190
Query: 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353
R +S R ++T L+ +G +SS D ++V
Sbjct: 191 QRGDGEHESS----------------------RRIKTEFLVQL-DGATTSSEDRILVVGA 227
Query: 354 TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF-SEVEELIEQT 410
TN +D A R R+ +++ K + N + + L E+E++++Q+
Sbjct: 228 TNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS 283
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 228 GYLLFGPLGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 279
G LL+GP GTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 280 ILVVEDIDCCT 290
I+ ++++D T
Sbjct: 122 IIFIDEVDALT 132
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 228 GYLLFGPLGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 279
G LL+GP GTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 280 ILVVEDIDCCT 290
I+ ++ +D T
Sbjct: 146 IIFIDQVDALT 156
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 228 GYLLFGPLGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 279
G LL+GP GTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 280 ILVVEDIDCCT 290
I+ ++ +D T
Sbjct: 113 IIFIDQVDALT 123
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 228 GYLLFGPLGTGKSSL---IAAMANYLHFDVYDLELSS---VEGNKHLRKVL-IATENK-S 279
G LL+GP GTGKS L +A AN F V +L S E K ++++ +A ENK S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 280 ILVVEDIDCCT 290
I+ ++ +D T
Sbjct: 131 IIFIDQVDALT 141
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 224 AWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYD 256
A KR L GP+G GKS++ +A L+ + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 212 LKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVY 255
L + ++RV + L+ GP G+GKS+ +AAM +YL+ Y
Sbjct: 109 LGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 223 KAWKRGYLLFGPLGTGKSSLIAAM-----ANYLHFDVYDLELSSVEGNKHLRKVLIATE- 276
+A +G LLFGP G GK+ L A+ A +L+ L V + L + L A
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 277 --NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334
SI+ ++++D + S + R L+T L+
Sbjct: 111 HMQPSIIFIDEVDSLLSERSSSEHEAS------------------------RRLKTEFLV 146
Query: 335 NFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394
F + GD +++ TN LD A LR R +++S ++L + L
Sbjct: 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQK 204
Query: 395 TEHPLFSEV 403
PL +E
Sbjct: 205 QGSPLDTEA 213
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 230 LLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL-IATEN-----KSILVV 283
+L+GP GTGK++L +A Y + DV + + G K +R+ + A +N ++IL V
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERIS-AVTSGVKEIREAIERARQNRNAGRRTILFV 112
Query: 284 EDI 286
+++
Sbjct: 113 DEV 115
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 21 IQSYARQYLPDE-VSSYFDQKFK-------NFIARIYSELTLVIEEYDD------GLNRN 66
+ S+ RQYLP+ SY D +FK NF+ + ++I + D L +
Sbjct: 119 VVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTS 178
Query: 67 KLFKAAKLCLEP 78
++ K CL P
Sbjct: 179 AFYEGCKRCLNP 190
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 185 LDHPSTFDTLAMVTD-----MKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGK 239
L P T +T A++T + I L+ ++ + VG+ + G LF G GK
Sbjct: 113 LPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG--LFAGSGVGK 170
Query: 240 SSLIAAMANYLHFDVYDLELSSVEGNK 266
S L+ MA Y DV + L G +
Sbjct: 171 SVLLGMMARYTRADVIVVGLIGERGRE 197
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG 264
G L+FG GTGKS+ + A+A L E+ +VEG
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALLP------EIEAVEG 77
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 209 ERFLKRKDYYRRVGKAWKRGY---LLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265
ER ++ Y KA K LLFGP G GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 266 KHLRKVLI-ATENKSILVVEDI 286
L +L + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 214 RKDYYRRVGKAWK---RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262
+K+ ++ GK R +L+GP G GK++ +A L +D+ + S V
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 230 LLFGPLGTGKSSLIAAMANYLH 251
L+ GP G+GKS+ IA+M +Y++
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 209 ERFLKRKDYYRRVGKAWKRGY---LLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265
ER ++ Y KA K LLFGP G GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 266 KHLRKVLI-ATENKSILVVEDI 286
L +L + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 226 KRGYLLFGPLGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVL 272
KRG +L GP G+GK+ ++ A+ N +DV + S +H+ L
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSAL 1095
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 226 KRGYLLFGPLGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVL 272
KRG +L GP G+GK+ ++ A+ N +DV + S +H+ L
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSAL 1314
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 209 ERFLKRKDYYRRVGKAWKRGY---LLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265
ER ++ Y KA K LLFGP G GK++L +A+ L ++ ++E
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 266 KHLRKVLI-ATENKSILVVEDI 286
L +L + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,584,513
Number of Sequences: 62578
Number of extensions: 455780
Number of successful extensions: 1777
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 85
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)