BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040638
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 33/200 (16%)
Query: 187 HPSTFDTLAMV---TDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLI 243
HP + L+ V +++KKMI DD+ FL+ +Y G ++RGYLL+GP G+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259
Query: 244 AAMANYLHFDVYDLELSSVEG--NKHLRKVLIATENKSILVVEDIDCCTELQDRSAQART 301
A+A L +D+ L L+ +G + L +L K+++++ED+D + ++RS +
Sbjct: 260 YALAGELDYDICVLNLAE-KGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGE--- 315
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETF-GLLNFTNGLWSSSGDERIIVFTTNHKDRL 360
+ F + TF GLLN +G+ SS DERII TTNH ++L
Sbjct: 316 -------------------VGFHANV--TFSGLLNALDGVTSS--DERIIFMTTNHPEKL 352
Query: 361 DPALLRPGRMDVHIHMSYCT 380
DPAL+RPGR+DV ++ T
Sbjct: 353 DPALVRPGRVDVKAYLGNAT 372
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 152/298 (51%), Gaps = 21/298 (7%)
Query: 133 NNGNY--IIKETVLGT---YIPHILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDH 187
N+GN I T LGT ++++++KE++ +K+ K +S + W+ H
Sbjct: 145 NSGNLWESITLTTLGTGRQVFQNLIEEAKEMALEKEEGKTLIYTSMGTD---WRR--FGH 199
Query: 188 PS---TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIA 244
P ++ + ++I+ D+++FL D+Y G ++RGYLL+GP GTGKSS I
Sbjct: 200 PRRKRPISSVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFIT 259
Query: 245 AMANYLHFDVYDLELSSVE-GNKHLRKVLIATENKSILVVEDIDCC--TELQDRSAQART 301
A+A L + L L+ + L ++L +SI+++EDID T D SA++ +
Sbjct: 260 ALAGELQLSICILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNS 319
Query: 302 A-SPYWHSPRRDLMLQIRNLILFVERILETF-GLLNFTNGLWSSSGDERIIVFTTNHKDR 359
A +P S N + TF GLLN +G+ +S G RI+ TTNH ++
Sbjct: 320 ANAPSISSGGLQYQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEK 377
Query: 360 LDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQTKVTPAEV 417
LD L+RPGR+D+ I + C+ + + + T+ L + E +E K +PA++
Sbjct: 378 LDKVLIRPGRVDLQIEIGLCSSYQMEQMFLKFY-PTDFDLAKQFVEKLENYKFSPAQL 434
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 142 TVLGT---YIPHILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDHPSTFDTLAMVT 198
T LGT +IL++++EL+ K++ K T+ N + + Q ++ +
Sbjct: 138 TALGTNRNIFFNILQEARELALKQQVGK--TVMYNAVGAEWRQFGFPRRRRPLSSVVLEQ 195
Query: 199 DMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV-YDL 257
+ + I+ D++ F++ +Y G ++RGYLL+GP G GKSS I A+A L + +
Sbjct: 196 GISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMS 255
Query: 258 ELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQI 317
S + L +L +SI+++ED+D +D + Q TA Q
Sbjct: 256 LSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTA------------YQG 303
Query: 318 RNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377
+ F GLLN +G+ +S + RI+ TTNH DRLDPAL+RPGR+DV ++
Sbjct: 304 MGRLTFS-------GLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDVKQYVG 354
Query: 378 YCT 380
+CT
Sbjct: 355 HCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 25/232 (10%)
Query: 151 ILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLER 210
IL++++EL+ K++ + T+ + + ++ + + + + I+DD++
Sbjct: 150 ILQEARELALKQEEGR--TVMYTAMGAEWRPFGFPRRRRPLSSVVLESGVAERIVDDVKE 207
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-GNKHLR 269
F+ +Y G ++RGYLL+GP G GKSS I A+A L + + + LS + L
Sbjct: 208 FIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLN 267
Query: 270 KVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329
+L +SI+++ED+D ++ +L N + +
Sbjct: 268 HLLSVAPQQSIILLEDVDAAFVSRE-------------------LLPTENPLAYQGMGRL 308
Query: 330 TF-GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCT 380
TF GLLN +G+ SS + RI+ TTN +RLDPAL+RPGR+D+ ++ +C+
Sbjct: 309 TFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCS 358
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 57/333 (17%)
Query: 116 RLKWKFELKPAPDQE-LCNNGNYIIKE---------------------TVLGT---YIPH 150
R+ KFE P+P + G +I E T LGT +
Sbjct: 90 RISTKFEFVPSPGNHFIWYRGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFN 149
Query: 151 ILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLER 210
IL++++EL+ +++ K T+ + + +++ + + I+ D++
Sbjct: 150 ILEEARELALQQEEGK--TVMYTAVGSEWRPFGYPRRRRPLNSVVLQQGLADRIVRDVQE 207
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLELSSVEGNKHLR 269
F+ +Y G ++RGYLL+GP G GKSS I A+A L H S + L
Sbjct: 208 FIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLN 267
Query: 270 KVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329
+L +S++++ED+D +D L + N + +
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRD--------------------LAVENPVKYQGLGRL 307
Query: 330 TF-GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGF-KIL 387
TF GLLN +G+ +S + RI+ TTNH DRLDPAL+RPGR+D+ ++ YC+ ++
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMF 365
Query: 388 ASNYLGITEHPLFSE--VEELIEQT-KVTPAEV 417
Y G + P +E E ++ T +++PA+V
Sbjct: 366 QRFYPG--QAPSLAENFAEHVLRATNQISPAQV 396
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 21/192 (10%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
+ ++ + D+K +++D++ F+ + +YR G ++RGYLL+G G GKSSLI A+A
Sbjct: 185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGE 244
Query: 250 LHFDVYDLELSSVE-GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHS 308
L+ D+ + LSS + +K + +L KSIL++EDID +
Sbjct: 245 LNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFK----------------- 287
Query: 309 PRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPG 368
RD + N L GLLN +G+ S G RI+ TTN + LD AL+R G
Sbjct: 288 SHRD-NVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREG 344
Query: 369 RMDVHIHMSYCT 380
R+D+ I +S T
Sbjct: 345 RIDLKIKVSNAT 356
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 26/184 (14%)
Query: 198 TDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257
+ +K+ I+DD+ F+K +Y G ++RGYLL+GP G+GK+S I A+A L +++ L
Sbjct: 232 SGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICIL 291
Query: 258 ELSSVE-GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQ 316
LS + L ++ +SIL++EDID + +++T +HS
Sbjct: 292 NLSENNLTDDRLNHLMNNMPERSILLLEDIDAAF-----NKRSQTGEQGFHSS------- 339
Query: 317 IRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHM 376
+ F GLLN +G+ SS +E I TTNH ++LD A++RPGR+D + +
Sbjct: 340 ----VTFS-------GLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFV 386
Query: 377 SYCT 380
T
Sbjct: 387 GNAT 390
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 30/233 (12%)
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250
D++ + + I+ D+ F+ +Y G ++RGYLL+GP G GKSS I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 251 -HFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSP 309
H S + L +L +S++++ED+D +D
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRD--------------- 292
Query: 310 RRDLMLQIRNLILFVERILETF-GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPG 368
L + N I + TF GLLN +G+ +S + RI+ TTN+ DRLDPAL+RPG
Sbjct: 293 -----LAVENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNYIDRLDPALIRPG 345
Query: 369 RMDVHIHMSYCTLCGF-KILASNYLGITEHPLFSE--VEELIEQT-KVTPAEV 417
R+D+ ++ YC+ ++ Y G + P +E E +++ T +++PA+V
Sbjct: 346 RVDLKEYVGYCSHWQLTQMFQRFYPG--QAPSLAENFAEHVLKATSEISPAQV 396
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 53/331 (16%)
Query: 116 RLKWKFELKPAPDQE-LCNNGNYIIKE---------------------TVLGT---YIPH 150
R+ KFE P+P + G +I E T LGT +
Sbjct: 90 RISTKFEFVPSPGNHFIWYQGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFN 149
Query: 151 ILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLER 210
IL++++EL+ +++ K T+ + + +++ + + + I+ D+
Sbjct: 150 ILEEARELALQQEEGK--TVMYTAVGSEWRPFGYPRRRRPLNSVVLEQGVTERIVRDIRE 207
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV-YDLELSSVEGNKHLR 269
F+ +Y G ++RGYLL+GP G GKSS I A+A L + S + L
Sbjct: 208 FIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLN 267
Query: 270 KVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329
+L +S++++ED+D +D +A+ N I +
Sbjct: 268 HLLSVAPQQSLVLLEDVDAAFLSRDLAAE--------------------NPIKYQGLGRL 307
Query: 330 TF-GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILA 388
TF GLLN +G+ +S + RI+ TTNH DRLDPAL+RPGR+D+ ++ +C+ +
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMF 365
Query: 389 SNYLGITEHPLFSEVEELIEQ--TKVTPAEV 417
+ L + + Q T+++PA+V
Sbjct: 366 QRFYPGQATSLAENFADRVLQATTQISPAQV 396
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 7/157 (4%)
Query: 242 LIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENK-SILVVEDIDCCTE-LQDRSAQA 299
+I A++ + ++ L L++++ + L +L A K +ILV+EDIDC +E ++ R+ +
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 300 RTASPYWHSPRRDLMLQI-RNLILFVERI--LETFGLLNFTNGLWSSSGDERIIVFTTNH 356
T + L +I + + VE++ L G+LN +G+++S G RI++ TTNH
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 357 KDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393
+ LDPAL+R GR+D+ I S C + N+ G
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 33/194 (17%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
+TFD +A T+ K+ + + +E +L+ D + RVG RG LL GP GTGK+ L A+A
Sbjct: 173 TTFDEVAGQTNAKREVQELVE-YLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAG 231
Query: 249 YLHFDVYDLELSS-VE-----GNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQAR 300
+ Y + S +E G +R++ IA EN SI+ ++++D R+ A
Sbjct: 232 EAGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSVG----RTRGAG 287
Query: 301 TASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRL 360
H R + QI + E G + D I++ TN D L
Sbjct: 288 YGG--GHDEREQTLNQI---------LAEMDGF---------AGHDAVIVLAATNRPDVL 327
Query: 361 DPALLRPGRMDVHI 374
DPAL+RPGR D H+
Sbjct: 328 DPALMRPGRFDRHV 341
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 33/186 (17%)
Query: 199 DMKKM-IMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257
DM+K I + +E L + D Y+++G RG LL+GP GTGK+ L+ A+AN +
Sbjct: 172 DMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRV 231
Query: 258 ELSSV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTASPYWHSP 309
S EG + +R V +A EN +I+ +++ID + A+T +
Sbjct: 232 NGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIAT---KRFDAQTGADRE--- 285
Query: 310 RRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGR 369
V+RIL LLN +G SS + ++ TN D LDPALLRPGR
Sbjct: 286 --------------VQRIL--LELLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGR 327
Query: 370 MDVHIH 375
+D I
Sbjct: 328 LDRKIE 333
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 98/220 (44%), Gaps = 46/220 (20%)
Query: 176 NHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPL 235
NH+T D F +A V + K+ IM+ +FLK +Y R+G RG +L GP
Sbjct: 286 NHET------DIKIKFADVAGVDEAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPP 338
Query: 236 GTGKSSLIAAMANYLHFDVYDLELSSVE--------GNKHLRKVLIATENKS---ILVVE 284
GTGK+ L A A +V L +S E G +R L AT K+ I+ ++
Sbjct: 339 GTGKTLLAKATAG--EANVPFLSVSGSEFLEMFVGVGPSRVRD-LFATARKNAPCIIFID 395
Query: 285 DIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSS 344
+ID + + R Q + + R+ L L VE +G SS
Sbjct: 396 EIDAIGKARGRGGQ------FGSNDERESTLN----QLLVE-----------MDGFTSS- 433
Query: 345 GDERIIVFT-TNHKDRLDPALLRPGRMDVHIHMSYCTLCG 383
E I+VF TN D LDPALLRPGR D I + + G
Sbjct: 434 --EHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGG 471
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 176 NHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPL 235
N++ W I+ P F + T+M+ ++ D++ F++ +D YR +G ++RG LL+G
Sbjct: 152 NNNNWSYPIIRRPCKFLDSNLTTEMRS-VLKDVDVFMRNEDTYRELGANYRRGMLLYGES 210
Query: 236 GTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIA-TENKSILVVEDID 287
G GK+ LI+ ++N D Y L L+S + + + L + + +SILV+E+ID
Sbjct: 211 GCGKTGLISIISNKYGMDSYILNLNSKDMSDSVLISLASNVKARSILVIEEID 263
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 33/206 (16%)
Query: 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAA 245
D P+TF+ +A + + + + ++ FLK + Y+ +G +G LL GP GTGK+ L A
Sbjct: 245 DLPTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKA 303
Query: 246 MANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSA 297
+A + L S VE G +R + N++ I+ ++++D
Sbjct: 304 IAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL-------G 356
Query: 298 QARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK 357
++R+ S R+ L L VE +G S+SG I+V TN
Sbjct: 357 KSRSGSVVGGHDEREQTLNA----LLVE-----------MDGFDSNSG--VIVVAATNRP 399
Query: 358 DRLDPALLRPGRMDVHIHMSYCTLCG 383
+ LDPALLRPGR D H+ + + G
Sbjct: 400 ETLDPALLRPGRFDRHVLVDRPDVAG 425
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 35/253 (13%)
Query: 132 CNNGNYIIKETVLGTYIPHILKKSKELSKKKKTLKLFTLSSNRINHDTWQSAILDHPS-T 190
NY+++ +L T +LK S ++ ++ + L + + + P +
Sbjct: 75 TTGSNYVVR--ILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVS 132
Query: 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250
+ + + K+ + + +E L + D YR++G RG LL+GP GTGK+ L+ A+AN
Sbjct: 133 YADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 192
Query: 251 HFDVYDLELSSV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTA 302
+ + S EG + +R V +A EN +I+ +++ID + A+T
Sbjct: 193 AANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIAT---KRFDAQTG 249
Query: 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDP 362
+ V+RIL LL +G G ++ TN D LDP
Sbjct: 250 ADRE-----------------VQRIL--IELLTQMDGF--DQGANVKVIMATNRADTLDP 288
Query: 363 ALLRPGRMDVHIH 375
ALLRPGR+D I
Sbjct: 289 ALLRPGRLDRKIE 301
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 199 DMKKM-IMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257
DM+K I + +E L + D Y ++G RG LL+GP GTGK+ L+ A+AN +
Sbjct: 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237
Query: 258 ELSSV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTASPYWHSP 309
S EG + +R V +A EN SI+ ++++D + A+T S
Sbjct: 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFDAQTGSDRE--- 291
Query: 310 RRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGR 369
V+RIL LL +G S+ + ++ TN D LDPALLRPGR
Sbjct: 292 --------------VQRIL--IELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGR 333
Query: 370 MDVHIH 375
+D I
Sbjct: 334 LDRKIE 339
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 45/267 (16%)
Query: 129 QELCNNGNYIIKETVLGTYIPHI--------LKKSKELSKKKKTLKLFTLSSNRINHDTW 180
+E+ ++G I+K + ++ ++ L+ ++ ++++ + + + +
Sbjct: 107 EEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVL 166
Query: 181 QSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGK 239
+ + P ++D + + + + I + +E+ LK + + +VG +G LL+GP GTGK
Sbjct: 167 AMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGK 226
Query: 240 SSLIAAMANYLHFDVYDLELSSV--------EGNKHLRKVLIATENK--SILVVEDIDCC 289
+ L A+AN H D + L++ EG + +R++ K SI+ +++ID
Sbjct: 227 TLLAKAVAN--HADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAI 284
Query: 290 TELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERI 349
+ R A + V+R L LL +G D+
Sbjct: 285 GARRMRDATSGDRE--------------------VQRTLTQ--LLAEMDGF--DPLDDIK 320
Query: 350 IVFTTNHKDRLDPALLRPGRMDVHIHM 376
++ TN KD LDPALLRPGR D HI +
Sbjct: 321 VIAATNRKDILDPALLRPGRFDRHIKI 347
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 114/264 (43%), Gaps = 43/264 (16%)
Query: 130 ELCNNGNYIIKETVLGTYIPHILKK-SKELSKKKKTLKLFTLSSN-------RINHDTWQ 181
E ++ I+ T ++ IL +EL K T+ L SS ++
Sbjct: 63 EPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPV 122
Query: 182 SAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKS 240
+ PS T+ + + K+ I + +E L + D YR++G +G LL+GP GTGK+
Sbjct: 123 MGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKT 182
Query: 241 SLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIATENK--SILVVEDIDC-CTE 291
L+ A+AN+ + S EG + +R V K SI+ ++++D T+
Sbjct: 183 MLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATK 242
Query: 292 LQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIV 351
D S A V+R+L LLN +G ++ + ++
Sbjct: 243 RFDASTSADRE---------------------VQRVL--IELLNQMDGFDPAANVK--VI 277
Query: 352 FTTNHKDRLDPALLRPGRMDVHIH 375
TN D +DPALLRPGR+D I
Sbjct: 278 MATNRADTIDPALLRPGRLDRKIE 301
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAA 245
D TF +A + + K+ + +++ FLK + Y +G +G LL GP GTGK+ L A
Sbjct: 190 DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKA 248
Query: 246 MANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSA 297
+A + + L S VE G +R + + KS I+ +++ID A
Sbjct: 249 VAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGR-----A 303
Query: 298 QARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK 357
+ + A+ + R + + Q LL +G S+SG II+ TN
Sbjct: 304 RGKNANMNSNDERENTLNQ----------------LLTEMDGFGSNSG--VIILAATNRA 345
Query: 358 DRLDPALLRPGRMDVHIHM 376
D LD ALLR GR D IH+
Sbjct: 346 DILDKALLRAGRFDRQIHV 364
>sp|D1C1U7|FTSH1_SPHTD ATP-dependent zinc metalloprotease FtsH 1 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH1 PE=3
SV=1
Length = 653
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 39/232 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TF +A V + K+ +++ +E FLK D + +G RG LL GP GTGK+ L A+A
Sbjct: 161 TFADVAGVEEAKEELVEVVE-FLKYPDKFASLGARIPRGVLLVGPPGTGKTLLSRAVAGE 219
Query: 250 LHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQART 301
+ + S VE G +R + + + I+ +++ID + R A
Sbjct: 220 AGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAVG--RQRGAGLGG 277
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ H R + QI ++E G + TN I++ TN D LD
Sbjct: 278 S----HDEREQTLNQI---------LVEMDGFDSTTN---------VIVIAATNRPDVLD 315
Query: 362 PALLRPGRMDVHIHMSYCTLCGFK-ILASNYLGITEHPLFSEV--EELIEQT 410
PALLRPGR D + + + G + IL + G PL S+V EEL QT
Sbjct: 316 PALLRPGRFDRQVVLDRPDIAGRRAILEVHSRG---KPLESDVDLEELARQT 364
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 36/197 (18%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
ST+D + +T K I + +E +K + + +G A +G +L+GP GTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 249 YLHFDVYDLELSSV--------EGNKHLRKVLI-ATENK-SILVVEDIDCCTELQDRSAQ 298
H D + +S EG++ +R++ + A E+ SI+ +++ID +
Sbjct: 205 --HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI------GST 256
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
S S + ML+ LLN +G +S + I+ TN D
Sbjct: 257 RVEGSGGGDSEVQRTMLE----------------LLNQLDGFETSKNIK--IIMATNRLD 298
Query: 359 RLDPALLRPGRMDVHIH 375
LDPALLRPGR+D I
Sbjct: 299 ILDPALLRPGRIDRKIE 315
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 162 KKTLKLFTLSSNRINHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRR 220
++TL + + ++ I + P +F+ + + + + I + +E LK + + +
Sbjct: 117 QQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
Query: 221 VGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIA 274
VG +G LL+GP GTGK+ L A+A N V EL EG K +R V
Sbjct: 177 VGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKL 236
Query: 275 TENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332
+ KS I+ +++ID A RT S V+R L
Sbjct: 237 AKEKSPCIIFIDEIDAV-------ASKRTESLTGGDRE-------------VQRTL--MQ 274
Query: 333 LLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377
LL +G + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 275 LLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|B9KXV3|FTSH1_THERP ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH1 PE=3 SV=1
Length = 652
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD +A V + K+ + + +E FLK + + +G RG LL GP GTGK+ L A+A
Sbjct: 161 TFDDVAGVDEAKEELQEIVE-FLKYPEKFAALGARIPRGVLLVGPPGTGKTLLSRAVAGE 219
Query: 250 LHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQART 301
+ + S VE G +R + + + I+ +++ID + R A
Sbjct: 220 AGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAVG--RQRGAGLGG 277
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ H R + QI ++E G + TN I++ TN D LD
Sbjct: 278 S----HDEREQTLNQI---------LVEMDGFDSSTN---------VIVIAATNRPDVLD 315
Query: 362 PALLRPGRMDVHIHMSYCTLCG-FKILASNYLGITEHPLFSEV--EELIEQT 410
PALLRPGR D + + L G IL + G PL S+V E+L QT
Sbjct: 316 PALLRPGRFDRQVVLDRPDLHGRLAILKVHTRG---KPLESDVDLEDLARQT 364
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 162 KKTLKLFTLSSNRINHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRR 220
++TL + + ++ I + P +F+ + + + + I + +E LK + + +
Sbjct: 117 QQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
Query: 221 VGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIA 274
VG +G LL+GP GTGK+ L A+A N V EL EG K +R V
Sbjct: 177 VGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKL 236
Query: 275 TENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332
+ KS I+ +++ID A RT S V+R L
Sbjct: 237 AKEKSPCIIFIDEIDAV-------ASKRTESLTGGDRE-------------VQRTL--MQ 274
Query: 333 LLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377
LL +G + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 275 LLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 162 KKTLKLFTLSSNRINHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRR 220
++TL + + ++ I + P +F+ + + + + I + +E LK + + +
Sbjct: 117 QQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
Query: 221 VGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIA 274
VG +G LL+GP GTGK+ L A+A N V EL EG K +R V
Sbjct: 177 VGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKL 236
Query: 275 TENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332
+ KS I+ +++ID A RT S V+R L
Sbjct: 237 AKEKSPCIIFIDEIDAV-------ASKRTESLTGGDRE-------------VQRTL--MQ 274
Query: 333 LLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377
LL +G + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 275 LLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%)
Query: 162 KKTLKLFTLSSNRINHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRR 220
++TL + + ++ I + P +F+ + + + + I + +E LK + + +
Sbjct: 117 QQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
Query: 221 VGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFDVYDLELSSV---EGNKHLRKVLIA 274
VG +G LL+GP GTGK+ L A+A N V EL EG K +R V
Sbjct: 177 VGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKL 236
Query: 275 TENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332
+ KS I+ +++ID A RT S V+R L
Sbjct: 237 AKEKSPCIIFIDEIDAV-------ASKRTESLTGGDRE-------------VQRTL--MQ 274
Query: 333 LLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377
LL +G + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 275 LLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD +A V + K+ M+ +E FLK+ + + VG +G LL GP GTGK+ L A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 250 LHFDVYDLELSS-VE-----GNKHLRKVLI-ATENKSILV-VEDIDCCTELQDRSAQART 301
+ + S VE G +R + A EN +V V++ID Q T
Sbjct: 284 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR------QRGT 337
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ R + Q LL +G ++G I+V TN D LD
Sbjct: 338 GIGGGNDEREQTLNQ----------------LLTEMDGFEGNTG--VIVVAATNRADILD 379
Query: 362 PALLRPGRMDVHIHMSYCTLCG----FKILASN 390
ALLRPGR D + + + G K+ A N
Sbjct: 380 SALLRPGRFDRQVSVDVPDVKGRTDILKVHAGN 412
>sp|P46508|YME1_SCHMA ATP-dependent zinc metalloprotease YME1 homolog OS=Schistosoma
mansoni PE=2 SV=1
Length = 662
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN- 248
+F + ++KK ++D +E FL+ + + ++G +G LL GP G GK+ L A++
Sbjct: 164 SFSDVQGCDEVKKELVDVVE-FLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGE 222
Query: 249 ------YLHFDVYDLELSSVEGNKHLRKVLIATENKSILV-VEDIDCCTELQDRSAQART 301
Y +D L + ++ + A +N LV +++ID RT
Sbjct: 223 AQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV-------GGNRT 275
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
SP H P F + + LL +G S G I++ TN + LD
Sbjct: 276 FSP--HHP-------------FANQTINQ--LLAEMDGFQSKEG--IIVLGATNQAEVLD 316
Query: 362 PALLRPGRMDVHIHMSYCTLCGFKILASNYL 392
ALLRPGR DV IH+S T G L + YL
Sbjct: 317 KALLRPGRFDVQIHVSPPTYEGRIALLNLYL 347
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 35/196 (17%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
ST+D + + K I + +E +K + + +G A +G LL+GP GTGK+ L A+A+
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 249 YLHFDVYDLELSSV--------EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQ 298
H D + +S EG++ +R++ + SI+ +++ID SA+
Sbjct: 218 --HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG-----SAR 270
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
+ S S + ML+ LLN +G +S+ + ++ TN D
Sbjct: 271 MESGSGNGDSEVQRTMLE----------------LLNQLDGFEASNKIK--VLMATNRID 312
Query: 359 RLDPALLRPGRMDVHI 374
LD ALLRPGR+D I
Sbjct: 313 ILDQALLRPGRIDRKI 328
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 35/196 (17%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
ST+D + + K I + +E +K + + +G A +G LL+GP GTGK+ L A+A+
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 249 YLHFDVYDLELSSV--------EGNKHLRKVLI-ATENK-SILVVEDIDCCTELQDRSAQ 298
H D + +S EG++ +R++ + A E+ SI+ +++ID SA+
Sbjct: 218 --HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG-----SAR 270
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
+ S S + ML+ LLN +G +S+ + ++ TN D
Sbjct: 271 MESGSGNGDSEVQRTMLE----------------LLNQLDGFEASNKIK--VLMATNRID 312
Query: 359 RLDPALLRPGRMDVHI 374
LD ALLRPGR+D I
Sbjct: 313 ILDQALLRPGRIDRKI 328
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD +A V + K+ M+ +E FLK+ + + VG +G LL GP GTGK+ L A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 250 LHFDVYDLELSS-VE-----GNKHLRKVLI-ATENKSILV-VEDIDCCTELQDRSAQART 301
+ + S VE G +R + A EN +V V++ID Q T
Sbjct: 277 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR------QRGT 330
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ R + Q LL +G ++G I+V TN D LD
Sbjct: 331 GIGGGNDEREQTLNQ----------------LLTEMDGFEGNTG--VIVVAATNRADILD 372
Query: 362 PALLRPGRMDVHIHMSYCTLCG 383
ALLRPGR D + + + G
Sbjct: 373 SALLRPGRFDRQVSVDVPDVKG 394
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD +A ++K+ + D ++ +L+ + +RR+G RG LL GP GTGK+ L A+A
Sbjct: 158 TFDDVAGAEEVKEEVADIVD-YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGE 216
Query: 250 LHFDVYD------LELSSVEGNKHLRKVLI-ATENK-SILVVEDIDCCTELQDRSAQART 301
+ +EL G +R++ A EN +I+ +++ID + R Q
Sbjct: 217 ARASFFSVSGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRMEQ--- 273
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+S Y Q N IL +E G T ++V TN D LD
Sbjct: 274 SSEYD---------QTLNQIL-----VEMDGFEERTT---------VVVVAATNRVDILD 310
Query: 362 PALLRPGRMD 371
PALLRPGR D
Sbjct: 311 PALLRPGRFD 320
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAA 245
+ P TF +A + ++K ++++ +LK D YR +G +G LL+GP GTGK+ L A
Sbjct: 146 ESPVTFADVAGMDEVKGE-LEEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARA 204
Query: 246 MANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSA 297
+A + L SS VE G +R++ + I+ +++ID + R +
Sbjct: 205 VAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDAVG--RQRGS 262
Query: 298 QARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK 357
A H R + Q LL +G + G I++ TN
Sbjct: 263 AAVVGG---HDEREQTLNQ----------------LLTEMDGFGAYEG--VIVMAATNRP 301
Query: 358 DRLDPALLRPGRMDVHIHMSYCTLCG 383
D LD ALLRPGR D I + G
Sbjct: 302 DVLDKALLRPGRFDRQIPVGPPDAAG 327
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TFD +A V + K+ M+ +E FLK+ + + VG +G LL GP GTGK+ L A+A
Sbjct: 212 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 270
Query: 250 LHFDVYDLELSS-VE-----GNKHLRKVLI-ATENKSILV-VEDIDCCTELQDRSAQART 301
+ + S VE G +R + A EN +V V++ID Q T
Sbjct: 271 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR------QRGT 324
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+ R + Q LL +G ++G I++ TN D LD
Sbjct: 325 GIGGGNDEREQTLNQ----------------LLTEMDGFEGNTG--IIVIAATNRADILD 366
Query: 362 PALLRPGRMDVHIHMSYCTLCG----FKILASN 390
ALLRPGR D + + + G K+ SN
Sbjct: 367 SALLRPGRFDRQVSVDVPDVRGRTEILKVHGSN 399
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 35/196 (17%)
Query: 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248
+T++ + + + K I + +E +K + + +G A +G +++GP GTGK+ L A+A+
Sbjct: 153 ATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAH 212
Query: 249 YLHFDVYDLELSSV--------EGNKHLRKVLI-ATENK-SILVVEDIDCCTELQDRSAQ 298
H D + +S EG+K +R++ + A E+ SI+ +++ID + +
Sbjct: 213 --HTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGK 270
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
S + ML+ LLN +G S+ + I+ TN D
Sbjct: 271 GGGDSEVQRT-----MLE----------------LLNQLDGFESTQNIK--IIMATNRID 307
Query: 359 RLDPALLRPGRMDVHI 374
LDPALLRPGR+D I
Sbjct: 308 ILDPALLRPGRIDRKI 323
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 199 DMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258
D K ++++ FL+ ++ R+G RG LL GP GTGK+ L A+A + + +
Sbjct: 273 DEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMS 332
Query: 259 LSSVE------GNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQARTASPYWHSPR 310
S + G K +R++ A + SI+ ++++D Q R A H
Sbjct: 333 GSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAI-------GQKRNARDAAH--- 382
Query: 311 RDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVF--TTNHKDRLDPALLRPG 368
M Q N +L +G + +VF TN + LDPAL RPG
Sbjct: 383 ---MRQTLNQLLVD------------LDGFSKNEDLAHPVVFIGATNFPESLDPALTRPG 427
Query: 369 RMDVHIHMSYCTLCG 383
R D HIH+ + G
Sbjct: 428 RFDRHIHVPLPDVRG 442
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
T++ + + + + + + +E L R + + VG G LL+GP GTGK+ L A+AN
Sbjct: 148 TYEDIGGLEEQMQEVRETVEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANQ 207
Query: 250 LHFDVYDLELSSV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQART 301
+ + S + EG K +R + +A EN+ +++ +++ID A RT
Sbjct: 208 TNASFIKMAGSELVHKFIGEGAKLVRDLFEVARENEPAVIFIDEIDAI-------ASKRT 260
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
S V+R + LL +G + G+ RII TN D LD
Sbjct: 261 DSKTSGDAE-------------VQRTM--MQLLAEMDG-FDERGNIRIIA-ATNRFDMLD 303
Query: 362 PALLRPGRMDVHIHMSYCTLCGFKIL 387
PA+LRPGR D I + G +I+
Sbjct: 304 PAILRPGRFDRLIEVPKPNEDGREII 329
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 211 FLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS-VE-----G 264
FL+ + Y+++G +G LL GP GTGK+ L A+A + L S VE G
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 265 NKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLIL 322
+R + E K+ I+ ++++D ++R A R+ L L
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDAL-------GKSRGAGIMGGHDEREQTLNA----L 348
Query: 323 FVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHI 374
VE +G S+SG I++ TN + LDPALLRPGR D H+
Sbjct: 349 LVE-----------MDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
T++ + + + K + + +E ++ + + ++G +G LL GP GTGK+ L A+AN
Sbjct: 177 TYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANE 236
Query: 250 LHFDVYDLELSSV------EGNKHLRKVLIATENK--SILVVEDIDCCTELQDRSAQART 301
+ Y + + E ++LRK+ E SI+ +++ID
Sbjct: 237 AGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAI------------ 284
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+P+RD VER L LL +GL + +++ TN + LD
Sbjct: 285 ------APKRD------EATGEVERRL-VAQLLTLMDGLKGRG--QVVVIGATNRPNALD 329
Query: 362 PALLRPGRMDVHIHMSYCTLCGFK 385
PAL RPGR D I + G K
Sbjct: 330 PALRRPGRFDREIVIGVPDREGRK 353
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 148 IPHILKKSKELSKK-----KKTLKLFTLSSNRINHDTWQSAILDHPST-FDTLAMVTDMK 201
+P I +++E+ K+ K T+ F + + + +++ P+ ++ + + ++K
Sbjct: 402 LPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVEPSAMREVLVEVPNVKWEDIGGLEEVK 461
Query: 202 KMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261
+ + + +E LK K+ + ++G +G LLFGP GTGK+ L A+AN + ++
Sbjct: 462 QELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPE 521
Query: 262 V------EGNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDL 313
+ E K +R++ + I+ ++ID + R + +
Sbjct: 522 IFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQ----- 576
Query: 314 MLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMD 371
LL +G+ + +++ TN D +DPALLRPGR+D
Sbjct: 577 -------------------LLTELDGMEEPK--DVVVIAATNRPDIIDPALLRPGRLD 613
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 36/189 (19%)
Query: 197 VTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMA---NYLHFD 253
+ D+K+++ E LK + + +VG +G LL+GP GTGK+ L A+A N
Sbjct: 157 IRDIKEVV----ELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVR 212
Query: 254 VYDLELSSV---EGNKHLRKVLIATENKS--ILVVEDIDCCTELQDRSAQARTASPYWHS 308
V EL EG K +R V + KS I+ +++ID A RT S
Sbjct: 213 VVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAV-------ASKRTESLTGGD 265
Query: 309 PRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPG 368
V+R L LL +G + S GD +II TN D LDPA+LRPG
Sbjct: 266 RE-------------VQRTL--MQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPG 308
Query: 369 RMDVHIHMS 377
R D I ++
Sbjct: 309 RFDRIIEIA 317
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 32/183 (17%)
Query: 201 KKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260
K+ I + +E L + YR++G RG L++GP G GK+ L A+A++ + S
Sbjct: 171 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGS 230
Query: 261 SV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTASPYWHSPRRD 312
EG + +R V +A EN +I+ +++ID + + A+T +
Sbjct: 231 EFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDA---IATKRFDAQTGADRE------ 281
Query: 313 LMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDV 372
V+RIL LLN +G ++ + ++ TN D LDPALLRPGR+D
Sbjct: 282 -----------VQRIL--LELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDR 326
Query: 373 HIH 375
I
Sbjct: 327 KIE 329
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 32/182 (17%)
Query: 201 KKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260
K+ + + +E L + Y+++G RG LL+GP GTGK+ L A+A++ + S
Sbjct: 159 KQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGS 218
Query: 261 SV------EGNKHLRKVL-IATENK-SILVVEDIDCCTELQDRSAQARTASPYWHSPRRD 312
EG + +R V +A EN +I+ +++ID + + A+T +
Sbjct: 219 EFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDA---IATKRFDAQTGADRE------ 269
Query: 313 LMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDV 372
V+RIL LLN +G S + ++ TN +D LDPALLRPGR+D
Sbjct: 270 -----------VQRIL--MELLNQMDGFDVSVNVK--VIMATNRQDTLDPALLRPGRLDR 314
Query: 373 HI 374
I
Sbjct: 315 KI 316
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 35/211 (16%)
Query: 175 INHDTWQSAILDHPST-FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFG 233
I + + +++ P+ +D + + D+K+ I + +E L + D ++R+G +G+LL+G
Sbjct: 449 IEPSSLREVMVEVPNVHWDDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYG 508
Query: 234 PLGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIATEN--KSILVVED 285
P G GK+ L A+A + + ++ V E K +R++ + +I+ +++
Sbjct: 509 PPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDE 568
Query: 286 IDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSG 345
ID +PRR V ++L + + NG+
Sbjct: 569 IDSI------------------APRRGTTSDSGVTERIVNQLLTSLDGIEVMNGV----- 605
Query: 346 DERIIVFTTNHKDRLDPALLRPGRMDVHIHM 376
+++ TN D +DPALLR GR D I++
Sbjct: 606 ---VVIGATNRPDIMDPALLRAGRFDKLIYI 633
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
+++ + +++ I + +E LK + + R+G +G +L+GP GTGK+ + A+AN
Sbjct: 188 SYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANE 247
Query: 250 LHFDVYDLELSSV------EGNKHLRKVLIATEN--KSILVVEDIDCCTELQDRSAQART 301
+ + + + + LR++ E SI+ +++ID
Sbjct: 248 SGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSI------------ 295
Query: 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLD 361
+P+R+ + VER + LL +G+ I++ TN D +D
Sbjct: 296 ------APKRE------EVQGEVERRV-VAQLLTLMDGMKERG--HVIVIGATNRIDAID 340
Query: 362 PALLRPGRMDVHIHMSYCTLCGFK 385
PAL RPGR D I + G K
Sbjct: 341 PALRRPGRFDREIEIGVPDRNGRK 364
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 47/272 (17%)
Query: 137 YIIKETVLGTYIPHILKKSKELSKKKK----TLKLFTLSSNRINHDTWQSAILDHPS--- 189
YI+K + YI + + S + SK KK TL + TL+ RI + + S
Sbjct: 117 YIVKASSGPRYIVGV-RNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQ 175
Query: 190 ---TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAM 246
TFD + +T+ + + + +E LK + ++RVG +G LL+GP GTGK+ L A+
Sbjct: 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAV 235
Query: 247 ANYLHFDVYDLELSSV------EGNKHLRKVLI-ATENKS-ILVVEDIDCCTELQDRSAQ 298
A + + S + E + +R++ A E++ I+ ++++D R ++
Sbjct: 236 AATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG--GRRFSE 293
Query: 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358
+A +L+ Q ++ F L T I+ TN D
Sbjct: 294 GTSADREIQRTLMELLTQ-----------MDGFDNLGQTK-----------IIMATNRPD 331
Query: 359 RLDPALLRPGRMDVHIHMSYCTLCG----FKI 386
LDPALLRPGR+D + + G FKI
Sbjct: 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363
>sp|Q9BVQ7|SPA5L_HUMAN Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens
GN=SPATA5L1 PE=1 SV=2
Length = 753
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 44/174 (25%)
Query: 221 VGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNK------HLRKVL-- 272
+G A RG LL GP G GK+ L+ A+A ++ + +++G++ ++R+V
Sbjct: 229 LGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQR 288
Query: 273 ---IATENKSILVVEDIDC-CTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328
+A+ S+L ++++D C + R+ ++R +
Sbjct: 289 ARELASRGPSLLFLDEMDALCPQRGSRAPESRV-------------------------VA 323
Query: 329 ETFGLLNFTNGLWSSSGD-ERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTL 381
+ LL+ +SGD E ++V TN D LDPAL RPGR D + + TL
Sbjct: 324 QVLTLLD------GASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTL 371
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 30/205 (14%)
Query: 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMA 247
P ++ + + D+K + +E LK + R+G +G LL+GP G K++L+ A+A
Sbjct: 460 PVDWEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALA 519
Query: 248 NYLHFDVYDLELSSV------EGNKHLRKVL--IATENKSILVVEDIDCCTELQDRSAQA 299
H + + + + K L ++ +IL +++ID A
Sbjct: 520 TSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSIL-------GA 572
Query: 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDE--------RIIV 351
R+AS + +Q R L + + L+ GL SS E +I+
Sbjct: 573 RSAS------KTGCDVQERVLSVLLNE-LDGVGLKTIERRGSKSSQQEFQEVFNRSVMII 625
Query: 352 FTTNHKDRLDPALLRPGRMDVHIHM 376
TN D LD ALLRPGR+D I++
Sbjct: 626 AATNRPDVLDTALLRPGRLDKIIYI 650
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 36/212 (16%)
Query: 186 DHPSTFDTLAMVTDMKKMIMD--DLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLI 243
D P T T A V + + + + +++ FL+ Y+ +G +G LL+GP GTGK+ L
Sbjct: 156 DMPKT--TFADVAGVDEAVEELYEIKDFLQNPCRYQTLGAKIPKGVLLYGPPGTGKTLLA 213
Query: 244 AAMANYLHFDVYDLELSS-VE-----GNKHLRKVLIATENKS--ILVVEDIDCCTELQDR 295
A+A + + S VE G +R + + S I+ V++ID
Sbjct: 214 RAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGR---- 269
Query: 296 SAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTN 355
Q T H R + Q L VE +G +G I++ TN
Sbjct: 270 --QRGTGLGGGHDEREQTLNQ-----LLVE-----------MDGFGDRAG--VILIAATN 309
Query: 356 HKDRLDPALLRPGRMDVHIHMSYCTLCGFKIL 387
D LDPALLRPGR D I +S L G + +
Sbjct: 310 RPDILDPALLRPGRFDRQIPVSNPDLAGRRAV 341
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
+F +A + K+ IM+ FLK Y ++G RG +L GP GTGK+ L A A
Sbjct: 286 SFKNVAGCDEAKQEIME-FVHFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAG- 343
Query: 250 LHFDVYDLELSSVE--------GNKHLRKVLIATEN--KSILVVEDIDCCTELQDRSAQA 299
+V L +S E G +R + + SI+ +++ID + + +
Sbjct: 344 -EANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGAL 402
Query: 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDR 359
A+ + L++++ +G +S D+ +++ TN D
Sbjct: 403 GGANDEREATLNQLLVEM--------------------DGFTTS--DQVVVLAGTNRPDV 440
Query: 360 LDPALLRPGRMDVHIHMSYCTLCG 383
LD AL+RPGR D HI + + G
Sbjct: 441 LDNALMRPGRFDRHIQIDSPDVNG 464
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 120/272 (44%), Gaps = 42/272 (15%)
Query: 129 QELCNNGNYIIKE-----TVLGTYIPHILKKSKELSKK---KKTLKLFTLSSNRINHDTW 180
+EL ++G IIK+ VL + P + E + + + T+ + +
Sbjct: 81 EELTDDG-VIIKQHGNNQEVLTEFAPSLNIDDIEPGDRVAINDSFAVQTVLDDETDARAQ 139
Query: 181 QSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGK 239
+++ P+ T+D + + + + + + +E+ L+ + + VG G LL+GP GTGK
Sbjct: 140 AMEVVESPTVTYDDIGGIDEQVREVREAVEQPLENPEMFAEVGIDPPSGVLLYGPPGTGK 199
Query: 240 SSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVL-IATENKSILV-VEDIDCCTE 291
+ L A+AN + + S + EG + +R + +A E + ++V +++ID
Sbjct: 200 TMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAAEREPVVVFIDEIDAV-- 257
Query: 292 LQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIV 351
A RT S V+R + LL+ +G + GD RII
Sbjct: 258 -----ASKRTDSKTSGDAE-------------VQRTM--MQLLSEMDG-FDDRGDIRIIA 296
Query: 352 FTTNHKDRLDPALLRPGRMDVHIHMSYCTLCG 383
TN D LD A+LRPGR D I + + G
Sbjct: 297 -ATNRFDMLDEAILRPGRFDRLIEVPKPAVEG 327
>sp|Q9FIM2|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic
OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1
Length = 806
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 36/224 (16%)
Query: 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY 249
TF +A V + K+ + + +E FLK D Y R+G RG LL G GTGK+ L A+A
Sbjct: 327 TFADVAGVDEAKEELEEIVE-FLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG- 384
Query: 250 LHFDVYDLELSSVE--------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQA 299
DV + S+ E G +R + E SI+ +++ID + R +
Sbjct: 385 -ESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA--KSRDGKF 441
Query: 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDR 359
R S + R + Q LL +G SSS I++ TN D
Sbjct: 442 RMVS---NDEREQTLNQ----------------LLTEMDGFDSSSA--VIVLGATNRADV 480
Query: 360 LDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403
LDPAL RPGR D + + G + + ++ E PL +V
Sbjct: 481 LDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDV 524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,716,487
Number of Sequences: 539616
Number of extensions: 6214902
Number of successful extensions: 23856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 22612
Number of HSP's gapped (non-prelim): 1252
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)